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329 Commits

Author SHA1 Message Date
Ricardo Wurmus c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus c86fc96987
gnu: r-inspect: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus cad6fb2dec
gnu: Add r-plgem. 
* gnu/packages/bioconductor.scm (r-plgem): New variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 45dcd7dcfd
gnu: r-rots: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 0b469ee225
gnu: r-glimma: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 7f2b1c4af0
gnu: r-goseq: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus add2b19561
gnu: r-chippeakanno: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 41ffc214e4
gnu: Add r-chipexoqual. 
* gnu/packages/bioconductor.scm (r-chipexoqual): New variable.
 2018-11-27 23:56:23 +01:00
Ricardo Wurmus a961ae469c
gnu: Add r-destiny. 
* gnu/packages/bioconductor.scm (r-destiny): New variable.
 2018-11-09 17:15:31 +01:00
Ricardo Wurmus 8a587c89af
gnu: Add r-savr. 
* gnu/packages/bioconductor.scm (r-savr): New variable.
 2018-11-09 16:45:21 +01:00
Ricardo Wurmus d639d8884c
gnu: r-regioner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 286157dc49
gnu: Add r-biocneighbors. 
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 318bcbc451
gnu: r-dnabarcodes: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6f1e1d0f88
gnu: r-inspect: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus c348cfed74
gnu: r-rots: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 016afac30f
gnu: r-glimma: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6ea9ae9c39
gnu: r-goseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus b858338c76
gnu: r-ctc: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus bbc4787cf2
gnu: r-interactionset: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus c4fed658a9
gnu: r-riboseqr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus e22e462b33
gnu: r-riboprofiling: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus e9427b2c78
gnu: r-ripseeker: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus aa802eafb6
gnu: r-chipcomp: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 4728e27511
gnu: r-bayseq: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 14520b640e
gnu: r-graph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 95ee4a466b
gnu: r-multtest: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus a92f523026
gnu: r-qdnaseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 9add0933d0
gnu: r-cghcall: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 46cdceef4c
gnu: r-cghbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus f1c606ce8c
gnu: r-marray: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 98652568a4
gnu: r-diffbind: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus 6168692159
gnu: r-hpar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus 09aa3d063a
gnu: Add r-ruvseq. 
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
 2018-10-22 13:00:24 +02:00
Ricardo Wurmus f6e9976393
gnu: Add r-dnabarcodes. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.
 2018-10-08 14:19:04 +02:00
Ricardo Wurmus 35c076e619
gnu: r-chippeakanno: Update to 3.14.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
 2018-09-09 22:26:02 +02:00
Ricardo Wurmus a207bca2ad
gnu: r-codedepends: Move from cran to bioconductor. 
* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
 2018-09-05 20:03:08 +02:00
Ricardo Wurmus 5dfe491290
gnu: r-graph: Move from bioinformatics to bioconductor. 
* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
 2018-09-05 20:03:08 +02:00
Ricardo Wurmus 65050163e0
gnu: r-chippeakanno: Update to 3.14.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.1.
 2018-09-05 20:03:03 +02:00
Ricardo Wurmus b64ce4b725
gnu: Add r-inspect. 
* gnu/packages/bioconductor.scm (r-inspect): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus aa388dc7b9
gnu: Add r-rots. 
* gnu/packages/bioconductor.scm (r-rots): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus f4235c0eca
gnu: Add r-glimma. 
* gnu/packages/bioconductor.scm (r-glimma): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 5da0e14285
gnu: Add r-goseq. 
* gnu/packages/bioconductor.scm (r-goseq): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 27c51606ae
gnu: Add r-ctc. 
* gnu/packages/bioconductor.scm (r-ctc): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 2cc5110832
gnu: Add r-genelendatabase. 
* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus cf9a29b24c
gnu: Add r-genomicinteractions. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
 2018-06-15 09:14:01 +02:00
Ricardo Wurmus a32279ffb6
gnu: Add r-interactionset. 
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
 2018-06-15 09:14:01 +02:00
Ricardo Wurmus 6ffdfe6a01
gnu: Add r-riboseqr. 
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
 2018-06-15 07:43:23 +02:00
Ricardo Wurmus 0490f9de88
gnu: Add r-riboprofiling. 
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 609f4ad12f
gnu: Add r-chipcomp. 
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 2bece692a6
gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New
variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 6fbd759b13
gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New
variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus dfac7eb917
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked):
New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus bb15b581f7
gnu: Add r-bayseq. 
* gnu/packages/bioconductor.scm (r-bayseq): New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 5c0df206cf
gnu: r-cghcall: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 205df4a4cb
gnu: r-cghbase: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 6748708883
gnu: r-marray: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus f794e85daa
gnu: r-chippeakanno: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 43734b4727
gnu: r-ripseeker: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 45bbccf4e7
gnu: r-diffbind: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 72427c721d
gnu: r-regioner: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 2f5b3d8e90
gnu: r-hpar: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 183db725a4
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm6. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6): New variable.
 2018-05-15 12:56:53 +02:00
Tobias Geerinckx-Rice f39938b177
gnu: r-multtest: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.36.0.
 2018-05-04 02:22:01 +02:00
Roel Janssen 0ef8cc9c1c
gnu: Add r-qdnaseq. 
* gnu/packages/bioconductor.scm (r-qdnaseq): New variable.
 2018-04-24 14:12:32 +02:00
Roel Janssen 67ee83d6c3
gnu: Add r-cghcall. 
* gnu/packages/bioconductor.scm (r-cghcall): New variable.
 2018-04-24 14:12:15 +02:00
Roel Janssen 0416a0d4d5
gnu: Add r-cghbase. 
* gnu/packages/bioconductor.scm (r-cghbase): New variable.
 2018-04-24 14:11:51 +02:00
Roel Janssen 164502d819
gnu: Add r-marray. 
* gnu/packages/bioconductor.scm (r-marray): New variable.
 2018-04-24 14:11:19 +02:00
Roel Janssen 793f83efe1
gnu: Add r-chippeakanno. 
* gnu/packages/bioconductor.scm (r-chippeakanno): New variable.
 2018-04-24 13:59:39 +02:00
Roel Janssen a6ae9ffd6a
gnu: Add r-multtest. 
* gnu/packages/bioconductor.scm (r-multtest): New variable.
 2018-04-24 13:59:33 +02:00
Roel Janssen 6d94bf6baa
gnu: Add r-ripseeker. 
* gnu/packages/bioconductor.scm (r-ripseeker): New variable.
 2018-04-24 13:34:29 +02:00
Roel Janssen a5b56a5346
gnu: Add r-diffbind. 
* gnu/packages/bioconductor.scm (r-diffbind): New variable.
 2018-04-24 13:33:56 +02:00
Roel Janssen 183ce98849
gnu: Add r-regioner. 
* gnu/packages/bioconductor.scm (r-regioner): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-30 10:47:57 -04:00
Ricardo Wurmus fa5965990d
gnu: Add r-hpar. 
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-02 23:24:57 +01:00