41ca406fa5
build-system/r: Use %bioconductor-version.
...
* guix/build-system/r.scm (bioconductor-uri): Use %bioconductor-version
instead of hard-coding the version string.
2019-09-16 12:26:25 +02:00
76c0b60821
import/cran: Export %bioconductor-version.
...
* guix/import/cran.scm (%bioconductor-version): Export it.
2019-09-16 12:26:25 +02:00
ad6e168b3f
gnu: evolution: Wrap with required path variables.
...
Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36896 >.
* gnu/packages/gnome.scm (evolution)[arguments]: Add a ‘wrap-program’
phase.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-09-16 12:17:48 +02:00
eb2e9ef4d9
gnu: Add cl-prevalence.
...
* gnu/packages/lisp.scm (cl-prevalence, sbcl-cl-prevalence, ecl-cl-prevalence): New variables.
2019-09-16 11:58:40 +02:00
5216632a95
gnu: Add s-sysdeps.
...
* gnu/packages/lisp.scm (sbcl-s-sysdeps, cl-s-sysdeps, ecl-s-sysdeps): New variables.
2019-09-16 11:58:21 +02:00
1d25447e8b
gnu: Add herbstluftwm.
...
* gnu/packages/wm.scm (herbstluftwm): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:57:58 +02:00
a1a4a40715
gnu: emacs-dumb-jump: Update to 0.5.3.
...
* gnu/packages/emacs-xyz.scm (emacs-dumb-jump): Update to 0.5.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:30:16 +02:00
1ece099d5c
gnu: git-annex: Update to 7.20190912.
...
* gnu/packages/haskell-apps.scm (git-annex): Update 7.20190912.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:36 +02:00
f2a3ff8591
gnu: git-annex: Build with MagicMime support.
...
git-annex has a mechanism for configuring whether a file is added to the annex
or stored in git. Building with MagicMime support makes it possible to
condition the behavior on a file's MIME type.
* gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:32 +02:00
e405912c20
gnu: Add ghc-magic.
...
* gnu/packages/haskell-xyz.scm (ghc-magic): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:27 +02:00
7e772cb66d
gnu: git-annex: Update license.
...
* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to
AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:10 +02:00
0074844366
pack: Provide a meaningful "repository name" for Docker.
...
Previously, images produced by 'guix pack -f docker' would always show
up as "profile" in the output of 'docker images'. With this change,
'docker images' shows a name constructed from the packages found in the
image--e.g., "bash-coreutils-grep-sed".
* guix/docker.scm (canonicalize-repository-name): New procedure.
(generate-tag): Remove.
(manifest): Add optional 'tag' parameter and honor it.
(repositories): Likewise.
(build-docker-image): Add #:repository parameter and pass it to
'manifest' and 'repositories'.
* guix/scripts/pack.scm (docker-image)[build]: Compute 'tag' and pass it
as #:repository to 'build-docker-image'.
2019-09-16 10:25:31 +02:00
9bbaf2ae72
pack: Add packages in the order in which they appear on the command line.
...
* guix/scripts/pack.scm (guix-pack)[manifest-from-args](packages):
Reverse order of packages taken from OPTS.
2019-09-16 10:25:16 +02:00
ec36339dfd
services: certbot: Add --manual-public-ip-logging-ok for manual challenges
...
* gnu/services/certbot.scm (certbot-command): Add
--manual-public-ip-logging-ok flag to the certbot command when doing a
manual challenge.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:22:35 +02:00
fb6e550d6b
gnu: retroarch: Update to 1.7.8.4.
...
* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4.
2019-09-16 08:25:04 +02:00
eca0f3d070
gnu: mgba: Update to 0.7.3.
...
* gnu/packages/emulators.scm (mgba): Update to 0.7.3.
2019-09-16 08:25:04 +02:00
d80a15696b
gnu: Add r-variancepartition.
...
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
2019-09-15 22:57:47 +02:00
2a360cf6ac
gnu: Add r-wavetiling.
...
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
2019-09-15 22:54:21 +02:00
f5349b4d5a
gnu: Add r-genomegraphs.
...
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
2019-09-15 22:51:52 +02:00
4c63eeb8a4
gnu: Add r-oligo.
...
* gnu/packages/bioconductor.scm (r-oligo): New variable.
2019-09-15 22:50:31 +02:00
d6a5d9b24f
gnu: Add r-affxparser.
...
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
2019-09-15 22:50:25 +02:00
df8576e5c9
gnu: Add r-variantfiltering.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
2019-09-15 22:41:03 +02:00
fc3719cc0f
gnu: Add r-shinythemes.
...
* gnu/packages/cran.scm (r-shinythemes): New variable.
2019-09-15 22:40:25 +02:00
41b8b05c9e
gnu: Add r-shinytree.
...
* gnu/packages/cran.scm (r-shinytree): New variable.
2019-09-15 22:33:50 +02:00
4112ff7e74
gnu: Add js-requirejs.
...
* gnu/packages/javascript.scm (js-requirejs): New variable.
2019-09-15 21:19:53 +02:00
bb0024dc69
gnu: Add r-reqon.
...
* gnu/packages/bioconductor.scm (r-reqon): New variable.
2019-09-15 21:07:57 +02:00
e5dfcd8e26
gnu: Add r-seqbias.
...
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
2019-09-15 21:07:56 +02:00
12105c6c3a
gnu: Add r-affycoretools.
...
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
2019-09-15 20:58:26 +02:00
01c7ba9982
gnu: Add r-oligoclasses.
...
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
2019-09-15 20:58:26 +02:00
15184fb386
gnu: Add r-reportingtools.
...
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
2019-09-15 20:58:25 +02:00
83b4209122
gnu: Add r-pfam-db.
...
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
2019-09-15 20:57:26 +02:00
4ca2d6c1a6
gnu: Add r-affycontam.
...
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
2019-09-15 20:53:27 +02:00
5094aa9472
gnu: Add r-affycompatible.
...
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
2019-09-15 20:53:21 +02:00
5cf940de21
gnu: Add r-affycomp.
...
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
2019-09-15 20:53:14 +02:00
53b1e10f23
gnu: Add r-affydata.
...
* gnu/packages/bioconductor.scm (r-affydata): New variable.
2019-09-15 20:53:01 +02:00
853211a51b
gnu: Add r-timeseriesexperiment.
...
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
2019-09-15 20:42:41 +02:00
739b2d10f0
gnu: Add r-wavcluster.
...
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
2019-09-15 20:41:01 +02:00
d77e69e9e1
gnu: r-spam: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
2019-09-15 16:15:37 +02:00
e48e476f41
gnu: r-feather: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
2019-09-15 16:15:37 +02:00
21fc601295
gnu: emacs-zerodark-theme: Update to 4.6.
...
* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
2019-09-15 15:29:18 +03:00
991c44109f
gnu: Add yubico-pam.
...
* gnu/packages/authentication.scm (yubico-pam): New variable.
2019-09-15 09:28:24 +02:00
9eac315069
gnu: r-delayedmatrixstats: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
2019-09-14 23:39:39 +02:00
82e343d14a
gnu: r-rhdf5lib: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
2019-09-14 23:39:25 +02:00
cd25e29616
gnu: r-rtracklayer: Update to 1.44.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
2019-09-14 23:39:20 +02:00
146f0ba5d1
gnu: r-genomicranges: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
2019-09-14 23:39:12 +02:00
7f518ef70b
gnu: r-s4vectors: Update to 0.22.1.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
2019-09-14 23:39:08 +02:00
11f973e093
gnu: r-mixomics: Update to 6.8.4.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
2019-09-14 23:39:03 +02:00
f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
2019-09-14 23:38:58 +02:00
ec0270b1e9
gnu: r-regioner: Update to 1.16.4.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
2019-09-14 23:38:51 +02:00
cd75c487c8
gnu: Add emacs-elixir-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
2019-09-14 19:44:40 +02:00
Ricardo Wurmus