Commit Graph

33886 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 8dfdd746e1
gnu: perl-xml-feed: Update to 0.59.
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.59.
2019-03-15 20:30:41 +01:00
Tobias Geerinckx-Rice 497b8df89a
gnu: perl-async-interrupt: Update to 1.24.
* gnu/packages/perl.scm (perl-async-interrupt): Update to 1.24.
[native-inputs]: Add perl-canary-stability.
2019-03-15 20:30:41 +01:00
Tobias Geerinckx-Rice 6dc75e18fe
gnu: perl-test-writevariants: Update to 0.014.
* gnu/packages/perl-check.scm (perl-test-writevariants): Update to 0.014.
[propagated-inputs]: Add perl-module-runtime.
2019-03-15 20:30:40 +01:00
Tobias Geerinckx-Rice 677aca12b7
gnu: perl-test-yaml: Update to 1.07.
* gnu/packages/perl-check.scm (perl-test-yaml): Update to 1.07.
2019-03-15 20:28:16 +01:00
Tobias Geerinckx-Rice e750f1fcdc
gnu: perl-test-trap: Update to 0.3.4.
* gnu/packages/perl-check.scm (perl-test-trap): Update to 0.3.4.
2019-03-15 18:40:46 +01:00
Tobias Geerinckx-Rice 960f2ade7e
gnu: perl-test-simple: Update to 1.302162.
* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302162.
2019-03-15 18:40:46 +01:00
Tobias Geerinckx-Rice a48d560f40
gnu: perl-test-sharedfork: Update to 0.35.
* gnu/packages/perl-check.scm (perl-test-sharedfork): Update to 0.35.
2019-03-15 18:40:46 +01:00
Tobias Geerinckx-Rice 17ed9595a5
gnu: perl-test-mocktime: Update to 0.17.
* gnu/packages/perl-check.scm (perl-test-mocktime): Update to 0.17.
2019-03-15 18:40:45 +01:00
Tobias Geerinckx-Rice 5c360e48db
gnu: perl-test-mockobject: Run tests.
* gnu/packages/perl-check.scm (perl-test-mockobject)[arguments]: Re-enable tests.
[native-inputs]: Add perl-cgi.
2019-03-15 18:40:45 +01:00
Tobias Geerinckx-Rice cb5c64c6f5
gnu: perl-test-mockobject: Update to 1.20180705.
* gnu/packages/perl-check.scm (perl-test-mockobject): Update to 1.20180705.
2019-03-15 18:40:44 +01:00
Tobias Geerinckx-Rice e1abfc7679
gnu: perl-test-manifest: Update to 2.021.
* gnu/packages/perl-check.scm (perl-test-manifest): Update to 2.021.
2019-03-15 18:40:44 +01:00
Tobias Geerinckx-Rice 39199eb440
gnu: perl-test-harness: Update to 3.42.
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.42.
2019-03-15 18:40:44 +01:00
Tobias Geerinckx-Rice 2ad839f373
gnu: perl-test-differences: Update to 0.67.
* gnu/packages/perl-check.scm (perl-test-differences): Update to 0.67.
2019-03-15 18:40:43 +01:00
Tobias Geerinckx-Rice 88c2cb5e12
gnu: perl-test-cleannamespaces: Update to 0.24.
* gnu/packages/perl-check.scm (perl-test-cleannamespaces): Update to 0.24.
2019-03-15 18:40:43 +01:00
Pierre Neidhardt 65fc1932b3
gnu: emacs-magit-svn: Update to 20190216.
* gnu/packages/emacs-xyz.scm (emacs-magit-svn): Update to 20190216.
2019-03-15 16:53:55 +01:00
Pierre Neidhardt 3a7ca60adc
gnu: emacs-magit: Update to 20190311.
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 20190311.
2019-03-15 16:51:42 +01:00
Pierre Neidhardt a6e4af53f9
gnu: Add emacs-transient.
* gnu/packages/emacs-xyz.scm (emacs-transient): New variable.
2019-03-15 16:40:23 +01:00
Marius Bakke ce32ce7047
gnu: fio: Update to 3.13.
* gnu/packages/benchmark.scm (fio): Update to 3.13.
2019-03-15 16:20:29 +01:00
Marius Bakke b12af3fd1e
gnu: ceph: Update to 13.2.5.
* gnu/packages/storage.scm (ceph): Update to 13.2.5.
2019-03-15 16:16:42 +01:00
Marius Bakke 18e627beac
gnu: libssh2: Update home page.
* gnu/packages/ssh.scm (libssh2)[home-page]: Use HTTPS.
2019-03-15 16:08:24 +01:00
Marius Bakke 81382e3f6d
gnu: meson: Update to 0.50.0.
* gnu/packages/build-tools.scm (meson): Update to 0.50.0.
* gnu/packages/patches/at-spi2-core-meson-compat.patch,
gnu/packages/patches/totem-meson-compat.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/gnome.scm (totem)[source](patches): Add totem-meson.compat.patch.
* gnu/packages/gtk.scm (at-spi2-core)[source](patches): New field.
2019-03-15 16:03:59 +01:00
Marius Bakke 82924965d7
gnu: rapidjson: Disable CPU optimization.
* gnu/packages/web.scm (rapidjson)[arguments]: Add #:configure-flags.
2019-03-15 15:03:31 +01:00
Marius Bakke df9f515ebc
gnu: rapidjson: Adjust indentation.
* gnu/packages/web.scm (rapidjson): Reindent.  Remove unnecessary splicing in
arguments while at it.
2019-03-15 15:03:31 +01:00
Marius Bakke ca497b4311
gnu: Update libimobiledevice.org home pages.
* gnu/packages/libusb.scm (libplist, libusbmuxd, libimobiledevice,
ifuse)[source, home-page]: Use HTTPS.
2019-03-15 15:03:31 +01:00
Pierre Neidhardt 034b8fd475
gnu: emacs-helm-pass: Update to 0.3.
* gnu/packages/emacs-xyz.scm (emacs-helm-pass): Update to 0.3.
2019-03-15 14:42:32 +01:00
Ricardo Wurmus 526b1efbba
gnu: Add python-ws4py.
* gnu/packages/python-web.scm (python-ws4py): New variable.
2019-03-15 11:37:26 +01:00
Ricardo Wurmus 07c8b558e3
gnu: Add bwa-meth.
* gnu/packages/bioinformatics.scm (bwa-meth): New variable.
2019-03-15 11:36:56 +01:00
Ricardo Wurmus 963dfd3a06
gnu: Add python-toolshed.
* gnu/packages/python-xyz.scm (python-toolshed): New variable.
2019-03-15 11:36:38 +01:00
Ricardo Wurmus e4a17532f9
gnu: Add r-ioniser.
* gnu/packages/bioconductor.scm (r-ioniser): New variable.
2019-03-15 10:58:05 +01:00
Pierre Neidhardt 43a0db3cd4
gnu: emacs-helm-slime: Update to 0.3.0.
* gnu/packages/emacs-xyz.scm (emacs-helm-slime): Update to 0.3.0.
2019-03-15 10:14:25 +01:00
Pierre Neidhardt 98a1ca7eb2
gnu: emacs-helm-eww: Update to 1.2.
* gnu/packages/emacs-xyz.scm (emacs-helm-eww): Update to 1.2.
2019-03-15 10:14:19 +01:00
Pierre Neidhardt 4d0f20d91c
gnu: Add emacs-elmacro.
* gnu/packages/emacs-xyz.scm (emacs-elmacro): New variable.
2019-03-15 10:01:42 +01:00
Pierre Neidhardt 99d5e5df27
gnu: mkvtoolnix: Install GUI to separate output.
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Do it.
2019-03-15 09:19:00 +01:00
Brett Gilio fe4a4bd23a
gnu: python-language-server: Update to 0.25.0.
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.25.0.
[propagated-inputs]: Add python-pylint.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-14 21:42:09 -04:00
Jonathan Brielmaier 138950a88b
gnu: meep: Update to 1.8.0.
* gnu/packages/engineering.scm (meep): Update to 1.8.0.
[source]: Fetch source from GitHub, as it's only there.
[inputs]: Use Guile 2.2, as meep supports it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-14 20:49:02 -04:00
Jonathan Brielmaier e719562d59
gnu: mpb: Update to 1.8.0.
* gnu/packages/engineering.scm (mpb): Update to 1.8.0.
[source]: Fetch source from GitHub, as it's only there.
[arguments]: Build shared library, as required by meep.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-14 20:49:02 -04:00
Jonathan Brielmaier a7de5a5006
gnu: guile-libctl: Update to 4.2.0.
* gnu/packages/engineering.scm (guile-libctl): Update to 4.2.0.
[source]: Update source link to GitHub.
[arguments]: Build shared library as required by meep.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-14 20:49:02 -04:00
Jonathan Brielmaier 1618c6fe3b
gnu: harminv: Build shared library.
The shared library is required by meep.

* gnu/packages/engineering.scm (harminv)[arguments]: Enable building of
shared library.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-14 20:48:55 -04:00
Marius Bakke ebebee94f3
gnu: gjs: Use the test-only Xorg variant for tests.
* gnu/packages/gnome.scm (gjs)[native-inputs]: Change XORG-SERVER to
XORG-SERVER-FOR-TESTS.
2019-03-15 01:11:21 +01:00
Marius Bakke 4ca23a3d22
gnu: libseccomp: Update to 2.4.0.
* gnu/packages/linux.scm (libseccomp): Update to 2.4.0.
2019-03-15 01:11:21 +01:00
Tobias Geerinckx-Rice 60fddfae13
gnu: protozero: Update to 1.6.7.
* gnu/packages/geo.scm (protozero): Update to 1.6.7.
2019-03-15 00:41:02 +01:00
Leo Famulari 10b30b9773
gnu: Remove duplicate go-github-com-kr-text.
This effectively reverts 56f610f5c7. But I removed
the preexisting package since the new one is simpler.

* gnu/packages/golang.scm (go-github-com-kr-text): Remove variable.
2019-03-14 19:10:17 -04:00
Pierre Neidhardt 31960f6fd2
gnu: Add emacs-helm-notmuch.
* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): New variable.
2019-03-14 23:55:50 +01:00
Tobias Geerinckx-Rice a3783aca66
gnu: libgeotiff: Update to 1.4.3.
* gnu/packages/geo.scm (libgeotiff): Update to 1.4.3.
2019-03-14 23:51:49 +01:00
Tobias Geerinckx-Rice 93394133e1
gnu: perl-glib: Update to 1.329.
* gnu/packages/glib.scm (perl-glib): Update to 1.329.
2019-03-14 23:51:49 +01:00
Tobias Geerinckx-Rice 832e7be42d
gnu: perl-gd-securityimage: Update to 1.75.
* gnu/packages/gd.scm (perl-gd-securityimage): Update to 1.75.
2019-03-14 23:51:49 +01:00
Tobias Geerinckx-Rice 06900d90e7
gnu: perl-gd: Update to 2.71.
* gnu/packages/gd.scm (perl-gd): Update to 2.71.
2019-03-14 23:51:48 +01:00
Tobias Geerinckx-Rice 766bfda19d
gnu: emacs-org, emacs-org-contrib: Update to 9.2.2.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.2.2.
(emacs-org-contrib): Update to matching 20190311.
2019-03-14 23:51:48 +01:00
Ricardo Wurmus 992600141a
gnu: Add gst-kaldi-nnet2-online.
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): New variable.
2019-03-14 23:32:51 +01:00
Ricardo Wurmus 1fdd20c7d7
gnu: kaldi: Install headers and fix installation of libraries.
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Fix installation of
libraries and install headers in "install" phase.
2019-03-14 23:32:51 +01:00
Tobias Geerinckx-Rice a333cbf194
gnu: containerd: Update to 1.2.5.
* gnu/packages/docker.scm (containerd): Update to 1.2.5.
2019-03-14 23:18:49 +01:00
Tobias Geerinckx-Rice 947849010d
gnu: docker, docker-cli: Update to 18.09.3.
* gnu/packages/docker.scm (%docker-version): Update to 18.09.3.
2019-03-14 23:18:49 +01:00
Tobias Geerinckx-Rice 1e91d2ef3c
gnu: sigrok-firmware-fx2lafw: Update to 0.1.6.
* gnu/packages/electronics.scm (sigrok-firmware-fx2lafw): Update to 0.1.6.
2019-03-14 22:09:37 +01:00
Tobias Geerinckx-Rice a431e21383
gnu: font-terminus: Install X11 8-bit code pages.
* gnu/packages/fonts.scm (font-terminus)[outputs]: Add ‘pcf-8bit’ output.
[arguments]: Add new phases to build and install these 8-bit PCF fonts.
2019-03-14 22:09:19 +01:00
Tobias Geerinckx-Rice 223055dd3f
gnu: unbound: Update to 1.9.1.
* gnu/packages/dns.scm (unbound): Update to 1.9.1.
2019-03-14 21:15:19 +01:00
Tobias Geerinckx-Rice 0bc38ce286
gnu: inxi-minimal: Update to 3.0.32-1.
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.32-1.
2019-03-14 21:15:18 +01:00
Tobias Geerinckx-Rice ea28271110
gnu: python-django-appconf: Update to 1.0.3.
* gnu/packages/django.scm (python-django-appconf): Update to 1.0.3.
2019-03-14 21:15:17 +01:00
Leo Famulari 21d06acd91
gnu: Syncthing: Stop using bundled dependencies.
* gnu/packages/syncthing.scm (syncthing)[snippet]: Remove.
[inputs]: New field.
2019-03-14 15:34:31 -04:00
Leo Famulari d69f9f4a30
gnu: Remove go-github-com-audriusbutkevicius-cli.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Remove
variable.
2019-03-14 15:34:31 -04:00
Leo Famulari 78d1b85a54
gnu: Provide the full 'rollinghash' Go library.
* gnu/packages/syncthing.scm
(go-github-com-chmduquesne-rollinghash-adler32): Replace with ...
(go-github-com-chmduquesne-rollinghash): ... new variable.
2019-03-14 15:34:31 -04:00
Leo Famulari d8742c0af3
gnu: Remove go-github-com-audriusbutkevicius-pfilter.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-pfilter):
Remove variable.
2019-03-14 15:34:31 -04:00
Leo Famulari 94b1e5e037
gnu: Prometheus client: Update to 0.9.2.
* gnu/packages/syncthing.scm
(go-github-com-client-golang-prometheus-promhttp,
go-github-com-client-golang-prometheus): Update to 0.9.2.
(go-github-com-client-golang-prometheus-promhttp)
[propagated-inputs]: Add go-github-com-prometheus-common-model and
go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg.
(go-github-com-client-golang-prometheus)[propagated-inputs]: Remove
go-github-com-golang-protobuf-proto and
go-github-com-client-golang-prometheus-promhttp. Add
go-github-com-prometheus-common-model and
go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg.
(go-github-com-prometheus-union): Delete variable.
2019-03-14 15:34:31 -04:00
Leo Famulari 9d81bab8e1
gnu: Add go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg.
* gnu/packages/syncthing.scm
(go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg):
New variable.
2019-03-14 15:34:31 -04:00
Leo Famulari bafdb0fa09
gnu: Add go-github-com-prometheus-common-model.
* gnu/packages/syncthing.scm (go-github-com-prometheus-common-model):
New variable.
2019-03-14 15:34:30 -04:00
Leo Famulari fef131b460
gnu: go-github-com-calmh-xdr: Update to 1.1.0.
The diff shows this package being downgraded from 2.0.1 to 1.1.0.
However, '2.0.1' was a typo — it should have read 1.0.1.

* gnu/packages/syncthing.scm (go-github-com-calmh-xdr): Update to 1.1.0.
2019-03-14 15:34:30 -04:00
Leo Famulari 7dc89dc6a1
gnu: Add go-github-com-flynn-archive-go-shlex.
* gnu/packages/syncthing.scm (go-github-com-flynn-archive-go-shlex): New
variable.
2019-03-14 15:34:30 -04:00
Leo Famulari 2f9bbd8e6c
gnu: Gogo protocol buffers: Update to 1.2.1.
* gnu/packages/golang.scm (go-github-com-gogo-protobuf,
go-github-com-gogo-protobuf-protoc-gen-gogo,
go-github-com-gogo-protobuf-gogoproto, go-github-com-gogo-protobuf-proto):
Update to 1.2.1.
(go-github-com-gogo-protobuf-proto)[license] Fix license.
[synopsis, description]: Complete.
(go-github-com-gogo-protobuf-protoc-gen-gogo)[arguments]: Skip the tests.
2019-03-14 15:34:30 -04:00
Leo Famulari e3f14f47ff
gnu: Add go-github-com-gogo-protobuf-gogoproto.
* gnu/packages/golang.scm (go-github-com-gogo-protobuf-gogoproto): New variable.
2019-03-14 15:34:30 -04:00
Leo Famulari c83f9f661d
gnu: go-github-com-urfave-cli: Update to 1.20.0-0.693af58.
* gnu/packages/golang.scm (go-github-com-urfave-cli): Update to
1.20.0-0.693af58.
2019-03-14 15:34:29 -04:00
Leo Famulari 24e3520dd0
gnu: go-github-com-mattn-go-isatty: Use upstream version string.
* gnu/packages/golang.scm (go-github-com-mattn-go-isatty): Use upstream
version.
2019-03-14 15:34:29 -04:00
Leo Famulari b3f0f8a62e
gnu: go-golang-org-x-sys-unix: Update to 0.0.0-2.4d1cda0.
* gnu/packages/golang.scm (go-golang-org-x-sys-unix): Update to 0.0.0-2.4d1cda0.
[arguments]: Remove the 'patch-tests' phase.
2019-03-14 15:34:29 -04:00
Leo Famulari 3034d1a193
gnu: Go networking libraries: Update to 0.0.0-2.351d144.
* gnu/packages/golang.scm (go-golang-org-x-net-internal-socks,
go-golang-org-x-net-internal-socket): New variables.
(go-golang-org-x-net-ipv4, go-golang-org-x-net-bpf, go-golang-org-x-net-context,
go-golang-org-x-net-internal-iana, go-golang-org-x-net-ipv6,
go-golang-org-x-net-proxy): Update to 0.0.0-2.351d144.
2019-03-14 15:34:29 -04:00
Leo Famulari 782dd442b5
gnu: Go crypto libraries: Update to 0.0.0-2.0fcca48.
* gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea): Update to 0.0.0-2.0fcca48.
2019-03-14 15:34:29 -04:00
Leo Famulari 19ef857caa
gnu: go-gopkg.in-check.v1: Update to 0.0.0-1.788fd78.
* gnu/packages/check.scm (go-gopkg.in-check.v1): Update to 0.0.0-1.788fd78.
[propagated-inputs]: Add go-github-com-kr-pretty.
2019-03-14 15:34:29 -04:00
Leo Famulari aa413ff8f7
gnu: Add go-github-com-kr-pretty.
* gnu/packages/golang.scm (go-github-com-kr-pretty): New variable.
2019-03-14 15:34:28 -04:00
Leo Famulari 56f610f5c7
gnu: Add go-github-com-kr-text.
* gnu/packages/golang.scm (go-github-com-kr-text): New variable.
2019-03-14 15:34:28 -04:00
Leo Famulari 4e9e74be07
gnu: Add go-github-com-audriusbutkevicius-recli.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-recli): New
variable.
2019-03-14 15:34:28 -04:00
Leo Famulari 0c28ee8cc1
gnu: go-github-com-minio-sha256-simd: Update to 0.0.0-3.cc1980c.
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): Update to
0.0.0-3.cc1980c.
2019-03-14 15:34:28 -04:00
Leo Famulari d73cbbda3e
gnu: go-github-com-lib-pq: Update to 1.0.0.
* gnu/packages/syncthing.scm (go-github-com-lib-pq): Update to 1.0.0.
2019-03-14 15:34:28 -04:00
Leo Famulari ac51900dfd
gnu: go-github-com-thejerf-suture: Update to 3.0.2.
* gnu/packages/syncthing.scm (go-github-com-thejerf-suture): Update to 3.0.2.
2019-03-14 15:34:27 -04:00
Leo Famulari 767579d18b
gnu: go-github-com-sasha-s-go-deadlock: Update to 0.2.0.
* gnu/packages/syncthing.scm (go-github-com-sasha-s-go-deadlock): Update
to 0.2.0.
2019-03-14 15:34:27 -04:00
Leo Famulari c36177c698
gnu: go-github-com-pkg-errors: Update to 0.8.1.
* gnu/packages/syncthing.scm (go-github-com-pkg-errors): Update to 0.8.1.
2019-03-14 15:34:27 -04:00
Leo Famulari 061387ea32
gnu: go-github-com-syncthing-notify: Update to 0.0.0-4.4e389ea.
* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-4.4e389ea.
2019-03-14 15:34:27 -04:00
Leo Famulari edda279fda
gnu: go-github-com-d4l3k-messagediff: Update to 1.2.1.
* gnu/packages/syncthing.scm (go-github-com-d4l3k-messagediff): Update to 1.2.1.
2019-03-14 15:34:27 -04:00
Leo Famulari 2fcd1c84af
gnu: go-github-com-chmduquesne-rollinghash-adler32: Update to 4.0.0-0.a60f8e7.
* gnu/packages/syncthing.scm (go-github-com-chmduquesne-rollinghash-adler32):
Update to 4.0.0-0.a60f8e7.
2019-03-14 15:34:27 -04:00
Leo Famulari 9c359ff445
gnu: Remove the various Go union meta-packages.
* gnu/packages/golang.scm (go-github-com-gogo-protobuf-union,
go-golang-org-x-crypto-union): Remove variables.
(go-golang-org-x-crypto-bcrypt, go-golang-org-x-crypto-blowfish,
go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-twofish,)[arguments]: Remove obsolete
'make-gzip-archive-writable' phase.
(go-golang-org-x-crypto-ed25519)[arguments]: The phase
'make-gzip-archive-writable' belongs here now.
(go-github-com-multiformats-go-multihash)[native-inputs]: Remove
go-golang-org-x-crypto-union. Add go-golang-org-x-crypto-blake2s and
go-golang-org-x-crypto-sha3.
(go-github-com-libp2p-go-libp2p-peer)[native-inputs]: Remove
go-golang-org-x-crypto-union. Add go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-ed25519, and go-golang-org-x-crypto-sha3.
(go-github-com-libp2p-go-libp2p-metrics)[native-inputs]: Remove
go-golang-org-x-crypto-union. Add go-golang-org-x-crypto-sha3,
go-golang-org-x-crypto-ed25519, and go-golang-org-x-crypto-blake2s.
(go-github-com-multiformats-go-multiaddr)[native-inputs]: Remove
go-golang-org-x-crypto-union. Add go-golang-org-x-crypto-sha3 and
go-golang-org-x-crypto-blake2s.
(go-github-com-multiformats-go-multiaddr-net)[native-inputs]: Remove
go-golang-org-x-crypto-union. Add go-golang-org-x-crypto-sha3 and
go-golang-org-x-crypto-blake2s.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api)[native-inputs]: Remove
go-golang-org-x-crypto-union. Add go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-ed25519, and go-golang-org-x-crypto-sha3.
(gx)[native-inputs]: Remove go-golang-org-x-crypto-union. Add
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-ed25519, and
go-golang-org-x-crypto-sha3.
(gx-go)[native-inputs]: Remove go-golang-org-x-crypto-union. Add
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-ed25519, and
go-golang-org-x-crypto-sha3.
* gnu/packages/syncthing.scm: Remove go-golang-org-x-text-union,
go-golang-org-x-net-union, and go-github-com-vitrun-qart-union.
2019-03-14 15:34:26 -04:00
Leo Famulari e3900a4d64
build-system/go: Build with a filesystem union of Go dependencies.
This basically changes (guix build-system go) so that instead of looking
up its dependencies in a list of directories in $GOPATH, all the
Go dependencies are symlinked into a single directory.

Fixes <https://bugs.gnu.org/33620>.

* guix/build/go-build-system.scm (setup-go-environment): New variable.
(setup-environment, install-source): Remove variables.
(unpack): Unpack the source relative to $GOPATH.
(install): Do not install the compiled objects in the 'pkg' directory.
Install the source code in this phase, and only install the source of
the package named by IMPORT-PATH.
* doc/guix.texi (Build Systems): Adjust accordingly.
* gnu/packages/docker.scm (docker): Import (guix build union) on the build side
and adjust to build phase name changes in (guix build-system go).
* gnu/packages/shellutils.scm (direnv): Likewise.
* gnu/packages/databases.scm (mongo-tools)[arguments]:
Set '#:install-source #f'.
* gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts'
phase after the 'install' phase.
2019-03-14 15:34:26 -04:00
Leo Famulari 5a14b913ad
gnu: Remove Go 1.9.
* gnu/packages/golang.scm (go-1.9): Remove variable.
(go-1.11): Inherit from go-1.4 and consolidate the inherited build
phases from go-1.9.

Go 1.11 should be essentially unchanged with this commit, although the
derivation is different.
2019-03-14 15:34:26 -04:00
Tobias Geerinckx-Rice a503071797
gnu: python-flexmock: Update to 0.10.3.
* gnu/packages/check.scm (python-flexmock): Update to 0.10.3.
2019-03-14 19:47:30 +01:00
Tobias Geerinckx-Rice fbec363e55
gnu: python-freezegun: Update to 0.3.11.
* gnu/packages/check.scm (python-freezegun): Update to 0.3.11.
2019-03-14 19:47:30 +01:00
Tobias Geerinckx-Rice bca0b66424
gnu: python-nose-timer: Update to 0.7.4.
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.4.
2019-03-14 19:47:30 +01:00
Tobias Geerinckx-Rice 4a17211ad0
gnu: aubio: Update to 0.4.9.
* gnu/packages/audio.scm (aubio): Update to 0.4.9.
2019-03-14 19:47:29 +01:00
Tobias Geerinckx-Rice 0b75db34d4
gnu: qjackctl: Update to 0.5.6.
* gnu/packages/audio.scm (qjackctl): Update to 0.5.6.
2019-03-14 19:47:29 +01:00
Tobias Geerinckx-Rice 9d4e42dcfb
gnu: qsynth: Update to 0.5.5.
* gnu/packages/audio.scm (qsynth): Update to 0.5.5.
2019-03-14 19:47:29 +01:00
Tobias Geerinckx-Rice 205df73940
gnu: Move libconfuse to (gnu packages textutils).
* gnu/packages/wm.scm (libconfuse): Move…
* gnu/packages/textutils.scm (libconfuse): …to here.
Adjust all imports.
2019-03-14 19:47:28 +01:00
Tobias Geerinckx-Rice 2fe29c8490
gnu: sslh: Update to 1.20.
* gnu/packages/networking.scm (sslh): Update to 1.20.
[native-inputs]: Add perl-conf-libconfig. Remove valgrind.
[arguments]: Re-indent.
2019-03-14 19:47:28 +01:00
Tobias Geerinckx-Rice 98580bd93a
gnu: Add perl-conf-libconfig.
* gnu/packages/perl.scm (perl-conf-libconfig): New public variable.
2019-03-14 19:47:27 +01:00
Tobias Geerinckx-Rice 925926bab1
gnu: sslh: Don't use unstable tarball.
* gnu/packages/networking.scm (sslh)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-14 19:47:27 +01:00
Marius Bakke 1e33331cce
gnu: dconf: Update to 0.32.0.
* gnu/packages/gnome.scm (dconf): Update to 0.32.0.
[native-inputs]: Add BASH-COMPLETION.
2019-03-14 19:40:10 +01:00
Marius Bakke 3ea5a8ee47
gnu: at-spi2-atk: Update to 2.32.0.
* gnu/packages/gtk.scm (at-spi2-atk): Update to 2.32.0.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Adjust test invokation.
[native-inputs]: Add LIBXML2.
2019-03-14 19:39:09 +01:00
Marius Bakke 5254f17eeb
gnu: at-spi2-core: Update to 2.32.0.
* gnu/packages/gtk.scm (at-spi2-core): Update to 2.32.0.
[arguments]: Adjust for renamed configure flag.
[inputs]: Move LIBXI and LIBXTST ...
[propagated-inputs]: ... here.
2019-03-14 19:37:46 +01:00
Marius Bakke 5f07df1743
gnu: atk: Update to 2.32.0.
* gnu/packages/gtk.scm (atk): Update to 2.32.0.
[build-system]: Change to MESON-BUILD-SYSTEM.
[outputs]: Remove (due to dependency cycle on gtk-doc).
[arguments]: Remove.
[native-inputs]: Add GETTEXT-MINIMAL.
2019-03-14 19:36:26 +01:00
Danny Milosavljevic 625697ea60
gnu: lxqt-about: Make it more reproducible.
* gnu/packages/lxqt.scm (lxqt-about)[arguments]<#:phases>[setenv]: New phase.
2019-03-14 16:47:19 +01:00
Meiyo Peng 50bc1d0125
gnu: screengrab: Update to 1.101.
* gnu/packages/lxqt.scm (screengrab): Update to 1.101.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:19 +01:00
Meiyo Peng d30cd1a552
gnu: qterminal: Update to 0.14.1.
* gnu/packages/lxqt.scm (qterminal): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:19 +01:00
Meiyo Peng 238e42a3e5
gnu: qtermwidget: Update to 0.14.1.
* gnu/packages/lxqt.scm (qtermwidget): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 6d3a2dbef1
gnu: qps: Update to 1.10.20.
* gnu/packages/lxqt.scm (qps): Update to 1.10.20.
[native-inputs]: Add lxqt-build-tools.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng f376b3254c
gnu: pavucontrol-qt: Update to 0.14.1.
* gnu/packages/lxqt.scm (pavucontrol-qt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng b42bd22ebd
gnu: obconf-qt: Update to 0.14.1.
* gnu/packages/lxqt.scm (obconf-qt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng f2a8c02c9a
gnu: lximage-qt: Update to 0.14.1.
* gnu/packages/lxqt.scm (lximage-qt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 3f0294c196
gnu: compton-conf: Update to 0.14.1.
* gnu/packages/lxqt.scm (compton-conf): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng cd7248bb42
gnu: pcmanfm-qt: Update to 0.14.1.
* gnu/packages/lxqt.scm (pcmanfm-qt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng b3f562921e
gnu: libfm-qt: Update to 0.14.1.
* gnu/packages/lxqt.scm (libfm-qt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 3cc904ab7c
gnu: lxqt-themes: Update to 0.14.0.
* gnu/packages/lxqt.scm (lxqt-themes): Update to 0.14.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 3b7348c4dc
gnu: lxqt-sudo: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-sudo): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 536afd9bf2
gnu: lxqt-session: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 1b8daca27b
gnu: lxqt-runner: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-runner): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 63c80bd7a9
gnu: lxqt-qtplugin: Update to 0.14.0.
* gnu/packages/lxqt.scm (lxqt-qtplugin): Update to 0.14.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 84dea9bb71
gnu: lxqt-powermanagement: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-powermanagement): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng 45ef5374a7
gnu: lxqt-policykit: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-policykit): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:18 +01:00
Meiyo Peng c4a17525b9
gnu: lxqt-panel: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-panel): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng a728afb63b
gnu: lxqt-openssh-askpass: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 4625cc66bf
gnu: lxqt-notificationd: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-notificationd): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 39387425fd
gnu: lxqt-globalkeys: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-globalkeys): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 2493df4404
gnu: lxqt-config: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-config): Update to 0.14.1.
[inputs]: Add eudev, libxi, xf86-input-libinput.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 6a75a1a561
gnu: lxqt-admin: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-admin): Update to 0.14.1.
[arguments]: Remove #:configure-flags
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng f42b4080c3
gnu: lxqt-about: Update to 0.14.1.
* gnu/packages/lxqt.scm (lxqt-about): Update to 0.14.1.
[arguments]: Remove #:configure-flags.
<#:phases>[patch-translations-dir]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 4c3553ab41
gnu: libsysstat: Update to 0.4.2.
* gnu/packages/lxqt.scm (libsysstat): Update to 0.4.2.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 9f87e52fbb
gnu: liblxqt: Update to 0.14.1.
* gnu/packages/lxqt.scm (liblxqt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.  Add 'patch-translations-dir' phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng c1105c4bcf
gnu: libqtxdg: Update to 3.3.1.
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.3.1.
[native-inputs]: Add lxqt-build-tools.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng 5b7a354d72
gnu: lxqt-build-tools: Update to 0.6.0.
* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.6.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng d1d8235e45
gnu: libfm: Update to 1.3.1.
* gnu/packages/lxde.scm (libfm): Update to 1.3.1.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:17 +01:00
Meiyo Peng a436a4919b
gnu: menu-cache: Update to 1.1.0.
* gnu/packages/lxde.scm (menu-cache): Update to 1.1.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-14 16:47:14 +01:00
Marius Bakke c958c31cae
gnu: double-conversion: Update to 3.1.4.
* gnu/packages/maths.scm (double-conversion): Update to 3.1.4.
2019-03-14 15:40:10 +01:00
Marius Bakke 4d9ebc62ba
gnu: gtk+: Update to 3.24.7.
* gnu/packages/gtk.scm (gtk+): Update to 3.24.7.
2019-03-14 15:40:09 +01:00
Marius Bakke ebfe259f66
Merge branch 'master' into staging 2019-03-14 15:06:06 +01:00
Marius Bakke 8cc3983a4d
gnu: jasper: Update to 2.0.16.
* gnu/packages/image.scm (jasper): Update to 2.0.16.
2019-03-14 14:44:01 +01:00
Marius Bakke 22656b24d8
gnu: rapidjson: Update home page.
* gnu/packages/web.scm (rapidjson)[source, home-page]: Follow redirected URL.
2019-03-14 14:44:01 +01:00
Marius Bakke 84ff7821ff
gnu: samba: Update to 4.9.5.
* gnu/packages/samba.scm (samba): Update to 4.9.5.
2019-03-14 14:44:01 +01:00
Marius Bakke dd10c0adad
gnu: libzip: Update to 1.5.2.
* gnu/packages/compression.scm (libzip): Update to 1.5.2.
2019-03-14 14:44:00 +01:00
Marius Bakke 66fea0c4d9
gnu: libzip: Don't use NAME in source URI.
* gnu/packages/compression.scm (libzip)[source](uri): Hard-code NAME.
2019-03-14 14:44:00 +01:00
Marius Bakke 72663b4822
gnu: WebKitGTK: Update to 2.24.0.
* gnu/packages/webkit.scm (webkitgtk-2.22): Rename to ...
(webkitgtk-2.24): ... this.  Update to 2.24.0.
[inputs]: Add OPENJPEG.
* gnu/packages/gnome.scm (eolie, epiphany)[inputs]: Adjust accordingly.
* gnu/packages/web-browsers.scm (next-gtk-webkit)[inputs]: Likewise.
2019-03-14 14:44:00 +01:00
Marius Bakke eccaa8bf8d
gnu: libsoup: Update to 2.66.0.
* gnu/packages/gnome.scm (libsoup): Update to 2.66.0.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add GTK-DOC.
[inputs]: Add MIT-KRB5.  Move SQLITE and LIBPSL ...
[propagated-inputs]: ... here.
2019-03-14 14:44:00 +01:00
Marius Bakke b165fe61dc
gnu: Kodi: Add Wayland variant.
* gnu/packages/kodi.scm (kodi/wayland): New public variable.
2019-03-14 14:44:00 +01:00
Marius Bakke 1f2e060148
gnu: Add waylandpp.
* gnu/packages/freedesktop.scm (waylandpp): New public variable.
2019-03-14 14:43:59 +01:00
Brett Gilio 209393a003
gnu: Add emacs-lsp-ui.
* gnu/packages/emacs-xyz.scm (emacs-lsp-ui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-14 11:42:06 +01:00
Brett Gilio 60adaae0cf
gnu: Add emacs-lsp-mode.
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-14 11:40:07 +01:00
Brett Gilio 3490212a41
gnu: emacs-dash: Update to 2.15.0.
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.15.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-14 11:37:35 +01:00
Vagrant Cascadian 8cd10b22f9
gnu: Update dtc to 1.5.0.
* gnu/packages/bootloaders (dtc): Update to 1.5.0.
[native-inputs]: Add libyaml and pkg-config.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-14 11:02:40 +01:00
Meiyo Peng bb2f114de9
gnu: fish: Update to 3.0.2.
* gnu/packages/shells.scm (fish): Update to 3.0.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-14 11:01:11 +01:00
Nicolò Balzarotti 100f56024e
gnu: Add r-rematch2.
* gnu/packages/cran.scm (r-rematch2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-14 10:54:49 +01:00
Leo Famulari 8a55c38915
gnu: w3m: Update to 0.5.3+git20190105.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20190105.
2019-03-13 20:06:15 -04:00
Ludovic Courtès 59e8044588
Remove traces of "GuixSD".
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Remove
mentions of "GuixSD".
* gnu/bootloader/grub.scm (install-grub-efi): Likewise.
* gnu/build/vm.scm (make-iso9660-image): Change default #:volume-id to
"Guix_image".
(initialize-hard-disk): Search for the "Guix_image" label.
* gnu/ci.scm (system-test-jobs, tarball-jobs): Remove "GuixSD".
* gnu/installer/newt/welcome.scm (run-welcome-page): Likewise.
* gnu/packages/audio.scm (supercollider)[description]: Likewise.
* gnu/packages/curl.scm (curl): Likewise.
* gnu/packages/emacs.scm (emacs): Likewise.
* gnu/packages/gnome.scm (network-manager): Likewise.
* gnu/packages/julia.scm (julia): Likewise.
* gnu/packages/linux.scm (alsa-plugins): Likewise.
(powertop, wireless-regdb): Likewise.
* gnu/packages/package-management.scm (guix): Likewise.
* gnu/packages/polkit.scm (polkit): Likewise.
* gnu/packages/tex.scm (texlive-bin): Likewise.
* gnu/services/base.scm (file-systems->fstab): Likewise.
* gnu/services/cups.scm (%cups-activation): Likewise.
* gnu/services/mail.scm (%dovecot-activation): Likewise.
* gnu/services/messaging.scm (prosody-configuration)[log]: Likewise.
* gnu/system/examples/vm-image.tmpl (vm-image-motd): Likewise.
* gnu/system/install.scm (installation-os)[file-systems]: Change root
file system label to "Guix_image".
* gnu/system/mapped-devices.scm (check-device-initrd-modules):
Remove "GuixSD".
* gnu/system/vm.scm (system-docker-image): Likewise.
(system-disk-image)[root-label]: Change to "Guix_image".
* gnu/tests/install.scm (run-install): Remove "GuixSD".
* guix/modules.scm (guix-module-name?): Likewise.
* nix/libstore/optimise-store.cc: Likewise.
2019-03-13 23:12:43 +01:00
Ricardo Wurmus fd4c7a098a
gnu: Add python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
2019-03-13 22:48:53 +01:00
Ricardo Wurmus 55a0a3c853
gnu: python-loompy: Update to 2.0.17.
* gnu/packages/bioinformatics.scm (python-loompy): Update to 2.0.17.
[source]: Fetch via git.
[arguments]: Enable tests, replace "check" phase.
[propagated-inputs]: Add python-pandas.
[native-inputs]: Add python-pytest.
2019-03-13 22:48:52 +01:00
Oleg Pykhalov 1f058eced3
gnu: Add emacs-dockerfile-mode.
* gnu/packages/emacs-xyz.scm (emacs-dockerfile-mode): New variable.
2019-03-13 23:23:49 +03:00
Oleg Pykhalov 18964a6029
gnu: Add emacs-docker.
* gnu/packages/emacs-xyz.scm (emacs-docker): New variable.
2019-03-13 23:23:49 +03:00
Oleg Pykhalov 3899ae891c
gnu: Add emacs-docker-tramp.
* gnu/packages/emacs-xyz.scm (emacs-docker-tramp): New variable.
2019-03-13 23:23:49 +03:00
Ricardo Wurmus 7757e6d8b9
gnu: python-numba: Update to 0.42.0.
* gnu/packages/python-xyz.scm (python-numba): Update to 0.42.0.
2019-03-13 20:44:25 +01:00
Ricardo Wurmus f932540773
gnu: python-llvmlite: Update to 0.27.1.
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.27.1.
[inputs]: Update patch for custom LLVM variant.
2019-03-13 20:43:55 +01:00
Ricardo Wurmus 6d37301bd5
gnu: Add python-on-guile.
* gnu/packages/guile-xyz.scm (python-on-guile): New variable.
2019-03-13 20:43:35 +01:00
Ricardo Wurmus 8f05252862
gnu: guile-persist: Install go files to canonical directory.
* gnu/packages/guile-xyz.scm (guile-persist)[arguments]: Patch target
directory for go files in build phase "patch-prefix".
2019-03-13 20:42:23 +01:00
Ricardo Wurmus 8318b3ed8c
gnu: guile-stis-parser: Install go files to canonical directory.
* gnu/packages/guile-xyz.scm (guile-stis-parser)[arguments]: Add build phase
"use-canonical-directory-for-go-files".
2019-03-13 20:41:41 +01:00
Ricardo Wurmus b9445d0b76
gnu: Add kaldi.
* gnu/packages/machine-learning.scm (kaldi): New variable.
2019-03-13 19:30:19 +01:00
Ricardo Wurmus a97796cd53
gnu: Add r-valr.
* gnu/packages/cran.scm (r-valr): New variable.
2019-03-13 17:19:58 +01:00
Ricardo Wurmus 4291f36a22
gnu: Add r-linnorm.
* gnu/packages/bioconductor.scm (r-linnorm): New variable.
2019-03-13 17:13:21 +01:00
Ricardo Wurmus 70daf82f28
gnu: Add python2-argparse.
* gnu/packages/python-xyz.scm (python2-argparse): New variable.
2019-03-13 17:11:09 +01:00
Ricardo Wurmus 3942bf5e4c
gnu: Add r-apcluster.
* gnu/packages/cran.scm (r-apcluster): New variable.
2019-03-13 17:10:53 +01:00
Ricardo Wurmus 51df43408b
gnu: Add r-gmodels.
* gnu/packages/cran.scm (r-gmodels): New variable.
2019-03-13 17:10:41 +01:00
Ricardo Wurmus 0b5d12ccdf
gnu: Add tetoolkit.
* gnu/packages/bioinformatics.scm (tetoolkit): New variable.
2019-03-13 15:14:10 +01:00
Ricardo Wurmus 984a8aa644
gnu: Add r-irkernel.
* gnu/packages/cran.scm (r-irkernel): New variable.
2019-03-13 14:26:45 +01:00
Ricardo Wurmus 664dedd524
gnu: Add r-irdisplay.
* gnu/packages/cran.scm (r-irdisplay): New variable.
2019-03-13 14:26:34 +01:00
Ricardo Wurmus d17186d626
gnu: Add r-repr.
* gnu/packages/cran.scm (r-repr): New variable.
2019-03-13 14:26:25 +01:00
Ricardo Wurmus f313baf0c8
gnu: Add r-pbdzmq.
* gnu/packages/cran.scm (r-pbdzmq): New variable.
2019-03-13 14:26:08 +01:00
Ricardo Wurmus 9475a248fc
gnu: Add r-illuminahumanmethylationepicmanifest.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest):
New variable.
2019-03-13 13:49:20 +01:00
Ricardo Wurmus 09605cb2d1
gnu: Add r-lumi.
* gnu/packages/bioconductor.scm (r-lumi): New variable.
2019-03-13 13:35:40 +01:00
Ricardo Wurmus 5ec5ba0272
gnu: Add r-methylumi.
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
2019-03-13 13:35:33 +01:00
Ricardo Wurmus 0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19.
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
2019-03-13 13:35:18 +01:00
Ricardo Wurmus 86fded86c2
gnu: portaudio: Build position independent code and install more headers.
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
2019-03-13 13:19:06 +01:00
Ricardo Wurmus 0fbaf1956b
gnu: Add r-minfi.
* gnu/packages/bioconductor.scm (r-minfi): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 34a24f95ec
gnu: Add r-bumphunter.
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus f4eac09653
gnu: Add r-siggenes.
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus eed6ff0358
gnu: Add r-illuminaio.
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus f9201d6704
gnu: Add r-geoquery.
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus f088775799
gnu: Add r-scone.
* gnu/packages/bioconductor.scm (r-scone): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus b409c3570f
gnu: Add r-scdd.
* gnu/packages/bioconductor.scm (r-scdd): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 6213e44185
gnu: Add r-noiseq.
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 2d7627cfff
gnu: Add r-monocle.
* gnu/packages/bioconductor.scm (r-monocle): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 925fcdbb79
gnu: Add r-mast.
* gnu/packages/bioconductor.scm (r-mast): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 251e08301a
gnu: Add r-icobra.
* gnu/packages/bioconductor.scm (r-icobra): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 648dbd2702
gnu: Add r-beanplot.
* gnu/packages/cran.scm (r-beanplot): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus 026dd77c63
gnu: Add r-nor1mix.
* gnu/packages/cran.scm (r-nor1mix): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 30f53ec86d
gnu: Add r-ggextra.
* gnu/packages/cran.scm (r-ggextra): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus c27927dbf5
gnu: Add r-colourpicker.
* gnu/packages/cran.scm (r-colourpicker): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 5146a24ece
gnu: Add r-shinyjs.
* gnu/packages/cran.scm (r-shinyjs): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 849350fbce
gnu: Add r-shinybs.
* gnu/packages/cran.scm (r-shinybs): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 704de8f5ee
gnu: Add r-ihw.
* gnu/packages/bioconductor.scm (r-ihw): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 2cb71d81a4
gnu: Add r-lpsymphony.
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 3087a2f37b
gnu: Add r-ebseq.
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus 7ed869f796
gnu: Add r-nbpseq.
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
2019-03-13 13:17:51 +01:00
Nicolas Goaziou 2b6ab17f7d
gnu: wireshark: Update to 3.0.0.
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
2019-03-13 12:31:13 +01:00
Tomáš Čech 77f3d30364
gnu: python-py3status: Update to 3.16.
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
2019-03-13 10:06:19 +01:00
Jack Hill 2f041a4cef
gnu: r-minpack-lm: Fix typo in description.
* gnu/packages/cran.scm (r-minpack-lm)[description]: Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-13 00:37:11 -04:00
Nicolas Goaziou 0d5101c3a3
gnu: rosegarden: Update to 18.12.
* gnu/packages/music.scm (rosegarden): Update to 18.12.
[arguments]: Remove unused flag.
2019-03-12 23:58:52 +01:00
Nicolas Goaziou a269c89457
gnu: musescore: Update to 3.0.5.
* gnu/packages/music.scm (musescore): Update to 3.0.5.
2019-03-12 23:58:52 +01:00
Ludovic Courtès c9c51ac39a
Revert "packages: 'package-input-rewriting' can take a promise."
This reverts commit 7d2be1277b, which
turned out to be unhelpful for the problem at hand:

  https://lists.gnu.org/archive/html/guix-devel/2019-01/msg00486.html
2019-03-12 23:51:32 +01:00
Ricardo Wurmus 29e76f0722
gnu: guile-stis-parser: Override source file name.
* gnu/packages/guile-xyz.scm (guile-stis-parser)[source]: Provide file name
for git checkout.
2019-03-12 22:48:40 +01:00
Ricardo Wurmus 173c99601a
gnu: Add r-deds.
* gnu/packages/bioconductor.scm (r-deds): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus 5570804a69
gnu: Add r-zim.
* gnu/packages/cran.scm (r-zim): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus be0777ba86
gnu: Add r-penalized.
* gnu/packages/cran.scm (r-penalized): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4d1f19e02c
gnu: Add r-nonnest2.
* gnu/packages/cran.scm (r-nonnest2): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus ca3f13704a
gnu: Add r-lavaan.
* gnu/packages/cran.scm (r-lavaan): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus e8be5a0098
gnu: Add r-pbivnorm.
* gnu/packages/cran.scm (r-pbivnorm): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus 9e2ff342aa
gnu: Add r-msir.
* gnu/packages/cran.scm (r-msir): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus 01fe44cbdc
gnu: Add r-moments.
* gnu/packages/cran.scm (r-moments): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4fd994432f
gnu: Add r-minpack-lm.
* gnu/packages/cran.scm (r-minpack-lm): New variable.
2019-03-12 22:47:57 +01:00
Ricardo Wurmus 061a4b6850
gnu: Add r-gamlss-dist.
* gnu/packages/cran.scm (r-gamlss-dist): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus c60e3e10f3
gnu: Add r-drimpute.
* gnu/packages/cran.scm (r-drimpute): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5f673e2c1c
gnu: Add r-cobs.
* gnu/packages/cran.scm (r-cobs): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5fde35b385
gnu: Add r-compositions.
* gnu/packages/cran.scm (r-compositions): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 7d779142ab
gnu: Add r-rarpack.
* gnu/packages/cran.scm (r-rarpack): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 262ab4b17c
gnu: Add r-tensora.
* gnu/packages/cran.scm (r-tensora): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 8cd3f49d46
gnu: Add r-bayesm.
* gnu/packages/cran.scm (r-bayesm): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 1901a53241
gnu: Add r-outliers.
* gnu/packages/cran.scm (r-outliers): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4af186a963
gnu: Add r-upsetr.
* gnu/packages/cran.scm (r-upsetr): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus f3233beec5
gnu: Add r-blockmodeling.
* gnu/packages/cran.scm (r-blockmodeling): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus c691c607d7
gnu: Add r-dorng.
* gnu/packages/cran.scm (r-dorng): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4dc2ecc279
gnu: r-qvalue: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-qvalue): Move from here...
* gnu/packages/bioconductor.scm (r-qvalue): ...to here.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 557a1089c6
gnu: Add r-hsmmsinglecell.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): New variable.
2019-03-12 22:47:56 +01:00
Ricardo Wurmus 12d73f9c3c
gnu: Add guile-persist.
* gnu/packages/guile-xyz.scm (guile-persist): New variable.
2019-03-12 22:47:56 +01:00
Oleg Pykhalov e80a809f1f
gnu: Add tmux-xpanes.
* gnu/packages/tmux.scm (tmux-xpanes): New variable.
2019-03-12 22:41:31 +03:00
Brian Leung 94a33ab899
gnu: Add emacs-eshell-bookmark.
* gnu/packages/emacs-xyz.scm (emacs-eshell-bookmark): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-12 21:56:09 +03:00
Julien Lepiller 2ffec22eeb
gnu: python-pygit2: Update to 0.27.4.
* gnu/packages/python-xyz.scm (python-pygit2): Update to 0.27.4.
(python-pygit2)[arguments]: Disable tests.
2019-03-12 18:56:34 +01:00
Efraim Flashner 7458ceaca8
gnu: inxi-minimal: Declare source-file-name.
* gnu/packages/admin.scm (inxi-minimal)[source]: Add missing field.
2019-03-12 17:29:19 +02:00
Tobias Geerinckx-Rice 49fb2d0922
gnu: inxi-minimal: Update to 3.0.22-1.
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.22-1.
2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 17ab1e43a6
gnu: perl-anyevent: Update to 7.15.
* gnu/packages/libevent.scm (perl-anyevent): Update to 7.15.
2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 2f805e97f2
gnu: aide: Update to 0.16.1.
* gnu/packages/admin.scm (aide): Update to 0.16.1.
2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 737300be4b
gnu: aide: Move project home.
* gnu/packages/admin.scm (aide)[source, home-page]: Update.
2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice 8dbd8e426c
gnu: aspell-dict-it: Update to 2.4-20070901-0.
* gnu/packages/aspell.scm (aspell-dict-it): Update to 2.4-20070901-0.
2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice b4ed7c3e8d
gnu: libinput: Don't use NAME in source URI.
* gnu/packages/freedesktop.scm (libinput)[source]: Hard-code NAME.
2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice e3df159edc
gnu: geos: Update to 3.7.1.
* gnu/packages/geo.scm (geos): Update to 3.7.1.
2019-03-12 15:26:19 +01:00
Rutger Helling 47b3eed821
gnu: vulkan-headers: Update to 1.103.
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.103.
* gnu/packages/vulkan.scm (vulkan-loader): Adjust version.
* gnu/packages/vulkan.scm (vulkan-tools): Adjust version.
2019-03-12 11:20:41 +01:00
Pierre Neidhardt 75dabac633
gnu: Add emacs-lisp-extra-font-lock.
* gnu/packages/emacs-xyz.scm (emacs-lisp-extra-font-lock): New variable.
2019-03-12 09:28:01 +01:00
Pierre Neidhardt b6180f93bd
gnu: emacs-suggest: Update to 0.7.
* gnu/packages/emacs-xyz.scm (emacs-suggest): Update to 0.7.
2019-03-12 09:24:31 +01:00
Pierre Neidhardt a922b2aee2
gnu: emacs-helm: Update to 3.1.
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.1.
2019-03-12 08:06:50 +01:00
Tobias Geerinckx-Rice 2ee05bb9d4
gnu: freedink-engine: Update to 109.6.
* gnu/packages/games.scm (freedink-engine): Update to 109.6.
2019-03-12 02:22:37 +01:00
Tobias Geerinckx-Rice 98704a8133
gnu: libmanette: Update to 0.2.2.
* gnu/packages/games.scm (libmanette): Update to 0.2.2.
2019-03-12 02:22:37 +01:00
Tobias Geerinckx-Rice a554462123
gnu: kicad-symbols: Use GIT-FILE-NAME.
* packages/engineering.scm (kicad-symbols)[source]: Use GIT-FILE-NAME.
2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 65bab0120b
gnu: kicad-symbols: Update to 5.0.2.
* gnu/packages/engineering.scm (kicad-symbols): Update to 5.0.2.
2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice b13b7143d7
gnu: kicad: Don't use NAME in source URI.
* gnu/packages/engineering.scm (kicad)[source]: Hard-code NAME.
2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 23df8f3578
gnu: kicad: Update to 5.0.2.
* gnu/packages/engineering.scm (kicad): Update to 5.0.2.
2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 3d21f1ea0f
gnu: gtkwave: Update to 3.3.99.
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.99.
2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 5cfe650b9d
gnu: python-sqlalchemy: Use HTTPS home page.
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 6d04f694dc
gnu: python-sqlalchemy: Update to 1.3.1.
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 96ec46047b
gnu: gcompris-qt: Update to 0.96.
* gnu/packages/education.scm (gcompris-qt): Update to 0.96.
[inputs]: Add openssl.
2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 909404b571
gnu: python-sql: Update to 1.0.0.
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 99e690a59a
gnu: python-pyodbc: Update to 4.0.25.
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 72b7de49b4
gnu: python-psycopg2: Update to 2.7.7.
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 49596a5413
gnu: perl-dbd-mysql: Update to 4.050.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 2f813be342
gnu: perl-sql-abstract: Update to 1.86.
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 55f4282e0c
gnu: guile-colorized: Move project home.
* gnu/packages/guile-xyz.scm (guile-colorized)[source, home-page]: Update.
2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 1340ce2899
gnu: guile-colorized: Don't use unstable tarball.
* gnu/packages/guile-xyz.scm (guile-colorized)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-12 02:22:33 +01:00
Brian Leung 1bc24bbf00
gnu: Add emacs-debpaste.
* gnu/packages/emacs-xyz.scm (emacs-debpaste): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-03-11 23:12:26 +01:00
Brian Leung 6f93b525d3
gnu: Add emacs-xml-rpc.
* gnu/packages/emacs-xyz.scm (emacs-xml-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-03-11 23:12:26 +01:00
Marius Bakke e440a75640
gnu: libxcomposite: Update to 0.4.5.
* gnu/packages/xorg.scm (libxcomposite): Update to 0.4.5.
2019-03-11 21:22:24 +01:00
Marius Bakke e1c6102907
gnu: libxcursor: Update to 1.2.0.
* gnu/packages/xorg.scm (libxcursor): Update to 1.2.0.
2019-03-11 21:22:01 +01:00
Rutger Helling 7959ccac3f
gnu: swaylock: Fix indentation.
* gnu/packages/wm.scm (swaylock): Fix indentation.
2019-03-11 20:31:30 +01:00
Rutger Helling b0805973cd
gnu: Add swaylock.
* gnu/packages/wm.scm (swaylock): New variable.
2019-03-11 20:28:41 +01:00
Rutger Helling 06ae5efcf3
gnu: Add swayidle.
* gnu/packages/wm.scm (swayidle): New variable.
2019-03-11 20:28:41 +01:00
Rutger Helling 2ff844f090
gnu: Add sway.
* gnu/packages/wm.scm (sway): New variable.
2019-03-11 20:28:41 +01:00
Rutger Helling eea969cf8d
gnu: Add wlroots.
* gnu/packages/wm.scm (wlroots): New variable.
2019-03-11 20:28:41 +01:00
Pierre Neidhardt 684626763f
gnu: emacs-magit: Fix perl path in dedicated variable.
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Do it.
2019-03-11 19:01:49 +01:00
Pierre Neidhardt 842e66c573
gnu: Add emacs-lorem-ipsum.
* gnu/packages/emacs-xyz.scm (emacs-lorem-ipsum): New variable.
2019-03-11 18:46:25 +01:00
Oleg Pykhalov 34e3d028b9
gnu: emacs-json-reformat: Fix test.
This patch deletes a test which tries to compare JSON objects order.

* gnu/packages/emacs-xyz.scm (emacs-json-reformat): Delete
'json-reformat-test:json-reformat-region' test.
2019-03-11 19:52:39 +03:00
Ricardo Wurmus 4948c23677
gnu: r-with-tests: Update to 3.5.3.
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.3.
2019-03-11 15:25:27 +01:00
Tobias Geerinckx-Rice e445bd1607
gnu: s6-linux-utils: Update to 2.5.0.1.
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.0.1.
2019-03-11 13:25:15 +01:00
Tobias Geerinckx-Rice 8dc458bb18
gnu: s6-linux-init: Update to 0.4.0.1.
* gnu/packages/skarnet.scm (s6-linux-init): Update to 0.4.0.1.
2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice b673d2d793
gnu: s6-portable-utils: Update to 2.2.1.3.
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.1.3.
2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice 0953b09aa8
gnu: s6-rc: Update to 0.5.0.0.
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.0.0.
2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice 8722fd43d4
gnu: s6-networking: Update to 2.3.0.4.
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.0.4.
2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice ce3262e9a3
gnu: s6-dns: Update to 2.3.0.2.
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.0.2.
2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 6954594d5c
gnu: s6: Update to 2.8.0.0.
* gnu/packages/skarnet.scm (s6): Update to 2.8.0.0.
2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 5c9bf737c4
gnu: execline: Update to 2.5.1.0.
* gnu/packages/skarnet.scm (execline): Update to 2.5.1.0.
2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice a699a81b84
gnu: skalibs: Update to 2.8.0.1.
* gnu/packages/skarnet.scm (skalibs): Update to 2.8.0.1.
2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 5e5bd81843
gnu: picocom: Fix description.
* gnu/packages/terminals.scm (picocom)[synopsis]: Shorten.
[description]: Properly introduce.
2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 33238b5520
gnu: picocom: Update to 3.1.
* gnu/packages/terminals.scm (picocom): Update to 3.1.
2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 130c12c9b9
gnu: perl-image-exiftool: Update to 11.31.
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.31.
2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 0234f4af27
gnu: perl-image-exiftool: Add upstream URL.
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Also download
from the home page.
2019-03-11 13:25:11 +01:00
Mark H Weaver 3edd7a3f4c
gnu: linux-libre: Update to 5.0.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.1.
(%linux-libre-hash): Update hash.
2019-03-11 07:14:58 -04:00
Mark H Weaver 32ede5bbf9
gnu: linux-libre@4.19: Update to 4.19.28.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.28.
(%linux-libre-4.19-hash): Update hash.
2019-03-11 07:14:01 -04:00
Efraim Flashner 2206f23679
gnu: Add eternalterminal.
* gnu/packages/terminals.scm (eternalterminal): New variable.
2019-03-11 10:30:58 +02:00
Efraim Flashner a5c8460a6d
gnu: crawl: Build without SSE only on some architecures.
This is a follow-up to b89284407f.

* gnu/packages/games.scm (crawl)[arguments]: Remove custom 'patch-flags
phase, add make-flag on non-x86* architectures to build without SSE.
2019-03-11 10:06:29 +02:00
Tobias Geerinckx-Rice 93a72fa7c9
gnu: xvid: Update to 1.3.5.
* gnu/packages/video.scm (xvid): Update to 1.3.5.
2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice d05c14dfc9
gnu: python-acme, certbot: Update to 0.32.0.
* gnu/packages/tls.scm (python-acme): Update to 0.32.0.
(certbot)[source]: Update hash.
[native-inputs]: Replace python-nose with python-pytest.
[propagated-inputs]: Add python-cryptography.
2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice 4d34fe4681
gnu: avidemux: Update to 2.7.2.
* gnu/packages/video.scm (avidemux): Update to 2.7.2.
[arguments]: Update version of included ffmpeg.
2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice 642de36b9e
gnu: avidemux: Factorise ffmpeg version.
* gnu/packages/video.scm (avidemux)[arguments]: Move oft-repeated
hard-coded ffmpeg version number to a single let-bound variable.
2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 7d3ac6c08e
gnu: avidemux: Don't use NAME in source URI.
* gnu/packages/video.scm (avidemux)[source]: Hard-code NAME.
2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 129294e748
gnu: youtube-dl: Update to 2019.03.09.
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.09.
2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 585be42f46
gnu: texmaker: Update to 5.0.3.
* gnu/packages/tex.scm (texmaker): Update to 5.0.3.
2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice dbfb24824b
gnu: stunnel: Update to 5.50.
* gnu/packages/web.scm (stunnel): Update to 5.50.
2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice a9644c5a49
gnu: you-get: Update to 0.4.1270.
* gnu/packages/video.scm (you-get): Update to 0.4.1270.
2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice 266cd19eb9
gnu: nginx-documentation: Update to 2019-03-01-2345-7ef11708457e.
* gnu/packages/web.scm (nginx-documentation): Update to 2019-03-01-2345-7ef11708457e.
[arguments]: Simplify substitution.
2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice fd46742dd2
gnu: nginx: Update to 1.15.9.
* gnu/packages/web.scm (nginx): Update to 1.15.9.
2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice 0330d6b2bf
gnu: xf86-video-ati: Update to 19.0.0.
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.0.
[source]: Re-indent.
2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice 77ad8ec4fc
gnu: xf86-video-amdgpu: Update to 19.0.0.
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.0.
[source]: Re-indent.
2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice c170080689
gnu: console-setup: Update to 1.190.
* gnu/packages/xorg.scm (console-setup): Update to 1.190.
2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice 0189045904
gnu: snd: Update to 19.2.
* gnu/packages/audio.scm (snd): Update to 19.2.
2019-03-11 02:08:00 +01:00
Ludovic Courtès 45fef894eb
gnu: gnome-shell: Avoid top-level reference to inkscape.
Fixes <https://bugs.gnu.org/34806>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/gnome.scm (gnome-shell)[source](snippet): Remove
reference to INKSCAPE.  Instead, simply copy the SVG file to
data/theme.
[arguments]: Add 'convert-logo-to-png' phase.
[native-inputs]: Add INKSCAPE.
2019-03-10 23:41:33 +01:00
Tobias Geerinckx-Rice 5ae5932b2f
gnu: ansible: Update to 2.7.8 [fixes CVE-2019-3828].
* gnu/packages/admin.scm (ansible): Update to 2.7.8.
2019-03-10 23:00:08 +01:00
Marius Bakke 7fda7b8fad
gnu: pugixml: Build as shared library.
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (pugixml)[source](patches): New field.
[arguments]: Instruct the build system to create a shared rather than static
library.
[native-inputs]: Add PKG-CONFIG.
2019-03-10 21:44:25 +01:00
Marius Bakke e2bdf60982
gnu: FileZilla: Update to 3.41.1.
* gnu/packages/ftp.scm (filezilla): Update to 3.41.1.
2019-03-10 21:44:25 +01:00
Marius Bakke 6324727770
gnu: pugixml is a regular input.
* gnu/packages/emulators.scm (mame)[native-inputs]: Move PUGIXML ...
[inputs]: ... here.
* gnu/packages/ftp.scm (filezilla)[native-inputs, inputs]: Likewise.
2019-03-10 21:44:25 +01:00
Marius Bakke a4de1a651e
gnu: double-conversion: Update to 3.1.3.
* gnu/packages/maths.scm (double-conversion): Update to 3.1.3.
[source](uri): Adjust for version tag prefix.
2019-03-10 18:38:51 +01:00
Marius Bakke 55f80e1592
gnu: libvdpau: Update to 1.2.
* gnu/packages/video.scm (libvdpau): Update to 1.2.
[source](uri): Adjust for new URL.
2019-03-10 18:38:51 +01:00
Marius Bakke 792737e9ab
gnu: subversion: Update to 1.10.4 [fixes CVE-2018-11803].
* gnu/packages/version-control.scm (subversion): Update to 1.10.4.
2019-03-10 18:38:51 +01:00
Marius Bakke 1c4724634c
gnu: libuninameslist: Update to 20190305.
* gnu/packages/fontutils.scm (libuninameslist): Update to 20190305.
2019-03-10 18:38:50 +01:00
Marius Bakke 8c5533b582
Merge branch 'master' into staging 2019-03-10 18:38:25 +01:00
Marius Bakke 41ce92501b
gnu: xfd: Update to 1.1.3.
* gnu/packages/xorg.scm (xfd): Update to 1.1.3.
2019-03-10 18:30:51 +01:00
Marius Bakke 06e3ed5d19
gnu: xprop: Update to 1.2.4.
* gnu/packages/xorg.scm (xprop): Update to 1.2.4.
2019-03-10 18:30:51 +01:00
Marius Bakke df8dbfb30b
gnu: notmuch: Update to 0.28.3.
* gnu/packages/mail.scm (notmuch): Update to 0.28.3.
2019-03-10 18:30:51 +01:00
Marius Bakke 2c0cf9eec7
gnu: xapian: Update to 1.4.11.
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11.
2019-03-10 18:30:51 +01:00
Marius Bakke 511930c294
gnu: libmspack: Update to 0.10.1.
* gnu/packages/compression.scm (libmspack): Update to 0.10.1.
2019-03-10 18:30:50 +01:00
Marius Bakke 755226e9c2
gnu: python-dask: Update to 1.1.4.
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4.
2019-03-10 18:30:50 +01:00
Marius Bakke f1fff66be5
gnu: elogind: Update to 239.4.
* gnu/packages/freedesktop.scm (elogind): Update to 239.4.
2019-03-10 18:30:50 +01:00
Tobias Geerinckx-Rice 6845ab5204
gnu: Import (gnu packages image) in (gnu packages scanner).
This is a follow-up to commit 10bd2889d2.

* gnu/packages/scanner.scm: #:use-module (gnu packages image).
2019-03-10 17:12:16 +01:00
Tobias Geerinckx-Rice 10bd2889d2
gnu: sane-backends: Support PNG scanimage output.
* gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng.
2019-03-10 16:33:55 +01:00
Ricardo Wurmus ca32afacf9
gnu: Add btanks.
* gnu/packages/games.scm (btanks): New variable.
2019-03-10 14:04:28 +01:00
Ricardo Wurmus d7764d42e4
gnu: Add libsmpeg-with-sdl1.
* gnu/packages/video.scm (libsmpeg-with-sdl1): New variable.
(libsmpeg)[version]: Change to 0.4.5-401.
2019-03-10 14:04:28 +01:00
Ricardo Wurmus 8ada024ba6
gnu: Add 4dtris.
* gnu/packages/games.scm (4dtris): New variable.
2019-03-10 14:04:28 +01:00
Ricardo Wurmus c06709b8a4
gnu: Add slingshot.
* gnu/packages/games.scm (slingshot): New variable.
2019-03-10 14:04:28 +01:00
Ricardo Wurmus 05487ed8e6
gnu: scons: Update to 3.0.4.
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice 4eb57ca883
gnu: Add opensmtpd-next.
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice 380384e419
gnu: ibus: Update Unicode data to 12.0.0.
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
2019-03-10 13:37:18 +01:00
Pierre Neidhardt 2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build.
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
2019-03-09 12:30:24 +01:00
Ricardo Wurmus 7d4cab7473
gnu: Add openfst.
* gnu/packages/machine-learning.scm (openfst): New variable.
2019-03-09 10:43:37 +01:00
Pierre Neidhardt 983550692d
gnu: Add hyperledger-fabric.
* gnu/local.mk (hyperledger): New variable.
2019-03-09 10:15:46 +01:00
Ricardo Wurmus 2b0c755d19
gnu: gnome-shell: Update to 3.28.2.
* gnu/packages/gnome.scm (gnome-shell): Update to 3.28.2.
[source]: Update snippet.
[build-system]: Use meson-build-system.
[arguments]: Disable systemd; add build phases "fix-keysdir" and "pre-check";
remove "rebuild-css" phase; remove custom "install" phase; wrap also with
LD_LIBRARY_PATH.
[native-inputs]: Add desktop-file-utils, sassc, and xorg-server.
[inputs]: Remove readline.
2019-03-09 08:48:25 +01:00
Tobias Geerinckx-Rice 373abfb398
gnu: lynis: Update to 2.7.2.
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7b957a3344
gnu: youtube-viewer: Update to "3.5.4.
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 37fc44eab9
gnu: dovecot: Avoid unnecessary patching.
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice f762e49f28
gnu: dovecot: Indent arguments.
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7969751f54
gnu: i3lock-color: Update to 2.12.c.
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice f45cc966ba
gnu: i3lock-color: Don't use unstable tarball.
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball.
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-09 02:33:30 +01:00
Ricardo Wurmus 74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt.
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
2019-03-08 23:18:56 +01:00
Ricardo Wurmus 8b6acb1f20
gnu: blast+: Update to 2.7.1.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-03-08 23:00:07 +01:00
Ricardo Wurmus f87dcb4d75
gnu: Add texlive-latex-pdfx.
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
2019-03-08 21:49:25 +01:00
Ricardo Wurmus cafd4d387b
gnu: Add texlive-latex-xmpincl.
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
2019-03-08 21:48:19 +01:00
Ricardo Wurmus 847768b9cc
gnu: Add translate2geda.
* gnu/packages/engineering.scm (translate2geda): New variable.
2019-03-08 21:45:29 +01:00
Ricardo Wurmus a734da8675
gnu: Add rkrlv2.
* gnu/packages/music.scm (rkrlv2): New variable.
2019-03-08 21:02:49 +01:00
Danny Milosavljevic eb6ef893e8
gnu: fc-host-tools: Update to 10.
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
2019-03-08 19:33:04 +01:00
Efraim Flashner 606c198788
gnu: crawl: Find all the included headers.
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
2019-03-08 17:22:29 +02:00
Efraim Flashner b89284407f
gnu: crawl: Don't assume system architecture.
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
2019-03-08 17:22:29 +02:00
Efraim Flashner fc7d6bc60d
gnu: crawl: Build with python3-wrapper.
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
2019-03-08 17:22:26 +02:00
Vagrant Cascadian fb0aeaacea
gnu: u-boot: Remove openssl input.
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-08 12:31:37 +01:00
Rutger Helling 75f0bda71a
gnu: flatpak: Add more dependencies.
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
2019-03-08 11:50:56 +01:00
Ricardo Wurmus daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
2019-03-08 09:30:00 +01:00
Ricardo Wurmus 183b6575e7
gnu: r-mzr: Update to 2.16.2.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
2019-03-08 09:14:01 +01:00
Ricardo Wurmus 6453d7aecc
gnu: r-gviz: Update to 1.26.5.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus 101dcc29d3
gnu: r-ensembldb: Update to 2.6.7.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus d3713237c5
gnu: r-annotationhub: Update to 2.14.4.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus 53e7f028ed
gnu: r-rhtslib: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus d493043daf
gnu: r-rtracklayer: Update to 1.42.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
2019-03-08 09:14:01 +01:00
Ricardo Wurmus 57f40dc220
gnu: r-rsamtools: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus 58209b1e21
gnu: r-biocparallel: Update to 1.16.6.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
2019-03-08 09:14:00 +01:00
Ricardo Wurmus 8972989e10
gnu: r-dexseq: Update to 1.28.2.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice 792d3ed7eb
gnu: man-pages: Update to 5.00.
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice 13b1fb5c92
gnu: dovecot: Update to 2.3.5.
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice 2fa1a3a808
gnu: dovecot: Don't use NAME in source URI.
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
2019-03-08 01:34:40 +01:00
Ricardo Wurmus 933dad9156
gnu: Add mruby.
* gnu/packages/ruby.scm (mruby): New variable.
2019-03-08 00:07:45 +01:00
Ricardo Wurmus 20662a3020
gnu: r-ggmap: Update to 3.0.0.
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus 8f37f53837
gnu: r-readxl: Update to 1.3.0.
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus f544ab3379
gnu: r-sys: Update to 3.0.
* gnu/packages/cran.scm (r-sys): Update to 3.0.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus 790db519f4
gnu: r-servr: Update to 0.13.
* gnu/packages/cran.scm (r-servr): Update to 0.13.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus e89d54278d
gnu: r-flextable: Update to 0.5.1.
* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
2019-03-07 23:52:44 +01:00
Ricardo Wurmus e190d9af6c
gnu: r-proxy: Update to 0.4-23.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus bef78244de
gnu: r-haven: Update to 2.1.0.
* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus 59c513422c
gnu: r-emdbook: Update to 1.3.11.
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus 937e15571c
gnu: r-rmysql: Update to 0.10.17.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus 2170a36c3b
gnu: r-gower: Update to 0.2.0.
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus 6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0.
* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus 532b359865
gnu: r-jomo: Update to 2.6-7.
* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
2019-03-07 23:52:43 +01:00
Ricardo Wurmus d2cd541cc7
gnu: r-mice: Update to 3.4.0.
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus 22777c8657
gnu: r-xfun: Update to 0.5.
* gnu/packages/cran.scm (r-xfun): Update to 0.5.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus 87bb1b8c9e
gnu: r-metap: Update to 1.1.
* gnu/packages/cran.scm (r-metap): Update to 1.1.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus d8787b3387
gnu: r-ifultools: Update to 2.0-5.
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9.
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus 00fb320392
gnu: r-later: Update to 0.8.0.
* gnu/packages/cran.scm (r-later): Update to 0.8.0.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus 8b2c80b8a3
gnu: r-vim: Update to 4.8.0.
* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus b9b1041324
gnu: r-fnn: Update to 1.1.3.
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
2019-03-07 23:52:42 +01:00
Ricardo Wurmus ea010aa31e
gnu: r-arules: Update to 1.6-3.
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus f5ce1dcce2
gnu: r-zip: Update to 2.0.0.
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus bbe9421174
gnu: r-maptools: Update to 0.9-5.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus d3f22f0aea
gnu: r-reticulate: Update to 1.11.1.
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus fd1a17a522
gnu: r-officer: Update to 0.3.3.
* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
2019-03-07 23:52:41 +01:00
Ricardo Wurmus 7754557090
gnu: r-prediction: Update to 0.3.6.2.
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
2019-03-07 23:52:41 +01:00