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4817 Commits

Author SHA1 Message Date
Mark H Weaver c803ffcb3a gnu: icecat: Fix build against libvpx 1.4. 
* gnu/packages/patches/icecat-libvpx-1.4.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2015-07-06 23:01:56 -04:00
Mark H Weaver 0ba652b2f5 gnu: gst-plugins-good: Disable rtprtx tests that frequently fail. 
* gnu/packages/gstreamer.scm (arguments): Add 'disable-failing-rtprtx-tests'
  phase.
 2015-07-06 21:36:33 -04:00
Mark H Weaver 723e886656 gnu: libvpx: Update to 1.4.0. 
* gnu/packages/patches/libvpx-fix-armhf-link.patch,
  gnu/packages/patches/libvpx-fix-ssse3-quantize.patch,
  gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/video.scm (libvpx): Update to 1.4.0.  Remove patches.  Update
  source URI.
 2015-07-06 21:17:05 -04:00
Mark H Weaver 9ed5486439 gnu: libwmf: Fix CVE-2006-3376, CVE-2009-1364, CVE-2015-{0848,4588,4695,4696}. 
* gnu/packages/patches/libwmf-CVE-2006-3376.patch,
  gnu/packages/patches/libwmf-CVE-2009-1364.patch,
  gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libwmf)[source]: Add patches.
 2015-07-06 20:04:50 -04:00
Andreas Enge f2820e0763 gnu: libreoffice: Update to 4.4.4.3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 4.4.4.3.
 2015-07-06 08:26:42 +02:00
Ludovic Courtès 1109ddcd54 gnu: freeipmi: Update to 1.4.9. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.4.9.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès 6cb2533b1e gnu: gcal: Update to 4. 
* gnu/packages/gcal.scm (gcal): Update to 4.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès 0bd6f138d9 gnu: gxmessage: Update to 3.4.3. 
* gnu/packages/gxmessage.scm (gxmessage): Update to 3.4.3.
  [inputs]: Use GTK+ instead of GTK+-2.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès af87a551bc gnu: guile-sdl: Update to 0.5.2. 
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.2.
  [arguments]: Augment 'fix-env-and-path' phase to modify 'test/Makefile.in'.
 2015-07-06 00:47:09 +02:00
Ricardo Wurmus d19cf78357 gnu: powertabeditor: Update to 2.0.0-alpha8. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha8.
 2015-07-05 20:57:04 +02:00
Ricardo Wurmus 7e11d11355 gnu: powertabeditor: Enable tests. 
* gnu/packages/music.scm (powertabeditor)[arguments]: Run "pte_tests" in
  "check" phase; add phase "fix-tests".
 2015-07-05 20:57:04 +02:00
Andreas Enge cb6a802c01 gnu: Add LibreSSL. 
* gnu/packages/tls.scm (libressl): New variable.
 2015-07-05 19:03:34 +02:00
Andreas Enge e9aa8d0ccb gnu: Fix ambiguity between openssl package and license in tls module. 
* gnu/packages/tls.scm: Prefix imported licenses.
 2015-07-05 19:03:34 +02:00
Mark H Weaver 90e1cdae0c gnu: icecat: Add support for WebGL, CUPS, Hunspell, startup-notification, etc. 
Also remove most bundled libraries from the source, add comments about
libraries yet to be unbundled, explicitly link libxul.so with libraries that
might try (and fail) to dlopen, and remove the h264parse gstreamer module from
the blacklist.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add snippet.
  [inputs]: Add cups, gdk-pixbuf, glib, hunspell, libcanberra, libgnome,
  libxinerama, libxscrnsaver, mit-krb5, and startup-notification.
  [arguments]<#:configure-flags>: add "--enable-default-toolkit=cairo-gtk2",
  "--enable-pango", "--enable-gio", "--enable-svg", "--enable-canvas",
  "--enable-mathml", "--enable-startup-notification", "--disable-gnomevfs",
  "--disable-gconf", "--disable-gnomeui", and "--enable-system-hunspell".
  Remove outdated comment about "--with-system-bz2" not being used.
  <#:phases>: Use 'modify-phases'.  Add 'remove-h264parse-from-blacklist'
  and 'arrange-to-link-libxul-with-libraries-it-might-dlopen' phases.
 2015-07-05 12:58:56 -04:00
Andreas Enge cc2b77dfc7 gnu: Move content of openssl module into tls module. 
* gnu/packages/openssl.scm (openssl, perl-net-ssleay): Move to...
* gnu/packages/tls.scm: ...here.
* gnu/packages/openssl.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister deleted file.
* gnu/packages/{admin.scm, bittorrent.scm, certs.scm, ci.scm,
  cyrus-sasl.scm, databases.scm, dns.scm, ebook.scm, enlightenment.scm,
  gnunet.scm, libreoffice.scm, links.scm, mail.scm, messaging.scm,
  networking.scm, ntp.scm, openldap.scm, package-management.scm, pdf.scm,
  python.scm, qt.scm, rdesktop.scm, rdf.scm, ruby.scm, ssh.scm,
  synergy.scm, tor.scm, version-control.scm, video.scm, vpn.scm,
  w3m.scm, web.scm, weechat.scm, xiph.scm}: Adapt module import.
 2015-07-05 18:27:24 +02:00
Andreas Enge a7fd7b68a6 gnu: Rename module gnutls to tls. 
* gnu/packages/gnutls.scm: Rename to...
* gnu/packages/tls.scm: ... this.  Change module name accordingly.
* gnu/packages/{admin.scm, cups.scm, curl.scm, dc.scm, dns.scm, emacs.scm,
  ftp.scm, gnome.scm, gnunet.scm, gnupg.scm, gsasl.scm, lynx.scm,
  mail.scm, messaging.scm, package-management.scm, shishi.scm,
  task-management.scm, version-control.scm, video.scm, vpn.scm,
  webkit.scm, weechat.scm, wget.scm, wine.scm, xml.scm}: Adapt module
  import to new name.
* gnu-system.am (GNU_SYSTEM_MODULES): Rename gnutls module to tls.
 2015-07-05 17:09:42 +02:00
Andreas Enge a351c7c157 gnu: avidemux: Drop version 2.5. 
* gnu/packages/video.scm (avidemux-2.5): Delete variable.
 2015-07-05 12:23:12 +02:00
Ben Woodcroft af86047537 gnu: Add prodigal. 
* gnu/packages/bioinformatics.scm (prodigal): New variable.
 2015-07-05 02:56:53 -04:00
Ricardo Wurmus 151714ca8c gnu: shogun: Build with install RPATH. 
* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
  build with install RPATH.
 2015-07-04 17:55:30 +02:00
Ludovic Courtès e4fef9df27 gnu: englightenment: Use https URLs. 
* gnu/packages/enlightenment.scm (efl, elementary, emotion-generic-players,
  terminology, enlightenment): Use https instead of http since the latter
  redirects to the former.
 2015-07-04 17:08:53 +02:00
Efraim Flashner c4f8a7aacc gnu: enlightenment: Update to 0.19.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5.
 2015-07-04 16:50:18 +02:00
Efraim Flashner 88988b41a2 gnu: emotion-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:42 +02:00
Efraim Flashner 7b09969b2e gnu: evas-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:07 +02:00
Efraim Flashner 0179686d13 gnu: elementary: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2.
 2015-07-04 16:48:26 +02:00
Efraim Flashner 7e22d6fee9 gnu: efl: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.14.2.
 2015-07-04 16:47:42 +02:00
pjotrp 022170dca1 gnu: Add ruby-rake-compiler. 
* gnu/packages/ruby.scm (ruby-rake-compiler): New variable.
 2015-07-04 09:47:33 -04:00
Ricardo Wurmus 80e907fe57 gnu: eigen: Update to 3.2.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.5.
 2015-07-04 13:32:52 +02:00
Mark H Weaver 4463c0d216 gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}. 
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-07-04 05:44:10 -04:00
Andreas Enge 257b6c4375 gnu: unrtf: Fix download location. 
* gnu/packages/unrtf.scm (unrtf): Fix download location.
 2015-07-03 22:54:51 +02:00
Ricardo Wurmus b05d1c68bc gnu: r: Replace "atlas" with "openblas". 
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
 2015-07-03 18:45:14 +02:00
Ludovic Courtès 606c638016 gnu: gnutls: Move man3 pages to "doc" output. 
* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 4b0f2ef743 gnu: qt-4: Remove reference from "out" to "doc". 
* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag.
  Add 'move-doc' phase.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ff1989a599 gnu: qt-4: Use a more standard directory layout. 
* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir,
  -plugindir, and -translationdir.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès cba632c4a8 gnu: qt-4: Use 'modify-phases'. 
* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ef2f51a445 gnu: cups-filter: Install backends and filters under lib/cups. 
This ensures that they are stripped during the 'strip' phase, thereby removing
references to GCC and linux-libre-headers that would otherwise be found in
debugging symbols.

* gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and
  pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}.
  (cups)[arguments]: Adjust accordingly.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 6a52df505a gnu: mysql: Remove unnecessary binaries. 
This saves ~42 MiB on x86_64.

* gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 3f289db69d gnu: mysql: Strip references and GCC and other build-time dependencies. 
* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès b5b08878b6 gnu: mutt: Don't retain reference to GCC. 
* gnu/packages/patches/mutt-store-references.patch: New file.
* gnu/packages/mail.scm (mutt)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 9161ba818d gnu: ghostscript: Add "doc" output. 
* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field.
  [outputs]: New field.
  [arguments]: Add 'remove-doc-reference' phase.
 2015-07-03 15:28:06 +02:00
Mark H Weaver 08fa45b190 gnu: gnupg: Enable TLS support. 
* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config.
  [inputs]: Add gnutls.
  (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '().
 2015-07-02 12:35:12 -04:00
Mark H Weaver 5e5fa28e76 gnu: gnupg: Update to 2.1.6. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6.
 2015-07-02 12:35:12 -04:00
Ricardo Wurmus c61fe02cc0 gnu: Add WarpedLMM. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable.
 2015-07-02 11:16:46 +02:00
Ricardo Wurmus f4f4ced8dc gnu: r: Set default pager. 
* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to
  avoid "false" as a default pager.
 2015-07-02 10:50:55 +02:00
Ludovic Courtès 28de8d258b environment: Define 'GUIX_ENVIRONMENT'. 
* guix/scripts/environment.scm (create-environment): Define 'GUIX_ENVIRONMENT'.
* doc/guix.texi (Invoking guix environment): Document it.
* gnu/system/shadow.scm (default-skeletons): Adjust 'PS1' depending on whether
  'GUIX_ENVIRONMENT' is defined.
 2015-07-01 23:29:49 +02:00
Ricardo Wurmus d6902798d1 gnu: powertabeditor: Replace "gcc" with "libiberty". 
* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with
  "libiberty".
 2015-07-01 21:52:08 +02:00
Ricardo Wurmus d231bb3575 gnu: Add Hydrogen. 
* gnu/packages/music.scm (hydrogen): New variable.
 2015-07-01 21:52:08 +02:00
Mark H Weaver 5135aed92b gnu: linux-libre: Update to 4.1.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.1.
 2015-07-01 00:12:39 -04:00
Eric Bavier 58c1806908 gnu: git: Add inputs for send-email. 
* gnu/packages/version-control.scm (package-transitive-propagated-labels*)
  (package-propagated-input-refs): New procedures.
  (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl.
  [outputs]: Add send-email output.
  [arguments]: Add #:modules argument with srfi-1.  In 'split phase, wrap
  git-send-email.
 2015-06-30 05:01:42 -05:00
Eric Bavier c6ee18abb6 gnu: Add perl-authen-sasl. 
* gnu/packages/web.scm (perl-authen-sasl): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier 9fe938c19f gnu: Add perl-gssapi. 
* gnu/packages/web.scm (perl-gssapi): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier b1096f3dbb gnu: Add perl-net-smtp-ssl. 
* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
 2015-06-30 05:01:42 -05:00
Mark H Weaver d2e3caba5d gnu: curl: Disable test that fails on Hydra. 
* gnu/packages/curl.scm (arguments): Disable test 1510.
 2015-06-30 00:17:00 -04:00
Mark H Weaver 4617c2e383 gnu: curl: Update to 7.43.0. 
* gnu/packages/curl.scm (curl): Update to 7.43.0.
 2015-06-30 00:17:00 -04:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier 38f0a2bade gnu: openmpi: Upgrade to 1.8.5. 
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
  [native-inputs]: Add perl.
  [arguments]: Add configure flags for thread support.
 2015-06-29 15:34:36 -05:00
Eric Bavier 579f5c8a58 gnu: hwloc: Move numactl to inputs. 
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
  [inputs]: ...to here.
  [arguments]: New 'refine-libnuma' phase.
 2015-06-29 15:34:36 -05:00
Eric Bavier ce7d9c989d gnu: hwloc: Upgrade to 1.10.1. 
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
  [source]: Use patch.
  [propagated-inputs]: Remove libpci.
  [inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-06-29 15:34:36 -05:00
Eric Bavier 7362371da5 gnu: python-mccabe: Fix license field. 
* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
  'license:expat'.
 2015-06-29 15:34:35 -05:00
Cyril Roelandt e8df8f476e gnu: Add python-flake8. 
* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt a59e017cb1 gnu: Add python-mccabe. 
* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt e31d7f4420 gnu: Add python-pyflakes. 
* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
 2015-06-30 00:07:55 +02:00
Cyril Roelandt d889e6c4d9 gnu: Add python-pep8. 
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
 2015-06-30 00:07:55 +02:00
Ricardo Wurmus 2573410865 gnu: withershins: Use new "libiberty" package. 
* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
   [arguments]: Simplify "find-libiberty" phase.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus 2b6b6d13e7 gnu: Add libiberty. 
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus 74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus 82c370dea1 gnu: Add Blast+. 
* gnu/packages/bioinformatics.scm (blast+): New variable.
 2015-06-29 16:13:28 +02:00
Ludovic Courtès 11906b2c38 gnu: global: Update to 6.5. 
* gnu/packages/code.scm (global): Update to 6.5.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès 622a616e33 gnu: help2man: Update to 1.47.1. 
* gnu/packages/man.scm (help2man): Update to 1.47.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès b1f5fe0eb7 gnu: parallel: Update to 20150622. 
* gnu/packages/parallel.scm (parallel): Update to 20150622.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès dd138fc856 gnu: screen: Update to 4.3.1. 
* gnu/packages/screen.scm (screen): Update to 4.3.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès ce1e4bd58d gnu: texinfo: Add version 6.0. 
* gnu/packages/texinfo.scm (texinfo-6): New variable.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès ab5f49cf6a gnu: gcc-4.8: Update to 4.8.5. 
* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
 2015-06-29 14:42:10 +02:00
Ricardo Wurmus cc6ed47737 gnu: Add plink. 
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
 2015-06-29 12:54:48 +02:00
Eric Bavier 5c852e085d gnu: synergy: Upgrade to 1.7.3. 
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
  [source]: Use github for source download.  Add snippet to remove
  bundled source and binaries.
  [inputs]: Add openssl.
  [arguments]: Copy example configuration files to out during 'install
  phase.
 2015-06-28 12:03:30 -05:00
Ricardo Wurmus b5ad1659ba gnu: Add sfarkxtc. 
* gnu/packages/compression.scm (sfarkxtc): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus 646898b358 gnu: Add sfarklib. 
* gnu/packages/compression.scm (sfarklib): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus fcbeb00b70 gnu: Add Guitarix. 
* gnu/packages/audio.scm (guitarix): New variable.
 2015-06-28 18:59:57 +02:00
Ricardo Wurmus fb029d463d gnu: ardour: Update to 4.1. 
* gnu/packages/audio.scm (ardour): Update to 4.1.
 2015-06-28 14:34:08 +02:00
Ricardo Wurmus 58593975b0 gnu: Add libtar. 
* gnu/packages/compression.scm (libtar): New variable.
 2015-06-28 12:38:46 +02:00
Claes Wallin 60def646bb gnu: Add pv. 
* gnu/package/pv.scm (pv): New file.
 * gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-06-27 17:27:49 +03:00
Ludovic Courtès c92f1c0a33 gnu: Refer to 'gcc' instead of 'gcc-4.9'. 
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
  libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
  (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
  %gcc-static, %gcc-stripped): Likewise.
 2015-06-26 17:06:30 +02:00
Ludovic Courtès 744985761a gnu: youtube-dl: Update to 2015.06.25. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
 2015-06-26 16:56:43 +02:00
Ricardo Wurmus 3a1bfe186d gnu: Add python2-fastlmm. 
* gnu/packages/python.scm (python2-fastlmm): New variable.
 2015-06-26 15:29:01 +02:00
Ricardo Wurmus 0dde623211 gnu: Add python2-pysnptools. 
* gnu/packages/python.scm (python2-pysnptools): New variable.
 2015-06-26 15:29:01 +02:00
Mark H Weaver 1c080cb68a gnu: nettle: Disable ifunc method of library initialization. 
* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
  phase.
 2015-06-25 16:47:59 -04:00
Ricardo Wurmus 19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus eed67cbb8f gnu: Add default GCC and default gfortran. 
* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
 2015-06-25 18:28:54 +02:00
宋文武 96693d1d92 gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'. 
This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base.

* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
  (gst-plugins-base)[native-search-paths]: Remove.
 2015-06-25 10:09:08 +08:00
Ludovic Courtès eae5b3fff5 linux-initrd: Produce cpio archives with zeroed timestamps, etc. 
* guix/cpio.scm (file->cpio-header*): New procedure.
* gnu/build/linux-initrd.scm (write-cpio-archive): Add #:file->header argument
  to 'cpio:write-cpio-archive'.
 2015-06-24 18:05:03 +02:00
Ludovic Courtès 583323ca1d linux-initrd: Populate cpio archives in a deterministic order. 
* gnu/build/linux-initrd.scm (write-cpio-archive)[files]: Use 'sort' instead
  of 'reverse'.
 2015-06-24 18:05:03 +02:00