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Author SHA1 Message Date
Ricardo Wurmus e89e4bb634
gnu: r-mime: Update to 0.7. 
* gnu/packages/statistics.scm (r-mime): Update to 0.7.
 2019-06-17 04:54:32 +02:00
Ricardo Wurmus 24868ae72e
gnu: r-formatr: Update to 1.7. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.7.
 2019-06-17 04:54:27 +02:00
Ricardo Wurmus 4661effbd5
gnu: r-ggplot2: Update to 3.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0.
[propagated-inputs]: Remove r-plyr.
 2019-06-17 04:54:11 +02:00
Ricardo Wurmus 18242e4b52
gnu: r-servr: Update to 0.14. 
* gnu/packages/cran.scm (r-servr): Update to 0.14.
 2019-06-17 04:54:05 +02:00
Ricardo Wurmus 9fea25cf32
gnu: r-polspline: Update to 1.1.15. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.15.
 2019-06-17 04:54:00 +02:00
Ricardo Wurmus 663a50e8f9
gnu: r-deldir: Update to 0.1-21. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-21.
 2019-06-17 04:53:55 +02:00
Ricardo Wurmus 776c62d1b2
gnu: r-nor1mix: Update to 1.3-0. 
* gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0.
 2019-06-17 04:53:51 +02:00
Ricardo Wurmus 5cc896546b
gnu: r-tractor-base: Update to 3.3.2. 
* gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2.
 2019-06-17 04:53:47 +02:00
Ricardo Wurmus 935c6532ac
gnu: r-rspectra: Update to 0.15-0. 
* gnu/packages/cran.scm (r-rspectra): Update to 0.15-0.
 2019-06-17 04:53:42 +02:00
Ricardo Wurmus a7794b7243
gnu: r-emmeans: Update to 1.3.5. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.
 2019-06-17 04:53:37 +02:00
Ricardo Wurmus 89afd03172
gnu: r-abcrf: Update to 1.8. 
* gnu/packages/cran.scm (r-abcrf): Update to 1.8.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2019-06-17 04:53:20 +02:00
Ricardo Wurmus 45dcc89de7
gnu: r-sjmisc: Update to 2.8.0. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0.
[propagated-inputs]: Remove r-haven; add r-insight.
 2019-06-17 04:53:04 +02:00
Ricardo Wurmus e0cd8f7340
gnu: r-extradistr: Update to 1.8.11. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.11.
 2019-06-17 04:52:57 +02:00
Ricardo Wurmus bb6c8f207b
gnu: guile-gi: Update to 0.0.2. 
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2.
[source]: Fetch using url-fetch.
[arguments]: Add make flags to remove unexpectedly passing test from
XFAIL_TESTS.
[native-inputs]: Remove autoconf, automake, and texinfo.
 2019-06-17 04:52:22 +02:00
Ricardo Wurmus d1a3a8e15e
gnu: guile-picture-language: Update to 0.0.1-1-91d10c9. 
* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-1-91d10c9.
[build-system]: Use gnu-build-system.
[native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo.
 2019-06-17 03:06:53 +02:00
Tobias Geerinckx-Rice 58637415be
gnu: youtube-viewer: Refer to youtube-dl. 
* gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl.
[arguments]: Add ‘refer-to-inputs’ phase.
 2019-06-17 03:04:31 +02:00
Tobias Geerinckx-Rice a157fb2723
gnu: radare2: Download over HTTPS. 
* gnu/packages/engineering.scm (radare2)[source]: Use HTTPS.
 2019-06-17 03:04:31 +02:00
Tobias Geerinckx-Rice e605820bc5
gnu: radare2: Don't use NAME in source URI. 
* gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME.
 2019-06-17 03:04:30 +02:00
Tobias Geerinckx-Rice 935e4b3abd
gnu: nsd: Update to 4.2.0. 
* gnu/packages/dns.scm (nsd): Update to 4.2.0.
 2019-06-17 03:04:30 +02:00
Tobias Geerinckx-Rice 3abc9cc242
gnu: knot: Update to 2.8.2. 
* gnu/packages/dns.scm (knot): Update to 2.8.2.
 2019-06-17 03:04:30 +02:00
Tobias Geerinckx-Rice 8fadac9577
gnu: suil: Update to 0.10.4. 
* gnu/packages/audio.scm (suil): Update to 0.10.4.
 2019-06-17 03:04:30 +02:00
Jesse Gibbons 562a2a4095
gnu: Add freeorion 
* gnu/packages/games.scm (freeorion): New variable.
 2019-06-16 21:40:09 +02:00
Tobias Geerinckx-Rice 914bba2809
gnu: docker-compose: Add required Python dependencies. 
* gnu/packages/python-xyz.scm (python-jsonschema-2.6):
New old public variable.
* gnu/packages/docker.scm (docker-compose)[inputs]:
Add python-docker-pycreds and use python-jsonschema-2.6.
 2019-06-16 19:44:42 +02:00
Tobias Geerinckx-Rice 10a3297389
gnu: dstat: Add two patches, fix two bugs. 
* gnu/packages/admin.scm (dstat)[source]: Add patches.
* gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch,
gnu/packages/patches/dstat-skip-devices-without-io.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-06-16 19:44:42 +02:00
Tobias Geerinckx-Rice fa67073f13
gnu: dstat: Fix Python 3 deprecation warning. 
* gnu/packages/admin.scm (dstat)[arguments]:
Add ‘fix-python3-DeprecationWarning’ phase.
 2019-06-16 19:44:42 +02:00
Tobias Geerinckx-Rice 4fce1ff129
gnu: Add font-anonymous-pro-minus. 
* gnu/packages/fonts.scm (font-anonymous-pro-minus): New public variable.
 2019-06-16 19:44:42 +02:00
Efraim Flashner 8bae6c744c
gnu: keepassxc: Update to 2.4.3. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.3.
 2019-06-16 14:26:45 +03:00
Mark H Weaver 86c05c4465
gnu: linux-libre: Update to 5.1.10. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.10.
(%linux-libre-hash): Update hash.
 2019-06-16 04:11:07 -04:00
Mark H Weaver fc6290fb1f
gnu: linux-libre@4.19: Update to 4.19.51. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.51.
(%linux-libre-4.19-hash): Update hash.
 2019-06-16 04:09:12 -04:00
Mark H Weaver 466595eeb2
gnu: linux-libre@4.14: Update to 4.14.126. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.126.
(%linux-libre-4.14-hash): Update hash.
 2019-06-16 04:08:06 -04:00
Gábor Boskovits 7a1d6a7708
gnu: Add waybar. 
* gnu/packages/wm.scm(waybar): New variable.
 2019-06-16 00:29:00 +02:00
Gábor Boskovits 121d9d1a7a
gnu: Add spdlog. 
* gnu/packages/logging.scm(spdlod): New variable.
 2019-06-15 21:50:49 +02:00
Florian Pelz 7dbeb5a791
services: Include USB_ModeSwitch in %desktop-services. 
Fixes <https://bugs.gnu.org/35640>.

* gnu/services/desktop.scm (%desktop-services): Add usb-modeswitch-service-type.
* doc/guix.texi (Networking Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-15 18:37:57 +02:00
Florian Pelz f5be51040c
services: Add usb-modeswitch-service-type. 
* gnu/services/networking.scm (usb-modeswitch-service-type): New variable.
(usb-modeswitch-configuration): New variable.
(usb-modeswitch-sh): New procedure.
(usb-modeswitch-configuration->udev-rules): New procedure.
* doc/guix.texi (Networking Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-15 18:37:54 +02:00
Ludovic Courtès 494a8cd03a
gnu: units: Update to 2.19. 
* gnu/packages/maths.scm (units): Update to 2.19.
 2019-06-15 18:29:58 +02:00
Ludovic Courtès a59902ff11
gnu: rush: Update to 1.9. 
* gnu/packages/rush.scm (rush): Update to 1.9.
 2019-06-15 18:29:45 +02:00
Ludovic Courtès 25cb591ce4
gnu: wget: Update to 1.20.3. 
* gnu/packages/wget.scm (wget): Update to 1.20.3.
 2019-06-15 18:29:31 +02:00
Ludovic Courtès 02dad49d42
gnu: gengetopt: Update to 2.23. 
* gnu/packages/popt.scm (gengetopt): Update to 2.23.
[native-inputs]: New field.
 2019-06-15 18:28:13 +02:00
Ludovic Courtès d2de780272
gnu: dico: Update to 2.9. 
* gnu/packages/dico.scm (dico): Update to 2.9.
 2019-06-15 18:24:52 +02:00
Ludovic Courtès b3f02caeec
gnu: libmicrohttpd: Update to 0.9.64. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.64.
 2019-06-15 18:23:38 +02:00
Ludovic Courtès f3d7970053
services: Remove unneeded imports that led to cycles. 
Fixes <https://bugs.gnu.org/36207>.
Reported by Jack Hill <jackhill@jackhill.us>.

* gnu/services/admin.scm: Remove unneeded import of (gnu services
base).
* gnu/services/mcron.scm: Likewise.
 2019-06-15 18:15:23 +02:00
Meiyo Peng ddd401d28f
gnu: swayidle: Add elogind support. 
* gnu/packages/wm.scm (swayidle)[arguments]: Add #:configure-flags.
  [inputs]: Add elogind.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-06-15 14:43:34 +02:00
Pierre Neidhardt 24087364f5
gnu: emacs-desktop-environment: Update to 0.2.2. 
* gnu/packages/emacs-xyz.scm (emacs-desktop-environment): Update to 0.2.2.
 2019-06-15 13:44:57 +02:00
Marius Bakke a60dbad3bc
Merge branch 'staging' 2019-06-15 09:46:12 +02:00
Marius Bakke c7fbf61865
gnu: Remove leftover patch. 
This is a follow-up to commit d680a8afd1.

* gnu/packages/patches/inkscape-poppler-compat3.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-06-15 09:42:12 +02:00
Gábor Boskovits 4c7e8c234d
gnu: Add benchmark. 
* gnu/packages/benchmark.scm(benchmark): New variable.
* gnu/packages/patches/benchmark-unbundle-googletest.patch: New file.
* gnu/local.mk(dist_patch_DATA): Add it.
 2019-06-14 23:18:12 +02:00
Ricardo Wurmus bc70516bba
gnu: Remove r-loomr. 
The loomR package is actually non-free software according to its author.  See
https://github.com/mojaveazure/loomR/pull/24.

* gnu/packages/bioinformatics.scm (r-loomr): Remove variable.
 2019-06-14 17:32:04 +02:00
Meiyo Peng e23b6a6800
gnu: sway: Hardcode path to swaybg. 
* gnu/packages/wm.scm (sway)[arguments]: Hardcode path to swaybg.
  [inputs]: Add swaybg.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-06-14 14:06:06 +02:00
Marius Bakke 71bfbe9ba8
gnu: whois: Update to 5.4.3. 
* gnu/packages/networking.scm (whois): Update to 5.4.3.
 2019-06-14 14:06:06 +02:00
Marius Bakke 54200da4b3
gnu: ungoogled-chromium: Update to 75.0.3770.90-0.5d8abc3 [fixes CVE-2019-5842]. 
* gnu/packages/chromium.scm (%chromium-version): Update to 75.0.3770.90.
(%debian-revision): Update to 'debian/75.0.3770.90-1'.
(%chromium-origin): Update hashes.
 2019-06-14 14:05:47 +02:00
Ludovic Courtès 30825c4629
gnu: emacs-org-noter: Tweak. 
* gnu/packages/emacs-xyz.scm (emacs-org-noter): Adjust indentation and
description.
 2019-06-13 23:27:34 +02:00
Dimakakos Dimos 576cb396ea
gnu: Add emacs-org-noter 
* gnu/packages/emacs-xyz.scm (emacs-org-noter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 23:23:28 +02:00
Alex Griffin 1aa2c25560
gnu: ikiwiki: Update to 3.20190228. 
* gnu/packages/web.scm (ikiwiki): Update to 3.20190228.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 23:06:45 +02:00
Alex Griffin 1682368932
gnu: perl-yaml-libyaml: Update to 0.78. 
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.78.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 23:06:45 +02:00
Alex Griffin 15f836efc1
gnu: perl-canary-stability: Update to 2013. 
* gnu/packages/perl.scm (perl-canary-stability): Update to 2013.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 23:06:45 +02:00
Alex Griffin a3abc3fdfc
gnu: perl-db-file: Update to 1.852. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.852.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 23:06:44 +02:00
Alex Griffin 6bb5a7e08c
gnu: Add emacs-solaire-mode. 
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-13 23:40:06 +03:00
Alex Griffin 4df1d31b54
gnu: Add emacs-mixed-pitch. 
* gnu/packages/emacs-xyz.scm (emacs-mixed-pitch): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-13 23:40:05 +03:00
Alex Griffin fdcd50b93b
gnu: Add emacs-restart-emacs. 
* gnu/packages/emacs-xyz.scm (emacs-restart-emacs): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-13 23:40:05 +03:00
Alex Griffin 9989e06fda
gnu: Add emacs-elfeed-org. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-org): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-13 23:40:05 +03:00
Oleg Pykhalov c56a65aae7
gnu: Add emacs-xtest. 
* gnu/packages/emacs-xyz.scm (emacs-xtest): New variable.
 2019-06-13 23:40:05 +03:00
Efraim Flashner 9062fde4c6
gnu: parcimonie: Update source and home-page. 
* gnu/packages/gnupg.scm (parcimonie)[source]: Update to new url.
[home-page]: Same.
 2019-06-13 20:43:20 +03:00
Robert Vollmert ed8d3f33a5
build-system/haskell: Generate Setup.hs if needed. 
The default Setup.hs is boilerplate that is frequently left out of
source packages.  Several packages already add a phase to generate it,
so moving this phase to the build system is just factoring out an
existing pattern.

See <https://github.com/phadej/time-compat/issues/4>.

* guix/build/haskell-build-system.scm (generate-setuphs): New procedure.
(%standard-phases): Add it after 'unpack'.
* gnu/packages/haskell.scm (ghc-foundation, ghc-inline-c,
ghc-inline-c-cpp, ghc-rio): Remove 'arguments'.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
 2019-06-13 13:30:24 -04:00
Marius Bakke f388f4a568
Merge branch 'staging' 2019-06-13 15:27:30 +02:00
Marius Bakke 2a9d89afb6
gnu: gstreamer: Skip failing test on 32-bit systems. 
* gnu/packages/gstreamer.scm (gstreamer)[arguments]: When building for a
32-bit system, add #:phases.
 2019-06-13 14:08:32 +02:00
Nicolas Goaziou 3745909dc9
gnu: Add ri-li. 
* gnu/packages/games.scm (ri-li): New variable.
* gnu/packages/patches/ri-li-modernize_cpp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-06-13 13:59:58 +02:00
Carlo Zancanaro 47f2168b6f
gnu: Add Kawa. 
* gnu/packages/kawa.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-06-13 13:00:37 +02:00
Ludovic Courtès 0ddf17dc1a
gnu; emacs-realgud: Add a 'file-name' field to the origin. 
* gnu/packages/emacs-xyz.scm (emacs-realgud)[source]: Add 'file-name'.
 2019-06-13 13:00:37 +02:00
Brian Leung 0882c491f0
gnu: emacs-realgud: Update to 1.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-realgud): Update to 1.5.0.
[source]: Fetch from git.
Remove upstreamed patch.
* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 13:00:37 +02:00
Ludovic Courtès ed8a551653
gnu: gpxsee: Fetch from Git instead of a generated tarball. 
* gnu/packages/gps.scm (gpxsee)[source]: Use 'git-fetch'.
 2019-06-13 13:00:37 +02:00
Nikolay Korotkiy 286ef5d97c
gnu: gpxsee: Upgrade to 7.8 
* gnu/packages/gps.scm (gpxsee): Update to 7.8.
[arguments]: Leave "config.h" unchanged in 'configure' phase.
Remove 'install' phase.
[home-page, synopsis, description]: Update.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 13:00:37 +02:00
Ludovic Courtès b801646727
gnu: nyacc: Add 0.94.0. 
* gnu/packages/mes.scm (nyacc): Rename to...
(nyacc-0.86): ... this.
(nyacc): New variable.
(mes)[propagated-inputs]: Use NYACC-0.86 instead of NYACC.
 2019-06-13 13:00:36 +02:00
Nicolas Goaziou 4d6d2d7cca
gnu: gimp: Update to 2.10.12. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.12.
 2019-06-13 12:52:55 +02:00
Nicolas Goaziou 42b641b7d8
gnu: babl: Update to 0.1.66. 
* gnu/packages/gimp.scm (babl): Update to 0.1.66.
 2019-06-13 12:52:40 +02:00
LaFreniere, Joseph aa86c3adbd
gnu: emacs-perspective: Update to 2.2. 
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.2.
[source]: Download using git-fetch.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-06-13 10:46:24 +03:00
Efraim Flashner e22edabbb5
gnu: gpodder: Only return #t when needed. 
* gnu/packages/gpodder.scm (gpodder)[arguments]: Return #t from
'do-not-run-msgmerge. Don't return #t from 'install.
 2019-06-13 09:35:08 +03:00
Pierre Langlois 2bb078efe5
gnu: gpodder: Update to 3.10.9. 
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.9.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-06-13 09:29:27 +03:00
Tobias Geerinckx-Rice 5cc5364eba
gnu: dstat: Add python2-six. 
* gnu/packages/admin.scm (dstat)[inputs]: Add python2-six.
[arguments]: Add ‘wrap’ phase to make dstat find required modules.
 2019-06-13 02:26:21 +02:00
Florian Pelz bd9b15fb31
gnu: Add USB_ModeSwitch. 
* gnu/packages/usb-modeswitch.scm: New file.
* gnu/packages/patches/usb-modeswitch-accept-config-arg.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add package.
  (dist_patch_DATA): Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 00:44:01 +02:00
Jan Nieuwenhuizen f0de9544a3
gnu: Add emacsy. 
* gnu/packages/guile-xyz.scm (emacsy): New variable.
 2019-06-12 23:31:43 +02:00
Leo Famulari ff22ff42a1
gnu: GParted: Update 1.0.0. 
* gnu/packages/disk.scm (gparted): Update to 1.0.0.
[arguments]: Remove obsolete configure flag.
[inputs]: Use gtkmm@3. Add yelp-tools and itstool. Remove libxslt,
gnome-doc-utils, docbook-xml-4.2, python-2, python2-libxml2, and which.
[native-inputs]: Add lvm2.
 2019-06-12 15:46:53 -04:00
Mark H Weaver ac72162efd
gnu: linux-libre: Update to 5.1.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.9.
(%linux-libre-hash): Update hash.
 2019-06-12 13:05:09 -04:00
Mark H Weaver 6a2d0191c6
gnu: linux-libre@4.19: Update to 4.19.50. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.50.
(%linux-libre-4.19-hash): Update hash.
 2019-06-12 13:03:53 -04:00
Mark H Weaver 7ef05bcf4b
gnu: linux-libre@4.14: Update to 4.14.125. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.125.
(%linux-libre-4.14-hash): Update hash.
 2019-06-12 13:01:12 -04:00
Mark H Weaver 07b7a45a49
gnu: linux-libre@4.9: Update to 4.9.181. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.181.
 2019-06-12 13:00:33 -04:00
Mark H Weaver a542521a70
gnu: linux-libre@4.4: Update to 4.4.181. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.181.
 2019-06-12 12:59:50 -04:00
Christopher Baines 2916deb91b
gnu: perl-io-socket-ssl: Update to 2.066. 
The previous version failed to build, but this updated version does build
successfully.

* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.066.
 2019-06-12 17:49:23 +01:00
Julien Lepiller 24d32e67db
gnu: Add python-pynvim. 
* gnu/packages/vim.scm (python-pynvim, python2-pynvim): New variables.
 2019-06-12 18:48:15 +02:00
Tobias Geerinckx-Rice 79d19d7d90
services: Import (srfi srfi-26) from the build side. 
See <https://lists.gnu.org/archive/html/guix-devel/2019-06/msg00119.html>.

* gnu/services/nix.scm (nix-activation): Remove (srfi srfi-26) from (host-)
imported modules.
 2019-06-12 17:26:28 +02:00
Ricardo Wurmus 798b80cea2
gnu: Add r-txdb-hsapiens-ucsc-hg38-knowngene. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): New variable.
 2019-06-12 16:23:44 +02:00
Marius Bakke 136eeb0b49
gnu: ungoogled-chromium: Update to 75.0.3770.80-0.5d8abc3. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Update for 75.
(%chromium-version): Update to 75.0.3770.80.
(%ungoogled-revision): Update to 5d8abc38b43a62f379615a0dc972b29d9aebb4b4.
(%debian-revision): Update to debian/75.0.3770.80-1.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(ungoogled-chromium-source): Include Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "enable_vr=false" to #:configure-flags.
 2019-06-12 13:29:45 +02:00
Marius Bakke d0804ea0c6
gnu: chromium: Move origins into separate variables. 
* gnu/packages/chromium.scm (%chromium-origin, %ungoogled-origin,
%debian-origin): New variables.
(ungoogled-chromium-source): Adjust accordingly.
 2019-06-12 13:29:35 +02:00
Ricardo Wurmus 6054c823ae
gnu: pigx-rnaseq: Update to 0.0.6. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.6.
[inputs]: Remove bedtools.
 2019-06-12 13:12:00 +02:00
Efraim Flashner e38731138d
gnu: wget.scm: List inputs alphabetically. 
* gnu/packages/wget.scm: List inputs alphabetically.
 2019-06-12 12:58:34 +03:00
Efraim Flashner d7397187df
gnu: wget: Change default paste site. 
* gnu/packages/wget.scm (wgetpaste)[arguments]: Change default paste
site in custom 'remove-dead-paste-site phase.
 2019-06-12 12:58:33 +03:00
Efraim Flashner 08b00d384b
gnu: wgetpaste: Add xclip to wrapper program list. 
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add xclip to list of
wrapper programs in custom 'wrap-program phase.
[inputs]: Add xclip.
 2019-06-12 12:58:33 +03:00
Ricardo Wurmus ae6fa185af
gnu: Add r-annotatr. 
* gnu/packages/bioconductor.scm (r-annotatr): New variable.
 2019-06-12 11:07:37 +02:00
Ivan Petkov 2444abd9c1
gnu: crate: Add proc-macro2 and quote. 
* gnu/packages/crates-io.scm: (rust-proc-macro2): New variable.
(rust-quote): New variable.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Ivan Petkov cb2471f726
gnu: crate: Add unicode-xid. 
* gnu/local.mk: (GNU_SYSTEM_MODULES): Add packages/crates-io.scm.
* gnu/packages/crates-io.scm: New file, containing unicode-xid.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
 2019-06-11 18:05:44 -07:00
Amar Singh a38525789c
gnu: Add emacs-shroud. 
* gnu/packages/emacs-xyz.scm (emacs-shroud): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-11 22:35:26 +02:00
Tobias Geerinckx-Rice 2be6b5e2ee
services: Add SRFI-26 to Nix activation gexp. 
Fix the following fatal error on ‘guix system reconfigure’:

Backtrace:
          18 (primitive-load "/home/nckx/.config/guix/current/bin/guix")
In guix/ui.scm:
  1620:12 17 (run-guix-command _ . _)
In ice-9/boot-9.scm:
    829:9 16 (catch _ _ #<procedure 7a7caa2d4c80 at guix/ui.scm:587:2 (key c)> _)
    829:9 15 (catch _ _ #<procedure 7a7caa2d4c98 at guix/ui.scm:710:6 (key proc format-string format-args . …> …)
In guix/scripts/system.scm:
   1325:8 14 (_)
In guix/status.scm:
    768:4 13 (call-with-status-report _ _)
In guix/scripts/system.scm:
   1181:4 12 (process-action _ _ _)
In guix/store.scm:
   623:10 11 (call-with-store _)
  1800:24 10 (run-with-store _ _ #:guile-for-build _ #:system _ #:target _)
In guix/scripts/system.scm:
   920:13  9 (_ _)
    409:8  8 (_ _)
In unknown file:
           7 (primitive-load "/gnu/store/dha7j9gcz3vgb8cy7vfvvaswwsywrrzj-activate")
In ice-9/boot-9.scm:
   260:13  6 (for-each #<procedure primitive-load (_)> _)
In unknown file:
           5 (primitive-load "/gnu/store/ql1xjxrssxm51z2bn2v6l3mlrncij84h-activate-service")
In ice-9/eval.scm:
    619:8  4 (_ #f)
   196:35  3 (_ #f)
   196:27  2 (_ #f)
   223:20  1 (proc #<directory (guile-user) 1fa4140>)
In unknown file:
           0 (%resolve-variable (7 . cut) #<directory (guile-user) 1fa4140>)

ERROR: In procedure %resolve-variable:
error: cut: unbound variable

Reported-by: Alex McGrath on #guix.

* gnu/services/nix.scm (nix-activation): Import and use (srfi srfi-26).
 2019-06-11 21:05:32 +02:00
Christopher Lemmer Webber 948ecc27dd
gnu: racket: Update to 7.3. 
* gnu/packages/scheme.scm (racket): Update to 7.3.
* gnu/packages/patches/racket-store-checksum-override.patch: Update for Racket
  7.3.
 2019-06-11 13:45:27 -04:00
Ricardo Wurmus 944cb87a33
gnu: Add r-psiplot. 
* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
 2019-06-11 13:39:50 +02:00
Marius Bakke 58bf51b4c0
Merge branch 'master' into staging 2019-06-11 10:27:09 +02:00
Marius Bakke bf3005346e
gnu: tbb: Update to 2019_U8. 
* gnu/packages/tbb.scm (tbb): Update to 2019_U8.
 2019-06-11 09:31:24 +02:00
Marius Bakke 6c98d9c7fc
gnu: offlineimap: Update to 7.2.4. 
* gnu/packages/mail.scm (offlineimap): Update to 7.2.4.
 2019-06-11 09:31:24 +02:00
Rutger Helling 80166beca2
gnu: wine-staging: Update to 4.10. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.10.
* gnu/packages/wine.scm (wine-staging): Update to 4.10.
 2019-06-11 08:28:02 +02:00
Rutger Helling 0debb9ac7e
gnu: faudio: Update to 19.06.07. 
* gnu/packages/audio.scm (faudio): Update to 19.06.07.
 2019-06-11 08:28:01 +02:00
Rutger Helling b6c31f0e50
gnu: kitty: Update to 0.14.2. 
* gnu/packages/terminals.scm (kitty): Update to 0.14.2.
 2019-06-11 08:28:01 +02:00
Tobias Geerinckx-Rice 501d4b335a
gnu: grim: Update to 1.2.0. 
* gnu/packages/image.scm (grim): Update to 1.2.0.
 2019-06-10 23:53:05 +02:00
Tobias Geerinckx-Rice 7d5113e50e
gnu: slurp: Update to 1.2.0. 
* gnu/packages/image.scm (slurp): Update to 1.2.0.
 2019-06-10 23:53:05 +02:00
Diego Nicola Barbato 2f9f792a1e
services: slim: Update SLiM theme to 1.x. 
* gnu/services/xorg.scm (%default-slim-theme-name): Change to "1.x".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-10 23:11:15 +02:00
Diego Nicola Barbato 226a3605d6
artwork: Update snapshot to 2f2fe74. 
* gnu/artwork.scm (%artwork-repository): Update to 2f2fe74.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-10 23:11:07 +02:00
Ricardo Wurmus 075a90946b
gnu: Add r-biosigner. 
* gnu/packages/bioconductor.scm (r-biosigner): New variable.
 2019-06-10 13:41:48 +02:00
Ricardo Wurmus a9fac3f4d3
gnu: Add r-ropls. 
* gnu/packages/bioconductor.scm (r-ropls): New variable.
 2019-06-10 13:41:45 +02:00
Christopher Baines 4252dace19
services: guix-publish: Configure log rotation. 
* gnu/services/base.scm (%guix-publish-log-rotations): New variable.
(guix-publish-service-type): Extend the rottlog-service-type.
 2019-06-10 07:58:09 +01:00
Christopher Baines b09793172f
services: guix-publish: Log to a file. 
This makes it easier to read the output, as it's recorded in a file.

* gnu/services/base.scm (guix-publish-shepherd-service): Add #:log-file to
make-forkexec-constructor.
 2019-06-10 07:58:06 +01:00
Oleg Pykhalov 47b9614b31
services: Add 'nix-service-type'. 
* gnu/services/nix.scm: New file.
* gnu/local.mk: Add this.
* doc/guix.texi (Miscellaneous Services): Document this.
 2019-06-10 09:15:45 +03:00
Mark H Weaver 31775e400e
gnu: linux-libre: Update to 5.1.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.8.
(%linux-libre-hash): Update hash.
 2019-06-10 01:52:15 -04:00
Mark H Weaver 84b3d9dd93
gnu: linux-libre@4.19: Update to 4.19.49. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.49.
(%linux-libre-4.19-hash): Update hash.
 2019-06-10 01:51:08 -04:00
Mark H Weaver 5d293300f8
gnu: linux-libre@4.15: Remove package. 
This release series is no longer supported upstream.

* gnu/packages/linux.scm (%linux-libre-4.15-version)
(%linux-libre-4.15-hash, linux-libre-4.15)
(linux-libre-headers-4.15): Remove variables.
 2019-06-10 01:48:01 -04:00
Mark H Weaver ff5355f58e
gnu: linux-libre@4.14: Update to 4.14.124. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.124.
(%linux-libre-4.14-hash): Update hash.
 2019-06-10 01:45:26 -04:00
Eric Bavier ac30257600
gnu: emacs-idris-mode: Use recent git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-idris-mode)[source]: Use git-fetch.
[version]: Include revision and commit.
 2019-06-09 23:18:16 -05:00
Jack Hill 535a69e9e5
gnu: recutils: Remove emacs-minimal native input. 
* gnu/packages/databases.scm (recutils)[native-inputs]: Remove emacs-minimal.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:48 +03:00
Jack Hill 9df786752e
gnu: Add emacs-recutils. 
* gnu/packages/databases.scm (emacs-recutils): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:45 +03:00
Tobias Geerinckx-Rice c447eb4d1d
gnu: Restore allegro-mesa-18.2.5-and-later.patch. 
Dropped in 49405aaf5c, it's still in use
by the (leaf) allegro-5.0 package.

* gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch: Newish file.
* gnu/local.mk (dist_patch_DATA): Re-add it.
 2019-06-10 01:26:50 +02:00
Tobias Geerinckx-Rice 310c89e330
gnu: mobile-broadband-provider-info: Update to 20190116. 
* gnu/packages/gnome.scm (mobile-broadband-provider-info): Update to 20190116.
 2019-06-10 01:26:50 +02:00
Tobias Geerinckx-Rice 597ab33d6b
gnu: gnumeric: Update to 1.12.45. 
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.45.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice 0cece1b502
gnu: virtualgl: Update to 2.6.2. 
* gnu/packages/gl.scm (virtualgl): Update to 2.6.2.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice c3c9716e0e
gnu: cfitsio: Update to 3.47. 
* gnu/packages/astronomy.scm (cfitsio): Update to 3.47.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice ee861a54ab
gnu: radeontop: Don't use unstable tarball. 
* gnu/packages/linux.scm (radeontop)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[home-page]: Move down to its conventional spot.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice 88e1bce53e
gnu: radeontop: Update to 1.2. 
* gnu/packages/linux.scm (radeontop): Update to 1.2.
 2019-06-09 16:18:20 +02:00
Ricardo Wurmus 2d1d59ab57
gnu: r-rhisat2: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.2.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 61730c3db4
gnu: r-aucell: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 823e23fffe
gnu: r-msnbase: Update to 2.10.1. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 85e067161a
gnu: r-iranges: Update to 2.18.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 303862330b
gnu: r-numderiv: Update to 2016.8-1.1. 
* gnu/packages/statistics.scm (r-numderiv): Update to 2016.8-1.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus eb3f1c2d24
gnu: r-quantreg: Update to 5.40. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.40.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus e95d5ad958
gnu: r-fpc: Update to 2.2-2. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-2.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus d0b3d10e80
gnu: r-prabclus: Update to 2.3-1. 
* gnu/packages/statistics.scm (r-prabclus): Update to 2.3-1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus cb6d481561
gnu: r-e1071: Update to 1.7-2. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-2.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 6155b589c3
gnu: r-xml: Update to 3.98-1.20. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.20.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 815c7389b7
gnu: r-dbplyr: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 0638ee43a4
gnu: r-tibble: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.3.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus e7bc880274
gnu: r-markdown: Update to 1.0. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.0.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 754f09a333
gnu: r-rsvd: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rsvd): Update to 1.0.1.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 85f3ec6a7b
gnu: r-iso: Update to 0.0-18. 
* gnu/packages/cran.scm (r-iso): Update to 0.0-18.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus bf6895ef4f
gnu: r-performance: Update to 0.2.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.2.0.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus a1473cb4ec
gnu: r-sjstats: Update to 0.17.5. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.5.
[propagated-inputs]: Add r-bayestestr and r-performance; remove r-matrix.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 5bdc59c6a9
gnu: r-proc: Update to 1.15.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.15.0.
 2019-06-09 15:19:57 +02:00