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1321 Commits (5f82a9d5cc0e71797cdea6d4e80a7c9148b8bb92)

Author SHA1 Message Date
Roel Janssen cbd9f91c32
gnu: bcftools: Update to 1.8. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8.
* gnu/local.mk: Remove patch.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
 2018-04-27 01:11:42 +02:00
Leo Famulari 379848ed31
gnu: zsh: Update to 5.5.1. 
* gnu/packages/shells.scm (zsh): Update to 5.5.1.
[source]: Remove obsolete patches.
* gnu/packages/patches/zsh-CVE-2018-7548.patch,
gnu/packages/patches/zsh-CVE-2018-7549.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-04-26 15:06:03 -04:00
Marius Bakke 460292af30
gnu: qemu: Update to 2.12.0. 
* gnu/packages/patches/qemu-CVE-2018-7550.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/virtualization.scm (qemu): Update to 2.12.0.
[source](patches): Remove.
 2018-04-24 21:14:20 +02:00
Mark H Weaver c52872bfc4
Merge branch 'master' into core-updates 2018-04-21 05:02:52 -04:00
Leo Famulari e45f399bf9
gnu: qemu: Fix CVE-2018-7550. 
* gnu/packages/patches/qemu-CVE-2018-7550.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
 2018-04-18 11:38:45 -04:00
Pierre Langlois d09e31bdf6
gnu: libmygpo-qt: Update to 1.1.0. 
* gnu/packages/music.scm (libmygpo-qt): Update to 1.1.0.
[source]: Remove 'patches'.
[arguments]: Do not set BUILD_WITH_QT4=OFF, it is the default.
* gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-04-17 00:08:45 +02:00
Marius Bakke d0ee11b2f0
gnu: sharutils: Fix CVE-2018-1000097. 
* gnu/packages/patches/sharutils-CVE-2018-1000097.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (sharutils)[source](patches): Use it.
 2018-04-16 18:02:14 +02:00
Manolis Ragkousis fdb61400a0
gnu: mupen64plus-video-z64: Fix glew.h location. 
* gnu/packages/patches/mupen64plus-video-z64-glew-correct-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emulators.scm (mupen64plus-video-z64)[source]: Use it.
 2018-04-15 15:17:21 +03:00
Marius Bakke fe4adc12ed
gnu: htop: Update to 2.2.0. 
* gnu/packages/patches/htop-fix-process-tree.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/admin.scm (htop): Update to 2.2.0.
[source](patches): Remove.
 2018-04-15 12:31:49 +02:00
Efraim Flashner 1606da6c07
gnu: Add missing freeimage patch. 
This is a follow-up to a5d4c96b8d.

* gnu/packages/patches/freeimage-unbundle.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-04-13 10:57:04 +03:00
Eric Bavier de7f234a3a
gnu: datamash: Fix tests on ARM systems. 
* gnu/packages/patches/datamash-arm-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/datamash.scm (datamash)[source]: Use it.
 2018-04-12 22:55:51 -05:00
Eric Bavier 306d8630dc
gnu: cool-retro-term: Update to 1.0.1. 
* gnu/packages/terminals.scm (cool-retro-term): Update to 1.0.1.
[source]: Programmatically remove fonts.
[arguments]: Simplify 'configure phase and use 'invoke'.  Add 'install-man
phase.  'let*' -> 'let' where possible.
* gnu/packages/patches/cool-retro-term-remove-non-free-fonts.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-04-12 21:01:34 -05:00
Mark H Weaver ecfe88b764
gnu: qemu: Fix build with glibc-2.27. 
* gnu/packages/patches/qemu-glibc-2.27.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Add patch.
[native-inputs]: Add flex and bison.
* gnu/packages/bootloaders.scm (qemu-minimal-2.10)[source]: Add patch.
 2018-04-10 00:48:07 -04:00
Mark H Weaver caf4c7c8bd
gnu: btrfs-progs: Update to 4.15.1, fix build, use invoke. 
* gnu/packages/patches/btrfs-progs-e-value-block.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.15.1.
[arguments]: Use invoke.
[native-inputs]: Add grep.
 2018-04-10 00:47:12 -04:00
Mark H Weaver 713c975ac0
gnu: boost: Fix ICU support. 
* gnu/packages/patches/boost-fix-icu-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/boost.scm (boost)[source]: Add the patch.
[arguments]: In the custom configure phase, pass --with-icu=[...]
to ./bootstrap.sh
 2018-04-10 00:46:22 -04:00
Mark H Weaver f89aa1521a
Merge branch 'master' into core-updates 2018-04-10 00:42:22 -04:00
Marius Bakke 9bdbabe963
gnu: llvm, clang: Update to 6.0.0. 
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 6.0.0.
(clang-from-llvm)(patches): Set to empty list.
[arguments]: Adjust substitutions depending on major version.
(llvm-3.8, clang-runtime-3.8, clang-3.8): New public variables.
(clang-3.7, clang-3.6, clang-3.5)(patches): Add 'clang-3.5-libc-search-path.patch'.
(clang-3.9.1)(patches): Add 'clang-3.8-libc-search-path.patch'.
* gnu/packages/patches/clang-6.0-libc-search-path.patch: New file.
* gnu/packages/patches/clang-libc-search-path.patch: Rename to ...
* gnu/packages/patches/clang-3.5-libc-search-path.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-04-06 17:46:03 +02:00
Roel Janssen ea09f99f7f
gnu: 4store: Remove preprocessor directive. 
* gnu/packages/databases.scm (4store): Add patch to remove preprocessor
  directive.
* gnu/packages/patches/4store-unset-preprocessor-directive.patch: New file.
* gnu/local.mk: Register patch.
 2018-04-04 14:54:02 +02:00
Efraim Flashner 1bf7ef856b
gnu: libgpg-error: Fix building on aarch64-linux. 
* gnu/packages/patches/gnupg.scm (libgpg-error)[source]: Add patch.
* gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-04-02 15:17:57 +03:00
Ludovic Courtès 6422bde9b4
gnu: glibc: Reinstate fallback code for systems lacking 'prlimit64'. 
* gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch: New file.
* gnu/packages/base.scm (glibc/linux)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-04-01 12:36:02 +02:00
Arun Isaac 6009cdb4e3
gnu: python-pycairo: Update to 1.16.3. 
* gnu/packages/gtk.scm (python-pycairo): Update to 1.16.3.
[source]: Remove patch.
[build-system]: Switch to python-build-system.
[native-inputs]: Remove python-waf.
[home-page]: Use HTTPS URI.
* gnu/packages/patches/pycairo-wscript.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
 2018-03-31 00:29:35 +05:30
Roel Janssen fdc306879b
gnu: Add delly. 
* gnu/packages/bioinformatics.scm (delly): New variable.
* gnu/packages/patches/delly-use-system-libraries.patch: New file.
* gnu/local.mk: Include delly-use-system-libraries.patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-30 10:48:01 -04:00
Marius Bakke 5576cfabf3
Merge branch 'master' into core-updates 2018-03-29 17:34:41 +02:00
Marius Bakke ab0bdd5456
gnu: util-linux: Update to 2.32. 
* gnu/packages/patches/util-linux-tests.patch: Adjust context.
* gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (util-linux): Update to 2.32.
[source](patches): Remove 'util-linux-CVE-2018-7738.patch'.
 2018-03-29 02:43:06 +02:00
Mark H Weaver d4040f6e23
gnu: elogind: Fix build with glibc-2.27. 
* gnu/packages/patches/elogind-glibc-2.27.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/freedesktop.scm (elogind)[source]: Add patch.
[arguments]: Replace the bootstrap phase with what was previously the
autogen phase.
 2018-03-28 00:04:35 -04:00
Leo Famulari 4d99a3215c
gnu: mupdf: Fix CVE-2018-{6544,1000051}. 
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch,
gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2018-03-27 19:00:03 -04:00
Oleg Pykhalov 196c8b3739
gnu: translate-shell: Update to 0.9.6.7. 
* gnu/packages/patches/translate-shell-fix-curl-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.7.
[source](patches): Add it.  [home-page]: Append slash.
 2018-03-26 22:47:16 +03:00
Ludovic Courtès d2c036557a
gnu: hwloc@2: Update to 2.0.1. 
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1.
[source]: Remove 'patches'.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-03-26 18:24:55 +02:00
Efraim Flashner bab9793f54
gnu: classpath: Add aarch64-linux support. 
* gnu/packages/java.scm (classpath-bootstrap, classpath-0.99)[source]:
Add patch.
* gnu/packages/patches/classpath-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-03-26 12:21:33 +03:00
Danny Milosavljevic 6cf2ac3cd6
gnu: Add pure. 
* gnu/packages/pure.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-25 17:02:01 +02:00
Mark H Weaver d624eaaa37
gnu: pulseaudio: Fix build with glibc-2.27. 
* gnu/packages/patches/pulseaudio-glibc-2.27.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (pulseaudio)[source]: Add the patch.
[arguments]: Replace 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and libtool.
 2018-03-25 05:01:47 -04:00
Tobias Geerinckx-Rice 929e2d9f98
gnu: links: Update to 2.15. 
* gnu/packages/web-browsers.scm (links): Update to 2.15.
[source]: Remove patch for fixed CVE.
* gnu/packages/patches/links-CVE-2017-11114.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-03-25 00:36:30 +01:00
Arun Isaac 89db6c6de9
gnu: cmake: Update to 3.10.2. 
* gnu/packages/cmake.scm (cmake): Update to 3.10.2.
[source]: Remove cmake-fix-tests patch.
Do not remove bundled cmlibuv.
[arguments]: Replace system* with invoke.
[inputs]: Add rhash. Sort.
[home-page]: Update URL.
* gnu/packages/patches/cmake-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
 2018-03-23 11:32:24 +05:30
Danny Milosavljevic ec40a0501f
gnu: Add lyx. 
* gnu/packages/patches/lyx-2.2.3-fix-test.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/tex.scm (lyx): New variable.
 2018-03-22 23:11:17 +01:00
Marius Bakke e9b9ea1ec0
gnu: make: Fix compatibility with glibc 2.27. 
* gnu/packages/patches/make-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (gnu-make)[source](patches): Use it.
 2018-03-22 18:58:05 +01:00
Marius Bakke 5e8cb5e698
gnu: glibc: Update to 2.27. 
* gnu/packages/base.scm (glibc/linux): Update to 2.27.
[source](patches): Add 'glibc-hidden-visibility-ldconfig.patch' and
'glibc-2.27-git-fixes.patch'.
[native-inputs]: Add BISON.
[arguments]: Remove deprecated "--enable-add-ons" from #:configure-flags.
Also remove unneeded "libc_cv_ssp=no" and "libcv_ssp_strong=no".
(glibc-2.26): New public variable.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]:
Add BISON-BOOT0.
* gnu/packages/patches/glibc-2.27-git-fixes.patch,
gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2018-03-22 18:58:05 +01:00
Ludovic Courtès ca5b73114f
gnu: shepherd: Update to 0.4.0. 
* gnu/packages/admin.scm (shepherd): Update to 0.4.0.  Remove patches.
* gnu/packages/patches/shepherd-close-fds.patch,
gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/services/admin.scm (%default-rotations): Remove
/var/log/shepherd.log.
 2018-03-22 11:43:30 +01:00
Mark H Weaver ac21be848a
Merge branch 'master' into core-updates 2018-03-20 14:22:06 -04:00
Marius Bakke dc7e07c9b9
Merge branch 'staging' 2018-03-20 14:13:05 +01:00
Marius Bakke 019c0eda94
gnu: fontconfig: Update to 2.13.0. 
* gnu/packages/patches/fontconfig-remove-debug-printf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.0.
[source](patches): Remove.
[propagated-inputs]: Add UTIL-LINUX.
 2018-03-20 11:57:25 +01:00
Mark H Weaver 647888845c
Merge branch 'master' into core-updates 2018-03-20 00:49:05 -04:00
Tobias Geerinckx-Rice eaa69a7996
gnu: libtirpc: Update to 1.0.3. 
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-03-19 13:25:27 +01:00
Mark H Weaver 56f31a9fd5
gnu: guile-gdbm-ffi: Add support for gdbm-1.14. 
* gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

* gnu/packages/guile.scm (guile-gdbm-ffi)[inputs]: Move above arguments.  Add
the patch, and the 'patch' program.
[propagated-inputs]: Move above arguments.
[arguments]: In the builder, add code to apply the patch.
 2018-03-18 23:30:31 -04:00
Marius Bakke 7ace97395f
Merge branch 'master' into staging 2018-03-18 01:09:25 +01:00
Christopher Baines be5ed14213
gnu: Add terraform-docs. 
* gnu/packages/terraform.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-17 23:04:29 +00:00
Gábor Boskovits 3c27414968
gnu: java-simple-xml: Fix java8 test failures. 
* gnu/packages/patches/javas-simple-xml-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/java.scm (java-simple-xml)[source](patches): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-18 00:02:05 +01:00
Mark H Weaver 96c7fde7dd
gnu: libvorbis: Ungraft. 
* gnu/packages/xiph.scm (libvorbis): Update to 1.3.6.
[replacement]: Remove field.
[source]: Remove patches.
(libvorbis-1.3.6): Remove variable.
 2018-03-17 03:36:11 -04:00
Mark H Weaver 9f388b1ee1
Merge branch 'master' into core-updates 2018-03-17 01:18:37 -04:00
Marius Bakke ff19532fd5
gnu: binutils: Update to 2.30. 
* gnu/packages/patches/binutils-ld-new-dtags.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/base.scm (binutils): Update to 2.30.
[source](patches): Remove obsolete patch.
[arguments]: Add "--enable-new-dtags" in #:configure-flags.
 2018-03-16 15:32:22 +01:00
Leo Famulari 77166eb758
gnu: util-linux: Fix CVE-2018-7738. 
* gnu/packages/patches/util-linux-CVE-2018-7738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
 2018-03-16 10:31:52 -04:00
Mark H Weaver 45413064c9
gnu: tar: Fix sparse file detection on Btrfs file systems. 
* gnu/packages/patches/tar-remove-wholesparse-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (tar)[source]: Add patch.
 2018-03-16 09:31:00 -04:00
Leo Famulari 20ecede969
gnu: shadow: Fix CVE-2018-7169. 
* gnu/packages/patches/shadow-CVE-2018-7169.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shadow)[source]: Use it.
 2018-03-15 13:13:35 -04:00
Marius Bakke 2f437b22e2
gnu: glib: Update to 2.56.0. 
* gnu/packages/glib.scm (glib): Update to 2.56.0.
[source](patches): Remove obsolete patch.
[arguments]: Disable new MIME test.
* gnu/packages/patches/glib-respect-datadir.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-03-15 00:02:46 +01:00
Ricardo Wurmus 8c72ed923d
Merge branch 'master' into core-updates 2018-03-14 17:37:20 +01:00
Ricardo Wurmus 2b5c5f03c2
gnu: Add ada.scm to GNU_SYSTEM_MODULES. 
This is a follow-up to commit ebd43a2a45.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add ada.scm.
 2018-03-14 13:21:26 +01:00
Efraim Flashner 8e1cd1a2c5
gnu: Add debian-archive-keyring. 
* gnu/packages/debian.scm (debian-archive-keyring): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-12 21:54:44 +02:00
Marius Bakke a248a9ac6a
Merge branch 'staging-next' into staging 2018-03-12 18:22:53 +01:00
Tobias Geerinckx-Rice 5400fdfd5d
gnu: lrzip: Fix CVE-2017-8842. 
* gnu/packages/compression.scm (lrzip)[source]: Add patch.
* gnu/packages/patches/lrzip-CVE-2017-8842.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-03-12 18:15:21 +01:00
Gábor Boskovits 594bd3a08a
gnu: java-jeromq: Fix tests. 
* gnu/packages/patches/java-jeromq-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (java-jeromq)[source](patches): Add it.
[arguments](#test-exclude): Disable more failing tests.
 2018-03-11 20:06:06 +01:00
Leo Famulari f55aa0c7b7
gnu: zsh: Fix CVE-2018-{7548,7549}. 
* gnu/packages/patches/zsh-CVE-2018-7548.patch,
gnu/packages/patches/zsh-CVE-2018-7549.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/shells.scm (zsh)[source]: Use them.
 2018-03-10 12:30:53 -05:00
Marius Bakke d8fa1890c7
Merge branch 'master' into staging 2018-03-08 21:21:05 +01:00
Marius Bakke 236b7aed82
gnu: libxcb: Update to 1.13. 
* gnu/packages/xorg.scm (libxcb): Update to 1.13.
[source](patches): Remove.
* gnu/packages/patches/libxcb-python-3.5-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-03-08 18:30:41 +01:00
Marius Bakke 460d07b463
gnu: xcb-proto: Update to 1.13. 
* gnu/packages/xorg.scm (xcb-proto): Update to 1.13.
[source](patches): Remove.
* gnu/packages/patches/xcb-proto-python3-print.patch,
gnu/packages/patches/xcb-proto-python3-whitespace.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-03-08 18:30:41 +01:00
Marius Bakke 6eb45016d6
gnu: graphite2: Update to 1.3.11. 
* gnu/packages/patches/graphite2-ffloat-store.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.11.
[source](patches): Remove.
 2018-03-08 14:01:29 +01:00
Hartmut Goebel 7ac43c44e8
gnu: giflib: Make "reallocarray" private, solve glibc@2.26 conflict. 
Rename the function and move the declaration from gif_lib.h to
gif_lib_private.h to solve conflicts when some .c-file #includes
both stdlib.h and gif_lib.h.
See also https://sourceforge.net/p/giflib/bugs/110/

* gnu/packages/patches/giflib-make-reallocarray-private.patch: New
  file
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image.scm(giflib)[source](patches): New field.
 2018-03-08 09:05:52 +01:00
Marius Bakke 5de561a796
gnu: gnome-todo: Fix compatibility with libical >= 3.0. 
* gnu/packages/patches/gnome-todo-libical-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-todo)[source](patches): Use it.
 2018-03-07 15:06:22 +01:00
Julien Lepiller 41125eaff8
gnu: Add maven-resolver-api. 
* gnu/packages/maven.scm: New file.
(maven-resolver-api): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-06 23:05:34 +01:00
Leo Famulari 613ef763a5
Merge branch 'master' into staging 2018-03-06 13:39:12 -05:00
Marius Bakke 5b0b520e22
gnu: ceph: Update to 12.2.4. 
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags.  Build with
CMAKE-3.11.  Adjust file substitutions.  Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66.  Add PYTHON2-PRETTYTABLE.
 2018-03-04 17:54:40 +01:00
Gábor Boskovits 48c8622010
gnu: antlr3-3.3: Fix java8 issue. 
* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-03-04 14:16:37 +01:00
Gábor Boskovits 4c763b4d67
gnu: antlr3-3.1: Fix java8 issue. 
* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-03-04 14:13:47 +01:00
Ricardo Wurmus fa5965990d
gnu: Add r-hpar. 
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-02 23:24:57 +01:00
Mark H Weaver 8863f2f051
gnu: icecat: Update to 52.6.0-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1.
[source]: Remove patches that are no longer needed.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1415133.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-03-02 01:31:19 -05:00
Julien Lepiller 8147d7c675
gnu: php: Fix test failure. 
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-03-01 22:25:28 +01:00
Ricardo Wurmus b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32. 
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
 2018-03-01 21:32:36 +01:00
Marius Bakke 86990eeda2
Merge branch 'master' into staging 2018-03-01 18:04:12 +01:00
Tobias Geerinckx-Rice 9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-28 22:58:23 +01:00
Marius Bakke 53453d7acc
gnu: wavpack: Fix CVE-2018-6767. 
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
 2018-02-28 20:29:46 +01:00
Tobias Geerinckx-Rice 8297ff0f93
gnu: pcre2: Update to 10.31. 
* gnu/packages/pcre.scm (pcre2): Update to 10.31.
[source]: Remove upstreamed patches.
* gnu/packages/patches/pcre2-CVE-2017-7186.patch: Delete this file...
* gnu/packages/patches/pcre2-CVE-2017-8786.patch: ...and this one.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-02-28 18:23:31 +01:00
Marius Bakke b39667cdcb
gnu: python-mox3: Update to 0.24.0. 
* gnu/packages/openstack.scm (python-mox3): Update to 0.24.0.
[source](patches): New field.
[arguments]: Remove.
[native-inputs]: Add PYTHON-OPENSTACKDOCSTHEME and PYTHON-SUBUNIT.  Replace
PYTHON-SPHINX with PYTHON-SPHINX-1.6.  Move PYTHON-PBR and PYTHON-FIXTURES ...
[propagated-inputs]: ... here.  New field.
[description]: Don't mention explicit Python versions.
* gnu/packages/patches/python-mox3-python3.6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-02-28 13:59:00 +01:00
Tobias Geerinckx-Rice 1143450c14
gnu: dblatex: Update to 0.3.10. 
* gnu/packages/docbook.scm (dblatex): Update to 0.3.10.
[source]: Remove patch.
* gnu/packages/patches/dblatex-remove-multirow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-28 04:13:19 +01:00
Oleg Pykhalov e1cf4fd2d2
services: cgit: Add more configuration fields. 
* gnu/services/version-control.scm (cgit-service-type): Move to separate file.
* gnu/services/cgit.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add this.
* gnu/tests/version-control.scm: Add this.
* doc/guix.texi (Cgit Service): Document this.
 2018-02-28 04:40:56 +03:00
Tobias Geerinckx-Rice d5d7d26df7
gnu: perl-gd: Update to 2.68. 
* gnu/packages/gd.scm (perl-gd): Update to 2.68.
[source]: Remove obsolete patch.
[native-inputs]: Remove perl-module-build.
[inputs]: Use canonical package names and order alphabetically.
[arguments]: Replace #:module-build-flags with fewer #:make-maker-flags,
enable #:tests?, and remove ‘clear-autogenerated-files’ phase.
* gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-27 16:49:58 +01:00
Marius Bakke 2115bde302
gnu: python-parse: Update to 1.8.2. 
* gnu/packages/patches/python-parse-too-many-fields.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-parse): Update to 1.8.2.
[source](patches): Remove.
[arguments]: Use INVOKE instead of SYSTEM*.
 2018-02-26 02:39:15 +01:00
Alex ter Weele f61682e7ea
gnu: Add agda. 
* gnu/packages/agda.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add adga.scm.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-26 01:42:35 +01:00
Marius Bakke 5697897537
gnu: json-glib: Fix 32-bit test failures. 
* gnu/packages/patches/json-glib-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (json-glib)[source](patches): New field.
 2018-02-25 04:28:21 +01:00
Kei Kebreau 0181df537f
gnu: wxmaxima: Update to 18.02.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0.
[source]: Add patch.
[build-system]: Use the cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[arguments]: Disable tests, remove 'autoconf' phase.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-02-24 18:05:52 -05:00
Marius Bakke e58bf025df
Merge branch 'master' into core-updates 2018-02-24 21:49:30 +01:00
Marius Bakke 5f9b018aa8
Merge branch 'master' into staging 2018-02-24 19:04:13 +01:00
Oleg Pykhalov d5ee4342c0
gnu: Add perl-regexp-pattern-license. 
* gnu/packages/license.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add this.
 2018-02-24 20:01:29 +03:00
Clément Lassieur 60628f5452
gnu: password-store: Fix compatibility with GnuPG 2.2.5. 
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
 2018-02-24 12:57:39 +01:00
Marius Bakke 65f704f373
gnu: wavpack: Fix CVE-2018-7253 and CVE-2018-7254. 
* gnu/packages/patches/wavpack-CVE-2018-7253.patch,
gnu/packages/patches/wavpack-CVE-2018-7254.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/audio.scm (wavpack)[source](patches): Use them.
 2018-02-23 20:40:51 +01:00
Tobias Geerinckx-Rice bbf8832f16
gnu: optipng: Update to 0.7.7 [security fixes]. 
This release claims to fix 2 vulnerabilities:
- ‘an integer overflow vulnerability in the TIFF decoder’
  (CVE-2017-1000229, previously patched in Guix), and
- ‘a buffer overflow vulnerability in the GIF decoder’.

* gnu/packages/image.scm (optipng): Update to 0.7.7.
[source]: Remove patch.
[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-23 16:00:04 +01:00
Rutger Helling 6352e99437
gnu/local.mk: Add emulators.scm. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Add emulators.scm.
 2018-02-22 09:16:19 +01:00
Tobias Geerinckx-Rice 79f0561f43
gnu: htop: Fix tree view. 
* gnu/packages/patches/htop-fix-process-tree.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (htop)[source]: Use it.
 2018-02-21 15:02:49 +01:00
Pjotr Prins 1b541c3e93
gnu: ldc: Update to 1.7.0. 
Fixes recent bootstrap and updates ldc and package manager to match.

* gnu/packages/ldc.scm (ldc-bootstrap): Update to 0.17.4.
[properties]: Add max-slient-time.
[arguments]<#:phases>[patch-phobos]: Update patches (see below).
(ldc): Update to 1.7.0.
(ldc-beta): Delete variable.
[arguments]<#:phases>[patch-phobos]: Update patches (see below).
[arguments]<#:phases>[check]: Use invoke.
(rdmd): Update to 2.077.1.
(dub): Update to 1.7.2.
* gnu/local.mk (dist_patch_DATA): Remove "ldc-disable-tests.patch".
Add "ldc-bootstrap-disable-tests.patch".
Remove "ldc-1.1.0-disable-phobos-tests.patch".
Add "ldc-1.7.0-disable-phobos-tests.patch".
Remove "ldc-1.1.0-disable-dmd-tests.patch".

Co-Authored-By: Danny Milosavljevic <dannym@scratchpost.org>
 2018-02-20 19:36:34 +01:00
Marius Bakke 5fa6b52a54
gnu: qemu: Update to 2.11.1. 
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.11.1
[source](patches): Remove.
 2018-02-20 17:44:43 +01:00
Marius Bakke 7f69459aca
Merge branch 'master' into staging 2018-02-20 17:36:56 +01:00
Marius Bakke b1989c1250
gnu: freetype: Fix CVE-2018-6942. 
* gnu/packages/patches/freetype-CVE-2018-6942.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (freetype)[replacement]: New field.
(freetype/fixed): New variable.
 2018-02-20 16:26:20 +01:00
Marius Bakke f55ef78b5c
gnu: gtk+@2: Update to 2.24.32. 
* gnu/packages/patches/gtk2-fix-failing-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.32.
[source]: Remove 'gtk2-fix-failing-test.patch'.
 2018-02-20 14:55:58 +01:00