a48a1071a6
gnu: libgit2: Patch use-after-free.
...
* gnu/packages/patches/libgit2-use-after-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (libgit2)[inputs]: Add it.
[arguments] <#:phases>: Add 'apply-patch' phase.
2017-03-28 00:32:37 +02:00
bc4a2b853c
gnu: lm-sensors: Use a descriptive file name for the source tarball.
...
* gnu/packages/linux.scm (lm-sensors)[source]: Add file-name field.
2017-03-27 14:32:29 -04:00
bd9b8d89ad
gnu: mcelog: Update to 149.
...
* gnu/packages/linux.scm (mcelog): Update to 149.
2017-03-27 20:20:06 +02:00
81d95a121a
gnu: corkscrew: Install the README file.
...
* gnu/packages/ssh.scm (corkscrew)[arguments]: Add a very basic
‘install-documentation’ phase.
2017-03-27 20:20:05 +02:00
1e4063010d
gnu: haunt: Disable test suite.
...
* gnu/packages/guile.scm (haunt): Disable test suite.
2017-03-27 14:18:17 -04:00
b1a8fd2d2c
gnu: libreoffice: Update to 5.3.1.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.1.2.
[inputs]: Add libstaroffice and libzmf.
[arguments]: Remove reference to removed patch; unpack xmlsec 1.2.23 tarball.
(xmlsec-src-libreoffice): Update to version 1.2.23 tarball.
2017-03-27 20:17:02 +02:00
90ac806d3a
gnu: orcus: Update to 0.12.1.
...
* gnu/packages/libreoffice.scm (orcus): Update to 0.12.1.
[inputs]: Add python.
2017-03-27 20:16:47 +02:00
b85b56dd7b
gnu: libetonyek: Update to 0.1.6.
...
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.6.
[arguments]: Add phase 'autoreconf, because configure.ac is patched. Add
configure flag "--with-mdds=1.2".
[inputs]: Add liblangtag.
[native-inputs]: Add autoconf and automake.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-27 20:16:32 +02:00
22e52dbd06
gnu: Add libstaroffice.
...
* gnu/packages/libreoffice.scm (libstaroffice): New variable.
2017-03-27 20:16:19 +02:00
68c6110c20
gnu: Add grafx2.
...
* gnu/packages/game-development.scm (grafx2): New variable.
2017-03-27 14:16:02 -04:00
cb38643924
gnu: ixion: Update to 0.12.2.
...
* gnu/packages/libreoffice.scm (ixion): Update to 0.12.2.
[inputs]: Replace python-2 by python.
2017-03-27 20:15:51 +02:00
57144094b8
gnu: mdds: Upgrade to 1.2.2.
...
* gnu/packages/boost.scm (mdds): Upgrade to 1.2.2.
2017-03-27 20:15:36 +02:00
741916f114
gnu: Add libzmf.
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* gnu/packages/libreoffice.scm (libzmf): New Variable.
2017-03-27 20:15:04 +02:00
ccfac09c82
gnu: geoclue: Update to 2.4.6.
...
* gnu/packages/gnome.scm (geoclue): Update to 2.4.6.
2017-03-27 11:57:42 -04:00
10c95711b4
gnu: corkscrew: Improve descriptions.
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* gnu/packages/ssh.scm (corkscrew)[synopsis, description]: Fix typos and
condense. Remove scary warning (the tunnel is always encrypted through
SSH) and speculation.
2017-03-27 17:42:52 +02:00
040ae44aa1
gnu: corkscrew: Download source from a mirror.
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* gnu/packages/ssh.scm (corkscrew)[source]: Use
‘https://downloads.openwrt.org’ .
2017-03-27 17:42:51 +02:00
a800c2175f
gnu: mosh: Update to 1.3.0.
...
* gnu/packages/ssh.scm (mosh): Update to 1.3.0.
2017-03-27 17:42:51 +02:00
f051d83c32
gnu: youtube-dl: Update to 2017.03.26.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.26.
2017-03-27 17:42:51 +02:00
6e64766a86
gnu: gnuplot: Enable tikz backend.
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* gnu/packages/maths.scm (gnuplot)[inputs]: Add lua.
2017-03-27 15:58:50 +02:00
689db38e34
ui: Support Texinfo markup in package synopses.
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* guix/ui.scm (package-field-string): New procedure.
(package-description-string): Use it.
(package-synopsis-string): New procedure.
(package->recutils): Use it.
* guix/scripts/lint.scm (check-synopsis-style)[check-texinfo-markup]:
New procedure. Use it in checks.
* tests/lint.scm: Test it.
* gnu/packages/perl.scm (perl-try-tiny)[synopsis]: Adjust for the
Texinfo markup.
2017-03-27 10:55:16 +03:00
b5a1359d44
gnu: mumble: Fix build after speex update.
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* gnu/packages/telephony.scm (mumble)[inputs]: Add SPEEXDSP.
2017-03-26 23:47:38 +02:00
01229cbe16
gnu: Add speexdsp.
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* gnu/packages/xiph.scm (speexdsp): New variable. Export it.
2017-03-26 23:47:37 +02:00
5d073bdb05
Revert "gnu: audacity: Use gtk+@3."
...
It appears that Audacity does not yet support GTK+-3 fully; the user interface
was unusable with this change.
This reverts commit 36e17ab417
2017-03-26 16:26:29 -04:00
20413597b6
gnu: claws-mail: Update to 3.15.0.
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* gnu/packages/mail.scm (claws-mail): Update to 3.15.0.
2017-03-26 16:59:44 +02:00
a1eba1bec1
gnu: Add emacs-monroe.
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* gnu/packages/emacs.scm (emacs-monroe): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-26 16:00:18 +02:00
7f7b38af9e
gnu: Add emacs-keyfreq.
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* gnu/packages/emacs.scm (emacs-keyfreq): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-26 15:56:19 +02:00
7398d96ee9
gnu: perl-scalar-list-utils: Update to 1.47.
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* gnu/packages/perl.scm (perl-scalar-list-utils): Update to 1.47.
2017-03-26 11:33:37 +02:00
78bf9e01c0
gnu: perl-parse-cpan-meta: Update to 2.150010.
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* gnu/packages/perl.scm (perl-parse-cpan-meta): Update to 2.150010.
2017-03-26 11:33:37 +02:00
f3312bc191
gnu: perl-cpan-meta-yaml: Update to 0.018.
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* gnu/packages/perl.scm (perl-cpan-meta-yaml): Update to 0.018.
2017-03-26 11:33:37 +02:00
2dfd0d7b9c
gnu: perl-cpan-meta-requirements: Update to 2.140.
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* gnu/packages/perl.scm (perl-cpan-meta-requirements): Update to 2.140.
2017-03-26 11:33:37 +02:00
687d2c4fe2
gnu: perl-yaml: Update to 1.23.
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* gnu/packages/perl.scm (perl-yaml): Update to 1.23.
2017-03-26 11:33:37 +02:00
7b34de5f84
gnu: perl-variable-magic: Update to 0.61.
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* gnu/packages/perl.scm (perl-variable-magic): Update to 0.61.
2017-03-26 11:33:37 +02:00
9b882dcc0c
gnu: perl-time-duration-parse: Update to 0.13.
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* gnu/packages/perl.scm (perl-time-duration-parse): Update to 0.13.
2017-03-26 11:33:37 +02:00
cbe50be4c9
gnu: perl-test-warnings: Update to 0.026.
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* gnu/packages/perl.scm (perl-test-warnings): Update to 0.026.
2017-03-26 11:33:37 +02:00
3cb9d58ad6
gnu: perl-test-simple: Update to 1.302078.
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* gnu/packages/perl.scm (perl-test-simple): Update to 1.302078.
2017-03-26 11:33:36 +02:00
ffdbbcc812
gnu: perl-test-exception: Update to 0.43.
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* gnu/packages/perl.scm (perl-test-exception): Update to 0.43.
2017-03-26 11:33:36 +02:00
0ac43aaa69
gnu: perl-test-cleannamespaces: Update to 0.22.
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* gnu/packages/perl.scm (perl-test-cleannamespaces): Update to 0.22.
2017-03-26 11:33:36 +02:00
be7e54325e
gnu: perl-sub-name: Update to 0.21.
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* gnu/packages/perl.scm (perl-sub-name): Update to 0.21.
2017-03-26 11:33:36 +02:00
84c73b7f45
gnu: perl-params-validate: Update to 1.26.
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* gnu/packages/perl.scm (perl-params-validate): Update to 1.26.
2017-03-26 11:33:36 +02:00
3857a3fc2a
gnu: perl-package-deprecationmanager: Update to 0.17.
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* gnu/packages/perl.scm (perl-package-deprecationmanager): Update to 0.17.
2017-03-26 11:33:36 +02:00
0d01f517d0
gnu: perl-moose: Update to 2.2004.
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* gnu/packages/perl.scm (perl-moose): Update to 2.2004.
2017-03-26 11:33:36 +02:00
c4fcf35420
gnu: perl-module-runtime-conflicts: Update to 0.003.
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* gnu/packages/perl.scm (perl-module-runtime-conflicts): Update to 0.003.
2017-03-26 11:33:36 +02:00
0c61441a7f
gnu: perl-devel-partialdump: Update to 0.18.
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* gnu/packages/perl.scm (perl-devel-partialdump): Update to 0.18.
2017-03-26 11:33:36 +02:00
2d31b7f19b
gnu: perl-devel-overloadinfo: Update to 0.004.
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* gnu/packages/perl.scm (perl-devel-overloadinfo): Update to 0.004.
2017-03-26 11:33:36 +02:00
be2b42a7f6
gnu: perl-cpan-meta-check: Update to 0.011.
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* gnu/packages/perl.scm (perl-cpan-meta-check): Update to 0.011.
2017-03-26 11:33:36 +02:00
a00afca443
gnu: perl-common-sense: Update to 3.74.
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* gnu/packages/perl.scm (perl-common-sense): Update to 3.74.
2017-03-26 11:33:35 +02:00
a941be6a3c
gnu: perl-clone: Update to 0.38.
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* gnu/packages/perl.scm (perl-clone): Update to 0.38.
2017-03-26 11:33:35 +02:00
fb89fc0cde
gnu: perl-class-load: Update to 0.23.
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* gnu/packages/perl.scm (perl-class-load): Update to 0.23.
2017-03-26 11:33:35 +02:00
4c08a8a67a
gnu: perl-capture-tiny: Update to 0.46.
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* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.46.
2017-03-26 11:33:35 +02:00
ee6d716234
gnu: perl-b-hooks-endofscope: Update to 0.21.
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* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.21.
2017-03-26 11:33:35 +02:00
033dec64cc
gnu: Add perl-test-needs.
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* gnu/packages/perl.scm (perl-test-needs): New variable.
2017-03-26 11:33:35 +02:00
21b7cf4287
gnu: Add perl-file-pushd.
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* gnu/packages/perl.scm (perl-file-pushd): New variable
2017-03-26 11:33:35 +02:00
6ff5e9baea
gnu: denemo: Update to 2.1.
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* gnu/packages/music.scm (denemo): Update to 2.1.
2017-03-26 12:13:27 +03:00
727bec13a3
gnu: po4a: Make manpages writable before resetting timestamps.
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* gnu/packages/gettext.scm (po4a)[arguments]: Add
'make-compressed-files-writable' phase.
2017-03-26 11:06:46 +02:00
23bd8f556e
gnu: bigloo: Fix build failure in ld.
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* gnu/packages/scheme.scm (bigloo)[arguments]<#:configure-flags>: Add --cflags=-fPIC.
2017-03-26 10:42:51 +02:00
b1554326bb
gnu: libsvgtiny: Build with gperf@3.0.
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* gnu/packages/web.scm (libsvgtiny)[native-inputs]: Change GPERF to GPERF-3.0.
2017-03-26 09:36:00 +02:00
5ac097e28c
gnu: libpqxx: Fix build with newer sed.
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* gnu/packages/databases.scm (libpqxx)[arguments]: Add 'fix-sed-command' phase
that corrects a typo in the configure script.
2017-03-26 09:16:04 +02:00
82654d956f
gnu: aseprite: Downgrade to 1.1.7.
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* gnu/packages/game-development.scm (aseprite): Downgrade to 1.1.7.
2017-03-26 10:14:04 +03:00
81e752d92e
gnu: linux-libre: Update to 4.10.5.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.5.
(%linux-libre-hash): Update hash.
2017-03-26 03:12:33 -04:00
bd0423262a
gnu: linux-libre@4.9: Update to 4.9.17.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.17.
2017-03-26 03:10:25 -04:00
3c67367612
gnu: linux-libre@4.4: Update to 4.4.56.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.56.
2017-03-26 03:09:06 -04:00
14d0db40ff
gnu: vte-ng: Build with gperf@3.0.
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* gnu/packages/gnome.scm (vte-ng)[native-inputs]: Change GPERF to GPERF-3.0.
2017-03-26 08:29:19 +02:00
3c5698046a
gnu: libtorrent-rasterbar: Update to 1.1.2.
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* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.2.
[source]: Use patch.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-26 07:49:50 +02:00
ff4dc16eac
gnu: aseprite: Update to 1.1.13.
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* gnu/packages/game-development.scm (aseprite): Update to 1.1.13.
[source]: Switch to release archive.
2017-03-26 07:09:12 +02:00
d1e3f59c9b
gnu: coreutils: Patch 'cut' unit test on ARM.
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Fixes <https://bugs.gnu.org/26253 >.
* gnu/packages/patches/coreutils-cut-huge-range-test.patch: New file.
* gnu/packages/base.scm (coreutils)[native-inputs]: Add it as an input.
[arguments] <#:phases>: On ARM, add 'patch-cut-test' phase.
* gnu/local.mk (dist_patch_DATA): Add 'coreutils-cut-huge-range-test.patch'.
2017-03-25 23:31:10 +01:00
5f19fb6a26
system: grub: Don't attempt to load non-EFI modules on EFI.
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This resulted in a couple of harmless warnings just before the menu is
displayed.
* gnu/system/grub.scm (eye-candy)[setup-gfxterm-body]: Move 'vbe' and
'vga' loading to the non-EFI branch.
2017-03-25 22:50:24 +01:00
c5be3467f2
gnu: python2-dogtail: Update to 0.9.9.
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* gnu/packages/python.scm (python2-dogtail): Update to 0.9.9.
[source]: Download using pypi-uri scheme.
2017-03-25 23:53:03 +03:00
ac7a8f1ff8
gnu: xorg-server-xwayland: Add missing input.
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* gnu/packages/xorg.scm (xorg-server-xwayland)[inputs]: Remove libepoxy,
add wayland-protocols.
2017-03-25 23:19:17 +03:00
17fc8da3dd
gnu: git: Update to 2.12.2.
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* gnu/packages/version-control.scm (git): Update to 2.12.2.
2017-03-25 20:17:04 +01:00
5e53557ed0
gnu: maim: Update to 4.4.62.
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* gnu/packages/xdisorg.scm (maim): Update to 4.4.62.
2017-03-25 20:12:44 +01:00
90ff097995
gnu: youtube-dl: Update to 2017.03.24.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.24.
2017-03-25 19:40:10 +01:00
6a052473aa
gnu: pcc: Remove aarch64-linux from %supported-systems.
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* gnu/packages/c.scm (pcc)[supported-systems]: New field.
2017-03-25 21:30:25 +03:00
97b7201f99
gnu: tcc: Remove aarch64-linux from %supported-systems.
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* gnu/packages/c.scm (tcc)[supported-systems]: Remove aarch64-linux from
the %supported-systems.
2017-03-25 21:24:18 +03:00
7e58cbbb39
gnu: Add shellcheck.
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* gnu/packages/haskell.scm (shellcheck): New variable.
2017-03-25 15:02:11 +01:00
6f8016f4d8
gnu: Add ghc-json.
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* gnu/packages/haskell.scm (ghc-json): New variable.
2017-03-25 15:00:18 +01:00
070e1fe99a
gnu: Add emacs-symon.
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* gnu/packages/emacs.scm (emacs-symon): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-24 17:24:26 -04:00
9260b9d100
services: Add inetd-service-type.
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* gnu/services/networking.scm (<inetd-configuration>, <inetd-entry>): New
record types.
(inetd-config-file, inetd-shepherd-service): New procedures.
(inetd-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
* gnu/tests/networking.scm: New file.
* gnu/local.mk: Add it.
2017-03-24 17:45:56 +01:00
85ac401acf
services: openvpn: Fix a typo which was corrected in generated doc.
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* gnu/services/vpn.scm (define-split-configuration): Fix typo.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:18 +01:00
bfbf6e1e10
gnu: Add tlp service.
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* gnu/services/pm.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/tlp.scm.
* doc/guix.texi (Power management Services): New section.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:17 +01:00
d02c3c2234
services: configuration: Rewrite id procedure.
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* gnu/services/configuration.scm (id): Replace it using the more concise
version found in messaging.scm.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:17 +01:00
e7c797f348
services: Factorize define-maybe macro.
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* gnu/services/configuration.scm (id): New procedure extracted from
define-configuration.
(define-maybe): New exported procedure, moved from messaging.scm.
* gnu/services/messaging.scm (define-maybe): Remove it.
(id): Move declaration inside define-all-configurations which is now
the only caller procedure.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:17 +01:00
32e75b4808
gnu: tlp: Read configuration from /etc/tlp.
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* gnu/packages/linux.scm (tlp): Set TLP_CONF to "/etc/tlp".
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:16 +01:00
4d3d3bd217
gnu: Add emacs-aggresive-indent-mode.
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* gnu/packages/emacs.scm (emacs-aggressive-indent): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-24 14:19:00 +01:00
3d39ab456d
gnu: ccache: Update to 3.3.4.
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* gnu/packages/ccache.scm (ccache): Update to 3.3.4.
2017-03-24 14:53:21 +03:00
2e200ee8c0
gnu: talloc: Update to 2.1.9.
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* gnu/packages/samba (talloc): Update to 2.1.9.
[home-page]: Use https.
2017-03-24 14:16:09 +03:00
c8c1470451
gnu: samba: Update to 4.5.7 [fixes CVE-2017-2619].
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* gnu/packages/samba.scm (samba): Update to 4.5.7.
2017-03-24 14:14:52 +03:00
697ddb8850
services: guix-publish: Add 'compression-level' and 'nar-path' fields.
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* gnu/services/base.scm (<guix-publish-configuration>)[compression-level,
nar-path]: New fields.
(guix-publish-shepherd-service): Honor them.
* doc/guix.texi (Base Services): Document them.
2017-03-24 00:23:29 +01:00
f1e900a3b8
doc: Document 'guix-publish-service-type' instead of 'guix-publish-service'.
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* doc/guix.texi (Base Services): Document 'guix-publish-service-type'
and 'guix-configuration'. Remove 'guix-publish-service'.
(Invoking guix publish): Mention 'guix-publish-service-type'.
* gnu/services/base.scm (guix-publish-service): Mark as deprecated.
(<guix-configuration>): Export getters.
2017-03-24 00:23:29 +01:00
77ab6983a1
gnu: devil: Update to 1.8.0.
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* gnu/packages/patches/devil-CVE-2009-3994.patch,
gnu/packages/patches/devil-fix-libpng.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (devil): Update to 1.8.0.
[source]: Remove patches and snippet.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Disable tests. Remove #:configure-flags and add a
'change-directory' phase. Remove 'fix-tests' phase.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
2017-03-24 00:12:00 +01:00
183303b3ef
gnu: nginx: Update to 1.11.11.
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* gnu/packages/web.scm (nginx): Update to 1.11.11.
2017-03-23 20:00:06 +01:00
42c127e876
gnu: rustc: Simplify configure phase.
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* gnu/packages/rust.scm (rustc): Simplify configure phase.
2017-03-23 19:36:10 +01:00
7fdca77e00
gnu: ustr: Fix build with GCC 5.
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* gnu/packages/patches/ustr-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (ustr)[source]: Use patch.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-23 14:34:09 -04:00
120349bfb4
gnu: rxvt-unicode: Give 'urxvtc.desktop' a unique display name.
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* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: In phase
'install-desktop-urxvtc' add '(client)' to the 'Name' line of the
resulting '.desktop' file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-23 19:33:36 +01:00
096f008014
gnu: rcs: Fix build against gcc-5.4.0.
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* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/patches/rcs-5.9.4-noreturn.patch: New file.
* gnu/packages/version-control.scm (rcs)[source]: Applied patch.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-23 19:26:27 +01:00
359ea6ba29
gnu: knot: Update to 2.4.2.
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* gnu/packages/dns.scm (knot): Update to 2.4.2.
2017-03-23 18:18:53 +01:00
26b16fd9ca
gnu: python-appdirs: Use pypi-uri.
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This is a followup to commit 543782e1ff
2017-03-23 12:06:15 -04:00
ce54f5db7d
gnu: gfortran-5: Move definition before "gfortran".
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This is a follow-up to commit cb4805e34c
2017-03-23 16:34:17 +01:00
cb4805e34c
gnu: gfortran: Change default version to gfortran-5.
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* gnu/packages/gcc.scm (gfortran): Point to gfortran-5.
2017-03-23 15:37:24 +01:00
0371b345e8
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-23 14:53:33 +02:00
8be563a5a3
gnu: dtc: Build with flex-2.6.1.
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* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Use flex-2.6.1 and
not flex.
2017-03-23 14:40:40 +02:00
c53af0016e
gnu: idris: Update to 0.99.1.
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* gnu/packages/idris.scm (idris): Update to 0.99.1.
[inputs]: Add ghc-code-page.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-23 12:59:03 +01:00
df7309fc6e
gnu: Add ghc-code-page.
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* gnu/packages/haskell.scm (ghc-code-page): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-23 12:59:03 +01:00
939b6b113b
gnu: star: Update to 2.5.3a.
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* gnu/packages/bioinformatics.scm (star): Update to 2.5.3a.
2017-03-23 11:21:08 +01:00
d5ceeb5a2d
gnu: scotch: Build with flex-2.6.1.
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* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not
flex.
2017-03-23 07:32:31 +02:00
5302eba611
gnu: libffcall: Remove aarch64-linux from supported systems.
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* gnu/packages/libffcall.scm (libffcall)[supported-systems]: New field,
remove aarch64-linux.
[home-page]: Use https.
2017-03-23 07:32:26 +02:00
b27bd0b057
gnu: youtube-dl: Update to 2017.03.22.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.22.
2017-03-23 02:53:18 +01:00
a06cd95ab0
gnu: python-natsort: Update to 5.0.2.
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* gnu/packages/python.scm (python-natsort): Update to 5.0.2.
2017-03-23 02:53:17 +01:00
e17a12482b
gnu: python2-futures: Update to 3.0.5.
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* gnu/packages/python.scm (python2-futures): Update to 3.0.5.
2017-03-23 02:53:17 +01:00
06fe79f263
gnu: python-rauth: Update to 0.7.3.
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* gnu/packages/python.scm (python-rauth): Update to 0.7.3.
2017-03-23 02:53:17 +01:00
36e0d9db90
gnu: python-ipaddress: Update to 1.0.18.
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* gnu/packages/python.scm (python-ipaddress): Update to 1.0.18.
2017-03-23 02:53:16 +01:00
543782e1ff
gnu: python-appdirs: Update to 1.4.3.
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* gnu/packages/python.scm (python-appdirs): Update to 1.4.3.
2017-03-23 02:53:16 +01:00
80e8d8517a
gnu: python-beautifulsoup4: Update to 4.5.3.
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* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.5.3.
2017-03-23 02:53:15 +01:00
7c4279322e
gnu: python-drmaa: Update to 0.7.7.
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* gnu/packages/python.scm (python-drmaa): Update to 0.7.7.
2017-03-23 02:53:15 +01:00
fd2662e950
gnu: python-sqlalchemy-utils: Update to 0.32.13.
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* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.13.
2017-03-23 02:53:15 +01:00
745d85b7db
gnu: python-pafy: Update to 0.5.3.1.
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* gnu/packages/python.scm (python-pafy): Update to 0.5.3.1.
2017-03-23 02:53:14 +01:00
e20dafd0a1
gnu: gpsbabel: Fix a build failure with GCC 5.
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* gnu/packages/gps.scm (gpsbabel)[arguments]: Add -fPIC to #:configure-flags.
2017-03-22 17:04:46 -04:00
283f04b053
gnu: libffcall: Set source file-name.
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* gnu/packages/libffcall.scm (libffcall)[source]: Add file-name field.
[home-page]: Use https.
2017-03-22 22:36:43 +02:00
359e9c4215
gnu: chicken: Update to 4.12.0.
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* gnu/packages/scheme.scm (chicken): Update to 4.12.0.
2017-03-22 15:31:17 -04:00
44cba47e93
gnu: wine: Build with flex-2.6.1.
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* gnu/packages/wine.scm (wine)[native-inputs]: Use flex-2.6.1 and not
flex.
2017-03-22 21:06:46 +02:00
575a6f0f8a
gnu: binutils-vc4: Build with flex-2.6.1.
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* gnu/packages/embedded.scm (binutils-vc4)[native-inputs]: Use
flex-2.6.1 and not flex.
2017-03-22 19:27:00 +02:00
112d645ffa
gnu: dovecot: Update to 2.2.28.
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* gnu/packages/mail.scm (dovecot): Update to 2.2.28.
2017-03-22 13:04:29 -04:00
9b7a9580d4
gnu: rustc: Honor max line length.
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* gnu/packages/rust.scm (rustc)[arguments]: patch-tests: Honor max line
length.
2017-03-22 17:41:44 +01:00
61a3137bdd
gnu: guix: Update development snapshot.
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* gnu/packages/package-management.scm (guix-devel): Update to 73a4645
2017-03-22 16:05:46 +01:00
493ae57eca
gnu: binutils-vc4: Set source file-name.
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* gnu/packages/embedded.scm (binutils-vc4)[source]: Add file-name field.
2017-03-22 16:10:45 +02:00
dc8a34ed46
gnu: freeimage: Fix build with GCC 5.
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* gnu/packages/patches/freeimage-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
2017-03-22 14:45:44 +01:00
aeb6fe5fa0
gnu: autoconf-archive: Update to 2017.03.21.
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* gnu/packages/autotools.scm (autoconf-archive): Update to 2017.03.21.
2017-03-22 15:35:59 +02:00
5cd074ea32
gnu: guile: Add 'guile-next' as a deprecated alias.
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This is a followup to f6396d862f
2017-03-22 14:05:58 +01:00
326249bab8
gnu: rustc: End resultless phases in #t.
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* gnu/packages/rust.scm (rustc): End resultless phases in #t.
2017-03-22 12:59:32 +01:00
54262c5435
gnu: python-pysam: Run tests in parallel.
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* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
2017-03-22 12:33:28 +01:00
71dbf592c4
gnu: python-pysam: Run tests before installation.
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* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
2017-03-22 12:33:28 +01:00
879b521cd0
gnu: python-pysam: Update to 0.10.0.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
2017-03-22 12:33:24 +01:00
d553cd6015
gnu: python-pysam: Run tests in parallel.
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* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
2017-03-22 12:21:39 +01:00
611154efc8
gnu: python-pysam: Run tests before installation.
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* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
2017-03-22 12:21:39 +01:00
9488776a18
gnu: python-pysam: Update to 0.10.0.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
2017-03-22 12:21:38 +01:00
378de69c59
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-22 12:57:37 +02:00
0e7c3ba1c0
gnu: perl-mojolicious: Update to 7.29.
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* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.29.
2017-03-22 12:56:23 +02:00
c70b50efb9
gnu: perl-io-compress: Update to 2.074.
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* gnu/packages/compression.scm (perl-io-compress): Update to 2.074.
[propagated-inputs]: Update minimum versions to 2.074.
2017-03-22 12:50:36 +02:00
c0b7b797a2
gnu: perl-compress-raw-bzip2: Update to 2.074.
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* gnu/packages/compression.scm (perl-compress-raw-bzip2): Update to 2.074.
2017-03-22 12:45:55 +02:00
02b067d782
gnu: perl-compress-raw-zlib: Update to 2.074.
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* gnu/packages/compression.scm (perl-compress-raw-zlib): Update to 2.074.
2017-03-22 12:40:05 +02:00
d8be338f16
gnu: openssh: Update to 7.5p1.
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* gnu/packages/ssh.scm (openssh): Update to 7.5p1.
2017-03-22 02:37:31 -04:00
22f25392cf
gnu: ntp: Update to 4.2.8p10 [security fixes].
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Fixes CVE-2016-9042 and CVE-2017-{6451,6452,6455,6458,6459,6460,6462,6463,6464}
and others. See 'NEWS' in the source code for more information.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p10.
2017-03-22 01:41:41 -04:00
8e71896340
gnu: python-psycopg2: Update to 2.6.2.
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* gnu/packages/python.scm (python-psycopg2): Update to 2.6.2.
2017-03-22 02:03:35 +01:00
35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0.
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* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
2017-03-22 02:03:35 +01:00
c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5.
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* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
2017-03-22 02:03:34 +01:00
4c4d4df393
gnu: python-texttable: Update to 0.8.7.
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* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
2017-03-22 02:03:34 +01:00
d5c183d134
gnu: python-feedgenerator: Update to 1.9.
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* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
2017-03-22 02:03:34 +01:00
d25bee2600
gnu: python-wrapt: Update to 1.10.8.
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* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
2017-03-22 02:03:33 +01:00
b9463fdba2
gnu: python-py: Update to 1.4.32.
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* gnu/packages/python.scm (python-py): Update to 1.4.32.
2017-03-22 02:03:33 +01:00
5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0.
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* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
2017-03-22 02:03:33 +01:00
9e59478f8d
gnu: python-wcwidth: Update to 0.1.7.
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* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
2017-03-22 02:03:32 +01:00
4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8.
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* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
2017-03-22 02:03:32 +01:00
2d431b0130
gnu: dns: Return #t instead of something undefined.
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* gnu/packages/dns.scm (yadifa, knot)[arguments]: Return #t after calling
‘substitute*’.
(knot)[source]: Return #t after calling ‘delete-file-recursively’.
2017-03-22 02:03:31 +01:00
7dbd75b3cf
file-systems: Add missing docstring.
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* gnu/system/file-systems.scm (file-system-type-predicate): Add
docstring.
2017-03-21 22:33:07 +01:00
278d486b0c
file-systems: Do not use (gnu packages …).
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Fixes a regression introduced in
7208995426
2017-03-21 22:33:07 +01:00
4f7a9e0bff
gnu: vapoursynth: Update to 37.
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* gnu/packages/video.scm (vapoursynth): Update to 37.
2017-03-21 22:36:33 +02:00
60092c181c
gnu: zimg: Update to 2.5.
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* gnu/packages/image.scm (zimg): Update to 2.5.
2017-03-21 22:35:32 +02:00
049e02eaa2
gnu: libesmtp: Add alternate source URL.
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* gnu/packages/mail.scm (libesmtp)[source]: Add alternate URL.
2017-03-21 16:33:08 -04:00
a9681c74ca
gnu: python-pillow: Fix test failures with freetype-2.7.
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* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
2017-03-21 16:20:10 -04:00
83a3464793
gnu: openblas: Add support for aarch64.
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* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as
substitutable, build for target ARMv8.
2017-03-21 22:03:05 +02:00
36f666c63d
tests: ssh: Add a test for SFTP.
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* gnu/tests/ssh.scm (run-ssh-test): Introduce "SFTP file writing and reading".
Make 'sftp?' a keyword parameter.
(%test-openssh): Pass #:sftp? #t to 'run-ssh-test'.
2017-03-21 20:49:26 +01:00
cfaf4d1165
tests: ssh: Abstract session connection and authentication.
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* gnu/tests/ssh.scm (run-ssh-test): Introduce make-session-for-test,
call-with-connected-session and call-with-connected-session/auth.
(run-ssh-test)["connect"]: Rename to "shell command". Abstract its session
connection and authentication work into the above three functions.
2017-03-21 20:49:26 +01:00
12723370e5
services: openssh: Add 'subsystems' option.
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* gnu/services/ssh.scm (openssh-config-file): Add it.
(<openssh-configuration>)[subsystems]: Add it.
* doc/guix.texi (Networking Services): Document it.
2017-03-21 20:49:26 +01:00
4ca3e9b7b6
services: openssh: Cosmetic changes.
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* gnu/services/ssh.scm (<openssh-configuration>): Reformat to fit in 80
columns.
2017-03-21 20:49:26 +01:00
a42619e5e2
gnu: Add lmms.
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* gnu/packages/music.scm (lmms): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:37:29 -04:00
0b608ec4ce
gnu: Add megaglest.
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* gnu/packages/games.scm (megaglest): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
fb731c9232
gnu: Add megaglest-data.
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* gnu/packages/games.scm (megaglest-data): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
8ea71f2005
gnu: ots: Use 'modify-phases' syntax.
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* gnu/packages/ots.scm (ots)[arguments]: Use 'modify-phases' syntax.
2017-03-21 20:58:52 +02:00
b1d3e0a93b
gnu: ots: Add download mirror.
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* gnu/packages/ots.scm (ots)[source]: Add Debian mirror.
2017-03-21 20:58:51 +02:00
8e4b7b7514
gnu: xf86-video-vmware: Fix build failure due to missing LLVM.
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* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Add llvm.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 14:24:37 -04:00
7fc72c7731
gnu: libcmis: Update to 0.5.1.
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* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.1.
[source]: Use new source URL. Remove obsolete patch
'libcmis-fix-test-onedrive.patch'.
[home-page]: Update URL.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-21 13:38:13 -04:00
a160778cba
gnu: x265: Fix build on aarch64.
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* gnu/packages/video.scm (x265)[arguments]: On aarch64 add a
configure-flag to enable PIC.
2017-03-21 18:01:05 +02:00
4b0e636701
gnu: Adjust asciidoc-related build options.
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Commits 9099a457923078821d13
2017-03-21 11:15:08 -04:00
ed428a58ec
gnu: Add swaks.
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* gnu/packages/mail.scm (swaks): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 15:42:44 +01:00
3411937b15
gnu: git: Update to 2.12.1.
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* gnu/packages/version-control.scm (git): Update to 2.12.1.
2017-03-21 13:45:57 +01:00
6330ece9e3
gnu: Add perl-ole-storage-lite.
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* gnu/packages/perl.scm (perl-ole-storage-lite): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:47 +01:00
2b9d2df799
gnu: Add perl-crypt-rc4.
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* gnu/pakages/perl.scm (perl-crypt-rc4): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:43 +01:00
4b9a5bd990
gnu: kodi: Wrap executable so it finds libcurl.
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* gnu/packages/kodi.scm (kodi)[arguments]: Add 'wrap' phase.
2017-03-21 12:37:41 +01:00
f826c8c7ee
gnu: go@1.4, go@1.7: Skip test that fails with tzdata-2017a.
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* gnu/packages/golang.scm (go-1.4, go-1.7)[arguments]: Disable the test
TestParseInLocation in 'prebuild' phase.
2017-03-21 01:30:39 -04:00
3b4efb1f45
gnu: dtc: Update to 1.4.4.
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* gnu/packages/bootloaders.scm (dtc): Update to 1.4.4.
[source]: Use mirror://kernel.org.
2017-03-21 01:13:06 +01:00
d3d92ec2ba
gnu: greenisland: Update to 0.9.0.1.
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* gnu/packages/display-managers.scm (greenisland): Update to 0.9.0.1.
2017-03-21 01:13:06 +01:00
38190ea5ef
gnu: vim: Update to 8.0.0494.
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* gnu/packages/patches/vim-CVE-2017-5953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0494.
[source]: Remove patch.
(vim-full)[arguments]: Add two phases to drop tests and start xorg.
[native-inputs]: Add XORG-SERVER.
2017-03-20 23:35:39 +01:00
f69e20341f
gnu: kodi: Update to 18.0_alpha-0-b35147e.
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* gnu/packages/kodi.scm (libdvdnav/kodi, libdvdread/kodi, libdvdcss/kodi): New
variables.
(kodi): Update to 18.0_alpha-0-b35147e.
[source]: Download from git. Unbundle more stuff.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flag to disable nonfree components. Rework phases
to patch bundled software and bootstrap more libraries.
[native-inputs]: Remove CMAKE, DOXYGEN, GAWK and WHICH. Add LIBDVDCSS/KODI,
LIBDVDNAV/KODI and LIBDVDREAD/KODI.
[inputs]: Remove BOOST, BZIP2, ENCA, GPERF, JASPER, LIBMODPLUG, LIBSAMPLERATE,
LIBXMU, LIBXT, MESA-UTILS, SDL2 and UNZIP. Add FMT, GIFLIB, LCMS and LIBDRM.
[license]: Update for remaining software bundles.
2017-03-20 23:35:39 +01:00
0a15ee7b63
gnu: Add fmt.
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* gnu/packages/pretty-print.scm (fmt): New variable.
2017-03-20 23:35:39 +01:00
deee8a9dfc
gnu: Remove leftover patch.
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* gnu/packages/patches/openjpeg-use-after-free-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 18:25:02 -04:00
957699ee92
gnu: openjpeg: Remove obsolete patches.
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* gnu/packages/patches/openjpeg-CVE-2016-5157.patch,
gnu/packages/patches/openjpeg-CVE-2016-7163.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg)[source]: Remove them.
2017-03-20 18:24:58 -04:00
4140b86bea
gnu: php: Update to 7.1.3.
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* gnu/packages/php.scm (php): Update to 7.1.3.
2017-03-20 23:09:22 +01:00
bd0c62315b
gnu: bristol: Fix build failure with alsa-lib 1.1.x.
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* gnu/packages/music.scm (bristol)[arguments]: Add build phase to fix build
failure with alsa-lib 1.1.x.
2017-03-20 22:44:26 +01:00
6809d9377b
gnu: ngircd: Use HTTPS.
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* gnu/packages/messaging.scm (ngircd)[source, home-page]: Use HTTPS.
2017-03-20 22:44:06 +01:00
07b7a66526
gnu: ngircd: Use the phrase ‘IRC’ in its description.
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* gnu/packages/messaging.scm (ngircd)[description]: Use ‘IRC’ with @dfn.
2017-03-20 22:44:06 +01:00
341ed63f47
gnu: ngircd: Use ‘modify-phases’ syntax.
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* gnu/packages/messaging.scm (ngircd)[arguments]: Use ‘modify-phases’.
2017-03-20 22:44:06 +01:00
4fd95d9170
gnu: ngircd: Update to 24.
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* gnu/packages/messaging.scm (ngircd): Update to 24.
[source]: Remove upstreamed DNS lookup patch.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 22:44:06 +01:00
500fc65b5b
gnu: znc: Run test suite.
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* gnu/packages/messaging.scm (znc)[arguments]: Enable tests. Add an
‘unpack-googletest’ phase and add ‘--with-gtest=’ to #:configure-flags.
[native-inputs]: Add googletest source.
2017-03-20 22:44:05 +01:00
f0bce02664
gnu: simple-scan: Update to 3.24.0.
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* gnu/packages/gnome.scm (simple-scan): Update to 3.24.0.
2017-03-20 22:44:05 +01:00
e2c4fe7c62
gnu: Add r-cairo.
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* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
94e24d8124
gnu: Add comments on why setting QT_QPA_PLATFORM for tests.
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* gnu/packages/astronomy.scm (stellarium): Add comment.
* gnu/packages/display-managers.scm (greenisland): dito.
* gnu/packages/kde-frameworks.scm (kguiaddons, kwidgetsaddons,
kcompletion, baloo, kbookmarks, kconfigwidgtes, kdesignerplugin,
kemoticons, kglobalaccel, kiconthemes, kio, knewstuff, kparts,
kpeople, krunner, kservice, ktexteditor, ktextwidgets, kxmlgui,
plasma-framework): dito.
* gnu/packages/qt.scm (qtsvg): dito.
2017-03-20 20:56:49 +01:00
4e6509b27f
gnu: mesa: Correct another typo.
...
* gnu/packages/gl.scm (mesa)[arguments]: Fix typo (svrast -> swrast).
2017-03-20 21:44:00 +02:00
0b5d078f8b
gnu: Add freedoom.
...
* gnu/packages/games.scm (freedoom): New variable.
2017-03-20 14:29:44 -04:00
80042ae93d
gnu: wget: Fix test-504 failures.
...
* gnu/packages/wget.scm (wget)[source]: Add patch.
* gnu/packages/patches/wget-fix-504-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-20 20:07:56 +02:00
6f9ba4c91c
gnu: Remove wxwidgets@2.8.
...
* gnu/packages/wxwidgets.scm (wxwidgets@2.8): Remove variable.
2017-03-20 18:33:30 +02:00
36e17ab417
gnu: audacity: Use gtk+@3.
...
* gnu/packages/audacity.scm (audacity)[inputs]: Remove wxwidgets-gtk2,
gtk+@2, add wxwidgets and gtk+.
2017-03-20 18:04:01 +02:00
2314474b01
gnu: wxwidgets: Build with webkitgtk.
...
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove webkitgtk@2.4,
add webkitgtk.
2017-03-20 18:02:41 +02:00
4f9998c66f
gnu: snakemake: Add runtime dependencies.
...
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
2017-03-20 15:13:19 +01:00
0420e89682
gnu: mpd: Update to 0.20.6.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.6.
2017-03-19 21:55:09 -04:00
1a0c4437ab
gnu: Add deutex.
...
gnu/packages/game-development.scm (deutex): New variable.
2017-03-19 21:43:05 -04:00
f75b1400ee
gnu: obnam: Enable tests.
...
* gnu/packages/backup.scm (obnam)[arguments]: Replace 'check' phase with
custom function.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:32 +01:00
315944a393
gnu: Add python-pylint.
...
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
61550dedf3
gnu: Add python2-coverage-test-runner.
...
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
23db3fc67d
gnu: Add python-configparser.
...
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
965a083ed2
gnu: Add python2-backports-functools-lru-cache.
...
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
6ba0af7960
gnu: Add python-isort.
...
* gnu/packages/python.scm (python-isort, python2-isort): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
d5ef113c05
gnu: Add python-astroid.
...
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
6fdbd86d0f
gnu: Add libircclient.
...
* gnu/packages/messaging.scm (libircclient): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 19:18:06 -04:00
f67337e23e
Merge branch 'master' into core-updates
2017-03-19 18:52:12 -04:00
b99eec83b8
gnu: librep: Update to 0.92.6.
...
* gnu/packages/sawfish.scm (librep): Update to 0.92.6.
[arguments]: New field.
[native-inputs]: Add AUTOCONF-WRAPPER, AUTOMAKE, and LIBTOOL.
2017-03-19 23:42:58 +01:00
d5c969ce0c
gnu: lsh: Use libc's argp instead of the bundled one.
...
* gnu/packages/ssh.scm (lsh)[arguments] <#:configure-flags>: Add
--with-system-argp and CPPFLAGS=-DHAVE_ARGP_PARSE.
<#:phases>: In 'pre-configure' phase, modify src/Makefile.in.
2017-03-19 23:42:57 +01:00
5927a843b4
gnu: python-minimal@2: Add dependencies on libffi and zlib.
...
* gnu/packages/python.scm (python2-minimal)[inputs]: Add LIBFFI and ZLIB.
[arguments]: Remove.
2017-03-19 23:42:57 +01:00
4ed0628737
gnu: elogind: Build with gperf 3.0.
...
* gnu/packages/gperf.scm (gperf-3.0): New variable.
* gnu/packages/freedesktop.scm (elogind)[native-inputs]: Use GPERF-3.0
instead of GPERF.
2017-03-19 23:42:57 +01:00
e05fc441cd
gnu: Add pdfgrep.
...
* guix/gnu/packages/pdf.scm (pdfgrep): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 18:30:10 -04:00
4c20b0bcf7
gnu: graphite2: Fix test failure caused by rounding error on 32-bit CPUs.
...
* gnu/packages/patches/graphite2-ffloat-store.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (graphite2): Use it.
2017-03-19 17:32:44 -04:00
8299c697af
gnu: linux-libre: Update to 4.10.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.4.
(%linux-libre-hash): Update hash.
2017-03-19 17:18:15 -04:00
92c42164a2
gnu: linux-libre@4.9: Update to 4.9.16.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.16.
2017-03-19 17:16:38 -04:00
9baf0171a4
gnu: linux-libre@4.4: Update to 4.4.55.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.55.
2017-03-19 17:14:56 -04:00
9970ef6134
services: Remove Tab character from source code whitespace.
...
* gnu/services/base.scm (file-system-shepherd-service): Remove Tab character
from source code whitespace.
2017-03-19 21:36:55 +01:00
fc1bfca253
gnu: u-boot: Update to 2017.03.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.03.
2017-03-19 21:35:17 +01:00
717c659630
gnu: mesa: Fix another typo.
...
This is a followup to commit 2a8b89c27f
2017-03-19 16:05:16 -04:00
6191fef4e0
gnu: icecat: Add selected fixes from upstream mozilla-esr45.
...
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes from
the upstream mozilla-esr45 repository.
2017-03-19 15:55:06 -04:00
512fc6db7b
gnu: libevent@2.0: Add fix from upstream.
...
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.
* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
2017-03-19 15:54:58 -04:00
26e34e1e12
services: file-system-shepherd-service: Make it find the fsck programs.
...
Fixes <https://bugs.gnu.org/25917 >.
* gnu/services/base.scm (file-system-shepherd-service): Use
file-system-packages.
2017-03-19 18:49:30 +01:00
7c86c03109
gnu: guile-commonmark: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-commonmark)[inputs]: Replace GUILE-2.0
with GUILE-2.2.
(guile2.0-commonmark): New variable.
(guile2.2-commonmark): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-COMMONMARK.
2017-03-19 18:14:22 +01:00
bdf1022dec
gnu: guile-reader: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-reader)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.0-reader): New variable.
(guile2.2-reader): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-READER instead of
GUILE2.2-READER.
2017-03-19 18:14:22 +01:00
bd19f65a85
gnu: haunt: Default to Guile 2.2.
...
* gnu/packages/guile.scm (haunt)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
[propagated-inputs]: Replace GUILE-READER and GUILE-COMMONMARK with
their 2.2 variant.
(guile2.0-haunt): New variable.
(guile2.2-haunt): Mark as deprecated.
2017-03-19 18:14:22 +01:00
8f4acad71b
gnu: Add 'package-for-guile-2.0'.
...
* gnu/packages/guile.scm (guile-2.2-package-name): Rename to...
(guile-variant-package-name): ... this. Change to return a lambda.
(package-for-guile-2.2): Adjust accordingly.
(package-for-guile-2.0): New procedure.
2017-03-19 18:14:22 +01:00
f6396d862f
gnu: Rename "guile-next" to "guile".
...
* gnu/packages/guile.scm (guile-next): Rename to...
(guile-2.2): ... this. Update users.
[name]: Change to "guile".
[synopsis]: Remove.
[properties]: Remove 'upstream-name', 'ftp-server', and
'ftp-directory'.
* gnu/packages/bioinformatics.scm (rcas-web): Update accordingly.
* gnu/packages/tls.scm (gnutls/guile-2.2): Likewise.
* tests/guix-build.sh: Use 'guile@2.2' instead of 'guile-next'.
* doc/guix.texi (Package Transformation Options): Update examples that
referred to "guile-next".
2017-03-19 18:14:22 +01:00
8df672aad5
gnu: Add GNU Mach.
...
* gnu/packages/hurd.scm (gnumach): New variable.
Co-authored-by: Rene Saavedra <rennes@openmailbox.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-19 18:14:22 +01:00
f729a4d8b2
gnu: niftilib: Simplify build phases.
...
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
2017-03-19 14:26:33 +01:00
ea50fb8d03
gnu: libepoxy: Add support for aarch64.
...
* gnu/packages/gl.scm (libepoxy)[arguments]: Add substitution to support
aarch64.
2017-03-19 11:13:08 +02:00
3d3d4014c2
gnu: libepoxy: Update to 1.4.1.
...
* gnu/packages/gl.scm (libepoxy): Update to 1.4.1.
[home-page]: Use https.
2017-03-19 10:56:40 +02:00
eba72e1716
gnu: apl: Update to 1.7.
...
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
2017-03-18 21:28:20 +02:00
525acb6e82
gnu: guile-8sync: Update to 0.4.2.
...
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
2017-03-18 12:22:13 -05:00
57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
...
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
prevent problems anymore.
2017-03-18 18:26:11 +01:00
7601b9f7ce
gnu: wine: Update to 2.4.
...
* gnu/packages/wine.scm (wine): Update to 2.4.
2017-03-18 17:26:02 +01:00
21122bd79e
gnu: Add niftilib.
...
* gnu/packages/image.scm (niftilib): New variable.
2017-03-18 15:25:59 +01:00
d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
...
* gnu/packages/irc.scm (limnoria): Update to 20170110.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-18 11:51:21 +01:00
7208995426
file-systems: Factorize file-system-packages.
...
* gnu/system/linux-initrd.scm (base-initrd): Move helper-packages body to ...
* gnu/system/file-systems.scm (file-system-packages): ... here. New variable.
Also export it.
2017-03-18 10:38:51 +01:00
84aac61c81
gnu: rustc: Fix process test.
...
* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests. Add another substitution.
2017-03-18 10:37:02 +01:00
6d5f63b690
gnu: Add maxflow.
...
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
a53d6719bc
gnu: Add itpp.
...
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
b6bd9a79d4
gnu: emacs-slime: Update to 2.19.
...
* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
2017-03-18 01:49:38 +01:00
55f7a27cee
gnu: ocaml-qtest: Update to 2.5.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
2017-03-18 09:52:29 +10:00
7c78beb33c
gnu: libbluray: Update to 1.0.0.
...
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
2017-03-17 20:41:16 +01:00
715dd13d8e
gnu: libx264: Update to 20170316-2245.
...
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
2017-03-17 20:41:15 +01:00
2a047d59e0
gnu: libwebp: Update to 0.6.0.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
cbef2796ed
gnu: ninja: Update to 1.7.2.
...
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
039601e097
gnu: btrfs-progs: Use @dfn in description.
...
* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
2017-03-17 20:39:58 +01:00
0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
2017-03-17 20:39:58 +01:00
893bc3f402
gnu: cargo: Use upstream cargo.
...
* gnu/packages/rust.scm (cargo): Use upstream cargo.
2017-03-17 16:48:08 +01:00
b0dcb529af
gnu: rust: Update to 1.15.0.
...
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
2017-03-17 16:48:06 +01:00
8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool.
...
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
2017-03-17 11:36:27 -04:00
114a325e8f
gnu: Add libpng-apng.
...
* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
2017-03-17 11:25:15 -04:00
0a3063d640
gnu: Add ocaml-mcl.
...
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
91df9eaefa
gnu: Add ocaml-csv.
...
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
2017-03-17 21:43:13 +10:00
0c4dbdc23e
gnu: Add ocaml-sqlite3.
...
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
2017-03-17 21:19:23 +10:00
ef71ed8ffa
gnu: snakemake: Update to 3.11.2.
...
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
2017-03-17 10:14:03 +01:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
54d556bdd7
gnu: youtube-dl: Update to 2017.03.16.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
2017-03-17 03:11:35 +01:00
3078821d13
gnu: asciidoc: Use local docbook-xml package.
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* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
2017-03-16 21:35:50 -04:00
f9cdf1c15b
gnu: Add knot.
...
* gnu/packages/dns.scm (knot): New variable.
2017-03-17 02:32:01 +01:00
754667f0eb
gnu: Add liburcu.
...
* gnu/packages/datastructures.scm (liburcu): New variable.
2017-03-17 02:32:00 +01:00
366efcb2fb
gnu: dns: Fix typo and use @dfn in descriptions.
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* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
2017-03-17 02:32:00 +01:00
2ec5ba859f
gnu: linux-libre: Update to 4.10.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
2017-03-16 19:40:40 -04:00
2044306f05
gnu: linux-libre@4.4: Update to 4.4.54.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
2017-03-16 19:40:39 -04:00
bcc5b74173
gnu: linux-libre@4.9: Update to 4.9.15.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
2017-03-16 19:40:39 -04:00
49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}.
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* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
2017-03-16 19:40:08 -04:00
1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386.
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* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
2017-03-16 19:39:55 -04:00
38c4ca4141
gnu: mesa: Fix typo.
...
The typo caused the configure phase to fail like this:
"configure: error: classic DRI driver '915' does not exist"
This is a followup to commit c5e91014a2
2017-03-16 17:51:56 -04:00
34d60c49cb
services: connman: Rework service.
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* gnu/services/networking.scm (connman-service): Remove.
(<connman-configuration>): New record specifying the package
to be used (connman) and whether vpn plugin shall be
disabled (disable-vpn?).
(connman-configuration): New exported variable.
(connman-configuration?): New exported variable.
(connman-service-type): Export it.
* doc/guix.texi (Networking Services): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-16 22:50:14 +01:00
2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19.
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* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-16 19:58:43 +01:00
2441c28414
gnu: Add r-seurat.
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* gnu/packages/bioinformatics.scm (r-seurat): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-16 14:54:58 +01:00
79849358f8
gnu: sra-tools: Update to 2.8.2-1.
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* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
2017-03-16 13:40:36 +01:00
d5e1716239
gnu: ncbi-vdb: Install configuration files.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
2017-03-16 13:39:53 +01:00
558e23074e
gnu: ncbi-vdb: Override search path for java-ngs.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
2017-03-16 13:38:39 +01:00
4cacd87e4d
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-16 13:11:28 +02:00
701111989e
gnu: ncbi-vdb: Use modify-phases syntax.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
2017-03-16 10:20:56 +01:00
5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
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* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
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* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
56f76b08be
gnu: jack-2: Fix build by patching fast_rand.
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* gnu/packages/audio.scm (jack-2)[arguments]: Add phase "patch-fast_rand" to
apply upstream fixes.
2017-03-16 09:41:20 +01:00
5707ce6e4b
Revert "gnu: bdftopcf: Use libxfont2."
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Building with libxfont2 leads to an error in the configure phase:
"No package 'xfont' found"
This reverts commit 2060b4d95f
2017-03-16 02:06:56 -04:00
0f03c53168
gnu: Add pzstd.
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* gnu/packages/compression.scm (pzstd): New variable.
2017-03-16 05:44:02 +01:00
f6ac3101ff
gnu: Add zstd.
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* gnu/packages/compression.scm (zstd): New variable.
2017-03-16 05:44:02 +01:00
9186216268
gnu: python-publicsuffix2: Update to 2.20160818.
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* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
2017-03-16 05:44:02 +01:00
192b887a03
gnu: awscli: Update to 1.11.63.
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* gnu/packages/python.scm (awscli): Update to 1.11.63.
2017-03-16 05:44:01 +01:00
d93985fe22
gnu: python-botocore: Update to 1.5.26.
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* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
2017-03-16 05:44:01 +01:00
70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1.
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* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
2017-03-16 05:44:01 +01:00
26a657f06a
gnu: Add prboom-plus.
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* gnu/packages/games.scm (prboom-plus): New variable.
2017-03-15 23:14:42 -04:00
5b5cf3c765
gnu: Add tftp-hpa.
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* gnu/packages/networking.scm (tftp-hpa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 18:24:30 -04:00
80a725726d
gnu: guile-next: Update to 2.2.0.
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* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
2017-03-15 22:59:40 +01:00
dce8ac54b4
gnu: profanity: Make the source URL version-agnostic.
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* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
2017-03-15 17:20:27 -04:00
cf8d068775
gnu: units: Update to 2.14.
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* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
3d602acb13
gnu: no-more-secrets: Update to 0.3.2.
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* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
2017-03-15 22:19:40 +01:00
7ea523853c
gnu: mailutils: Update to 3.2.
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* gnu/packages/mail.scm (mailutils): Update to 3.2.
2017-03-15 22:19:40 +01:00
f38607536e
gnu: Use INSTALL-FILE where appropriate.
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* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
2017-03-15 22:19:39 +01:00
618e4bfbad
gnu: cryptsetup: Update to 1.7.4.
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* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
2017-03-15 22:19:39 +01:00
4e128dd582
gnu: man-pages: Update to 4.10.
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* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
2017-03-15 22:19:38 +01:00
a829c6501b
gnu: Add profanity.
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* gnu/packages/messaging.scm (profanity): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
781d3b070c
gnu: Add libstrophe.
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* gnu/packages/messaging.scm (libstrophe): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
13292ee570
gnu: Add libmesode.
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* gnu/packages/messaging.scm (libmesode): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
9e61d1534a
gnu: bitcoin-core: Update to 0.14.0.
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* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
2017-03-15 15:48:43 -04:00
b8f99f4ae3
gnu: nss, nss-certs: Update to 3.29.3.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-15 17:57:51 +01:00
d027b0011f
gnu: nss: Increase test timeouts.
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* gnu/packages/patches/nss-increase-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (nss)[source]: Use it.
2017-03-15 17:56:05 +01:00
1461dd2410
Revert "Revert "gnu: nss: Build for aarch64-linux with 64-bit support.""
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This reverts commit adb984d23c
2017-03-15 17:53:27 +01:00
db3c06d511
gnu: nss: Use 'modify-phases' syntax.
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* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-15 17:53:24 +01:00
4b7e5c1131
Merge branch 'master' into core-updates
2017-03-15 17:52:26 +01:00
adb984d23c
Revert "gnu: nss: Build for aarch64-linux with 64-bit support."
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Temporary revert to fix messy merge conflict!
This reverts commit 568004c3c9
2017-03-15 17:51:23 +01:00
bd102157a1
gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].
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* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
2017-03-15 15:08:31 +01:00
378640ec37
gnu: qemu-minimal: Add aarch64 to target list.
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* gnu/packages/qemu.scm (qemu-minimal)[arguments]: Add 'aarch64-softmmu'
to the target list.
2017-03-15 15:58:02 +02:00
27bf00e691
gnu: python-waf: Update to 1.9.8.
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* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
2017-03-15 13:08:56 +02:00
283234a309
gnu: direnv: Update to 2.11.3.
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* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
2017-03-15 03:45:57 +01:00
68c10f31f9
gnu: conky: Update to 1.10.6.
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* gnu/packages/conky.scm (conky): Update to 1.10.6.
2017-03-15 03:45:56 +01:00
708e76287c
gnu: obs: Update to 18.0.1.
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* gnu/packages/video.scm (obs): Update to 18.0.1.
2017-03-15 03:45:56 +01:00
17753e6edb
gnu: youtube-dl: Update to 2017.03.15.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
2017-03-15 03:45:55 +01:00
a988cbb766
gnu: stress-make: Fix description.
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* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
2017-03-15 03:45:55 +01:00
d540156c69
gnu: znc: Update to 1.6.5.
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* gnu/packages/messaging.scm (znc): Update to 1.6.5.
2017-03-15 03:43:21 +01:00
6d57723ac8
gnu: grue-hunter: Correctly install documentation.
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* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
2017-03-15 01:10:31 +01:00
b2d748edff
gnu: samtools: End installation phases with truth.
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* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
2017-03-15 01:10:30 +01:00
35dcfed370
gnu: w3m: Update to 0.5.3+git20170102 [security fixes].
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See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
2017-03-14 18:26:28 -04:00
2eab5db300
Revert "gnu: gitolite: Fix shebangs in hooks."
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This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28 >
This reverts commit d0c16adb19
2017-03-14 18:26:28 -04:00
796d2f2d0b
Revert "gnu: nss: Use 'modify-phases' syntax."
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This reverts commit 87f1c7efc1
2017-03-14 22:29:18 +01:00
031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3."
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Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html .
This reverts commit 4f3dcdd99b
2017-03-14 22:26:18 +01:00
edda7ebec1
gnu: Add ocaml-ppx-typerep-conv.
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* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
2017-03-14 22:09:56 +01:00
d2203187fe
gnu: Add ocaml-ppx-let.
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* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
2017-03-14 22:09:50 +01:00
250ac438e7
gnu: Add ocaml-ppx-enumerate.
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* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
2017-03-14 22:09:48 +01:00
Ludovic Courtès