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Author SHA1 Message Date
Tobias Geerinckx-Rice 5ecd671731
gnu: gmime: Update to 2.6.23. 
* gnu/packages/mail.scm (gmime): Update to 2.6.23.
 2017-03-31 04:06:06 +02:00
Efraim Flashner 4fbed7494d
gnu: rapidjson: Fix building on aarch64. 
* gnu/packages/web.scm (rapidjson)[arguments]: Add custom phase for
aarch64 to fix -march detection.
 2017-03-31 01:05:28 +03:00
Tobias Geerinckx-Rice 3c2b833334
gnu: freedoom: Update to 0.11.2. 
* gnu/packages/games.scm (freedoom): Update to 0.11.2.
 2017-03-30 23:52:17 +02:00
Ludovic Courtès dca96ad395
gnu: mlocate: Update URLs. 
* gnu/packages/search.scm (mlocate)[source, home-page]: Change URLs to
pagure.{org,io}.
 2017-03-30 23:40:22 +02:00
Ludovic Courtès 402b03e620
gnu: ruby-concurrent: Work around test failure on ARM. 
* gnu/packages/patches/ruby-concurrent-test-arm.patch: New file.
* gnu/packages/ruby.scm (ruby-concurrent)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-30 23:40:20 +02:00
Ludovic Courtès aef81a81b8
gnu: guix: Include the aarch64 bootstrap Guile. 
* gnu/packages/package-management.scm (boot-guile-uri): Add case for aarch64.
(guix-0.12.0)[arguments] <copy-bootstrap-guile>: Handle aarch64.
[inputs]: Add "boot-guile/aarch64".
 2017-03-30 23:40:17 +02:00
Leo Famulari 7044301381
gnu: sysstat: Update to 11.4.3. 
* gnu/packages/linux.scm (sysstat): Update to 11.4.3.
 2017-03-30 17:09:29 -04:00
Marius Bakke 84157bb8bf
Merge branch 'master' into core-updates 
Most conflicts are from 6fd52309b8.
 2017-03-30 22:59:53 +02:00
Mark H Weaver 03d0aa8b22
gnu: linux-libre: Update to 4.10.7. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.7.
(%linux-libre-hash): Update hash.
 2017-03-30 16:43:00 -04:00
Mark H Weaver f62acf1eb7
gnu: linux-libre@4.9: Update to 4.9.19. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.19.
 2017-03-30 16:42:23 -04:00
Mark H Weaver 7f79df4ae8
gnu: linux-libre@4.4: Update to 4.4.58. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.58.
 2017-03-30 16:41:40 -04:00
Marius Bakke fa63939acb
gnu: chez-scheme: Fix build failure in 'reset-gzip-timestamps' phase. 
* gnu/packages/chez.scm (chez-scheme)[arguments]: Add 'make-manpages-writable'
phase.
 2017-03-30 22:39:24 +02:00
Marius Bakke 2513aac170
gnu: kodi: Update to 18.0_alpha-1-ec5d53d. 
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-1-ec5d53d.
[inputs]: Replace LIBYAJL with RAPIDJSON.
 2017-03-30 22:32:46 +02:00
Marius Bakke 4951d2f386
gnu: kodi: Remove silly wrapper script. 
* gnu/packages/kodi.scm (kodi)[arguments]: Add SYSTEM_LDFLAGS in
configure-flags. Remove 'wrap' phase. Enable previously failing tests.
 2017-03-30 22:32:37 +02:00
Marius Bakke 8c0117371a
gnu: kodi: Embed full path to tzdata. 
* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution for tzdata in
'patch-stuff' phase.
[inputs]: Add TZDATA.
 2017-03-30 22:32:37 +02:00
Marius Bakke c3c25082e8
gnu: ceph: Update to 12.0.1. 
* gnu/packages/storage.scm (ceph): Update to 12.0.1.
[arguments]: Disable one new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust context.
 2017-03-30 22:32:36 +02:00
Marius Bakke 2657fb6381
gnu: xcb-util-cursor: Update to 0.1.3. 
* gnu/packages/xorg.scm (xcb-util-cursor): Update to 0.1.3.
[source]: Change to bz2 archive.
 2017-03-30 22:31:29 +02:00
Marius Bakke ece42cb381
gnu: libevdev: Update to 1.5.6. 
* gnu/packages/xorg.scm (libevdev): Update to 1.5.6.
 2017-03-30 22:31:29 +02:00
Marius Bakke bdde64b079
gnu: libinput: Update to 1.7.0. 
* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.7.0.
 2017-03-30 22:31:28 +02:00
Marius Bakke 941a38b66e
gnu: exempi: Update to 2.4.2. 
* gnu/packages/freedesktop.scm (exempi): Update to 2.4.2.
 2017-03-30 22:31:28 +02:00
Leo Famulari 16ab9824b2
gnu: mbedtls-apache: Update to 2.4.2 [fixes CVE-2017-2784, SLOTH and others]. 
See 'ChangeLog' in the source code distribution for more information about
security-related bug fixes.

* gnu/packages/tls.scm (mbedtls-apache): Update to 2.4.2.
 2017-03-30 14:35:41 -04:00
Ricardo Wurmus 67656b7a86
gnu: propeller-binutils: Use flex 2.6.1. 
* gnu/packages/embedded.scm (propeller-binutils)[native-inputs]: Replace
"flex" with "flex-2.6.1".
 2017-03-30 17:34:34 +02:00
Kei Kebreau e3b2e943b8
gnu: milkytracker: Update to 1.0.0. 
* gnu/packages/music.scm (milkytracker): Update to 1.0.0.
[source]: Change uri; add file-name; add snippet to remove non-FSDG
compliant data.
[build-system]: Change from gnu-build-system to cmake-build-system.
[arguments]: Remove #:make-flags; disable tests (which are no longer
present).
[inputs]: Change sdl to sdl2.
 2017-03-30 10:18:22 -04:00
Ludovic Courtès 314120f2be
gnu: guix: Update development snapshot. 
The previous snapshot lacked the FTP download fix from commit
6dfd683dc7.  Thus, the daemon's "download"
built-in would fail to download over FTP.

* gnu/packages/package-management.scm (guix-devel): Update to aabece2.
 2017-03-30 11:50:45 +02:00
Ludovic Courtès aabece2ef8
gnu: guile-git, guile-bytestructures: Switch to Guile 2.2. 
* gnu/packages/guile.scm (guile-bytestructures)[inputs]: Replace
GUILE-2.0 with GUILE-2.2.
(guile-git)[inputs]: Likewise.
 2017-03-30 11:15:17 +02:00
Ludovic Courtès e93f8d9849
gnu: guile-git: Update to latest Git snapshot. 
* gnu/packages/guile.scm (guile-git): Update to 96dfb3b.
[arguments]: Remove #:parallel-tests?.
 2017-03-30 11:15:17 +02:00
Andy Patterson 58b240783c
gnu: ccl: Forcibly set CCL_DEFAULT_DIRECTORY. 
* gnu/packages/lisp.scm (ccl)[arguments]: Unconditionally set the
CCL_DEFAULT_DIRECTORY environment variable in the wrapper script.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-30 11:15:17 +02:00
Andy Patterson fc7d5a34d0
gnu: ccl: Install included libraries. 
* gnu/packages/lisp.scm (ccl)[arguments]: Add 'srfi-26' to '#:modules', and
copy the included libraries to the output in the 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-30 11:15:17 +02:00
Arun Isaac c86c19914a
gnu: Add emacs-linum-relative. 
* gnu/packages/emacs.scm (emacs-linum-relative): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-30 11:15:17 +02:00
Vasile Dumitrascu 239cf024b4
gnu: Add emacs-highlight-sexp. 
* gnu/packages/emacs (emacs-highlight-sexp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-30 11:15:16 +02:00
Vasile Dumitrascu 6a91c5f2dc
gnu: Add emacs-ox-twbs. 
* gnu/packages/emacs.scm (emacs-ox-twbs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-30 11:15:16 +02:00
Vasile Dumitrascu 6b7e336265
gnu: Add emacs-idle-highlight. 
* gnu/packages/emacs.scm (emacs-idle-highlight): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-30 11:15:16 +02:00
Ricardo Wurmus fa702e1a29
gnu: discrover: Add missing includes. 
* gnu/packages/bioinformatics.scm (discrover)[arguments]: Add build phase
"add-missing-includes" to include "random" headers.
 2017-03-30 10:35:54 +02:00
Ricardo Wurmus 0d2c0562b8
gnu: stringtie: Remove typedef conflict. 
* gnu/packages/bioinformatics.scm (stringtie)[arguments]: Remove conflicting
typedef in a new build phase "remove-duplicate-typedef".
 2017-03-30 10:35:53 +02:00
Ricardo Wurmus c3913fac57
gnu: powertabeditor: Link with pthread. 
* gnu/packages/music.scm (powertabeditor)[arguments]: Link with "-lpthread" to
fix build with GCC 5.
 2017-03-30 10:35:53 +02:00
Ricardo Wurmus e32f8dad94
gnu: hugs: Build with GCC 4.9. 
* gnu/packages/hugs.scm (hugs)[native-inputs]: Add "gcc-4.9".
 2017-03-30 10:35:52 +02:00
Leo Famulari 06e8d0c8e5
gnu: dash: Update to 0.5.9.1. 
* gnu/packages/shells.scm (dash): Update to 0.5.9.1.
[source]: Use git-fetch.
[native-inputs]: Add autoconf and automake.
[arguments]: Add 'bootstrap' phase.
 2017-03-30 03:37:31 -04:00
Eric Bavier 77310a1c2d
gnu: qutebrowser: Upgrade to 0.10.1. 
* gnu/packages/web.scm (qutebrowser): Upgrade to 0.10.1.
 2017-03-29 21:04:48 -05:00
Eric Bavier bf5b6fb294
gnu: thefuck: Upgrade to 3.15 and enable tests. 
* gnu/packages/patches/thefuck-test-environ.patch: New patch.
* gnu/packages/admin.scm (thefuck): Upgrade to 3.15.
[source]: Use patch.
[arguments]: Remove '#:tests? #f'.  Move 'check' phase after 'install'.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2017-03-29 20:51:06 -05:00
Tobias Geerinckx-Rice 6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
 2017-03-30 01:30:16 +02:00
Tobias Geerinckx-Rice c219997a14
gnu: orc: Update home page. 
* gnu/packages/gstreamer.scm (orc)[home-page]: Update.
 2017-03-30 01:29:33 +02:00
Mark H Weaver 2abf6371cc
gnu: icecat: Add fixes from mozilla-esr45; use skia by default. 
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes from
the upstream mozilla-esr45 repository.
[arguments]: Add 'use-skia-by-default' phase.
 2017-03-29 19:03:38 -04:00
Ludovic Courtès 755c5ba85c
gnu: wordnet: Build with the default GCC. 
* gnu/packages/wordnet.scm (wordnet)[native-inputs]: Remove.
 2017-03-29 22:52:02 +02:00
Leo Famulari 5e92341471
gnu: python-enum34: Update to 1.1.6. 
* gnu/packages/python.scm (python-enum34, python2-enum34): Update to 1.1.6.
[arguments]: Remove custom test phase.
 2017-03-29 16:39:04 -04:00
Ludovic Courtès 2fa077f316
gnu: guile-reader: Build with gperf 3.0. 
* gnu/packages/guile.scm (guile-reader)[native-inputs]: Use GPERF-3.0
instead of GPERF.
 2017-03-29 22:29:49 +02:00
Kei Kebreau 9342c5a0bc
gnu: schismtracker: Update to 20160913. 
* gnu/packages/music.scm (schismtracker): Update to 20160913.
[source]: Update snippet for version 20160913.
 2017-03-29 16:23:59 -04:00
Tobias Geerinckx-Rice a29d329fa8
gnu: games: Don't MKDIR before INSTALL-FILE. 
* gnu/packages/games.scm (glkterm, glulxe, grue-hunter)[arguments]:
Remove spurious MKDIRs.
 2017-03-29 22:06:01 +02:00
Tobias Geerinckx-Rice 05e0ac46ef
gnu: retroarch: Don't use %OUTPUT. 
* gnu/packages/games.scm (retroarch)[arguments]: Accept an OUTPUTS key
in the configure phase.  Add a comment about the script.  Use LET*.
 2017-03-29 22:06:01 +02:00
Tobias Geerinckx-Rice 3f12714742
gnu: games: Use ‘modify-phases’. 
* gnu/packages/games.scm (pingus, cmatrix, freedink-data, xboing, irrlicht,
glkterm, glulx, retroarch)[arguments]: Use ‘modify-phases’ syntax.
 2017-03-29 22:06:00 +02:00
Tobias Geerinckx-Rice 92bdf77790
gnu: glulxe: Fix typo. 
* gnu/packages/games.scm (glulxe)[description]: Fix typo.
 2017-03-29 22:06:00 +02:00
Tobias Geerinckx-Rice dbe7095b46
gnu: glkterm: Use @code in description. 
* gnu/packages/games.scm (glkterm)[description]: Use @code.
 2017-03-29 22:06:00 +02:00
Tobias Geerinckx-Rice ddce090306
gnu: games: Use INSTALL-FILE. 
* gnu/packages/games.scm (glkterm, glulxe): Use INSTALL-FILE, return #t
instead of an undefined value, and prefer using let bindings.
 2017-03-29 22:05:59 +02:00
Tobias Geerinckx-Rice dbaca6b507
gnu: zstd: Update to 1.1.4. 
* gnu/packages/compression.scm (zstd): Update to 1.1.4.
 2017-03-29 22:05:59 +02:00
Tobias Geerinckx-Rice a53a6b6fef
gnu: hyperrogue: Improve description. 
* gnu/packages/games.scm (hyperrogue)[description]: Mainly fix a typo.
Throw in a few tweaks as well.
 2017-03-29 22:05:59 +02:00
Tobias Geerinckx-Rice 8d5fe1f1cf
gnu: Add httpfs2. 
* gnu/packages/file-systems.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-03-29 22:05:59 +02:00
Leo Famulari 8615da9051
gnu: beets: Don't build with python-enum34. 
This package is unnecessary when using Python > 3.3.

* gnu/packages/music.scm (beets)[inputs]: Remove python-enum34.
 2017-03-29 14:57:24 -04:00
Leo Famulari 7086540de6
gnu: elfutils: Update to 0.168 [fixes CVE-2016-{10254,10255}]. 
* gnu/packages/elf.scm (elfutils): Update to 0.168.
[source]: Update URL.
[home-page]: Update URL.
 2017-03-29 14:37:49 -04:00
Leo Famulari 4caad35dbe
gnu: imagemagick: Update to 6.9.8-3. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-3.
 2017-03-29 14:37:45 -04:00
Marius Bakke c7f7a5bac2
gnu: kakoune: Fix build after Boost ABI change. 
Also remove now-obsolete snippet and inputs.

* gnu/packages/text-editors.scm (kakoune)[source]: Remove gzip substitution.
[arguments]: Drop CPPFLAGS from #:make-flags.
[native-inputs]: Remove GCC-5.
[inputs]: Remove gcc:lib.
 2017-03-29 14:23:56 +02:00
Ludovic Courtès a4cdcffb19
gnu: lxsession: Build Vala code from source. 
* gnu/packages/lxde.scm (lxsession)[source](snippet): New field.
 2017-03-29 13:18:37 +02:00
Kei Kebreau f8279ba46b
gnu: hyperrogue: Update to 9.4c. 
* gnu/packages/games.scm (hyperrogue): Update to 9.4c.
[source]: Remove snippet.
[arguments]: Remove #:make-flags; adjust configure and install phases; add
install-data phase.
[native-inputs]: Add hyperrogue-data and unzip.
[license]: Add cc-by-sa4.0 and cc0 licenses for sounds.
 2017-03-28 23:38:23 -04:00
Leo Famulari 7bde7273c3
gnu: libressl: Update to 2.5.2. 
* gnu/packages/tls.scm (libressl): Update to 2.5.2.
 2017-03-28 22:05:55 -04:00
Vasile Dumitrascu b125649a59
gnu: emacs-monroe: Don't use MELPA archive. 
* gnu/packages/emacs.scm (emacs-monroe)[version]: Change to 0.3.1.
[source]: Use github instead of melpa. Add (file-name).
[home-page]: Use HTTPS.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-29 03:05:40 +02:00
Marius Bakke 3ee9355e2f
gnu: python-pexpect: Add verbose test output. 
Fixes <https://bugs.gnu.org/26286>.

* gnu/packages/python.scm (python-pexpect, python2-pexpect)[arguments]: Add
"-v" to "nosetests" command.
 2017-03-29 02:31:59 +02:00
ng0 812c1819a0
gnu: Add lxde. 
* gnu/packages/lxde.scm (lxde): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:45 +02:00
ng0 50042505db
gnu: Add lxpanel. 
* gnu/packages/lxde.scm (lxpanel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:45 +02:00
ng0 dbf544f9ec
gnu: Add keybinder. 
* gnu/packages/wm.scm (keybinder): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:45 +02:00
ng0 d3897349e9
gnu: Add lxsession. 
* gnu/packages/lxde.scm (lxsession): New variable.
* gnu/packages/patches/lxsession-use-gapplication.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:45 +02:00
ng0 f3b3af37d4
gnu: Add lxinput. 
* gnu/packages/lxde.scm (lxinput): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:45 +02:00
ng0 169274d5c5
gnu: Add lxde-common. 
* gnu/packages/lxde.scm (lxde-common): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:45 +02:00
ng0 4dcbed572c
gnu: Add lxde-icon-theme. 
* gnu/packages/lxde.scm (lxde-icon-theme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:44 +02:00
ng0 7f7d52cc9a
gnu: Add lxmenu-data. 
* gnu/packages/lxde.scm (lxmenu-data): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:44 +02:00
Kyle Meyer 6bd4a88989
gnu: emacs-elfeed: Update to 2.1.0. 
* gnu/packages/emacs.scm (emacs-elfeed): Update to 2.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-28 22:15:44 +02:00
Ludovic Courtès e1f02f92e9
Replace (compose not PROC) with simpler idioms. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments] <check>:
Use (negate proc) instead of (compose not proc).
* guix/import/cran.scm (recursive-import): Likewise.
* guix/import/elpa.scm (filter-dependencies): Use 'remove' instead of
'(filter (compose not proc) ...)'.
 2017-03-28 22:15:44 +02:00
Leo Famulari 23b9168dcd
gnu: python-pytest-2.9.2: Replace with python-pytest-3.0. 
* gnu/packages/python.scm (python-pytest-2.9.2): Replace with ...
(python-pytest-3.0): ... new variable.
(python2-pytest-3.0): New variable.
(python-cryptography, python2-cryptography, python-sphinx-1.5.3)[native-inputs]:
Replace python-pytest-2.9.2 with python-pytest-3.0.
* gnu/packages/backup.scm (borg)[native-inputs]: Likewise.
gnu/packages/calendar.scm (khal)[native-inputs]: Likewise.
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki eec21d4be7
gnu: Add python-mando 
* gnu/packages/python.scm (python-mando, python2-mando): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki 5d0c3ba856
gnu: Add python-paramunittest 
* gnu/packages/python.scm (python-paramunittest, python2-paramunittest): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki 3061b33190
gnu: Add python-sphinx@1.5.3. 
* gnu/packages/python.scm (python-sphinx-1.5.3): New variable.
 2017-03-28 15:59:22 -04:00
Muriithi Frederick Muriuki 7f71e2579a
gnu: Add python-pytest@3.0.7 
* gnu/packages/python.scm (python-pytest-3.0.7): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:59:18 -04:00
Leo Famulari a652eb9331
gnu: shroud: Use HTTPS source URL. 
* gnu/packages/password-utils.scm (shroud)[source]: Use HTTPS URL.
 2017-03-28 15:23:07 -04:00
Arun Isaac 59d915ac37
gnu: shroud: Fix home page URL. 
* gnu/packages/password-utils.scm (shroud)[home-page]: Update URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-28 15:23:03 -04:00
Marius Bakke 2e93ee5f1b
gnu: rocksdb: Update to 5.2.1. 
* gnu/packages/databases.scm (rocksdb): Update to 5.2.1.
 2017-03-28 17:02:04 +02:00
Marius Bakke f8f44dd738
gnu: Add rdma-core. 
* gnu/packages/linux.scm (rdma-core): New variable.
 2017-03-28 17:02:03 +02:00
Marius Bakke b3ed50e6ad
gnu: Add multipath-tools. 
* gnu/packages/linux.scm (multipath-tools): New variable.
 2017-03-28 16:40:55 +02:00
Marius Bakke aadead6f17
gnu: fio: Enable rbd support. 
* gnu/packages/benchmark.scm (fio)[inputs]: Add ceph:lib.
 2017-03-28 16:38:17 +02:00
Marius Bakke dcfe44cbce
gnu: Add ceph. 
* gnu/packages/storage.scm,
  gnu/packages/patches/ceph-disable-cpu-optimizations.patch,
  gnu/packages/patches/ceph-skip-collect-sys-info-test.patch,
  gnu/packages/patches/ceph-skip-unittest_blockdev.patch: New files.
* gnu/local.mk (GNU_SYSTEM_MODULES, dist_patch_DATA): Register it.
 2017-03-28 16:35:37 +02:00
Marius Bakke 22ea02351f
gnu: xmlstarlet: Disable failing tests. 
* gnu/packages/xml.scm (xmlstarlet)[arguments]: Add phase to disable two tests.
 2017-03-28 15:54:27 +02:00
Marius Bakke ad31b4febf
Revert "gnu: snappy: Update to 1.1.4." 
Rocksdb fails to build with this version:
https://github.com/facebook/rocksdb/issues/1947

This reverts commit 9baab9aeed.
 2017-03-28 15:54:11 +02:00
Marius Bakke f125ec8ef2
gnu: fio: Install python scripts in separate output. 
* gnu/packages/benchmark.scm (fio)[outputs]: New field.
[arguments]: Rename 'wrap-python-scripts' phase to 'move-outputs'. Keep wrapper.
 2017-03-28 15:51:28 +02:00
Mark H Weaver 9909b8b952
gnu: linux-libre: Update to 4.10.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.6.
(%linux-libre-hash): Update hash.
 2017-03-28 05:37:42 -04:00
Mark H Weaver cd5ba39588
gnu: linux-libre@4.9: Update to 4.9.18. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.18.
 2017-03-28 05:37:08 -04:00
Mark H Weaver 8ba0bd1c6c
gnu: linux-libre@4.4: Update to 4.4.57. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.57.
 2017-03-28 05:36:20 -04:00
Efraim Flashner 04952bd732
gnu: nspr: Use 'modify-phases' syntax. 
* gnu/packages/gnuzilla.scm (nspr)[arguments]: Use 'modify-phases'
syntax.
 2017-03-28 09:38:27 +03:00
Efraim Flashner 84fb4bd907
gnu: nspr: Update to 4.14. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.14.
 2017-03-28 09:38:14 +03:00
Efraim Flashner aaac423cc4
gnu: mozjs@24: Use more inherited fields. 
* gnu/packages/gnuzilla.scm (mozjs@24)[arguments]: Use
'substitute-keyword-arguments', override inherited 'configure.
[native-inputs]: Remove field to use inherited native-inputs.
[propagated-inputs]: Same.
 2017-03-28 09:35:29 +03:00
Efraim Flashner 56486b3a40
gnu: mozjs@17: Use 'modify-phases' syntax. 
* gnu/packages/gnuzilla.scm (mozjs@17)[arguments]: Use 'modify-phases'
syntax.
 2017-03-28 09:35:24 +03:00
Efraim Flashner f403c6761b
gnu: mozjs@17: Add missing inputs. 
* gnu/packages/gnuzilla.scm (mozjs@17)[native-inputs]: Add pkg-config.
[propagated-inputs]: Add nspr.
[inputs]: Add zlib.
 2017-03-28 09:34:58 +03:00
Efraim Flashner a64b7da513
gnu: mozjs@17: Add support for aarch64-linux. 
* gnu/packages/gnuzilla.scm (mozjs@17)[source]: Add patch.
[arguments]: Add phase deleting slow test, add configure argument for
building on aarch64-linux.
* gnu/packages/patches/mozjs17-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-28 09:34:53 +03:00
Efraim Flashner 26f38d313b
gnu: mozjs@24: Add aarch64-support. 
* gnu/packages/gnuzilla.scm (mozjs@24)[source]: Add patch.
[arguments]: Add flag for building on aarch64-linux, delete failing test.
* gnu/packages/patches/mozjs24-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-28 09:34:44 +03:00
Efraim Flashner b4f67b7ebb
gnu: mysql: Disable tests on aarch64-linux. 
* gnu/packages/databases.scm (mysql)[arguments]: Disable the test suite
on aarch64-linux.
 2017-03-28 09:34:38 +03:00
Efraim Flashner 6f76606984
gnu: gsl: Disable tests on aarch64-linux. 
* gnu/packages/maths.scm (gsl)[arguments]: Do not run the test suite on
aarch64-linux.
[home-page]: Use https.
 2017-03-28 09:34:33 +03:00
Leo Famulari c17383f400
Merge branch 'master' into core-updates 2017-03-27 21:19:38 -04:00
Leo Famulari 7aeb4ffa58
gnu: epiphany: Update to 3.22.7. 
* gnu/packages/gnome.scm (epiphany): Update to 3.22.7.
 2017-03-27 20:20:50 -04:00
Leo Famulari c386855249
gnu: webkitgtk: Update to 2.16.0. 
WebKitGTK+ 2.16.0 is the first stable release of WebKitGTK+ that uses libgcrypt
instead of GnuTLS for some cryptographic functions:

<https://bugs.webkit.org/show_bug.cgi?id=163125>
<http://trac.webkit.org/changeset/208297/webkit>

* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.0.
[inputs]: Replace gnutls with libgcrypt.
 2017-03-27 20:20:47 -04:00
Tobias Geerinckx-Rice 7432d3ae18
gnu: grafx2: Remove zero-width space. 
* gnu/packages/game-development.scm (grafx2)[description]: Remove
invisible <U+200B> (‘zero-width space’) character.
 2017-03-28 01:22:18 +02:00
Ludovic Courtès a48a1071a6
gnu: libgit2: Patch use-after-free. 
* gnu/packages/patches/libgit2-use-after-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (libgit2)[inputs]: Add it.
[arguments] <#:phases>: Add 'apply-patch' phase.
 2017-03-28 00:32:37 +02:00
Leo Famulari bc4a2b853c
gnu: lm-sensors: Use a descriptive file name for the source tarball. 
* gnu/packages/linux.scm (lm-sensors)[source]: Add file-name field.
 2017-03-27 14:32:29 -04:00
Tobias Geerinckx-Rice bd9b8d89ad
gnu: mcelog: Update to 149. 
* gnu/packages/linux.scm (mcelog): Update to 149.
 2017-03-27 20:20:06 +02:00
Tobias Geerinckx-Rice 81d95a121a
gnu: corkscrew: Install the README file. 
* gnu/packages/ssh.scm (corkscrew)[arguments]: Add a very basic
‘install-documentation’ phase.
 2017-03-27 20:20:05 +02:00
David Thompson 1e4063010d
gnu: haunt: Disable test suite. 
* gnu/packages/guile.scm (haunt): Disable test suite.
 2017-03-27 14:18:17 -04:00
Thomas Danckaert b1a8fd2d2c
gnu: libreoffice: Update to 5.3.1.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.1.2.
[inputs]: Add libstaroffice and libzmf.
[arguments]: Remove reference to removed patch; unpack xmlsec 1.2.23 tarball.
(xmlsec-src-libreoffice): Update to version 1.2.23 tarball.
 2017-03-27 20:17:02 +02:00
Thomas Danckaert 90ac806d3a
gnu: orcus: Update to 0.12.1. 
* gnu/packages/libreoffice.scm (orcus): Update to 0.12.1.
[inputs]: Add python.
 2017-03-27 20:16:47 +02:00
Thomas Danckaert b85b56dd7b
gnu: libetonyek: Update to 0.1.6. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.6.
[arguments]: Add phase 'autoreconf, because configure.ac is patched.  Add
configure flag "--with-mdds=1.2".
[inputs]: Add liblangtag.
[native-inputs]: Add autoconf and automake.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-27 20:16:32 +02:00
Thomas Danckaert 22e52dbd06
gnu: Add libstaroffice. 
* gnu/packages/libreoffice.scm (libstaroffice): New variable.
 2017-03-27 20:16:19 +02:00
David Thompson 68c6110c20
gnu: Add grafx2. 
* gnu/packages/game-development.scm (grafx2): New variable.
 2017-03-27 14:16:02 -04:00
Thomas Danckaert cb38643924
gnu: ixion: Update to 0.12.2. 
* gnu/packages/libreoffice.scm (ixion): Update to 0.12.2.
[inputs]: Replace python-2 by python.
 2017-03-27 20:15:51 +02:00
Thomas Danckaert 57144094b8
gnu: mdds: Upgrade to 1.2.2. 
* gnu/packages/boost.scm (mdds): Upgrade to 1.2.2.
 2017-03-27 20:15:36 +02:00
Thomas Danckaert 741916f114
gnu: Add libzmf. 
* gnu/packages/libreoffice.scm (libzmf): New Variable.
 2017-03-27 20:15:04 +02:00
Leo Famulari ccfac09c82
gnu: geoclue: Update to 2.4.6. 
* gnu/packages/gnome.scm (geoclue): Update to 2.4.6.
 2017-03-27 11:57:42 -04:00
Tobias Geerinckx-Rice 10c95711b4
gnu: corkscrew: Improve descriptions. 
* gnu/packages/ssh.scm (corkscrew)[synopsis, description]: Fix typos and
condense.  Remove scary warning (the tunnel is always encrypted through
SSH) and speculation.
 2017-03-27 17:42:52 +02:00
Tobias Geerinckx-Rice 040ae44aa1
gnu: corkscrew: Download source from a mirror. 
* gnu/packages/ssh.scm (corkscrew)[source]: Use
‘https://downloads.openwrt.org’.
 2017-03-27 17:42:51 +02:00
Tobias Geerinckx-Rice a800c2175f
gnu: mosh: Update to 1.3.0. 
* gnu/packages/ssh.scm (mosh): Update to 1.3.0.
 2017-03-27 17:42:51 +02:00
Tobias Geerinckx-Rice f051d83c32
gnu: youtube-dl: Update to 2017.03.26. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.26.
 2017-03-27 17:42:51 +02:00
Danny Milosavljevic 6e64766a86
gnu: gnuplot: Enable tikz backend. 
* gnu/packages/maths.scm (gnuplot)[inputs]: Add lua.
 2017-03-27 15:58:50 +02:00
Alex Kost 689db38e34
ui: Support Texinfo markup in package synopses. 
* guix/ui.scm (package-field-string): New procedure.
(package-description-string): Use it.
(package-synopsis-string): New procedure.
(package->recutils): Use it.
* guix/scripts/lint.scm (check-synopsis-style)[check-texinfo-markup]:
New procedure.  Use it in checks.
* tests/lint.scm: Test it.
* gnu/packages/perl.scm (perl-try-tiny)[synopsis]: Adjust for the
Texinfo markup.
 2017-03-27 10:55:16 +03:00
Marius Bakke b5a1359d44
gnu: mumble: Fix build after speex update. 
* gnu/packages/telephony.scm (mumble)[inputs]: Add SPEEXDSP.
 2017-03-26 23:47:38 +02:00
Marius Bakke 01229cbe16
gnu: Add speexdsp. 
* gnu/packages/xiph.scm (speexdsp): New variable. Export it.
 2017-03-26 23:47:37 +02:00
Leo Famulari 5d073bdb05
Revert "gnu: audacity: Use gtk+@3." 
It appears that Audacity does not yet support GTK+-3 fully; the user interface
was unusable with this change.

This reverts commit 36e17ab417.
 2017-03-26 16:26:29 -04:00
Tobias Geerinckx-Rice 20413597b6
gnu: claws-mail: Update to 3.15.0. 
* gnu/packages/mail.scm (claws-mail): Update to 3.15.0.
 2017-03-26 16:59:44 +02:00
Vasile Dumitrascu a1eba1bec1
gnu: Add emacs-monroe. 
* gnu/packages/emacs.scm (emacs-monroe): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-26 16:00:18 +02:00
Vasile Dumitrascu 7f7b38af9e
gnu: Add emacs-keyfreq. 
* gnu/packages/emacs.scm (emacs-keyfreq): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-26 15:56:19 +02:00
Alex Sassmannshausen 7398d96ee9
gnu: perl-scalar-list-utils: Update to 1.47. 
* gnu/packages/perl.scm (perl-scalar-list-utils): Update to 1.47.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen 78bf9e01c0
gnu: perl-parse-cpan-meta: Update to 2.150010. 
* gnu/packages/perl.scm (perl-parse-cpan-meta): Update to 2.150010.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen f3312bc191
gnu: perl-cpan-meta-yaml: Update to 0.018. 
* gnu/packages/perl.scm (perl-cpan-meta-yaml): Update to 0.018.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen 2dfd0d7b9c
gnu: perl-cpan-meta-requirements: Update to 2.140. 
* gnu/packages/perl.scm (perl-cpan-meta-requirements): Update to 2.140.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen 687d2c4fe2
gnu: perl-yaml: Update to 1.23. 
* gnu/packages/perl.scm (perl-yaml): Update to 1.23.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen 7b34de5f84
gnu: perl-variable-magic: Update to 0.61. 
* gnu/packages/perl.scm (perl-variable-magic): Update to 0.61.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen 9b882dcc0c
gnu: perl-time-duration-parse: Update to 0.13. 
* gnu/packages/perl.scm (perl-time-duration-parse): Update to 0.13.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen cbe50be4c9
gnu: perl-test-warnings: Update to 0.026. 
* gnu/packages/perl.scm (perl-test-warnings): Update to 0.026.
 2017-03-26 11:33:37 +02:00
Alex Sassmannshausen 3cb9d58ad6
gnu: perl-test-simple: Update to 1.302078. 
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302078.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen ffdbbcc812
gnu: perl-test-exception: Update to 0.43. 
* gnu/packages/perl.scm (perl-test-exception): Update to 0.43.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen 0ac43aaa69
gnu: perl-test-cleannamespaces: Update to 0.22. 
* gnu/packages/perl.scm (perl-test-cleannamespaces): Update to 0.22.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen be7e54325e
gnu: perl-sub-name: Update to 0.21. 
* gnu/packages/perl.scm (perl-sub-name): Update to 0.21.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen 84c73b7f45
gnu: perl-params-validate: Update to 1.26. 
* gnu/packages/perl.scm (perl-params-validate): Update to 1.26.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen 3857a3fc2a
gnu: perl-package-deprecationmanager: Update to 0.17. 
* gnu/packages/perl.scm (perl-package-deprecationmanager): Update to 0.17.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen 0d01f517d0
gnu: perl-moose: Update to 2.2004. 
* gnu/packages/perl.scm (perl-moose): Update to 2.2004.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen c4fcf35420
gnu: perl-module-runtime-conflicts: Update to 0.003. 
* gnu/packages/perl.scm (perl-module-runtime-conflicts): Update to 0.003.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen 0c61441a7f
gnu: perl-devel-partialdump: Update to 0.18. 
* gnu/packages/perl.scm (perl-devel-partialdump): Update to 0.18.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen 2d31b7f19b
gnu: perl-devel-overloadinfo: Update to 0.004. 
* gnu/packages/perl.scm (perl-devel-overloadinfo): Update to 0.004.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen be2b42a7f6
gnu: perl-cpan-meta-check: Update to 0.011. 
* gnu/packages/perl.scm (perl-cpan-meta-check): Update to 0.011.
 2017-03-26 11:33:36 +02:00
Alex Sassmannshausen a00afca443
gnu: perl-common-sense: Update to 3.74. 
* gnu/packages/perl.scm (perl-common-sense): Update to 3.74.
 2017-03-26 11:33:35 +02:00
Alex Sassmannshausen a941be6a3c
gnu: perl-clone: Update to 0.38. 
* gnu/packages/perl.scm (perl-clone): Update to 0.38.
 2017-03-26 11:33:35 +02:00
Alex Sassmannshausen fb89fc0cde
gnu: perl-class-load: Update to 0.23. 
* gnu/packages/perl.scm (perl-class-load): Update to 0.23.
 2017-03-26 11:33:35 +02:00
Alex Sassmannshausen 4c08a8a67a
gnu: perl-capture-tiny: Update to 0.46. 
* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.46.
 2017-03-26 11:33:35 +02:00
Alex Sassmannshausen ee6d716234
gnu: perl-b-hooks-endofscope: Update to 0.21. 
* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.21.
 2017-03-26 11:33:35 +02:00
Alex Sassmannshausen 033dec64cc
gnu: Add perl-test-needs. 
* gnu/packages/perl.scm (perl-test-needs): New variable.
 2017-03-26 11:33:35 +02:00
Alex Sassmannshausen 21b7cf4287
gnu: Add perl-file-pushd. 
* gnu/packages/perl.scm (perl-file-pushd): New variable
 2017-03-26 11:33:35 +02:00
Efraim Flashner 6ff5e9baea
gnu: denemo: Update to 2.1. 
* gnu/packages/music.scm (denemo): Update to 2.1.
 2017-03-26 12:13:27 +03:00
Marius Bakke 727bec13a3
gnu: po4a: Make manpages writable before resetting timestamps. 
* gnu/packages/gettext.scm (po4a)[arguments]: Add
'make-compressed-files-writable' phase.
 2017-03-26 11:06:46 +02:00
Julien Lepiller 23bd8f556e
gnu: bigloo: Fix build failure in ld. 
* gnu/packages/scheme.scm (bigloo)[arguments]<#:configure-flags>: Add --cflags=-fPIC.
 2017-03-26 10:42:51 +02:00
Marius Bakke b1554326bb
gnu: libsvgtiny: Build with gperf@3.0. 
* gnu/packages/web.scm (libsvgtiny)[native-inputs]: Change GPERF to GPERF-3.0.
 2017-03-26 09:36:00 +02:00
Marius Bakke 5ac097e28c
gnu: libpqxx: Fix build with newer sed. 
* gnu/packages/databases.scm (libpqxx)[arguments]: Add 'fix-sed-command' phase
that corrects a typo in the configure script.
 2017-03-26 09:16:04 +02:00
Efraim Flashner 82654d956f
gnu: aseprite: Downgrade to 1.1.7. 
* gnu/packages/game-development.scm (aseprite): Downgrade to 1.1.7.
 2017-03-26 10:14:04 +03:00
Mark H Weaver 81e752d92e
gnu: linux-libre: Update to 4.10.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.5.
(%linux-libre-hash): Update hash.
 2017-03-26 03:12:33 -04:00
Mark H Weaver bd0423262a
gnu: linux-libre@4.9: Update to 4.9.17. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.17.
 2017-03-26 03:10:25 -04:00
Mark H Weaver 3c67367612
gnu: linux-libre@4.4: Update to 4.4.56. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.56.
 2017-03-26 03:09:06 -04:00
Marius Bakke 14d0db40ff
gnu: vte-ng: Build with gperf@3.0. 
* gnu/packages/gnome.scm (vte-ng)[native-inputs]: Change GPERF to GPERF-3.0.
 2017-03-26 08:29:19 +02:00
Marius Bakke 3c5698046a
gnu: libtorrent-rasterbar: Update to 1.1.2. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.2.
[source]: Use patch.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-26 07:49:50 +02:00
Marius Bakke ff4dc16eac
gnu: aseprite: Update to 1.1.13. 
* gnu/packages/game-development.scm (aseprite): Update to 1.1.13.
[source]: Switch to release archive.
 2017-03-26 07:09:12 +02:00
Ludovic Courtès d1e3f59c9b
gnu: coreutils: Patch 'cut' unit test on ARM. 
Fixes <https://bugs.gnu.org/26253>.

* gnu/packages/patches/coreutils-cut-huge-range-test.patch: New file.
* gnu/packages/base.scm (coreutils)[native-inputs]: Add it as an input.
[arguments] <#:phases>: On ARM, add 'patch-cut-test' phase.
* gnu/local.mk (dist_patch_DATA): Add 'coreutils-cut-huge-range-test.patch'.
 2017-03-25 23:31:10 +01:00
Efraim Flashner c5be3467f2
gnu: python2-dogtail: Update to 0.9.9. 
* gnu/packages/python.scm (python2-dogtail): Update to 0.9.9.
[source]: Download using pypi-uri scheme.
 2017-03-25 23:53:03 +03:00
Efraim Flashner ac7a8f1ff8
gnu: xorg-server-xwayland: Add missing input. 
* gnu/packages/xorg.scm (xorg-server-xwayland)[inputs]: Remove libepoxy,
add wayland-protocols.
 2017-03-25 23:19:17 +03:00
Marius Bakke 17fc8da3dd
gnu: git: Update to 2.12.2. 
* gnu/packages/version-control.scm (git): Update to 2.12.2.
 2017-03-25 20:17:04 +01:00
Marius Bakke 5e53557ed0
gnu: maim: Update to 4.4.62. 
* gnu/packages/xdisorg.scm (maim): Update to 4.4.62.
 2017-03-25 20:12:44 +01:00
Tobias Geerinckx-Rice 90ff097995
gnu: youtube-dl: Update to 2017.03.24. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.24.
 2017-03-25 19:40:10 +01:00
Efraim Flashner 6a052473aa
gnu: pcc: Remove aarch64-linux from %supported-systems. 
* gnu/packages/c.scm (pcc)[supported-systems]: New field.
 2017-03-25 21:30:25 +03:00
Efraim Flashner 97b7201f99
gnu: tcc: Remove aarch64-linux from %supported-systems. 
* gnu/packages/c.scm (tcc)[supported-systems]: Remove aarch64-linux from
the %supported-systems.
 2017-03-25 21:24:18 +03:00
Danny Milosavljevic 7e58cbbb39
gnu: Add shellcheck. 
* gnu/packages/haskell.scm (shellcheck): New variable.
 2017-03-25 15:02:11 +01:00
Danny Milosavljevic 6f8016f4d8
gnu: Add ghc-json. 
* gnu/packages/haskell.scm (ghc-json): New variable.
 2017-03-25 15:00:18 +01:00
Vasile Dumitrascu 070e1fe99a
gnu: Add emacs-symon. 
* gnu/packages/emacs.scm (emacs-symon): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-24 17:24:26 -04:00
Mathieu Othacehe 32e75b4808
gnu: tlp: Read configuration from /etc/tlp. 
* gnu/packages/linux.scm (tlp): Set TLP_CONF to "/etc/tlp".

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2017-03-24 16:09:16 +01:00
Vasile Dumitrascu 4d3d3bd217
gnu: Add emacs-aggresive-indent-mode. 
* gnu/packages/emacs.scm (emacs-aggressive-indent): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-03-24 14:19:00 +01:00
Efraim Flashner 3d39ab456d
gnu: ccache: Update to 3.3.4. 
* gnu/packages/ccache.scm (ccache): Update to 3.3.4.
 2017-03-24 14:53:21 +03:00
Efraim Flashner 2e200ee8c0
gnu: talloc: Update to 2.1.9. 
* gnu/packages/samba (talloc): Update to 2.1.9.
[home-page]: Use https.
 2017-03-24 14:16:09 +03:00
Efraim Flashner c8c1470451
gnu: samba: Update to 4.5.7 [fixes CVE-2017-2619]. 
* gnu/packages/samba.scm (samba): Update to 4.5.7.
 2017-03-24 14:14:52 +03:00
Marius Bakke 77ab6983a1
gnu: devil: Update to 1.8.0. 
* gnu/packages/patches/devil-CVE-2009-3994.patch,
gnu/packages/patches/devil-fix-libpng.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (devil): Update to 1.8.0.
[source]: Remove patches and snippet.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Disable tests. Remove #:configure-flags and add a
'change-directory' phase. Remove 'fix-tests' phase.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
 2017-03-24 00:12:00 +01:00
Marius Bakke 183303b3ef
gnu: nginx: Update to 1.11.11. 
* gnu/packages/web.scm (nginx): Update to 1.11.11.
 2017-03-23 20:00:06 +01:00
Danny Milosavljevic 42c127e876
gnu: rustc: Simplify configure phase. 
* gnu/packages/rust.scm (rustc): Simplify configure phase.
 2017-03-23 19:36:10 +01:00
rennes 7fdca77e00
gnu: ustr: Fix build with GCC 5. 
* gnu/packages/patches/ustr-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (ustr)[source]: Use patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-23 14:34:09 -04:00
ng0 120349bfb4
gnu: rxvt-unicode: Give 'urxvtc.desktop' a unique display name. 
* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: In phase
'install-desktop-urxvtc' add '(client)' to the 'Name' line of the
resulting '.desktop' file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-23 19:33:36 +01:00
Sergei Trofimovich 096f008014
gnu: rcs: Fix build against gcc-5.4.0. 
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/patches/rcs-5.9.4-noreturn.patch: New file.
* gnu/packages/version-control.scm (rcs)[source]: Applied patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-23 19:26:27 +01:00
Tobias Geerinckx-Rice 359ea6ba29
gnu: knot: Update to 2.4.2. 
* gnu/packages/dns.scm (knot): Update to 2.4.2.
 2017-03-23 18:18:53 +01:00
Leo Famulari 26b16fd9ca
gnu: python-appdirs: Use pypi-uri. 
This is a followup to commit 543782e1ff.

* gnu/packages/python.scm (python-appdirs, python2-appdirs)[source]: Use
pypi-uri.
 2017-03-23 12:06:15 -04:00
Ricardo Wurmus ce54f5db7d
gnu: gfortran-5: Move definition before "gfortran". 
This is a follow-up to commit cb4805e34c.

* gnu/packages/gcc.scm (gfortran-5): Move definition.
 2017-03-23 16:34:17 +01:00
Ricardo Wurmus cb4805e34c
gnu: gfortran: Change default version to gfortran-5. 
* gnu/packages/gcc.scm (gfortran): Point to gfortran-5.
 2017-03-23 15:37:24 +01:00
Efraim Flashner 0371b345e8
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-23 14:53:33 +02:00
Efraim Flashner 8be563a5a3
gnu: dtc: Build with flex-2.6.1. 
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Use flex-2.6.1 and
not flex.
 2017-03-23 14:40:40 +02:00
Peter Mikkelsen c53af0016e
gnu: idris: Update to 0.99.1. 
* gnu/packages/idris.scm (idris): Update to 0.99.1.
[inputs]: Add ghc-code-page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-23 12:59:03 +01:00
Peter Mikkelsen df7309fc6e
gnu: Add ghc-code-page. 
* gnu/packages/haskell.scm (ghc-code-page): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-23 12:59:03 +01:00
Ricardo Wurmus 939b6b113b
gnu: star: Update to 2.5.3a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.3a.
 2017-03-23 11:21:08 +01:00
Efraim Flashner d5ceeb5a2d
gnu: scotch: Build with flex-2.6.1. 
* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not
flex.
 2017-03-23 07:32:31 +02:00
Efraim Flashner 5302eba611
gnu: libffcall: Remove aarch64-linux from supported systems. 
* gnu/packages/libffcall.scm (libffcall)[supported-systems]: New field,
remove aarch64-linux.
[home-page]: Use https.
 2017-03-23 07:32:26 +02:00
Tobias Geerinckx-Rice b27bd0b057
gnu: youtube-dl: Update to 2017.03.22. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.22.
 2017-03-23 02:53:18 +01:00
Tobias Geerinckx-Rice a06cd95ab0
gnu: python-natsort: Update to 5.0.2. 
* gnu/packages/python.scm (python-natsort): Update to 5.0.2.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice e17a12482b
gnu: python2-futures: Update to 3.0.5. 
* gnu/packages/python.scm (python2-futures): Update to 3.0.5.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 06fe79f263
gnu: python-rauth: Update to 0.7.3. 
* gnu/packages/python.scm (python-rauth): Update to 0.7.3.
 2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 36e0d9db90
gnu: python-ipaddress: Update to 1.0.18. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.18.
 2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 543782e1ff
gnu: python-appdirs: Update to 1.4.3. 
* gnu/packages/python.scm (python-appdirs): Update to 1.4.3.
 2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 80e8d8517a
gnu: python-beautifulsoup4: Update to 4.5.3. 
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.5.3.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 7c4279322e
gnu: python-drmaa: Update to 0.7.7. 
* gnu/packages/python.scm (python-drmaa): Update to 0.7.7.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice fd2662e950
gnu: python-sqlalchemy-utils: Update to 0.32.13. 
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.13.
 2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 745d85b7db
gnu: python-pafy: Update to 0.5.3.1. 
* gnu/packages/python.scm (python-pafy): Update to 0.5.3.1.
 2017-03-23 02:53:14 +01:00
Leo Famulari e20dafd0a1
gnu: gpsbabel: Fix a build failure with GCC 5. 
* gnu/packages/gps.scm (gpsbabel)[arguments]: Add -fPIC to #:configure-flags.
 2017-03-22 17:04:46 -04:00
Efraim Flashner 283f04b053
gnu: libffcall: Set source file-name. 
* gnu/packages/libffcall.scm (libffcall)[source]: Add file-name field.
[home-page]: Use https.
 2017-03-22 22:36:43 +02:00
Kei Kebreau 359e9c4215
gnu: chicken: Update to 4.12.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.12.0.
 2017-03-22 15:31:17 -04:00
Efraim Flashner 44cba47e93
gnu: wine: Build with flex-2.6.1. 
* gnu/packages/wine.scm (wine)[native-inputs]: Use flex-2.6.1 and not
flex.
 2017-03-22 21:06:46 +02:00
Efraim Flashner 575a6f0f8a
gnu: binutils-vc4: Build with flex-2.6.1. 
* gnu/packages/embedded.scm (binutils-vc4)[native-inputs]: Use
flex-2.6.1 and not flex.
 2017-03-22 19:27:00 +02:00
Leo Famulari 112d645ffa
gnu: dovecot: Update to 2.2.28. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.28.
 2017-03-22 13:04:29 -04:00
Danny Milosavljevic 9b7a9580d4
gnu: rustc: Honor max line length. 
* gnu/packages/rust.scm (rustc)[arguments]: patch-tests: Honor max line
length.
 2017-03-22 17:41:44 +01:00
Ludovic Courtès 61a3137bdd
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 73a4645.
 2017-03-22 16:05:46 +01:00
Efraim Flashner 493ae57eca
gnu: binutils-vc4: Set source file-name. 
* gnu/packages/embedded.scm (binutils-vc4)[source]: Add file-name field.
 2017-03-22 16:10:45 +02:00
Ricardo Wurmus dc8a34ed46
gnu: freeimage: Fix build with GCC 5. 
* gnu/packages/patches/freeimage-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
 2017-03-22 14:45:44 +01:00
Efraim Flashner aeb6fe5fa0
gnu: autoconf-archive: Update to 2017.03.21. 
* gnu/packages/autotools.scm (autoconf-archive): Update to 2017.03.21.
 2017-03-22 15:35:59 +02:00
Ludovic Courtès 5cd074ea32
gnu: guile: Add 'guile-next' as a deprecated alias. 
This is a followup to f6396d862f.

* gnu/packages/guile.scm (guile-next): New variable.
 2017-03-22 14:05:58 +01:00
Danny Milosavljevic 326249bab8
gnu: rustc: End resultless phases in #t. 
* gnu/packages/rust.scm (rustc): End resultless phases in #t.
 2017-03-22 12:59:32 +01:00
Ricardo Wurmus 54262c5435
gnu: python-pysam: Run tests in parallel. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
 2017-03-22 12:33:28 +01:00
Ricardo Wurmus 71dbf592c4
gnu: python-pysam: Run tests before installation. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
 2017-03-22 12:33:28 +01:00
Ricardo Wurmus 879b521cd0
gnu: python-pysam: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
 2017-03-22 12:33:24 +01:00
Ricardo Wurmus d553cd6015
gnu: python-pysam: Run tests in parallel. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
 2017-03-22 12:21:39 +01:00
Ricardo Wurmus 611154efc8
gnu: python-pysam: Run tests before installation. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
 2017-03-22 12:21:39 +01:00
Ricardo Wurmus 9488776a18
gnu: python-pysam: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
 2017-03-22 12:21:38 +01:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Efraim Flashner 0e7c3ba1c0
gnu: perl-mojolicious: Update to 7.29. 
* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.29.
 2017-03-22 12:56:23 +02:00
Efraim Flashner c70b50efb9
gnu: perl-io-compress: Update to 2.074. 
* gnu/packages/compression.scm (perl-io-compress): Update to 2.074.
[propagated-inputs]: Update minimum versions to 2.074.
 2017-03-22 12:50:36 +02:00
Efraim Flashner c0b7b797a2
gnu: perl-compress-raw-bzip2: Update to 2.074. 
* gnu/packages/compression.scm (perl-compress-raw-bzip2): Update to 2.074.
 2017-03-22 12:45:55 +02:00
Efraim Flashner 02b067d782
gnu: perl-compress-raw-zlib: Update to 2.074. 
* gnu/packages/compression.scm (perl-compress-raw-zlib): Update to 2.074.
 2017-03-22 12:40:05 +02:00
Leo Famulari d8be338f16
gnu: openssh: Update to 7.5p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.5p1.
 2017-03-22 02:37:31 -04:00
Leo Famulari 22f25392cf
gnu: ntp: Update to 4.2.8p10 [security fixes]. 
Fixes CVE-2016-9042 and CVE-2017-{6451,6452,6455,6458,6459,6460,6462,6463,6464}
and others. See 'NEWS' in the source code for more information.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p10.
 2017-03-22 01:41:41 -04:00
Tobias Geerinckx-Rice 8e71896340
gnu: python-psycopg2: Update to 2.6.2. 
* gnu/packages/python.scm (python-psycopg2): Update to 2.6.2.
 2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice 35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0. 
* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
 2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5. 
* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice 4c4d4df393
gnu: python-texttable: Update to 0.8.7. 
* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d5c183d134
gnu: python-feedgenerator: Update to 1.9. 
* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d25bee2600
gnu: python-wrapt: Update to 1.10.8. 
* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice b9463fdba2
gnu: python-py: Update to 1.4.32. 
* gnu/packages/python.scm (python-py): Update to 1.4.32.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 9e59478f8d
gnu: python-wcwidth: Update to 0.1.7. 
* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
 2017-03-22 02:03:32 +01:00
Tobias Geerinckx-Rice 4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
 2017-03-22 02:03:32 +01:00
Tobias Geerinckx-Rice 2d431b0130
gnu: dns: Return #t instead of something undefined. 
* gnu/packages/dns.scm (yadifa, knot)[arguments]: Return #t after calling
‘substitute*’.
(knot)[source]: Return #t after calling ‘delete-file-recursively’.
 2017-03-22 02:03:31 +01:00
Efraim Flashner 4f7a9e0bff
gnu: vapoursynth: Update to 37. 
* gnu/packages/video.scm (vapoursynth): Update to 37.
 2017-03-21 22:36:33 +02:00
Efraim Flashner 60092c181c
gnu: zimg: Update to 2.5. 
* gnu/packages/image.scm (zimg): Update to 2.5.
 2017-03-21 22:35:32 +02:00
Leo Famulari 049e02eaa2
gnu: libesmtp: Add alternate source URL. 
* gnu/packages/mail.scm (libesmtp)[source]: Add alternate URL.
 2017-03-21 16:33:08 -04:00
Leo Famulari a9681c74ca
gnu: python-pillow: Fix test failures with freetype-2.7. 
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
 2017-03-21 16:20:10 -04:00
Efraim Flashner 83a3464793
gnu: openblas: Add support for aarch64. 
* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as
substitutable, build for target ARMv8.
 2017-03-21 22:03:05 +02:00
Rodger Fox a42619e5e2
gnu: Add lmms. 
* gnu/packages/music.scm (lmms): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-21 15:37:29 -04:00
Arun Isaac 0b608ec4ce
gnu: Add megaglest. 
* gnu/packages/games.scm (megaglest): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-21 15:15:35 -04:00
Arun Isaac fb731c9232
gnu: Add megaglest-data. 
* gnu/packages/games.scm (megaglest-data): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-21 15:15:35 -04:00
Efraim Flashner 8ea71f2005
gnu: ots: Use 'modify-phases' syntax. 
* gnu/packages/ots.scm (ots)[arguments]: Use 'modify-phases' syntax.
 2017-03-21 20:58:52 +02:00
Efraim Flashner b1d3e0a93b
gnu: ots: Add download mirror. 
* gnu/packages/ots.scm (ots)[source]: Add Debian mirror.
 2017-03-21 20:58:51 +02:00
rennes 8e4b7b7514
gnu: xf86-video-vmware: Fix build failure due to missing LLVM. 
* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Add llvm.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-21 14:24:37 -04:00
Leo Famulari 7fc72c7731
gnu: libcmis: Update to 0.5.1. 
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.1.
[source]: Use new source URL. Remove obsolete patch
'libcmis-fix-test-onedrive.patch'.
[home-page]: Update URL.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-21 13:38:13 -04:00
Efraim Flashner a160778cba
gnu: x265: Fix build on aarch64. 
* gnu/packages/video.scm (x265)[arguments]: On aarch64 add a
configure-flag to enable PIC.
 2017-03-21 18:01:05 +02:00
Kei Kebreau 4b0e636701
gnu: Adjust asciidoc-related build options. 
Commits 9099a45792 and
3078821d13 make many package inputs and
build configurations related to asciidoc obsolete.

* gnu/packages/compton.scm (compton)[inputs]: Remove docbook-xml,
libxml2 and libxslt.
* gnu/packages/mail.scm (offlinemap)[native-inputs]: Remove libxslt.
* gnu/packages/linux.scm (btrfs-progs)[native-inputs]: Remove docbook-xml.
(perf)[inputs]: Remove docbook-xml and libxslt.
* gnu/packages/text-editors.scm (kakoune)[native-inputs]: Remove libxslt.
* gnu/packages/version-control.scm (cgit)[native-inputs]: Remove
docbook-xml, docbook-xsl, libxml2 and libxslt.
(cvs-fast-export)[native-inputs]: Remove docbook-xml, docbook-xsl,
libxml2 and libxslt.
* gnu/packages/web.scm (qutebrowser)[native-inputs]: Remove docbook-xml,
docbook-xsl, libxml2, and libxslt.
(tinyproxy)[native-inputs]: Remove docbook-xml, docbook-xsl, libxml2 and
libxslt.
* gnu/packages/wm.scm (awesome)[make-flags]: Remove XML_CATALOG_FILES flag.
(i3-wm)[inputs]: Remove docbook-xml.
[native-inputs]: Add libxml2.
 2017-03-21 11:15:08 -04:00
Arun Isaac ed428a58ec
gnu: Add swaks. 
* gnu/packages/mail.scm (swaks): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-21 15:42:44 +01:00
Marius Bakke 3411937b15
gnu: git: Update to 2.12.1. 
* gnu/packages/version-control.scm (git): Update to 2.12.1.
 2017-03-21 13:45:57 +01:00
humanitiesNerd 6330ece9e3
gnu: Add perl-ole-storage-lite. 
* gnu/packages/perl.scm (perl-ole-storage-lite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-21 12:55:47 +01:00
humanitiesNerd 2b9d2df799
gnu: Add perl-crypt-rc4. 
* gnu/pakages/perl.scm (perl-crypt-rc4): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-21 12:55:43 +01:00
Marius Bakke 4b9a5bd990
gnu: kodi: Wrap executable so it finds libcurl. 
* gnu/packages/kodi.scm (kodi)[arguments]: Add 'wrap' phase.
 2017-03-21 12:37:41 +01:00
Leo Famulari f826c8c7ee
gnu: go@1.4, go@1.7: Skip test that fails with tzdata-2017a. 
* gnu/packages/golang.scm (go-1.4, go-1.7)[arguments]: Disable the test
TestParseInLocation in 'prebuild' phase.
 2017-03-21 01:30:39 -04:00
Marius Bakke 3b4efb1f45
gnu: dtc: Update to 1.4.4. 
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.4.
[source]: Use mirror://kernel.org.
 2017-03-21 01:13:06 +01:00
Marius Bakke d3d92ec2ba
gnu: greenisland: Update to 0.9.0.1. 
* gnu/packages/display-managers.scm (greenisland): Update to 0.9.0.1.
 2017-03-21 01:13:06 +01:00
Marius Bakke 38190ea5ef
gnu: vim: Update to 8.0.0494. 
* gnu/packages/patches/vim-CVE-2017-5953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0494.
[source]: Remove patch.
(vim-full)[arguments]: Add two phases to drop tests and start xorg.
[native-inputs]: Add XORG-SERVER.
 2017-03-20 23:35:39 +01:00
Marius Bakke f69e20341f
gnu: kodi: Update to 18.0_alpha-0-b35147e. 
* gnu/packages/kodi.scm (libdvdnav/kodi, libdvdread/kodi, libdvdcss/kodi): New
variables.
(kodi): Update to 18.0_alpha-0-b35147e.
[source]: Download from git. Unbundle more stuff.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flag to disable nonfree components. Rework phases
to patch bundled software and bootstrap more libraries.
[native-inputs]: Remove CMAKE, DOXYGEN, GAWK and WHICH. Add LIBDVDCSS/KODI,
LIBDVDNAV/KODI and LIBDVDREAD/KODI.
[inputs]: Remove BOOST, BZIP2, ENCA, GPERF, JASPER, LIBMODPLUG, LIBSAMPLERATE,
LIBXMU, LIBXT, MESA-UTILS, SDL2 and UNZIP. Add FMT, GIFLIB, LCMS and LIBDRM.
[license]: Update for remaining software bundles.
 2017-03-20 23:35:39 +01:00
Marius Bakke 0a15ee7b63
gnu: Add fmt. 
* gnu/packages/pretty-print.scm (fmt): New variable.
 2017-03-20 23:35:39 +01:00
Leo Famulari deee8a9dfc
gnu: Remove leftover patch. 
* gnu/packages/patches/openjpeg-use-after-free-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-20 18:25:02 -04:00
Leo Famulari 957699ee92
gnu: openjpeg: Remove obsolete patches. 
* gnu/packages/patches/openjpeg-CVE-2016-5157.patch,
gnu/packages/patches/openjpeg-CVE-2016-7163.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg)[source]: Remove them.
 2017-03-20 18:24:58 -04:00
Julien Lepiller 4140b86bea
gnu: php: Update to 7.1.3. 
* gnu/packages/php.scm (php): Update to 7.1.3.
 2017-03-20 23:09:22 +01:00
Ricardo Wurmus bd0c62315b
gnu: bristol: Fix build failure with alsa-lib 1.1.x. 
* gnu/packages/music.scm (bristol)[arguments]: Add build phase to fix build
failure with alsa-lib 1.1.x.
 2017-03-20 22:44:26 +01:00
Tobias Geerinckx-Rice 6809d9377b
gnu: ngircd: Use HTTPS. 
* gnu/packages/messaging.scm (ngircd)[source, home-page]: Use HTTPS.
 2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 07b7a66526
gnu: ngircd: Use the phrase ‘IRC’ in its description. 
* gnu/packages/messaging.scm (ngircd)[description]: Use ‘IRC’ with @dfn.
 2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 341ed63f47
gnu: ngircd: Use ‘modify-phases’ syntax. 
* gnu/packages/messaging.scm (ngircd)[arguments]: Use ‘modify-phases’.
 2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 4fd95d9170
gnu: ngircd: Update to 24. 
* gnu/packages/messaging.scm (ngircd): Update to 24.
[source]: Remove upstreamed DNS lookup patch.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 500fc65b5b
gnu: znc: Run test suite. 
* gnu/packages/messaging.scm (znc)[arguments]: Enable tests.  Add an
‘unpack-googletest’ phase and add ‘--with-gtest=’ to #:configure-flags.
[native-inputs]: Add googletest source.
 2017-03-20 22:44:05 +01:00
Tobias Geerinckx-Rice f0bce02664
gnu: simple-scan: Update to 3.24.0. 
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.0.
 2017-03-20 22:44:05 +01:00
Ricardo Wurmus e2c4fe7c62
gnu: Add r-cairo. 
* gnu/packages/statistics.scm (r-cairo): New variable.
 2017-03-20 21:16:11 +01:00
Hartmut Goebel 94e24d8124
gnu: Add comments on why setting QT_QPA_PLATFORM for tests. 
* gnu/packages/astronomy.scm (stellarium): Add comment.
* gnu/packages/display-managers.scm (greenisland): dito.
* gnu/packages/kde-frameworks.scm (kguiaddons, kwidgetsaddons,
  kcompletion, baloo, kbookmarks, kconfigwidgtes, kdesignerplugin,
  kemoticons, kglobalaccel, kiconthemes, kio, knewstuff, kparts,
  kpeople, krunner, kservice, ktexteditor, ktextwidgets, kxmlgui,
  plasma-framework): dito.
* gnu/packages/qt.scm (qtsvg): dito.
 2017-03-20 20:56:49 +01:00
Efraim Flashner 4e6509b27f
gnu: mesa: Correct another typo. 
* gnu/packages/gl.scm (mesa)[arguments]: Fix typo (svrast -> swrast).
 2017-03-20 21:44:00 +02:00
Kei Kebreau 0b5d078f8b
gnu: Add freedoom. 
* gnu/packages/games.scm (freedoom): New variable.
 2017-03-20 14:29:44 -04:00
Efraim Flashner 80042ae93d
gnu: wget: Fix test-504 failures. 
* gnu/packages/wget.scm (wget)[source]: Add patch.
* gnu/packages/patches/wget-fix-504-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-20 20:07:56 +02:00
Efraim Flashner 6f9ba4c91c
gnu: Remove wxwidgets@2.8. 
* gnu/packages/wxwidgets.scm (wxwidgets@2.8): Remove variable.
 2017-03-20 18:33:30 +02:00
Efraim Flashner 36e17ab417
gnu: audacity: Use gtk+@3. 
* gnu/packages/audacity.scm (audacity)[inputs]: Remove wxwidgets-gtk2,
gtk+@2, add wxwidgets and gtk+.
 2017-03-20 18:04:01 +02:00
Efraim Flashner 2314474b01
gnu: wxwidgets: Build with webkitgtk. 
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove webkitgtk@2.4,
add webkitgtk.
 2017-03-20 18:02:41 +02:00
Ricardo Wurmus 4f9998c66f
gnu: snakemake: Add runtime dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
 2017-03-20 15:13:19 +01:00
Leo Famulari 0420e89682
gnu: mpd: Update to 0.20.6. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.6.
 2017-03-19 21:55:09 -04:00
Kei Kebreau 1a0c4437ab
gnu: Add deutex. 
gnu/packages/game-development.scm (deutex): New variable.
 2017-03-19 21:43:05 -04:00
Arun Isaac f75b1400ee
gnu: obnam: Enable tests. 
* gnu/packages/backup.scm (obnam)[arguments]: Replace 'check' phase with
  custom function.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:32 +01:00
Arun Isaac 315944a393
gnu: Add python-pylint. 
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:31 +01:00
Arun Isaac 61550dedf3
gnu: Add python2-coverage-test-runner. 
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:31 +01:00
Arun Isaac 23db3fc67d
gnu: Add python-configparser. 
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 965a083ed2
gnu: Add python2-backports-functools-lru-cache. 
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 6ba0af7960
gnu: Add python-isort. 
* gnu/packages/python.scm (python-isort, python2-isort): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac d5ef113c05
gnu: Add python-astroid. 
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 6fdbd86d0f
gnu: Add libircclient. 
* gnu/packages/messaging.scm (libircclient): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-19 19:18:06 -04:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ludovic Courtès b99eec83b8
gnu: librep: Update to 0.92.6. 
* gnu/packages/sawfish.scm (librep): Update to 0.92.6.
[arguments]: New field.
[native-inputs]: Add AUTOCONF-WRAPPER, AUTOMAKE, and LIBTOOL.
 2017-03-19 23:42:58 +01:00
Ludovic Courtès d5c969ce0c
gnu: lsh: Use libc's argp instead of the bundled one. 
* gnu/packages/ssh.scm (lsh)[arguments] <#:configure-flags>: Add
--with-system-argp and CPPFLAGS=-DHAVE_ARGP_PARSE.
<#:phases>: In 'pre-configure' phase, modify src/Makefile.in.
 2017-03-19 23:42:57 +01:00
Ludovic Courtès 5927a843b4
gnu: python-minimal@2: Add dependencies on libffi and zlib. 
* gnu/packages/python.scm (python2-minimal)[inputs]: Add LIBFFI and ZLIB.
[arguments]: Remove.
 2017-03-19 23:42:57 +01:00
Ludovic Courtès 4ed0628737
gnu: elogind: Build with gperf 3.0. 
* gnu/packages/gperf.scm (gperf-3.0): New variable.
* gnu/packages/freedesktop.scm (elogind)[native-inputs]: Use GPERF-3.0
instead of GPERF.
 2017-03-19 23:42:57 +01:00
rennes e05fc441cd
gnu: Add pdfgrep. 
* guix/gnu/packages/pdf.scm (pdfgrep): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-03-19 18:30:10 -04:00
Leo Famulari 4c20b0bcf7
gnu: graphite2: Fix test failure caused by rounding error on 32-bit CPUs. 
* gnu/packages/patches/graphite2-ffloat-store.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (graphite2): Use it.
 2017-03-19 17:32:44 -04:00
Mark H Weaver 8299c697af
gnu: linux-libre: Update to 4.10.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.4.
(%linux-libre-hash): Update hash.
 2017-03-19 17:18:15 -04:00
Mark H Weaver 92c42164a2
gnu: linux-libre@4.9: Update to 4.9.16. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.16.
 2017-03-19 17:16:38 -04:00
Mark H Weaver 9baf0171a4
gnu: linux-libre@4.4: Update to 4.4.55. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.55.
 2017-03-19 17:14:56 -04:00
Danny Milosavljevic fc1bfca253
gnu: u-boot: Update to 2017.03. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.03.
 2017-03-19 21:35:17 +01:00
Mark H Weaver 717c659630
gnu: mesa: Fix another typo. 
This is a followup to commit 2a8b89c27f.

* gnu/packages/gl.scm (mesa)[arguments]: Fix typo (galluim -> gallium).
 2017-03-19 16:05:16 -04:00
Mark H Weaver 6191fef4e0
gnu: icecat: Add selected fixes from upstream mozilla-esr45. 
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes from
the upstream mozilla-esr45 repository.
 2017-03-19 15:55:06 -04:00
Mark H Weaver 512fc6db7b
gnu: libevent@2.0: Add fix from upstream. 
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.

* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
 2017-03-19 15:54:58 -04:00
Ludovic Courtès 7c86c03109
gnu: guile-commonmark: Default to Guile 2.2. 
* gnu/packages/guile.scm (guile-commonmark)[inputs]: Replace GUILE-2.0
with GUILE-2.2.
(guile2.0-commonmark): New variable.
(guile2.2-commonmark): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-COMMONMARK.
 2017-03-19 18:14:22 +01:00
Ludovic Courtès bdf1022dec
gnu: guile-reader: Default to Guile 2.2. 
* gnu/packages/guile.scm (guile-reader)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.0-reader): New variable.
(guile2.2-reader): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-READER instead of
GUILE2.2-READER.
 2017-03-19 18:14:22 +01:00
Ludovic Courtès bd19f65a85
gnu: haunt: Default to Guile 2.2. 
* gnu/packages/guile.scm (haunt)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
[propagated-inputs]: Replace GUILE-READER and GUILE-COMMONMARK with
their 2.2 variant.
(guile2.0-haunt): New variable.
(guile2.2-haunt): Mark as deprecated.
 2017-03-19 18:14:22 +01:00
Ludovic Courtès 8f4acad71b
gnu: Add 'package-for-guile-2.0'. 
* gnu/packages/guile.scm (guile-2.2-package-name): Rename to...
(guile-variant-package-name): ... this.  Change to return a lambda.
(package-for-guile-2.2): Adjust accordingly.
(package-for-guile-2.0): New procedure.
 2017-03-19 18:14:22 +01:00
Ludovic Courtès f6396d862f
gnu: Rename "guile-next" to "guile". 
* gnu/packages/guile.scm (guile-next): Rename to...
(guile-2.2): ... this.  Update users.
[name]: Change to "guile".
[synopsis]: Remove.
[properties]: Remove 'upstream-name', 'ftp-server', and
'ftp-directory'.
* gnu/packages/bioinformatics.scm (rcas-web): Update accordingly.
* gnu/packages/tls.scm (gnutls/guile-2.2): Likewise.
* tests/guix-build.sh: Use 'guile@2.2' instead of 'guile-next'.
* doc/guix.texi (Package Transformation Options): Update examples that
referred to "guile-next".
 2017-03-19 18:14:22 +01:00
Manolis Ragkousis 8df672aad5
gnu: Add GNU Mach. 
* gnu/packages/hurd.scm (gnumach): New variable.

Co-authored-by: Rene Saavedra <rennes@openmailbox.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-19 18:14:22 +01:00
Ricardo Wurmus f729a4d8b2
gnu: niftilib: Simplify build phases. 
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
 2017-03-19 14:26:33 +01:00
Efraim Flashner ea50fb8d03
gnu: libepoxy: Add support for aarch64. 
* gnu/packages/gl.scm (libepoxy)[arguments]: Add substitution to support
aarch64.
 2017-03-19 11:13:08 +02:00
Efraim Flashner 3d3d4014c2
gnu: libepoxy: Update to 1.4.1. 
* gnu/packages/gl.scm (libepoxy): Update to 1.4.1.
[home-page]: Use https.
 2017-03-19 10:56:40 +02:00
Efraim Flashner eba72e1716
gnu: apl: Update to 1.7. 
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
 2017-03-18 21:28:20 +02:00
Christopher Allan Webber 525acb6e82
gnu: guile-8sync: Update to 0.4.2. 
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
 2017-03-18 12:22:13 -05:00
Taylan Ulrich Bayırlı/Kammer 57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH. 
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
  files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
  prevent problems anymore.
 2017-03-18 18:26:11 +01:00
Danny Milosavljevic 7601b9f7ce
gnu: wine: Update to 2.4. 
* gnu/packages/wine.scm (wine): Update to 2.4.
 2017-03-18 17:26:02 +01:00
John Darrington 21122bd79e
gnu: Add niftilib. 
* gnu/packages/image.scm (niftilib): New variable.
 2017-03-18 15:25:59 +01:00
ng0 d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110. 
* gnu/packages/irc.scm (limnoria): Update to 20170110.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-18 11:51:21 +01:00
Danny Milosavljevic 84aac61c81
gnu: rustc: Fix process test. 
* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests.  Add another substitution.
 2017-03-18 10:37:02 +01:00
John Darrington 6d5f63b690
gnu: Add maxflow. 
* gnu/packages/maths.scm (maxflow): New variable.
 2017-03-18 10:31:54 +01:00
John Darrington a53d6719bc
gnu: Add itpp. 
* gnu/packages/maths.scm (itpp): New variable.
 2017-03-18 10:31:50 +01:00
Tobias Geerinckx-Rice b6bd9a79d4
gnu: emacs-slime: Update to 2.19. 
* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
 2017-03-18 01:49:38 +01:00
Ben Woodcroft 55f7a27cee
gnu: ocaml-qtest: Update to 2.5. 
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
 2017-03-18 09:52:29 +10:00
Marius Bakke 7c78beb33c
gnu: libbluray: Update to 1.0.0. 
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
 2017-03-17 20:41:16 +01:00
Marius Bakke 715dd13d8e
gnu: libx264: Update to 20170316-2245. 
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
 2017-03-17 20:41:15 +01:00
Marius Bakke 2a047d59e0
gnu: libwebp: Update to 0.6.0. 
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-17 20:41:15 +01:00
Marius Bakke cbef2796ed
gnu: ninja: Update to 1.7.2. 
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-17 20:41:15 +01:00
Tobias Geerinckx-Rice 039601e097
gnu: btrfs-progs: Use @dfn in description. 
* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
 2017-03-17 20:39:58 +01:00
Tobias Geerinckx-Rice 0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
 2017-03-17 20:39:58 +01:00
Danny Milosavljevic 893bc3f402
gnu: cargo: Use upstream cargo. 
* gnu/packages/rust.scm (cargo): Use upstream cargo.
 2017-03-17 16:48:08 +01:00
Danny Milosavljevic b0dcb529af
gnu: rust: Update to 1.15.0. 
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
 2017-03-17 16:48:06 +01:00
Kei Kebreau 8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool. 
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
 2017-03-17 11:36:27 -04:00
ng0 114a325e8f
gnu: Add libpng-apng. 
* gnu/packages/image.scm (libpng-apng): New variable.

Co-authored-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-17 11:25:15 -04:00
Ben Woodcroft 0a3063d640
gnu: Add ocaml-mcl. 
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
 2017-03-17 21:43:27 +10:00
Ben Woodcroft ba1be533ad
gnu: Add ocaml-gsl. 
* gnu/packages/maths.scm (ocaml-gsl): New variable.
 2017-03-17 21:43:25 +10:00
Ben Woodcroft 91df9eaefa
gnu: Add ocaml-csv. 
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
 2017-03-17 21:43:13 +10:00
Ben Woodcroft 0c4dbdc23e
gnu: Add ocaml-sqlite3. 
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
 2017-03-17 21:19:23 +10:00
Ricardo Wurmus ef71ed8ffa
gnu: snakemake: Update to 3.11.2. 
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
 2017-03-17 10:14:03 +01:00
Ricardo Wurmus 60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems. 
Fixes <https://bugs.gnu.org/25598>.

* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal. 
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus f1fe5283c9
gnu: Add r-with-recommended-packages. 
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages. 
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 4b005c7a75
gnu: Add r-spatial. 
* gnu/packages/statistics.scm (r-spatial): New variable.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 567b154fb0
gnu: r-rpart: Move to the set of recommended packages. 
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus a5a343656b
gnu: r-nnet: Move to set of recommended R packages. 
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 248f65269a
gnu: Add r-nlme. 
* gnu/packages/statistics.scm (r-nlme): New variable.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 060c12868b
gnu: r-lattice: Move to other recommended R packages. 
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus e88bad6ddb
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 69fddd2d6e
gnu: Add r-foreign. 
* gnu/packages/statistics.scm (r-foreign): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus c1999c5910
gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus a27bfb8484
gnu: Add r-cluster. 
* gnu/packages/statistics.scm (r-cluster): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 7489258751
gnu: Add r-class. 
* gnu/packages/statistics.scm (r-class): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus c7e80a7e0d
gnu: Add r-mass. 
* gnu/packages/statistics.scm (r-mass): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 8f0069170c
gnu: Add r-boot. 
* gnu/packages/statistics.scm (r-boot): New variable.
 2017-03-17 10:14:00 +01:00
Tobias Geerinckx-Rice 54d556bdd7
gnu: youtube-dl: Update to 2017.03.16. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
 2017-03-17 03:11:35 +01:00
Kei Kebreau 3078821d13
gnu: asciidoc: Use local docbook-xml package. 
* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
 2017-03-16 21:35:50 -04:00
Tobias Geerinckx-Rice f9cdf1c15b
gnu: Add knot. 
* gnu/packages/dns.scm (knot): New variable.
 2017-03-17 02:32:01 +01:00
Tobias Geerinckx-Rice 754667f0eb
gnu: Add liburcu. 
* gnu/packages/datastructures.scm (liburcu): New variable.
 2017-03-17 02:32:00 +01:00
Tobias Geerinckx-Rice 366efcb2fb
gnu: dns: Fix typo and use @dfn in descriptions. 
* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
 2017-03-17 02:32:00 +01:00
Leo Famulari 2ec5ba859f
gnu: linux-libre: Update to 4.10.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
 2017-03-16 19:40:40 -04:00
Leo Famulari 2044306f05
gnu: linux-libre@4.4: Update to 4.4.54. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
 2017-03-16 19:40:39 -04:00
Leo Famulari bcc5b74173
gnu: linux-libre@4.9: Update to 4.9.15. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
 2017-03-16 19:40:39 -04:00
Leo Famulari 49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}. 
* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
 2017-03-16 19:40:08 -04:00
Leo Famulari 1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386. 
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
 2017-03-16 19:39:55 -04:00
Leo Famulari 38c4ca4141
gnu: mesa: Fix typo. 
The typo caused the configure phase to fail like this:

"configure: error: classic DRI driver '915' does not exist"

This is a followup to commit c5e91014a2.

* gnu/packages/gl.scm (mesa)[arguments]: Fix typo in #:configure-flags.
 2017-03-16 17:51:56 -04:00
Clément Lassieur 2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19. 
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2017-03-16 19:58:43 +01:00
Raoul Jean Pierre Bonnal 2441c28414
gnu: Add r-seurat. 
* gnu/packages/bioinformatics.scm (r-seurat): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-03-16 14:54:58 +01:00
Ricardo Wurmus 79849358f8
gnu: sra-tools: Update to 2.8.2-1. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
 2017-03-16 13:40:36 +01:00
Ricardo Wurmus d5e1716239
gnu: ncbi-vdb: Install configuration files. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
 2017-03-16 13:39:53 +01:00
Ricardo Wurmus 558e23074e
gnu: ncbi-vdb: Override search path for java-ngs. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
 2017-03-16 13:38:39 +01:00
Efraim Flashner 4cacd87e4d
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-16 13:11:28 +02:00
Ricardo Wurmus 701111989e
gnu: ncbi-vdb: Use modify-phases syntax. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
 2017-03-16 10:20:56 +01:00
Ricardo Wurmus 5021f54787
gnu: ncbi-vdb: Update to 2.8.2. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
 2017-03-16 10:19:25 +01:00
Ricardo Wurmus 6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
 2017-03-16 10:18:48 +01:00
Ricardo Wurmus 56f76b08be
gnu: jack-2: Fix build by patching fast_rand. 
* gnu/packages/audio.scm (jack-2)[arguments]: Add phase "patch-fast_rand" to
apply upstream fixes.
 2017-03-16 09:41:20 +01:00
Leo Famulari 5707ce6e4b
Revert "gnu: bdftopcf: Use libxfont2." 
Building with libxfont2 leads to an error in the configure phase:

"No package 'xfont' found"

This reverts commit 2060b4d95f.
 2017-03-16 02:06:56 -04:00
Tobias Geerinckx-Rice 0f03c53168
gnu: Add pzstd. 
* gnu/packages/compression.scm (pzstd): New variable.
 2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice f6ac3101ff
gnu: Add zstd. 
* gnu/packages/compression.scm (zstd): New variable.
 2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice 9186216268
gnu: python-publicsuffix2: Update to 2.20160818. 
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
 2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice 192b887a03
gnu: awscli: Update to 1.11.63. 
* gnu/packages/python.scm (awscli): Update to 1.11.63.
 2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice d93985fe22
gnu: python-botocore: Update to 1.5.26. 
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
 2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice 70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1. 
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
 2017-03-16 05:44:01 +01:00
Kei Kebreau 26a657f06a
gnu: Add prboom-plus. 
* gnu/packages/games.scm (prboom-plus): New variable.
 2017-03-15 23:14:42 -04:00