932d6e276b
gnu: wxmaxima: Update to 19.03.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
2019-04-02 14:45:22 -04:00
a6f9f18c7e
gnu: livemedia-utils: Update to 2019.03.06.
...
* gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06.
[source]: Remove snippet.
2019-04-02 14:44:14 -04:00
295197500f
gnu: Syncthing: Update to 1.1.1.
...
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.1.
2019-04-02 13:07:03 -04:00
9c1b4316dc
gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes].
...
Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256
GiB of keystream is generated, or if the counter otherwise grows greater than 32
bits, the amd64 implementation will first generate incorrect output, and then
cycle back to previously generated keystream.
https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d
* gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519,
go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to
0.0.0-3.b7391e9.
(go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add
go-golang-org-x-sys-cpu.
(go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal):
Inherit from go-golang-org-x-crypto-bcrypt.
2019-04-02 13:07:03 -04:00
4a136536e8
gnu: Add go-golang-org-x-sys-cpu.
...
* gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable.
2019-04-02 13:07:03 -04:00
af76c020bf
linux-container: Make the guest UID and GID a parameter.
...
* gnu/build/linux-container.scm (initialize-user-namespace): Add
#:guest-uid and #:guest-gid parameters and honor them.
(run-container): Likewise.
(call-with-container): Likewise.
* tests/containers.scm ("call-with-container, user namespace, guest UID/GID"):
New test.
2019-04-02 18:15:37 +02:00
cbe40b8b24
gnu: pigx-scrnaseq: Use older loompy.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
python-loompy with python-loompy-for-pigx-scrnaseq.
2019-04-02 16:11:23 +02:00
dc112a0fe2
gnu: Add python-loompy-for-pigx-scrnaseq.
...
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
2019-04-02 16:11:12 +02:00
82cc117450
gnu: pigx-chipseq: Update to 0.0.40.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40.
2019-04-02 15:53:23 +02:00
b4a33870f6
gnu: python-scanpy: Add python-louvain to inputs.
...
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort
inputs and add python-louvain.
[arguments]: Do not delete test that depends on louvain.
2019-04-02 15:11:45 +02:00
6ee48091a4
gnu: Add python-louvain.
...
* gnu/packages/graph.scm (python-louvain): New variable.
2019-04-02 15:11:45 +02:00
ba907ae362
gnu: faudio: Update to 19.04.
...
* gnu/packages/audio.scm (faudio): Update to 19.04.
2019-04-02 11:30:05 +02:00
c97ad2fd8b
gnu: Add emacs-evil-numbers.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-numbers): New variable.
2019-04-02 10:55:07 +02:00
d6fda4d3d1
gnu: gnome-shell: Add dependency on libgnomekbd.
...
This fixes the "Show keyboard layout" button in the keyboard layout
switcher.
* gnu/packages/gnome.scm (gnome-shell)[arguments]: In
'record-absolute-file-names' phase, record file name of
'gkbd-keyboard-display'.
[inputs]: Add LIBGNOMEKBD.
2019-04-01 23:21:02 +02:00
2472cdec25
gnu: gnome-shell: Store absolute file name of 'ibus-daemon'.
...
* gnu/packages/gnome.scm (gnome-shell)[arguments]: Add
'record-absolute-file-names' phase.
2019-04-01 23:20:56 +02:00
0e55864036
gnu: go-github-com-burntsushi-toml: Update to 0.3.1.
...
* gnu/packages/golang.scm (go-github-com-burntsushi-toml): Update to 0.3.1.
2019-04-01 16:07:21 -04:00
413f61265e
gnu: Add mlucas.
...
* gnu/packages/maths.scm (mlucas): New variable.
2019-04-01 17:07:31 +05:30
cce9e3792a
gnu: flatpak: Update to 1.2.4 [fixes CVE-2019-10063].
...
* gnu/packages/package-management.scm (flatpak): Update to 1.2.4 [fixes
CVE-2019-10063].
2019-04-01 10:05:58 +02:00
6bc30a571c
gnu: openmw: Update to 0.45.0.
...
* gnu/packages/game-development.scm (openmw): Update to 0.45.0.
2019-04-01 09:43:56 +02:00
f125c5a5ea
gnu: emacs-zones: silence byte-compiler.
...
* gnu/packages/patches/emacs-zones-called-interactively.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-31 23:32:47 +02:00
7a352f76cf
gnu: gpodder: Build reproducibly.
...
* gnu/packages/gpodder.scm (gpodder)[arguments]: Add 'do-not-run-msgmerge'
phase before 'install'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-31 23:32:47 +02:00
bab7a49558
services: slim-configuration: Adapt exported getter methods.
...
Commit 554b860739
2019-03-31 23:32:46 +02:00
631a6e6377
doc: Document 'gdm-service-type'.
...
* doc/guix.texi (X Window): Document 'gdm-service-type' and
'gdm-configuration'. Take description of '.desktop' files from the
'slim-service-type' description.
* gnu/services/xorg.scm (gdm-service): Remove outdated comment.
2019-03-31 23:32:46 +02:00
105fa9fcf7
gnu: ungoogled-chromium: Update to 73.0.3683.86-0.4c7fb6d [security fixes].
...
The update to Chromium 73 includes more than 60 security fixes. See the
release announcement for more information:
<https://chromereleases.googleblog.com/2019/03/stable-channel-update-for-desktop_12.html >.
* gnu/packages/chromium.scm (%preserved-third-party-files): Drop
"net/third_party/http2" and "net/third_party/spdy". Add "v8/src/third_party/siphash".
(%chromium-version): Update to 73.0.3683.86.
(%ungoogled-revision): Update to 4c7fb6d1a86602999f30b58ef8b331b2115c5ad8.
(%debian-revision): New variable.
(ungoogled-chromium-source): Add an origin for Debians packaging scripts.
Adjust for Ungoogled refactoring and add a procedure for applying Debian
patches. Replace unneeded LET* for LET and reindent.
(ungoogled-chromium)[arguments]: Remove one obsolete substitution, add two others.
2019-03-31 21:26:17 +02:00
799aebd71f
gnu: ungoogled-chromium: Enable VA-API on x86_64-linux only.
...
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Conditionally add
"use_vaapi" to #:configure-flags.
2019-03-31 21:26:17 +02:00
3725865f84
gnu: SDDM: Update to 0.18.1.
...
* gnu/packages/display-managers.scm (sddm): Update to 0.18.1.
2019-03-31 21:26:17 +02:00
a02d390357
gnu: mbedtls-apache: Update to 2.16.1.
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.1.
2019-03-31 21:26:16 +02:00
ee74a07668
gnu: pcsc-lite: Update to 1.8.25.
...
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.25.
2019-03-31 21:26:16 +02:00
1e3c711923
gnu: python-markdown: Update to 3.1.
...
* gnu/packages/python-xyz.scm (python-markdown): Update to 3.1.
2019-03-31 21:26:16 +02:00
fa542ee48a
gnu: ffmpeg@3.4: Update to 3.4.6.
...
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.6.
2019-03-31 21:26:16 +02:00
3b3fd90377
gnu: elogind: Update to 241.2.
...
* gnu/packages/freedesktop.scm (elogind): Update to 241.2.
2019-03-31 21:26:16 +02:00
4f0464c923
gnu: whois: Update to 5.4.2.
...
* gnu/packages/networking.scm (whois): Update to 5.4.2.
2019-03-31 21:26:16 +02:00
32deef23f6
gnu: libssh2: Update to 1.8.2.
...
* gnu/packages/ssh.scm (libssh2): Update to 1.8.2.
2019-03-31 21:26:16 +02:00
5089ebc3a3
gnu: GnuPG: Update to 2.2.15.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.15.
2019-03-31 21:26:16 +02:00
5cc013f05d
gnu: leveldb: Update to 1.21.
...
* gnu/packages/databases.scm (leveldb): Update to 1.21.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
2019-03-31 21:26:15 +02:00
ad7c77fd75
gnu: leveldb: Don't use unstable tarball.
...
* gnu/packages/databases.scm (leveldb)[source]: Use GIT-FETCH.
2019-03-31 21:26:15 +02:00
e73ded3c71
services: Open vSwitch: Provide a default configuration.
...
* gnu/services/networking.scm (openvswitch-service-type): Provide
OPENVSWITCH-CONFIGURATION as a default value.
* gnu/tests/networking.scm (%openvswitch-os): Don't configure the service.
2019-03-31 21:26:15 +02:00
d7d3bdca89
gnu: rust: Update to 1.32.0.
...
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.31): ...this.
(rust): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-31 21:11:55 +02:00
ccbaeba38e
gnu: python-language-server: Update to 0.26.1.
...
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.26.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-03-31 21:16:17 +03:00
36a4366d79
gnu: Fix descriptions to not use quotes.
...
* gnu/packages/admin.scm (wpa-supplicant-minimal, mingetty, di),
* gnu/packages/audio.scm (fil-plugins),
* gnu/packages/base.scm (make-ld-wrapper, make-glibc-locales),
* gnu/packages/bioinformatics.scm (r-samtools),
* gnu/packages/chez.scm (chez-mit),
* gnu/packages/commencement.scm (make-gcc-toolchain),
* gnu/packages/compression.scm (fastjar),
* gnu/packages/cran.scm (r-maps, r-rcpp),
* gnu/packages/databases.scm (sparql-query),
* gnu/packages/dunst.scm (dunst),
* gnu/packages/ftp.scm (ncftp),
* gnu/packages/gl.scm (freeglut),
* gnu/packages/haskell-check.scm (ghc-tasty-golden),
* gnu/packages/haskell.scm (ghc-case-insensitive, ghc-text,
ghc-haskell-src, ghc-syb, ghc-deepseq-generics, ghc-network-uri,
ghc-rerebase, ghc-zlib),
* gnu/packages/image.scm (jbig2dec),
* gnu/packages/kde-frameworks.scm (kinit, karchive),
* gnu/packages/linux.scm (wireless-tools, perf, module-init-tools, kbd),
* gnu/packages/lirc.scm (lirc),
* gnu/packages/lisp.scm (uglify-js),
* gnu/packages/mate.scm (mate-netbook),
* gnu/packages/microcom.scm (microcom),
* gnu/packages/music.scm (bristol),
* gnu/packages/networking.scm (perl-geo-ip),
* gnu/packages/patchutils.scm (patches),
* gnu/packages/perl-check.scm (perl-test-more-utf8),
* gnu/packages/perl.scm (perl-log-report-optional, perl-file-which,
perl-io-tty, perl-log-any, perl-digest-sha1, perl-class-load,
perl-regexp-common, perl-module-pluggable, perl-class-modifier),
* gnu/packages/python-xyz.scm (python-backports-abc, python-natsort),
* gnu/packages/samba.scm (iniparser),
* gnu/packages/search.scm (mlocate),
* gnu/packages/spice.scm (spice),
* gnu/packages/statistics.scm (r-dt, r-lubridate, r-estimability,
r-commonmark, r-digest, r-viridislite, r-stringr),
* gnu/packages/tex.scm (texlive-latex-changebar),
* gnu/packages/version-control.scm (subversion),
* gnu/packages/w3m.scm (w3m),
* gnu/packages/web.scm (perl-http-parser,
perl-plack-middleware-reverseproxy),
* gnu/packages/xorg.scm (xkeyboard-config, mkfontdir, xcursor-theme,
mkfontscale, xinit, font-alias)[description]: Use @code instead of quotes.
2019-03-31 20:51:10 +03:00
cd9ca20a5d
gnu: znc: Update to 1.7.3.
...
* gnu/packages/messaging.scm (znc): Update to 1.7.3.
2019-03-31 16:05:18 +02:00
ad4f644226
gnu: Add flare.
...
* gnu/packages/games.scm (flare-engine, flare-game): New variables.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2019-03-31 10:35:31 +08:00
6d3e149f10
gnu: dovecot: Update to 2.3.5.1 [fixes CVE-2019-7524].
...
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.1.
2019-03-30 15:57:13 -04:00
6e1f91d91c
gnu: khal: Update to 0.10.0.
...
* gnu/packages/calendar.scm (khal): Update to 0.10.0.
[native-inputs]: Replace tzdata with tzdata-for-tests.
[arguments]: Simplify the check phase.
2019-03-30 15:10:19 -04:00
e23f2ff183
gnu: Rename "gnubackgammon" back to "gnubg".
...
This reverts c97e4d8bbe
2019-03-30 15:19:32 +01:00
329c3c323e
gnu: guile: Remove version 2.0.13.
...
This package was unused since 0991fd5336
2019-03-30 15:19:32 +01:00
528ea990c3
gnu: Use 'this-package' as a native input instead of 'self-native-input?'.
...
* gnu/packages/file.scm (file)[self-native-input?]: Remove.
[native-inputs]: New field.
* gnu/packages/guile.scm (guile-1.8)[self-native-input?]: Remove.
[native-inputs]: New field.
(guile-2.0)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/ncurses.scm (ncurses)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/python-xyz.scm (python-file)[self-native-input?]: Remove.
[native-inputs]: New field.
2019-03-30 15:19:32 +01:00
398747f8f1
gnu: gnome-shell: Remove gnome-control-center from inputs.
...
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Remove
gnome-control-center.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:32 +01:00
da43d1cb32
gnu: evolution-data-server: Add 'libedataserverui' output.
...
gnu/packages/gnome.scm (evolution-data-server)[outputs]: Add
'libedataserverui'.
[arguments]: Add phases so that only libedataserverui is linked with
WebKitGTK, and that it is moved to its own output.
(evolution, gnome-calendar, gnome-todo)[inputs]: Add libedataserverui.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:31 +01:00
14c297fde1
gnu: gnome-online-accounts: Split off 'lib' output.
...
gnu/packages/gnome.scm (gnome-online-accounts)[outputs]: Add 'lib'.
[arguments]: Set the 'libdir' path to the 'out' output, and add a phase
to ensure that libgoa gets installed in the 'lib' output.
(evolution-data-server, gfbgraph, gnome-calendar, gnome-control-center,
gnome-todo, libgdata, libzapojit): Use the 'lib' output of
gnome-online-accounts.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:31 +01:00
29a9eb9e1a
gnu: Add emacs-counsel-projectile.
...
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-30 17:03:57 +03:00
03a33eee72
gnu: wine-staging: Update to 4.5.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.5.
* gnu/packages/wine.scm (wine-staging): Update to 4.5.
2019-03-30 14:58:36 +01:00
d8bead6c5d
system: Define 'this-operating-system'.
...
* gnu/system.scm (<operating-system>): Choose 'this-operating-system' as
the 'this' identifier.
[essential-services]: Adjust accordingly.
2019-03-30 11:08:39 +01:00
adb6462c4c
packages: Define 'this-package' and 'this-origin'.
...
* guix/packages.scm (<origin>): Choose 'this-origin' as the 'this'
identifier.
(<package>): Choose 'this-package'.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use 'this-package'
instead of 'this-record'.
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
2019-03-30 11:08:39 +01:00
ec12e53736
gnu: Add r-xcms.
...
* gnu/packages/bioconductor.scm (r-xcms): New variable.
2019-03-30 08:55:46 +01:00
c8310056f4
gnu: Add r-massspecwavelet.
...
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
2019-03-30 08:55:46 +01:00
50d9177051
gnu: Add r-xbseq.
...
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
2019-03-30 08:55:46 +01:00
a6e1eb1a96
gnu: Add r-roar.
...
* gnu/packages/bioconductor.scm (r-roar): New variable.
2019-03-30 08:55:46 +01:00
98a2af31a8
gnu: Add r-yarn.
...
* gnu/packages/bioconductor.scm (r-yarn): New variable.
2019-03-30 08:55:45 +01:00
59cf26292f
gnu: Add r-quantro.
...
* gnu/packages/bioconductor.scm (r-quantro): New variable.
2019-03-30 08:55:45 +01:00
8d1990d495
gnu: Add r-downloader.
...
* gnu/packages/cran.scm (r-downloader): New variable.
2019-03-30 08:55:45 +01:00
f562c90aa8
gnu: Add r-yaqcaffy.
...
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
2019-03-30 08:55:45 +01:00
4675b3cfa3
gnu: Add r-simpleaffy.
...
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
2019-03-30 08:55:45 +01:00
e99380d67b
gnu: Add r-gcrma.
...
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
2019-03-30 08:55:45 +01:00
303f2ed1c6
gnu: Add r-yapsa.
...
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
2019-03-30 08:55:45 +01:00
28098414d0
gnu: Add r-somaticsignatures.
...
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
2019-03-30 08:55:45 +01:00
398c4a9347
gnu: Add r-gtrellis.
...
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
2019-03-30 08:55:45 +01:00
9563dd5599
gnu: Add r-pmcmr.
...
* gnu/packages/cran.scm (r-pmcmr): New variable.
2019-03-30 08:55:45 +01:00
bc91562939
gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat.
...
Fixes <https://bugs.gnu.org/34454 >.
* gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+/fixed): New variable.
(gtk+)[replacement]: New field.
2019-03-30 02:34:24 -04:00
c948cf9092
gnu: Add font-iosevka-slab.
...
The ’slab’ variants of Iosevka were moved to a separate archive with
version 2.0.0.
* gnu/packages/fonts.scm (font-iosevka-slab): New public variable.
2019-03-29 21:09:11 +01:00
785747a974
gnu: font-iosevka: Update to 2.2.0.
...
* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0.
2019-03-29 21:00:23 +01:00
51e98f7e0f
gnu: Add r-yamss.
...
* gnu/packages/bioconductor.scm (r-yamss): New variable.
2019-03-29 19:28:11 +01:00
5cfa4bff69
gnu: Add r-ebimage.
...
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
2019-03-29 19:28:03 +01:00
ffe7029bab
gnu: Add r-aucell.
...
* gnu/packages/bioconductor.scm (r-aucell): New variable.
2019-03-29 18:10:46 +01:00
f31e10f82e
gnu: Add r-allelicimbalance.
...
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
2019-03-29 18:07:17 +01:00
adf7d8135b
gnu: Add r-annotationtools.
...
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
2019-03-29 18:05:45 +01:00
0b91b7b969
gnu: Add r-annotationfuncs.
...
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
2019-03-29 17:49:54 +01:00
9bf4bb19c9
gnu: Add r-abaenrichment.
...
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
2019-03-29 17:46:33 +01:00
3972cfce6a
gnu: Add r-gofuncr.
...
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
2019-03-29 17:46:33 +01:00
692bce1595
gnu: Add r-abadata.
...
* gnu/packages/bioconductor.scm (r-abadata): New variable.
2019-03-29 17:46:33 +01:00
1fab2cf811
gnu: Add r-mapplots.
...
* gnu/packages/cran.scm (r-mapplots): New variable.
2019-03-29 17:43:25 +01:00
32e0f906d7
gnu: Add r-atacseqqc.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
2019-03-29 17:13:45 +01:00
e5bff3079d
gnu: Add r-genomicscores.
...
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
2019-03-29 17:13:45 +01:00
2a72ef561b
gnu: Add r-motifstack.
...
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
2019-03-29 17:13:45 +01:00
229f97c37a
gnu: Add r-motiv.
...
* gnu/packages/bioconductor.scm (r-motiv): New variable.
2019-03-29 17:13:45 +01:00
051e8e1a5b
gnu: Add r-rgadem.
...
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
2019-03-29 17:13:45 +01:00
c54ab337bc
gnu: Add r-preseqr.
...
* gnu/packages/cran.scm (r-preseqr): New variable.
2019-03-29 17:13:45 +01:00
41aab7d186
gnu: Add r-bacon.
...
* gnu/packages/bioconductor.scm (r-bacon): New variable.
2019-03-29 17:13:41 +01:00
9398152ad1
gnu: php: Fix typo.
...
Regression introduced in e8cfce439a
2019-03-29 15:35:54 +01:00
8339ccac5f
gnu: python-faiss: Fix building on non-Intel architectures.
...
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom
'build-swig phase to change build flags for different archictures.
2019-03-29 17:08:05 +03:00
3776dc094c
gnu: faiss: Fix building on non-Intel architectures.
...
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel
specific headers.
[arguments]: Adjust custom 'prepare-build phase to adjust compile flags
for different architectures.
2019-03-29 17:08:02 +03:00
4774677228
gnu: stepmania: Fix all instances of accessing application data.
...
This is a follow-up to commit 45aba232ab
2019-03-29 14:14:19 +01:00
47131ebbc9
gnu: Stellarium: Update to 0.19.0.
...
* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0.
[arguments]: Remove obsolete 'patch-tests' phase.
2019-03-29 02:37:28 -04:00
45aba232ab
gnu: stepmania: Fix loading of gtk module.
...
Fixes <https://bugs.gnu.org/34854 >.
Suggested by Nicolas Goaziou.
* gnu/packages/games.scm (stepmania)[arguments]: Add phase
"ensure-gtk-module-can-be-found".
2019-03-29 07:14:17 +01:00
d656aea0ef
gnu: zynaddsubfx: Update to 3.0.4.
...
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4.
2019-03-29 06:48:13 +01:00
59d331f16a
gnu: Add r-abseqr.
...
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
2019-03-29 06:35:57 +01:00
f084e41e2c
gnu: Add r-flexdashboard.
...
* gnu/packages/cran.scm (r-flexdashboard): New variable.
2019-03-29 06:35:48 +01:00
d2aa2d2451
gnu: r-png: Move to (gnu packages cran).
...
* gnu/packages/image.scm (r-png): Move from here...
* gnu/packages/cran.scm (r-png): ...to here.
2019-03-29 06:34:39 +01:00
d8a28332c5
gnu: Add r-ggcorrplot.
...
* gnu/packages/cran.scm (r-ggcorrplot): New variable.
2019-03-29 05:39:35 +01:00
4e43e3175e
gnu: Add openclonk.
...
* gnu/packages/games.scm (openclonk): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-29 05:34:45 +01:00
e040413e0a
gnu: r-cairo: Update to 1.5-10.
...
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-10.
[inputs]: Add zlib.
2019-03-29 05:34:45 +01:00
07de94d6a4
gnu: hyperrogue: Don't use NAME in hyperrogue-data.
...
* gnu/packages/games.scm (hyperrogue)[native-inputs]: Hard code NAME in
hyperrogue-data source URI.
2019-03-29 04:07:44 +01:00
4959856443
gnu: quadrapassel: Don't use NAME in source URI.
...
* gnu/packages/games.scm (quadrapassel)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
5b35bdaaa5
gnu: libmanette: Don't use NAME in source URI.
...
* gnu/packages/games.scm (libmanette)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
98e27db5bb
gnu: frotz-dumb-terminal: Merge strings in URI.
...
* gnu/packages/games.scm (frotz-dumb-terminal)[source]: Merge separate
string components, probably from a naive ’s/name/"name"/’ substitution.
2019-03-29 04:07:44 +01:00
e2c9f9de9f
gnu: frotz: Don't use NAME in source URI.
...
* gnu/packages/games.scm (frotz)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
a6ac8e0b31
gnu: fortune-mod: Don't use NAME in source COMMIT.
...
* gnu/packages/games.scm (fortune-mod)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
30b8b2013b
gnu: lugaru: Don't use NAME in source URI.
...
* gnu/packages/games.scm (lugaru)[source]: Hard-code NAME.
2019-03-29 04:07:44 +01:00
146a4459db
gnu: no-more-secrets: Don't use unstable tarball.
...
* gnu/packages/games.scm (no-more-secrets)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 04:07:43 +01:00
a01aea7d66
gnu: hyperrogue: Don't use NAME in source URI.
...
* gnu/packages/games.scm (hyperrogue)[source]: Hard-code NAME.
2019-03-29 04:07:43 +01:00
ed9bcf50d3
gnu: mrrescue: Don't use NAME in source URI.
...
* gnu/packages/games.scm (mrrescue)[source]: Hard-code NAME.
2019-03-29 04:07:43 +01:00
22da44e8c2
gnu: laby: Don't use NAME in source URI.
...
* gnu/packages/games.scm (laby)[source]: Hard-code NAME.
2019-03-29 04:07:43 +01:00
e9d4409bab
gnu: Add python-bbknn.
...
* gnu/packages/bioinformatics.scm (python-bbknn): New variable.
2019-03-29 03:55:45 +01:00
c91ecf2db4
gnu: Add python-annoy.
...
* gnu/packages/python-xyz.scm (python-annoy): New variable.
2019-03-29 03:55:45 +01:00
51a9971ccb
gnu: Add python-faiss.
...
* gnu/packages/graph.scm (python-faiss): New variable.
2019-03-29 03:55:45 +01:00
3e40318772
gnu: Add faiss.
...
* gnu/packages/graph.scm (faiss): New variable.
2019-03-29 03:55:45 +01:00
631b20f90b
gnu: red-eclipse: Use GIT-FETCH for data sources.
...
* gnu/packages/games.scm (red-eclipse): Update DATA-SOURCE hashes.
[arguments]: COPY-RECURSIVELY instead of extracting tarballs.
[inputs]: Use GIT-FETCH and GIT-FILE-NAME for all DATA-SOURCES.
2019-03-29 04:23:02 +01:00
e464bd607a
gnu: chromium-bsu: Don't use NAME in source URI.
...
* gnu/packages/games.scm (chromium-bsu)[source]: Hard-code NAME.
2019-03-29 04:23:02 +01:00
d8f4aefed9
gnu: warzone2100: Update source URI.
...
* gnu/packages/games.scm (warzone2100)[source]: Update URI and don't
hard-code NAME.
2019-03-29 04:23:02 +01:00
c41b2ffbf2
gnu: grue-hunter: Don't use NAME in source URI.
...
* gnu/packages/games.scm (grue-hunter)[source]: Hard-code NAME.
2019-03-29 04:23:02 +01:00
bb7c071b94
gnu: red-eclipse: Don't use unstable tarball.
...
* gnu/packages/games.scm (red-eclipse)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 04:23:02 +01:00
586d30caa2
gnu: rust: Fix test setup.
...
* gnu/packages/rust.scm (rust-1.30)[arguments]<#:phases>
[disable-amd64-avx-test]: Replace.
(rust)[arguments]<#:phases>[disable-amd64-avx-test]: Replace.
2019-03-29 00:50:35 +01:00
339c1365fd
gnu: rust: Refactor in order to prepare for newer Rust versions.
...
* gnu/packages/rust.scm (rust-source): Rename to...
(rust-source-pre-1.32): ...this. Add PATCH-FLAGS.
(rust-bootstrapped-package): Rename to...
(rust-bootstrapped-package-pre-1.32): ...this.
(rust-source): New procedure.
(rust-bootstrapped-package): New procedure.
(mrustc): Use rust-bootstrapped-package-pre-1.32.
(rust-1.19): Use rust-bootstrapped-package-pre-1.32.
(rust-1.20): Use rust-bootstrapped-package-pre-1.32.
(rust-1.21): Use rust-bootstrapped-package-pre-1.32.
(rust-1.22): Use rust-bootstrapped-package-pre-1.32.
(rust-1.23): Use rust-bootstrapped-package-pre-1.32.
(rust-1.24): Use rust-bootstrapped-package-pre-1.32.
(rust-1.25): Use rust-bootstrapped-package-pre-1.32.
(rust-1.26): Use rust-bootstrapped-package-pre-1.32.
(rust-1.27): Use rust-bootstrapped-package-pre-1.32.
(rust-1.28): Use rust-bootstrapped-package-pre-1.32.
(rust-1.29): Use rust-bootstrapped-package-pre-1.32.
(rust-1.30): Use rust-bootstrapped-package-pre-1.32.
(rust): Use rust-bootstrapped-package-pre-1.32.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-29 00:50:35 +01:00
1d6c047937
gnu: powwow: Remove redundant FILE-NAME.
...
* gnu/packages/games.scm (powwow)[source]: Remove FILE-NAME.
2019-03-29 01:44:09 +01:00
2e5a0690bb
gnu: openrct2: Don't use unstable tarball.
...
* gnu/packages/games.scm (openrct2)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 01:44:09 +01:00
071782762a
gnu: fizmo: Don't use NAME in source URI.
...
* gnu/packages/games.scm (fizmo)[source]: Hard-code NAME.
2019-03-29 01:44:09 +01:00
00a82e8385
gnu: mars: Use GIT-FILE-NAME.
...
* gnu/packages/games.scm (mars)[source]: Use GIT-FILE-NAME.
2019-03-29 01:44:09 +01:00
fa3c2aad65
gnu: linux-libre: Update to 5.0.5.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.5.
(%linux-libre-hash): Update hash.
2019-03-28 19:36:22 -04:00
4bdf98f62f
gnu: linux-libre@4.19: Update to 4.19.32.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.32.
(%linux-libre-4.19-hash): Update hash.
2019-03-28 19:36:19 -04:00
8ea1d2b5bd
gnu: linux-libre@4.14: Update to 4.14.109.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.109.
(%linux-libre-4.14-hash): Update hash.
2019-03-28 19:36:17 -04:00
aa5a425c8f
gnu: linux-libre@4.9: Update to 4.9.166.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.166.
2019-03-28 19:36:14 -04:00
feb50ac6dc
gnu: l-abbaye-des-morts: Don't use unstable tarball.
...
This also fixes a build failure due to the use of NAME.
* gnu/packages/games.scm (l-abbaye-des-morts)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 00:55:01 +01:00
a8a96bbead
gnu: prboom-plus: Don't use NAME in source URI.
...
* gnu/packages/games.scm (prboom-plus)[source]: Hard-code NAME.
2019-03-29 00:50:36 +01:00
96848ecc16
gnu: pipewalker: Don't use NAME in source URI.
...
* gnu/packages/games.scm (pipewalker)[source]: Hard-code NAME.
2019-03-29 00:47:55 +01:00
a544817e80
gnu: nethack: Don't use NAME in source URI.
...
* gnu/packages/games.scm (nethack)[source]: Hard-code NAME, not VERSION.
2019-03-29 00:46:36 +01:00
dd0369f426
gnu: ltris: Don't use NAME in source URI.
...
* gnu/packages/games.scm (ltris)[source]: Hard-code NAME.
2019-03-29 00:43:05 +01:00
9303b09a78
gnu: freedoom: Re-indent.
...
* gnu/packages/games.scm (freedoom): Re-indent expression.
2019-03-29 00:42:08 +01:00
7c8ed74516
gnu: freedoom: Don't use unstable tarball.
...
* gnu/packages/games.scm (freedoom)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-29 00:39:58 +01:00
0922354d6a
gnu: cowsay: Don't use NAME in source URI.
...
* gnu/packages/games.scm (cowsay)[source]: Hard-code NAME.
2019-03-29 00:29:44 +01:00
c0c099502b
gnu: armagetron-advanced: Don't use NAME in source URI.
...
* gnu/packages/games.scm (armagetron-advanced)[source]: Hard-code NAME.
2019-03-29 00:28:49 +01:00
69a0717c66
gnu: project-starfighter: Don't use NAME in source URI.
...
* gnu/packages/games.scm (project-starfighter)[source]: Hard-code NAME.
2019-03-29 00:26:45 +01:00
357b287b8f
services: desktop: Switch to GDM.
...
* gnu/services/desktop.scm (%desktop-services): Replace
SLIM-SERVICE-TYPE instance with an instance of GDM-SERVICE-TYPE.
* doc/guix.texi (Keyboard Layout): Change example to mention
GDM-SERVICE-TYPE.
(X Window): Mention GDM.
(Desktop Services): Adjust references to SLiM.
2019-03-28 23:06:59 +01:00
971e6560eb
system: Fix typo in desktop example.
...
The typo was introduced in 391e0d65d7
2019-03-28 23:06:59 +01:00
c9711f9347
gnu: ratpoison: Provide a .desktop file with an absolute file name.
...
This allows GDM to start ratpoison. Without that GDM crashes with an
assertion failure when trying to start a ratpoison session.
* gnu/packages/ratpoison.scm (ratpoison.desktop): Remove.
(ratpoison.desktop)[arguments]: Add #:modules.
Rewrite 'install-xsession' phase such that .desktop file contains an
absolute file name.
2019-03-28 23:06:59 +01:00
f2bf0407de
packages: Reintroduce 'find-newest-available-packages'.
...
This is a followup to e2a903c807
2019-03-28 23:06:58 +01:00
e8cfce439a
gnu: php: Disable failing tests on armhf.
...
* gnu/packages/php.scm (php)[arguments]: Disable failing tests on armhf.
2019-03-28 22:59:14 +01:00
241885347a
gnu: reptyr: Enable support for aarch64-linux.
...
* gnu/packages/screen.scm (reptyr)[supported-systems]: Mark
aarch64-linux as supported.
2019-03-28 21:42:00 +02:00
d2df92e47c
gnu: Add emacs-link-hint.
...
* gnu/packages/emacs-xyz.scm (emacs-link-hint): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-28 21:31:43 +03:00
40d59c4e22
gnu: dropbear: Don't use unstable tarball.
...
* gnu/packages/screen.scm (dropbear)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-28 20:19:28 +01:00
cf9ab49e97
gnu: dropbear: Update to 2019.78.
...
* gnu/packages/ssh.scm (dropbear): Update to 2019.78.
2019-03-28 20:19:28 +01:00
01307bba9c
gnu: reptyr: Update to 0.7.0.
...
* gnu/packages/screen.scm (reptyr): Update to 0.7.0.
[source]: Remove patch.
[arguments]: Add bash completion directory name.
* gnu/packages/patches/reptyr-fix-gcc-7.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-03-28 20:19:28 +01:00
6da31b3c7b
gnu: dvdisaster: Use archived source and home page.
...
* gnu/packages/cdrom.scm (dvdisaster)[source, home-page]:
Use archive.org mirror.
2019-03-28 20:19:28 +01:00
29e3fd3424
gnu: emacs-dired-hacks: Update to 0.0.1-1.2c12345.
...
* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-1.2c12345.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-28 21:09:10 +03:00
642b195a70
gnu: gzdoom: Limit supported architectures.
...
* gnu/packages/games.scm (gzdoom)[supported-systems]: New field.
2019-03-28 19:58:35 +02:00
84ad024e2d
gnu: Add r-a4.
...
* gnu/packages/bioconductor.scm (r-a4): New variable.
2019-03-28 18:23:23 +01:00
dbfe337586
gnu: Add r-a4base.
...
* gnu/packages/bioconductor.scm (r-a4base): New variable.
2019-03-28 18:23:23 +01:00
8e15f86139
gnu: Add r-a4reporting.
...
* gnu/packages/bioconductor.scm (r-a4reporting): New variable.
2019-03-28 18:23:23 +01:00
b8d13e2c0e
gnu: Add r-a4preproc.
...
* gnu/packages/bioconductor.scm (r-a4preproc): New variable.
2019-03-28 18:23:23 +01:00
9ae37581e0
gnu: Add r-a4classif.
...
* gnu/packages/bioconductor.scm (r-a4classif): New variable.
2019-03-28 18:23:23 +01:00
0ec0a5ecc9
gnu: Add r-a4core.
...
* gnu/packages/bioconductor.scm (r-a4core): New variable.
2019-03-28 18:23:23 +01:00
a793e88c5e
gnu: Add r-annaffy.
...
* gnu/packages/bioconductor.scm (r-annaffy): New variable.
2019-03-28 18:23:23 +01:00
ce77562a9e
gnu: Add r-mlinterfaces.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): New variable.
2019-03-28 18:23:23 +01:00
409a13fe76
gnu: Add r-mpm.
...
* gnu/packages/cran.scm (r-mpm): New variable.
2019-03-28 18:23:23 +01:00
74cada8ef1
gnu: Add r-mlbench.
...
* gnu/packages/cran.scm (r-mlbench): New variable.
2019-03-28 18:23:22 +01:00
efba56139a
gnu: Add r-threejs.
...
* gnu/packages/cran.scm (r-threejs): New variable.
2019-03-28 18:23:22 +01:00
d59df3340b
gnu: Add r-gbm.
...
* gnu/packages/cran.scm (r-gbm): New variable.
2019-03-28 18:23:22 +01:00
8473597f80
gnu: Add r-ggvis.
...
* gnu/packages/cran.scm (r-ggvis): New variable.
2019-03-28 18:23:22 +01:00
fe3fb4e7ef
gnu: Add r-rda.
...
* gnu/packages/cran.scm (r-rda): New variable.
2019-03-28 18:23:22 +01:00
aae0b86d35
gnu: Add r-pamr.
...
* gnu/packages/cran.scm (r-pamr): New variable.
2019-03-28 18:23:22 +01:00
1c0c4b544d
gnu: Add r-varselrf.
...
* gnu/packages/cran.scm (r-varselrf): New variable.
2019-03-28 18:23:22 +01:00
1aa662b309
gnu: ogre: Don't use unstable tarball.
...
* gnu/packages/graphics.scm (ogre)[source]: Download using git-fetch.
2019-03-28 12:14:22 +02:00
d5640c587f
gnu: googletest: Don't use unstable tarball.
...
* gnu/packages/check.scm (googletest)[source]: Download using git-fetch.
* gnu/packages/crypto.scm (encfs)[arguments]: Adjust accordingly.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Same.
* gnu/packages/terminals.scm (eternalterminal)[arguments]: Same.
* gnu/packages/graphics.scm (ogre)[arguments]: Same. Remove now
unnecessary custom 'pre-build phase.
2019-03-28 12:14:15 +02:00
d98fb5603b
gnu: hpcguix-web: Fix indentation.
...
* gnu/packages/web.scm (hpcguix-web): Fix indentation.
2019-03-27 23:11:20 +01:00
d8de2c01ff
gnu: emacs-emmet-mode: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode)[source]: Download using
git-fetch.
2019-03-27 23:05:08 +02:00
0f8ff55513
gnu: emacs-tablist: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-tablist)[source]: Download using
git-fetch.
2019-03-27 23:05:07 +02:00
b762dde997
gnu: emacs-mmm-mode: Update to 0.5.7.
...
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.7.
2019-03-27 23:05:07 +02:00
d3f6617b26
gnu: emacs-mmm-mode: Remove unnecessary phase.
...
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[arguments]: Remove
unnecessary 'autogen phase.
2019-03-27 23:05:07 +02:00
8cd07b72e9
gnu: emacs-mmm-mode: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[source]: Don't use
unstable tarball.
2019-03-27 23:05:07 +02:00
49464d2b16
gnu: emacs-google-maps: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-google-maps)[source]: Download using
git-fetch.
2019-03-27 23:05:06 +02:00
2c19ff18e2
gnu: emacs-direnv: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-direnv)[source]: Download using
git-fetch.
2019-03-27 23:05:06 +02:00
39a46a1f10
gnu: emacs-calfw: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-calfw)[source]: Download using
git-fetch.
2019-03-27 23:05:06 +02:00
b4f96f3b3b
gnu: emacs-autothemer: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[source]: Download using
git-fetch.
2019-03-27 23:05:05 +02:00
3cf9a85ba7
gnu: emacs-ag: Don't use unstable tarball.
...
* gnu/packages/emacs-xyz.scm (emacs-ag)[source]: Download using
git-fetch.
2019-03-27 23:05:02 +02:00
c6abe90478
gnu: font-open-dyslexic: Don't use unstable tarball.
...
* gnu/packages/fonts.scm (font-open-dyslexic)[source]: Download using
git-fetch.
2019-03-27 22:25:17 +02:00
1e90e4b0d9
gnu: font-google-material-design-icons: Don't use unstable tarball.
...
* gnu/packages/fonts.scm (font-google-material-design-icons)[source]:
Download using git-fetch.
2019-03-27 22:25:17 +02:00
1f07550c86
gnu: font-tamzen: Don't use unstable tarball.
...
* gnu/packages/fonts.scm (font-tamzen)[source]: Download using
git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
2019-03-27 22:25:16 +02:00
c2426dbddc
gnu: font-fira-sans: Don't use unstable tarball.
...
* gnu/packages/fonts.scm (font-fira-sans)[source]: Download using
git-fetch.
2019-03-27 22:25:16 +02:00
8f4dccf75d
gnu: font-adobe-source-han-sans: Don't use unstable tarball.
...
* gnu/packages/fonts.scm (font-adobe-source-han-sans)[source]: Download
using git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
2019-03-27 22:25:13 +02:00
3d17dc5d8f
gnu: r-geometry: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-geometry): Update to 0.4.1.
[propagated-inputs]: Fix typo.
2019-03-27 21:00:28 +01:00
1d7022f706
gnu: r-feather: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-feather): Update to 0.3.3.
2019-03-27 21:00:28 +01:00
24540c310f
gnu: Add emacs-relint.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): New variable.
2019-03-27 20:41:29 +01:00
c881ed8698
gnu: Add emacs-zones.
...
* gnu/packages/emacs-xyz.scm (emacs-zones): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-27 22:18:32 +03:00
f8295ee6de
gnu: Add r-clusterprofiler.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
2019-03-27 16:17:20 +01:00
9c30cf65d2
gnu: Add r-enrichplot.
...
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
2019-03-27 16:17:20 +01:00
305050b56d
gnu: Add r-dose.
...
* gnu/packages/bioconductor.scm (r-dose): New variable.
2019-03-27 16:17:20 +01:00
11f226e124
gnu: Add r-ggraph.
...
* gnu/packages/cran.scm (r-ggraph): New variable.
2019-03-27 16:17:19 +01:00
b5b0a2ff49
gnu: Add r-europepmc.
...
* gnu/packages/cran.scm (r-europepmc): New variable.
2019-03-27 16:17:19 +01:00
83f43284c3
gnu: Add r-ggforce.
...
* gnu/packages/cran.scm (r-ggforce): New variable.
2019-03-27 16:17:19 +01:00
d4ff09af0d
gnu: Add r-urltools.
...
* gnu/packages/cran.scm (r-urltools): New variable.
2019-03-27 16:17:19 +01:00
09dde7fb01
gnu: Add r-polyclip.
...
* gnu/packages/cran.scm (r-polyclip): New variable.
2019-03-27 16:17:19 +01:00
91e06bedf8
gnu: Add r-tweenr.
...
* gnu/packages/cran.scm (r-tweenr): New variable.
2019-03-27 16:17:19 +01:00
85431ca3a8
gnu: Add r-triebeard.
...
* gnu/packages/cran.scm (r-triebeard): New variable.
2019-03-27 16:17:19 +01:00
e25828839d
gnu: Add r-ggplotify.
...
* gnu/packages/cran.scm (r-ggplotify): New variable.
2019-03-27 16:17:19 +01:00
1c59ec707e
gnu: Add r-farver.
...
* gnu/packages/cran.scm (r-farver): New variable.
2019-03-27 16:17:19 +01:00
585d5ae0fb
gnu: Add r-gridgraphics.
...
* gnu/packages/cran.scm (r-gridgraphics): New variable.
2019-03-27 16:17:19 +01:00
f8a5af4653
gnu: Add r-do-db.
...
* gnu/packages/bioconductor.scm (r-do-db): New variable.
2019-03-27 16:17:19 +01:00
af26c7ae70
gnu: Add r-fgsea.
...
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
2019-03-27 16:17:19 +01:00
0d50d0df08
gnu: Add r-msigdbr.
...
* gnu/packages/cran.scm (r-msigdbr): New variable.
2019-03-27 16:17:19 +01:00
2d70460892
gnu: Add r-xkcd.
...
* gnu/packages/cran.scm (r-xkcd): New variable.
2019-03-27 16:17:19 +01:00
2331bf2a64
gnu: Add r-extrafont.
...
* gnu/packages/cran.scm (r-extrafont): New variable.
2019-03-27 16:17:18 +01:00
b6933ea634
gnu: Add r-extrafontdb.
...
* gnu/packages/cran.scm (r-extrafontdb): New variable.
2019-03-27 16:17:18 +01:00
81df4e1e98
gnu: Add r-rttf2pt1.
...
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
2019-03-27 16:17:18 +01:00
06013a45aa
gnu: emacs-debbugs: Update to 0.17.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
2019-03-27 14:59:42 +01:00
18c51cf3d3
gnu: Add r-xyz.
...
* gnu/packages/cran.scm (r-xyz): New variable.
2019-03-27 14:43:26 +01:00
45c0d1d790
vm: Ask QEMU for more RAM in the VM that makes ISO9660 images.
...
* gnu/system/vm.scm (iso9660-image): Pass #:memory-size to
'expression->derivation-in-linux-vm'.
2019-03-27 11:54:06 +01:00
391e0d65d7
services: Deprecate 'xfce-desktop-service'.
...
* gnu/services/desktop.scm (xfce-desktop-service-type)[default-value]
[description]: New fields.
(xfce-desktop-service): Deprecate.
* gnu/system/examples/desktop.tmpl: Use the (service …) form.
* gnu/installer/services.scm (%desktop-environments): Add TODO comment.
* doc/guix.texi (Desktop Services): Adjust accordingly, and fix spelling
of "Xfce" throughout.
2019-03-27 11:54:06 +01:00
ee05cc7fe3
services: Deprecate 'gnome-desktop-service'.
...
* gnu/services/desktop.scm (gnome-desktop-service-type)[default-value]:
New field.
(gnome-desktop-service): Deprecate.
* gnu/installer/services.scm (%desktop-environments): Use the (service …)
form for GNOME.
* gnu/system/examples/desktop.tmpl: Likewise.
* doc/guix.texi (Desktop Services): Adjust accordingly.
2019-03-27 11:54:06 +01:00
1c155ec76b
installer: Use the (service …) form for MATE.
...
* gnu/installer/services.scm (%desktop-environments): Use
'mate-desktop-service-type' for MATE.
2019-03-27 11:54:05 +01:00
c73e554c3f
installer: Ask for confirmation before formatting partitions.
...
* gnu/installer/newt/page.scm (run-confirmation-page): New procedure.
* gnu/installer/newt/partition.scm (draw-formatting-page): Call it.
2019-03-27 11:54:05 +01:00
50247be5f4
installer: Produce an 'initrd-modules' field if needed.
...
* gnu/installer/parted.scm (root-user-partition?): New procedure.
(bootloader-configuration): Use it.
(user-partition-missing-modules, initrd-configuration): New procedures.
(user-partitions->configuration): Call 'initrd-configuration'.o
* gnu/installer.scm (not-config?): Rename to...
(module-to-import?): ... this. Add cases to exclude non-installer and
non-build (gnu …) modules.
(installer-program)[installer-builder]: Add GUIX to the extension list.
2019-03-27 11:54:05 +01:00
54043bf23f
installer: Emit 'bootloader' field before 'swap-devices'.
...
* gnu/installer/parted.scm (user-partitions->configuration): Move
'bootloader' section above 'swap-devices'.
2019-03-27 11:54:05 +01:00
37099f5844
gnu: Add emacs-webfeeder.
...
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
2019-03-27 11:33:09 +01:00
58d8225ddb
gnu: trim-galore: Add pigz.
...
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
2019-03-27 11:32:08 +01:00
5f1e31094d
gnu: trim-galore: Fix test for Python.
...
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
2019-03-27 11:28:38 +01:00
2a509880d4
gnu: hdf-java: Adjust indentation.
...
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
2019-03-27 10:47:34 +01:00
64dc8b0bfd
gnu: hdf-java: Fix build.
...
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
2019-03-27 10:13:46 +01:00
9286c0f7e8
gnu: hdf-java: Use INVOKE.
...
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
2019-03-27 10:12:57 +01:00
dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
2019-03-27 09:33:50 +01:00
3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
2019-03-27 09:33:50 +01:00
a12c527d3c
gnu: r-hdf5r: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
2019-03-27 09:33:50 +01:00
a7332d1a2f
gnu: r-caret: Update to 6.0-82.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
2019-03-27 09:33:50 +01:00
733b3c59da
gnu: r-gtable: Update to 0.3.0.
...
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
2019-03-27 09:33:50 +01:00
fc64504f2d
gnu: grantlee: Delete broken tests.
...
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
2019-03-27 09:33:50 +01:00
4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl.
...
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
2019-03-26 20:59:15 -04:00
4dcf221c85
gnu: qjackctl: Re-enable xunique.
...
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.
See d54a1da43f/ChangeLog (L9)
2019-03-27 00:09:38 +01:00
dd2f0cdba1
gnu: python-django-overextends: Use INVOKE.
...
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
2019-03-27 00:04:07 +01:00
de6be02379
gnu: python-django-contact-form: Use INVOKE.
...
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
2019-03-27 00:03:31 +01:00
7cdc7e579b
gnu: fritzing: Update to 0.9.3b.
...
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
2019-03-26 23:58:33 +01:00
68631e037b
gnu: ldc: Use INVOKE.
...
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE.
...
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
2019-03-26 23:13:54 +01:00
27cd31e6a5
gnu: open-adventure: Use INVOKE.
...
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
7b67bb1fab
gnu: 0ad: Use INVOKE.
...
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
2019-03-26 23:13:51 +01:00
c771b799bd
gnu: Add jami-client-gnome.
...
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
2019-03-26 19:17:01 +01:00
b630967247
gnu: Add libringclient.
...
* gnu/packages/telephony.scm (libringclient): New variable.
2019-03-26 19:17:01 +01:00
1bfcb19bc3
gnu: Add libring.
...
* gnu/packages/telephony.scm (libring): New variable.
2019-03-26 19:17:01 +01:00
915829e662
gnu: Add pjproject-jami.
...
* gnu/packages/telephony.scm (pjproject-jami): New variable.
2019-03-26 19:17:01 +01:00
bd4b6f4164
gnu: Add pjproject.
...
* gnu/packages/telephony.scm (pjproject): New variable.
2019-03-26 19:17:01 +01:00
863519f660
gnu: current-guix: Delay effectful bits.
...
* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'.
2019-03-26 18:11:52 +01:00
28d32817d8
gnu: python-scanpy: Update to 1.4.
...
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.
[source]: Fetch from git.
[arguments]: Disable broken tests.
[native-inputs]: Add python-pytest.
[home-page]: Use HTTPS.
2019-03-26 18:06:35 +01:00
8c9372c124
gnu: python-anndata: Update to 0.6.18.
...
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.6.18.
2019-03-26 17:13:13 +01:00
fdc316f374
gnu: trim-galore: Update to 0.6.1.
...
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
2019-03-26 16:40:42 +01:00
9ac17c6242
gnu: cutadapt: Update to 2.1.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
2019-03-26 16:40:42 +01:00
24d6498972
gnu: python-xopen: Update to 0.5.0.
...
* gnu/packages/python-xyz.scm (python-xopen): Update to 0.5.0.
2019-03-26 16:40:42 +01:00
f95e33a7ad
gnu: edgar: Rename package to the-legend-of-edgar.
...
* gnu/packages/games.scm (edgar): Define in terms of
'deprecated-package'.
(the-legend-of-edgar): New variable, formerly known as "edgar".
2019-03-26 13:44:01 +01:00
b1aee9fce2
gnu: btanks: Rename package to battle-tanks.
...
* gnu/packages/games.scm (btanks): Define in terms of
'deprecated-package'.
(battle-tanks): New variable, formerly known as "btanks".
2019-03-26 13:44:00 +01:00
f6a21d61de
gnu: tome4: Rename package to tales-of-maj-eyal.
...
* gnu/packages/games.scm (tome4): Define in terms of
'deprecated-package'.
(tales-of-maj-eyal): New variable, formerly known as "tome4".
2019-03-26 13:44:00 +01:00
24a67aef2a
gnu: crawl-tiles: Rename package to dungeon-crawl-stone-soup-tiles.
...
* gnu/packages/games.scm (crawl-tiles): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup-tiles): New variable, formerly known as "crawl-tiles".
2019-03-26 13:44:00 +01:00
36a0b5b48c
gnu: crawl: Rename package to dungeon-crawl-stone-soup.
...
* gnu/packages/games.scm (crawl): Define in terms of
'deprecated-package'.
(dungeon-crawl-stone-soup): New variable, formerly known as "crawl".
2019-03-26 13:44:00 +01:00
8b6e2bc15f
gnu: fillets-ng: Rename package to fish-fillets-ng.
...
* gnu/packages/games.scm (fillets-ng): Define in terms of
'deprecated-package'.
(fish-fillets-ng): New variable, formerly known as "fillets-ng".
2019-03-26 13:44:00 +01:00
6639295f2f
gnu: kiki: Rename package to kiki-the-nano-bot.
...
* gnu/packages/games.scm (kiki): Define in terms of
'deprecated-package'.
(kiki-the-nano-bot): New variable, formerly known as "kiki".
2019-03-26 13:44:00 +01:00
184f5c8db1
gnu: starfighter: Rename package to project-starfighter.
...
* gnu/packages/games.scm (starfighter): Define in terms of
'deprecated-package'.
(project-starfighter): New variable, formerly known as "starfighter".
2019-03-26 13:44:00 +01:00
ecdb1348ad
gnu: wesnoth-server: Rename package to the-battle-for-wesnoth-server.
...
* gnu/packages/games.scm (wesnoth-server): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth-server): New variable, formerly known as "wesnoth-server".
2019-03-26 13:44:00 +01:00
375cb94130
gnu: wesnoth: Rename package to the-battle-for-wesnoth.
...
* gnu/packages/games.scm (wesnoth): Define in terms of
'deprecated-package'.
(the-battle-for-wesnoth): New variable, formerly known as "wesnoth".
2019-03-26 13:44:00 +01:00
c91ed484d0
gnu: abbaye: Rename package to l-abbaye-des-morts.
...
* gnu/packages/games.scm (abbaye): Define in terms of
'deprecated-package'.
(l-abbaye-des-morts): New variable, formerly known as "abbaye".
2019-03-26 13:44:00 +01:00
c97e4d8bbe
gnu: gnubg: Rename package to gnubackgammon.
...
* gnu/packages/games.scm (gnubg): Define in terms of
'deprecated-package'.
(gnubackgammon): New variable, formerly known as "gnubg".
2019-03-26 13:44:00 +01:00
973bd8a62c
gnu: cataclysm-dda: Rename package to cataclysm-dark-days-ahead.
...
* gnu/packages/games.scm (cataclysm-dda): Define in terms of
'deprecated-package'.
(cataclysm-dark-days-ahead): New variable, formerly known as "cataclysm-dda".
2019-03-26 13:44:00 +01:00
df42e0f9c9
gnu: armagetronad: Rename package to armagetron-advanced.
...
* gnu/packages/games.scm (armagetronad): Define in terms of
'deprecated-package'.
(armagetron-advanced): New variable, formerly known as "armagetronad".
2019-03-26 13:44:00 +01:00
ceab612374
gnu: docker: Use disjunct temp directories for probing.
...
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Use disjunct temp
directories for probing.
2019-03-26 12:23:36 +01:00
5e00dcc89e
gnu: docker: Add comment.
...
* gnu/packages/patches/docker-use-fewer-modprobes.patch: Add comment.
2019-03-26 12:23:36 +01:00
e6301fb76d
packages: Adjust to new calling convention for "thunked" fields.
...
Fixes <https://bugs.gnu.org/34995 >.
This is a followup to abd4d6b33d
2019-03-26 10:26:02 +01:00
6c177f6140
gnu: gzdoom: Update to 3.7.2.
...
* gnu/packages/games.scm (gzdoom): Update to 3.7.2.
[source](uri): Update path.
[source](snippet): Bundled libjpeg directory has been renamed.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-03-25 21:26:43 -04:00
69cae3d335
system: Add 'essential-services' field to <operating-system>.
...
* gnu/system.scm (<operating-system>)[essential-services]: New field.
(operating-system-directory-base-entries): Remove #:container? keyword
and keep only the not-container branch.
(essential-services): Likewise.
(operating-system-services): Likewise, and call
'operating-system-essential-services' instead of 'essential-services'.
(operating-system-activation-script): Remove #:container?.
(operating-system-boot-script): Likewise.
(operating-system-derivation): Likewise.
* gnu/system/linux-container.scm (container-essential-services): New procedure.
(containerized-operating-system): Use it and set the
'essential-services' field.
(container-script): Remove call to 'operating-system-derivation'.
* gnu/system/vm.scm (system-docker-image): Likewise.
* doc/guix.texi (operating-system Reference): Document 'essential-services'.
2019-03-25 23:37:06 +01:00
cf848cc0a1
accounts: Add default value for the 'home-directory' field of <user-account>.
...
* gnu/system/accounts.scm (<user-account>)[home-directory]: Mark as
thunked and add a default value.
(default-home-directory): New procedure.
* doc/guix.texi (User Accounts): Remove 'home-directory' from example.
* gnu/system/examples/bare-bones.tmpl: Likewise.
* gnu/system/examples/beaglebone-black.tmpl: Likewise.
* gnu/system/examples/desktop.tmpl: Likewise.
* gnu/system/examples/docker-image.tmpl: Likewise.
* gnu/system/examples/lightweight-desktop.tmpl: Likewise.
* gnu/system/install.scm (installation-os): Likewise.
* gnu/tests.scm (%simple-os): Likewise.
* gnu/tests/install.scm (%minimal-os, %minimal-os-on-vda):
(%separate-home-os, %encrypted-root-os, %btrfs-root-os): Likewise.
* tests/accounts.scm ("allocate-passwd")
("allocate-passwd with previous state"): Likewise.
2019-03-25 23:37:06 +01:00
3191b5f6ba
installer: Set the system's 'keyboard-layout' field.
...
* gnu/installer/newt/keymap.scm (keyboard-layout->configuration): New
procedure.
* gnu/installer.scm (compute-keymap-step): Return RESULT.
(installer-steps) <'keymap>: Add 'configuration-formatter' field.
(installer-program): Use (gnu installer newt keymap).
* gnu/installer/parted.scm (bootloader-configuration): Set
'keyboard-layout'.
2019-03-25 23:37:05 +01:00
cde08a5120
gnu: guix: Update to f970946.
...
* gnu/packages/package-management.scm (guix): Update to f970946
2019-03-25 23:37:05 +01:00
516f6f55eb
gnu: docker: Use fewer modprobes.
...
Fixes <https://bugs.gnu.org/34333 >.
Reported by Allan Adair <allan@adair.io>.
* gnu/packages/patches/docker-use-fewer-modprobes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docker.scm (docker)[source]: Use it.
2019-03-25 20:27:57 +01:00
cdfb69b46a
gnu: nano: Update to 4.0.
...
* gnu/packages/nano.scm (nano): Update to 4.0.
2019-03-25 15:02:59 -04:00
b283d5f630
services: SDDM: Specify absolute path to the X server.
...
I'm not sure how this service ever worked, but SDDM started consistently
failing on one machine seemingly because of this setting.
* gnu/services/sddm.scm (sddm-configuration-file): Append /bin/X to the
ServerPath setting.
2019-03-25 19:24:22 +01:00
b9b177b317
gnu: Add r-svmisc.
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* gnu/packages/cran.scm (r-svmisc): New variable.
2019-03-25 17:20:14 +01:00
3f6e6e9857
gnu: Add r-rjava.
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* gnu/packages/cran.scm (r-rjava): New variable.
2019-03-25 17:19:47 +01:00
4f8b1fb35f
gnu: Add r-r2html.
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* gnu/packages/cran.scm (r-r2html): New variable.
2019-03-25 16:29:03 +01:00
7166b77adc
gnu: Add r-sampling.
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* gnu/packages/cran.scm (r-sampling): New variable.
2019-03-25 16:28:38 +01:00
6bdce94f43
gnu: r-gsl: Update to 2.1-6.
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* gnu/packages/cran.scm (r-gsl): Update to 2.1-6.
2019-03-25 16:28:20 +01:00
a6d867fed9
gnu: Add r-sigpathway.
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* gnu/packages/bioconductor.scm (r-sigpathway): New variable.
2019-03-25 16:20:04 +01:00
9d0f794229
gnu: Add r-anota.
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* gnu/packages/bioconductor.scm (r-anota): New variable.
2019-03-25 16:20:00 +01:00
c04f230eb3
gnu: Add r-gosemsim.
...
* gnu/packages/bioconductor.scm (r-gosemsim): New variable.
2019-03-25 16:19:52 +01:00
3e41919d51
gnu: Add r-heatplus.
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* gnu/packages/bioconductor.scm (r-heatplus): New variable.
2019-03-25 16:19:40 +01:00
c538bcdd38
gnu: Add r-varianttools.
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* gnu/packages/bioconductor.scm (r-varianttools): New variable.
2019-03-25 16:09:16 +01:00
8a5460b4fb
gnu: Add r-triform.
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* gnu/packages/bioconductor.scm (r-triform): New variable.
2019-03-25 16:09:07 +01:00
3080b81af6
gnu: Add r-hapassoc.
...
* gnu/packages/cran.scm (r-hapassoc): New variable.
2019-03-25 16:02:15 +01:00
a0583c0d13
gnu: Add r-hierfstat.
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* gnu/packages/cran.scm (r-hierfstat): New variable.
2019-03-25 15:58:38 +01:00
ab7f1eb97a
gnu: Add brightnessctl.
...
* gnu/packages/linux.scm (brightnessctl): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-25 15:21:15 +01:00
80eb01c776
gnu: r-gkmsvm: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here...
* gnu/packages/bioconductor.scm (r-gkmsvm): ...to here.
2019-03-25 14:34:41 +01:00
bac0ca322c
gnu: r-kernlab: Move to (gnu packages cran).
...
* gnu/packages/machine-learning.scm (r-kernlab): Move from here...
* gnu/packages/cran.scm (r-kernlab): ...to here.
2019-03-25 14:33:02 +01:00
c5a2b518ad
gnu: r-wgcna: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-wgcna): Move from here...
* gnu/packages/cran.scm (r-wgcna): ...to here.
2019-03-25 14:05:09 +01:00
72a216a9d0
gnu: r-optparse: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-optparse): Move from here...
* gnu/packages/cran.scm (r-optparse): ...to here.
2019-03-25 14:04:19 +01:00
0ef062b338
gnu: r-bookdown: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-bookdown): Move from here...
* gnu/packages/cran.scm (r-bookdown): ...to here.
2019-03-25 14:03:21 +01:00
469fb43891
gnu: r-sparql: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-sparql): Move from here...
* gnu/packages/cran.scm (r-sparql): ...to here.
2019-03-25 14:01:56 +01:00
7cd4ff2f0c
gnu: Add r-tdthap.
...
* gnu/packages/cran.scm (r-tdthap): New variable.
2019-03-25 14:00:32 +01:00
b8fea3c859
gnu: Add r-hwde.
...
* gnu/packages/cran.scm (r-hwde): New variable.
2019-03-25 14:00:32 +01:00
1cdd9f0e8a
gnu: Add r-ldheatmap.
...
* gnu/packages/cran.scm (r-ldheatmap): New variable.
2019-03-25 14:00:32 +01:00
d4a255a484
gnu: Add r-dlmap.
...
* gnu/packages/cran.scm (r-dlmap): New variable.
2019-03-25 14:00:32 +01:00
73fcd22244
gnu: Add r-ibdreg.
...
* gnu/packages/cran.scm (r-ibdreg): New variable.
2019-03-25 14:00:31 +01:00
bffb58269f
gnu: Add r-bqtl.
...
* gnu/packages/cran.scm (r-bqtl): New variable.
2019-03-25 14:00:31 +01:00
c3b5c803f0
gnu: perl-svg: Update source URL.
...
* gnu/packages/perl.scm (perl-svg)[source]: Update URL.
2019-03-25 14:11:03 +01:00
034eae9c12
gnu: perl-class-date: Update source URL.
...
* gnu/packages/perl.scm (perl-class-date)[source]: Update URL.
2019-03-25 14:11:03 +01:00
587f764e2a
gnu: perl-mouse: Update source URL.
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* gnu/packages/perl.scm (perl-mouse)[source]: Update URL.
2019-03-25 14:11:02 +01:00
2db3b2d303
gnu: perl-carp: Update source URL.
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* gnu/packages/perl.scm (perl-carp)[source]: Update URL.
2019-03-25 14:11:02 +01:00
a4876fbe17
gnu: perl-class-accessor-grouped: Update source URL.
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* gnu/packages/perl.scm (perl-class-accessor-grouped)[source]:
Update URL.
2019-03-25 14:10:45 +01:00
a7da90936f
gnu: perl-base: Update source URL.
...
* gnu/packages/perl.scm (perl-base)[source]: Update URL.
2019-03-25 13:34:59 +01:00
83617aec58
gnu: perl-datetime-calendar-julian: Update source URL.
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* gnu/packages/perl.scm (perl-datetime-calendar-julian)[source]: Update URL.
2019-03-25 13:31:29 +01:00
ae61388fb5
gnu: perl-carp-clan: Update source URL.
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* gnu/packages/perl.scm (perl-carp-clan)[source]: Update URL.
2019-03-25 13:27:48 +01:00
e68f20502c
gnu: perl-class-c3-componentised: Update source URL.
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* gnu/packages/perl.scm (perl-class-c3-componentised)[source]:
Update URL.
2019-03-25 13:18:35 +01:00
5ca9cb1e17
gnu: perl-plack-test-externalserver: Update source URL.
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* gnu/packages/web.scm (perl-plack-test-externalserver)[source]:
Update URL.
2019-03-25 13:11:25 +01:00
fd9fe868f8
gnu: perl-moosex-emulate-class-accessor-fast: Update source URL.
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* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast)
[source]: Update URL.
2019-03-25 12:59:39 +01:00
357b69499a
gnu: perl-log-any: Update source URL.
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* gnu/packages/perl.scm (perl-log-any)[source]: Update URL.
2019-03-25 12:59:39 +01:00
3ed36f3153
gnu: perl-file-temp: Update source URL.
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* gnu/packages/perl.scm (perl-file-temp)[source]: Update URL.
2019-03-25 12:59:39 +01:00
799f484251
gnu: perl-object-signature: Update source URL.
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* gnu/packages/perl.scm (perl-object-signature)[source]: Update URL.
2019-03-25 12:59:39 +01:00
f970946c1d
gnu: fmt: Update to 5.3.0.
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* gnu/packages/pretty-print.scm (fmt): Update to 5.3.0.
[arguments]: Remove #:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:27 +01:00
8dc329656b
gnu: Add emacs-company-jedi.
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* gnu/packages/emacs-xyz.scm (emacs-company-jedi): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
1172d914ea
gnu: Add emacs-company-flow.
...
* gnu/packages/emacs-xyz.scm (emacs-company-flow): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
06aff73855
gnu: Add emacs-jedi.
...
* gnu/packages/emacs-xyz.scm (emacs-jedi): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
16f6a75db0
gnu: Add emacs-python-environment.
...
* gnu/packages/emacs-xyz.scm (emacs-python-environment): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
13e99cfcd8
gnu: Add emacs-prescient.
...
* gnu/packages/emacs-xyz.scm (emacs-prescient): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
5247cd2a5e
gnu: Add emacs-company-auctex.
...
* gnu/packages/emacs-xyz.scm (emacs-company-auctex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
6cd504ce75
gnu: Add emacs-company-cabal.
...
* gnu/packages/emacs-xyz.scm (emacs-company-cabal): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
bb034ab080
gnu: Add emacs-company-lsp.
...
* gnu/packages/emacs-xyz.scm (emacs-company-lsp): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
de5ea7d961
gnu: Add gPodder.
...
* gnu/packages/podcast.scm (gpodder): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:26 +01:00
b58ab1598f
gnu: Add python-mygpoclient.
...
* gnu/packages/gpodder.scm (python-mygpoclient): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-25 11:39:25 +01:00
4518a9dfa8
gnu: icecat: Update to 60.6.1-guix1 [security fixes].
...
Includes fixes for CVE-2019-9810 and CVE-2019-9813.
* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.1-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-03-25 05:23:39 -04:00
cd47dcf6a2
gnu: Add r-haplo-stats.
...
* gnu/packages/cran.scm (r-haplo-stats): New variable.
2019-03-25 10:02:03 +01:00
a8c965cfec
gnu: Add r-rms.
...
* gnu/packages/cran.scm (r-rms): New variable.
2019-03-25 10:02:03 +01:00
6a472af3f6
gnu: Add r-polspline.
...
* gnu/packages/cran.scm (r-polspline): New variable.
2019-03-25 10:02:03 +01:00
5ef7d057ed
gnu: Add r-snp-plotter.
...
* gnu/packages/cran.scm (r-snp-plotter): New variable.
2019-03-25 10:02:02 +01:00
601ddf02cc
gnu: Add r-genetics.
...
* gnu/packages/cran.scm (r-genetics): New variable.
2019-03-25 10:02:02 +01:00
33b233ba63
gnu: linux-libre: Update to 5.0.4.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.4.
(%linux-libre-hash): Update hash.
2019-03-25 01:23:04 -04:00
be6d2713d3
gnu: linux-libre@4.19: Update to 4.19.31.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.31.
(%linux-libre-4.19-hash): Update hash.
2019-03-25 01:22:06 -04:00
60b223ac51
gnu: linux-libre@4.14: Update to 4.14.108.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.108.
(%linux-libre-4.14-hash): Update hash.
2019-03-25 01:21:12 -04:00
eb69d5ddde
gnu: linux-libre@4.9: Update to 4.9.165.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.165.
2019-03-25 01:20:35 -04:00
e02b7694ec
gnu: linux-libre@4.4: Update to 4.4.177.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.177.
2019-03-25 01:19:39 -04:00
70bb83b7b2
services: xorg: Fix cases where 'keyboard-layout' is #f.
...
This is a followup to 598757e038
2019-03-25 00:21:48 +01:00
b9a57fd1b2
gnu: perl-uri-escape: Update source tarball URL.
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* gnu/packages/perl-web.scm (perl-uri-escape)[source]: Update URL.
2019-03-25 01:59:50 +03:00
8559df6406
gnu: perl6-meta6: Remove unsupported syntax from description.
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* gnu/packages/perl6.scm (perl6-meta6)[description]: Remove @quot.
2019-03-24 23:55:03 +01:00
b15d19a651
gnu: perl6-json-class: Remove unsupported syntax from description.
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* gnu/packages/perl6.scm (perl6-json-class)[description]: Remove @quot.
2019-03-24 23:54:51 +01:00
cd977b35be
gnu: Add r-rmetasim.
...
* gnu/packages/cran.scm (r-rmetasim): New variable.
2019-03-24 23:44:13 +01:00
3d2bc81751
gnu: Add r-pegas.
...
* gnu/packages/cran.scm (r-pegas): New variable.
2019-03-24 23:44:13 +01:00
91c1fbdfdd
gnu: Add r-adegenet.
...
* gnu/packages/cran.scm (r-adegenet): New variable.
2019-03-24 23:44:13 +01:00
c4d521ba2c
gnu: r-seqinr: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-seqinr): Move from here...
* gnu/packages/cran.scm (r-seqinr): ...to here.
2019-03-24 23:44:13 +01:00
49a48c496f
gnu: r-acsnminer: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-acsnminer): Move from here...
* gnu/packages/cran.scm (r-acsnminer): ...to here.
2019-03-24 23:44:13 +01:00
e371e534a7
gnu: Add r-spdep.
...
* gnu/packages/cran.scm (r-spdep): New variable.
2019-03-24 23:44:13 +01:00
Kei Kebreau