Leo Famulari
90bcecc568
gnu: jasper: Add fixes for several security flaws.
...
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
2016-02-04 15:09:41 -05:00
Mark H Weaver
5fb205c638
gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f.
...
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
2016-02-04 00:15:21 -05:00
Ludovic Courtès
240b57f0ca
guix system: 'reconfigure' loads and starts new services.
...
Partly fixes <http://bugs.gnu.org/22039 >.
* gnu/services/herd.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/services/shepherd.scm (shepherd-service-canonical-name): New
procedure.
(shepherd-service-file): Export.
* guix/scripts/system.scm (upgrade-shepherd-services): New procedure.
(switch-to-system): Use it.
* guix/ui.scm (info): New procedure.
* doc/guix.texi (Invoking guix system): Mention system services.
2016-02-03 22:28:28 +01:00
Federico Beffa
e5045f303a
gnu: Add emacs-constants.
...
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2016-02-03 10:48:36 +01:00
Federico Beffa
e037a09f1d
gnu: Add emacs-scheme-complete.
...
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
2016-02-03 10:47:21 +01:00
Mark H Weaver
fd9a5b0fc3
gnu: qemu: Update to 2.5.0; add fixes for security flaws.
...
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
gnu/packages/patches/qemu-CVE-2015-8558.patch,
gnu/packages/patches/qemu-CVE-2015-8567.patch,
gnu/packages/patches/qemu-CVE-2015-8613.patch,
gnu/packages/patches/qemu-CVE-2015-8701.patch,
gnu/packages/patches/qemu-CVE-2015-8743.patch,
gnu/packages/patches/qemu-CVE-2016-1568.patch,
gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
[source]: Remove old patches and add new ones.
[arguments]: Add 'disable-test-qga' phase.
(%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
2016-02-03 00:05:22 -05:00
Mark H Weaver
5e764e2b6f
gnu: linux-libre: Update to 4.4.1.
...
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
[source]: Remove patch.
2016-02-01 23:47:35 -05:00
Eric Bavier
e3f755f44c
gnu: Add pinball.
...
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
gnu/packages/patches/pinball-cstddef.patch,
gnu/packages/patches/pinball-missing-separators.patch,
gnu/packages/patches/pinball-src-deps.patch,
gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
2016-01-31 23:46:30 -06:00
Efraim Flashner
e5a2edeba0
gnu: perl-tk: Update to 804.033.
...
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
2016-01-31 14:36:08 +02:00
Alex Kost
0190c1c02f
Rename (gnu services dmd) to (gnu services shepherd).
...
* gnu/services/dmd.scm: Rename to...
* gnu/services/shepherd.scm: ... this.
* gnu/system.scm: Use it.
* gnu/system/install.scm: Likewise.
* gnu/services/xorg.scm: Likewise.
* gnu/services/web.scm: Likewise.
* gnu/services/ssh.scm: Likewise.
* gnu/services/networking.scm: Likewise.
* gnu/services/mail.scm: Likewise.
* gnu/services/lirc.scm: Likewise.
* gnu/services/desktop.scm: Likewise.
* gnu/services/dbus.scm: Likewise.
* gnu/services/databases.scm: Likewise.
* gnu/services/base.scm: Likewise.
* gnu/services/avahi.scm: Likewise.
* guix/scripts/system.scm: Likewise.
* tests/services.scm: Likewise.
* tests/guix-system.sh: Likewise.
* doc/guix.texi (Shepherd Services): Adjust accordingly.
* gnu-system.am (GNU_SYSTEM_MODULES): Likewise.
* po/guix/POTFILES.in: Likewise.
2016-01-29 20:21:53 +03:00
Mathieu Lirzin
8c3d889456
build: Add 'DL' silent rule.
...
* Makefile.am (AM_V_DL, AM_V_DL_, AM_V_DL_0): New variables.
* gnu-system.am (gnu/packages/bootstrap/x86_64-linux/guile-2.0.9.tar.xz)
(gnu/packages/bootstrap/i686-linux/guile-2.0.9.tar.xz)
(gnu/packages/bootstrap/armhf-linux/guile-2.0.11.tar.xz)
(gnu/packages/bootstrap/mips64el-linux/guile-2.0.9.tar.xz): Use $(AM_V_DL).
* build-aux/download.scm: Print a line break between target and origin.
2016-01-28 16:31:38 +01:00
Mark H Weaver
593c366bde
Merge branch 'core-updates'
2016-01-28 07:29:13 -05:00
Mark H Weaver
29a780147d
gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs.
...
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
gnu/packages/patches/icecat-CVE-2016-1935.patch,
gnu/packages/patches/icecat-bug-1146335-pt1.patch,
gnu/packages/patches/icecat-bug-1146335-pt2.patch,
gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
2016-01-28 00:34:20 -05:00
Efraim Flashner
cd44f1c1b0
gnu: c-ares: Move to adns.scm.
...
* gnu/packages/aria2.scm (c-ares): Move to...
* gnu/packages/adns.scm (c-ares): ... here.
* gnu/packages/aria2.scm: Remove file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove aria2.scm.
2016-01-27 14:13:45 +02:00
Mark H Weaver
412bee5e29
Merge branch 'master' into core-updates
2016-01-24 21:04:54 -05:00
Ricardo Wurmus
94ce537eac
gnu: Add TopHat.
...
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-23 08:53:10 +01:00
Mark H Weaver
86fa2ea92f
gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}.
...
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
[source]: Add patches.
2016-01-21 00:30:15 -05:00
Eric Bavier
7ed0145712
gnu: Add NQC.
...
* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20 22:06:27 -06:00
Eric Bavier
97b07aaa41
gnu: Add perl-module-pluggable.
...
This Perl module was moved out of Perl core in v5.19.0.
* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-20 17:45:31 -06:00
Mark H Weaver
beed3af565
gnu: linux-libre: Add fix for CVE-2016-0728.
...
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
2016-01-20 13:23:42 -05:00
Andreas Enge
ffc8f34511
gnu: arb: Update to 2.8.1.
...
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
2016-01-20 16:33:34 +01:00
Andreas Enge
7c853c02b8
gnu: doxygen: Update to 1.8.11.
...
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
Drop one patch.
[build-system]: Switch to cmake-build-system, since gnu-build-system
is not supported any more.
[arguments]: Adapt.
[native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
2016-01-20 13:19:48 +01:00
Mark H Weaver
afe9f40949
Merge branch 'master' into core-updates
2016-01-19 00:18:37 -05:00
Mark H Weaver
8d9bae4ed7
gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558].
...
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
[source]: Remove patch.
2016-01-15 18:03:02 -05:00
Leo Famulari
f75bbb028a
gnu: Add radicale.
...
* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15 16:45:24 -05:00
Ludovic Courtès
89b48232f8
gnu: automake: Adjust to deal with Perl 5.22.
...
Fixes <http://bugs.gnu.org/22375 >.
* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-15 14:23:46 +01:00
David Thompson
d020bfc2df
gnu: Add python-docker-py.
...
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14 09:16:22 -05:00
Ricardo Wurmus
0047d26a22
gnu: bowtie: Update to 2.2.6.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
Ludovic Courtès
76002e54f2
gnu: gawk: Protect against random failures of the 'fts' test.
...
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-14 10:43:08 +01:00
Ludovic Courtès
8c986ab120
Merge branch 'master' into core-updates
2016-01-13 18:18:48 +01:00
Eric Bavier
c91d3fb7f4
gnu: boost: Update to 1.60.0.
...
* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
Mark H Weaver
203795acea
gnu: perl: Add fix for CVE-2015-8607.
...
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
2016-01-12 13:12:07 -05:00
Mark H Weaver
16aa649117
gnu: sudo: Add fix for CVE-2015-5602.
...
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
Ben Woodcroft
9b9b7ffd8e
gnu: bedtools: Update to 2.25.0.
...
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
Leo Famulari
62339e2d49
gnu: w3m: Enable SSL, disable broken protocols and ciphers.
...
Fixes <http://bugs.gnu.org/16791 >.
* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00
Leo Famulari
e6352001c4
gnu: w3m: Update patch to use '-p1'.
...
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
2016-01-07 02:35:38 -05:00
Efraim Flashner
93b3a8b0ee
gnu: flex: Update to 2.6.0.
...
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
2016-01-07 08:42:15 +02:00
Efraim Flashner
5a75865f9d
gnu: gnutls: Update to 3.4.7.
...
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
2016-01-05 21:06:59 +02:00
Roel Janssen
a7ec569c98
gnu: Add LDC.
...
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
(dist_patch_DATA): Add patch file.
2016-01-05 16:24:57 +01:00
Ricardo Wurmus
4828ff91ff
gnu: gtk+: Add patch to support GUIX_GTK3_PATH.
...
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
2016-01-04 16:11:10 -05:00
Ricardo Wurmus
2a6afac905
gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH.
...
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
2016-01-04 16:11:10 -05:00
Ricardo Wurmus
c2e87caaa6
gnu: julia: Update to 0.4.2.
...
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
2016-01-04 11:35:57 +01:00
Ludovic Courtès
53334dd6e9
Merge branch 'master' into core-updates
2016-01-03 14:53:03 +01:00
Ludovic Courtès
1575dcd134
gnu: grep: Skip timing-sensitive test.
...
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw >.
* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
2016-01-03 14:50:29 +01:00
Eric Bavier
209778717a
gnu: Add Asymptote.
...
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-02 16:04:55 -06:00
Ludovic Courtès
e80d2555f5
gnu: findutils: Update to 4.6.0.
...
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0. Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
2016-01-01 01:05:06 +01:00
Leo Famulari
658212ebf7
gnu: Move cursynth to (gnu packages music).
...
* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
2015-12-30 21:26:05 -05:00
Leo Famulari
b7e7d1b9d3
gnu: fuse: Update to 2.9.4.
...
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
[source]: Remove patch.
2015-12-29 14:20:55 -05:00
Mark H Weaver
097190417f
gnu: icecat: Update to 38.5.0-gnu1.
...
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-7205.patch,
gnu/packages/patches/icecat-CVE-2015-7210.patch,
gnu/packages/patches/icecat-CVE-2015-7212.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7214.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
[source]: Remove patches.
2015-12-23 18:19:59 -05:00
Leo Famulari
f0150f8724
gnu: grub: Add fix for CVE-2015-8730.
...
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
2015-12-21 12:33:55 -05:00