377bd155ea
gnu: dbus: Fix CVE-2019-12749.
...
* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus/fixed): New variable.
2019-06-20 22:49:31 +02:00
28618b05f0
gnu: pigx-rnaseq: Update to 0.0.7.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7.
[inputs]: Add coreutils and sed.
2019-06-20 22:29:43 +02:00
eacf29835d
gnu: Add iml.
...
* gnu/packages/algebra.scm (iml): New variable.
2019-06-20 17:36:39 +02:00
264334716f
gnu: Add ppl.
...
* gnu/packages/maths.scm (ppl): New variable.
2019-06-20 16:46:37 +02:00
30adfd3600
gnu: ngs-sdk: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
2019-06-20 14:33:57 +02:00
20874b7044
gnu: sra-tools: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
2019-06-20 14:33:57 +02:00
7cb44fb571
gnu: ncbi-vdb: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
2019-06-20 14:33:57 +02:00
c050f18700
gnu: guile: Add 2.2.5.
...
* gnu/packages/guile.scm (guile-2.2.5): New variable.
2019-06-20 14:07:01 +02:00
becb9cbfe1
gnu: python-jupyter-console: Update to 6.0.0.
...
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0.
[arguments]: Enable tests.
[propagated-inputs]: Replace python-prompt-toolkit-1 with
python-prompt-toolkit.
2019-06-20 13:14:16 +02:00
8e590c8153
gnu: python2-jupyter-console: Split from python-jupyter-console.
...
* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without
package-with-python2.
2019-06-20 13:14:16 +02:00
e2ab228b46
Revert "gnu: Add libgd."
...
This reverts commit 059e4c9a15
2019-06-20 12:39:21 +02:00
197ebc36be
gnu: Add lrcalc.
...
* gnu/packages/algebra.scm (lrcalc): New variable.
2019-06-20 12:21:11 +02:00
66c67e7ba1
gnu: Add eclib.
...
* gnu/packages/algebra.scm (eclib): New variable.
2019-06-20 12:21:04 +02:00
6cbedbd2f2
gnu: Add m4rie.
...
* gnu/packages/algebra.scm (m4rie): New variable.
2019-06-20 12:20:11 +02:00
9553a41dbe
gnu: weechat: update to 2.5
...
* gnu/packages/irc.scm (weechat): update to 2.5
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 11:55:09 +02:00
25cbaa9e70
gnu: Add python-fpylll.
...
* gnu/packages/algebra.scm (python-fpylll): New variable.
2019-06-20 11:07:12 +02:00
1de48e8f8a
gnu: fplll: Update to 5.2.1.
...
* gnu/packages/algebra.scm (fplll): Update to 5.2.1.
[source]: Use Github tagged release: the original tarball no longer exists.
[native-inputs]: Add Autoconf and al.
[homepage]: Update it, the previous one no longer exists.
[description]: Expound description.
2019-06-20 11:03:37 +02:00
75a73bb024
gnu: Add symmetrica.
...
* gnu/packages/algebra.scm (symmetrica): New variable.
* gnu/packages/patches/symmetrica-bruch.patch:
* gnu/packages/patches/symmetrica-int32.patch:
* gnu/packages/patches/symmetrica-return_values.patch:
* gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
2019-06-20 10:19:12 +02:00
a42cb6f1f1
gnu: zathura: Install icons.
...
* gnu/packages/pdf.scm (zathura)[native-inputs]: Add librsvg to build and
install the application icons.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 10:10:31 +02:00
059e4c9a15
gnu: Add libgd.
...
* gnu/packages/image.scm (libgd): New variable.
2019-06-20 10:09:17 +02:00
ab398380eb
gnu: Move ratpoints into a different module.
...
* gnu/packages/maths.scm (ratpoints): Move...
* gnu/packages/algebra.scm: ...here.
2019-06-20 09:20:29 +02:00
5543d3bb09
gnu: spdlog: Clarify license.
...
* gnu/packages/logging.scm (spdlog): Clarify license of the bundled fmt
library.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 05:38:58 +02:00
c5c51bda0b
gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.14.3.
2019-06-20 00:28:14 +02:00
80ee7c4a48
gnu: zn_poly: Rename to zn-poly, according to our naming conventions.
...
Reported by Nicolas Goaziou <mail@nicolasgoaziou.fr>.
This is a follow-up to commit 01822e3ebf
2019-06-20 00:03:46 +02:00
a1dcaacb7b
gnu: Add brial.
...
* gnu/packages/sagemath.scm (brial): New variable.
2019-06-19 23:57:49 +02:00
37edfb0f1c
gnu: Add m4ri.
...
* gnu/packages/algebra.scm (m4ri): New variable.
2019-06-19 23:45:29 +02:00
3f9a027ce2
gnu: Add crispy-doom.
...
* gnu/packages/games.scm (crispy-doom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:28 +02:00
8785a71faf
gnu: emacs-unpackaged-el: Add patch for missing require statement.
...
* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el)[source]: Add patch.
* gnu/packages/patches/emacs-unpackaged-req.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:27 +02:00
a7a3182761
gnu: Add numix-theme.
...
* gnu/packages/gnome.scm (numix-theme): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:27 +02:00
74247b80e5
gnu: Add python-pandocfilters.
...
* gnu/packages/textutils.scm (python-pandocfilters): New variable.
2019-06-19 22:01:53 +02:00
0c842e3a59
gnu: Add ratpoints.
...
* gnu/packages/maths.scm (ratpoints): New variable.
* gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-19 21:43:12 +02:00
7c5f623192
gnu: Add gf2x.
...
* gnu/packages/algebra.scm (gf2x): New variable.
2019-06-19 18:56:55 +02:00
01822e3ebf
gnu: Add zn_poly.
...
* gnu/packages/sagemath.scm (zn_poly): New variable.
2019-06-19 18:56:55 +02:00
3923e9d942
gnu: Add pynac.
...
* gnu/packages/sagemath.scm (pynac): New variable.
2019-06-19 18:56:55 +02:00
538230c933
gnu: python-gmpy2: Update to 2.1.0b1.
...
The gmpy2 package has become a standard package in sage-8.7, and the latest
stable release is too old.
* gnu/packages/sagemath.scm (python-gmpy2): Update to 2.1.0b1.
2019-06-19 18:56:55 +02:00
f58b10cb30
gnu: balsa: Update to 2.5.7.
...
* gnu/packages/mail.scm (balsa): Update to 2.5.7.
[inputs]: Build with gtksourceview@3.
2019-06-19 17:58:48 +02:00
c8a67f13c9
gnu: nano: Update to 4.3.
...
* gnu/packages/nano.scm (nano): Update to 4.3.
2019-06-19 17:50:44 +02:00
76472ed959
gnu: notmuch: Update to 0.29.1.
...
* gnu/packages/mail.scm (notmuch): Update to 0.29.1.
2019-06-19 17:50:44 +02:00
903bc2672d
gnu: mpd: Update to 0.21.10.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.10.
2019-06-19 17:50:44 +02:00
2dcde3c733
gnu: perl-xml-sax: Update to 1.02.
...
* gnu/packages/xml.scm (perl-xml-sax): Update to 1.02.
2019-06-19 17:50:43 +02:00
1f6dd7e9c2
gnu: shadow: Update home page.
...
* gnu/packages/admin.scm (shadow)[home-page]: Update to new project home.
2019-06-19 17:50:43 +02:00
bb3dc8025a
gnu: shadow: Update to 4.7.
...
* gnu/packages/admin.scm (shadow): Update to 4.7.
2019-06-19 17:50:43 +02:00
a6dc3cc197
gnu: ansible: Update to 2.8.1.
...
* gnu/packages/admin.scm (ansible): Update to 2.8.1.
2019-06-19 17:50:43 +02:00
68c138ffce
gnu: filezilla: Update to 3.42.1.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.42.1.
2019-06-19 15:42:50 +02:00
75b803ffa9
gnu: libfilezilla: Update to 0.16.0.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.16.0.
2019-06-19 15:42:50 +02:00
f1765b57b8
gnu: Add python-keras.
...
* gnu/packages/machine-learning.scm (python-keras): New variable.
2019-06-19 15:05:45 +02:00
90afa80dd9
gnu: Add python-pytest-timeout.
...
* gnu/packages/check.scm (python-pytest-timeout): New variable.
2019-06-19 15:05:45 +02:00
4abc50666e
gnu: Add python-keras-preprocessing.
...
* gnu/packages/machine-learning.scm (python-keras-preprocessing): New variable.
2019-06-19 15:05:45 +02:00
d93ad19110
gnu: Add python-keras-applications.
...
* gnu/packages/machine-learning.scm (python-keras-applications): New variable.
2019-06-19 15:05:45 +02:00
7bcf827c1d
gnu: python-botocore: Update to 1.12.149.
...
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.12.149.
[native-inputs]: Add python-urllib3.
2019-06-19 15:05:45 +02:00
5d3675371c
gnu: python-s3transfer: Update to 0.2.0.
...
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.2.0.
[propagated-inputs]: Add python-urllib3.
2019-06-19 15:05:42 +02:00
5f7367cf84
gnu: linux-libre: Update to 5.1.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.11.
(%linux-libre-hash): Update hash.
2019-06-18 20:49:14 -04:00
999ab3807a
gnu: linux-libre@4.19: Update to 4.19.52.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.52.
(%linux-libre-4.19-hash): Update hash.
2019-06-18 20:48:29 -04:00
4862957c60
gnu: linux-libre@4.14: Update to 4.14.127.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.127.
(%linux-libre-4.14-hash): Update hash.
2019-06-18 20:47:38 -04:00
6bb60ba1ba
gnu: linux-libre@4.9: Update to 4.9.182.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.182.
2019-06-18 20:46:58 -04:00
cbc28ac133
gnu: linux-libre@4.4: Update to 4.4.182.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.182.
2019-06-18 20:46:11 -04:00
cb13618b6d
gnu: python2: Add 'cpe-name' property.
...
* gnu/packages/python.scm (python2)[properties]: New field.
2019-06-18 21:02:42 +03:00
e27ae2db00
gnu: linbox: Add version 1.5.2.
...
* gnu/packages/sagemath.scm (linbox-1.5.2): New variable.
2019-06-18 19:57:05 +02:00
9fafb0d21f
gnu: fflas-ffpack: Add version 2.3.2.
...
* gnu/packages/sagemath.scm (fflas-ffpack-2.3.2): New variable.
2019-06-18 19:57:05 +02:00
80a70da7fc
gnu: givaro: Add version 4.0.4.
...
* gnu/packages/sagemath.scm (givaro-4.0.4): New variable.
2019-06-18 19:57:05 +02:00
a612f86684
gnu: Add linbox.
...
* gnu/packages/algebra.scm (linbox): New variable.
2019-06-18 19:57:05 +02:00
4bf9cb4053
gnu: Add fflas-ffpack.
...
* gnu/packages/algebra.scm (fflas-ffpack): New variable.
2019-06-18 19:57:05 +02:00
f0fbb31d01
gnu: Add givaro.
...
* gnu/packages/algebra.scm (givaro): New variable.
2019-06-18 19:57:05 +02:00
cc908fde64
gnu: Remove hydra.
...
Our copy of hydra hasn't built in years.
* gnu/packages/ci.scm (hydra): Remove variable.
2019-06-18 20:12:42 +03:00
4088ae4270
gnu: python-on-guile: Update to 0.1.0-2.058c596.
...
* gnu/packages/guile-xyz.scm (python-on-guile): Update to 0.1.0-2.058c596.
[source]: Fetch from fork at git.elephly.net.
[arguments]: Remove phase "use-canonical-directory-for-go-files".
2019-06-18 18:23:47 +02:00
d60b064d47
gnu: Add python-iml.
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* gnu/packages/machine-learning.scm (python-iml): New variable.
2019-06-18 17:58:31 +02:00
2e8c912fdc
gnu: aircrack-ng: Update to 1.5.2.
...
* gnu/packages/networking.scm (aircrack-ng): Update to 1.5.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-18 17:01:30 +02:00
e6e2f4a08d
gnu: Add emacs-gruvbox-theme
...
* gnu/packages/emacs-xyz.scm (emacs-gruvbox-theme): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-18 16:55:01 +02:00
0c212811ac
gnu: Add python-slurm-magic.
...
* gnu/packages/parallel.scm (python-slurm-magic): New variable.
2019-06-18 16:51:22 +02:00
a32e3b9078
gnu: gemmlowp-for-tensorflow: Use SSE2.
...
* gnu/packages/machine-learning.scm (gemmlowp-for-tensorflow)[arguments]: Only
enable SSE2, not SSE4.1 on i686 and x86_64 architectures.
2019-06-18 16:02:53 +02:00
55dae98f73
gnu: Add python-matplotlib-venn.
...
* gnu/packages/python-xyz.scm (python-matplotlib-venn): New variable.
2019-06-18 14:50:52 +02:00
8b5f756ccb
gnu: python-ipython: Update to 7.5.0
...
* gnu/packages/python-xyz.scm (python2-ipython): Do not inherit from
python-ipython.
[outputs]: Remove separate "doc" output.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; rename "fix-tests" phase to
"delete-broken-tests" and adjust.
(python-ipython): Update to 7.5.0.
[outputs]: Remove separate "doc" output.
[propagated-inputs]: Add python-backcall and python-jedi; replace
python-prompt-toolkit-1 with python-prompt-toolkit.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; simplify "fix-tests" phase.
[properties]: Remove.
(python-ipython-documentation): New variable.
2019-06-18 14:22:26 +02:00
82110deadb
gnu: python-ipykernel: Update to 5.1.1.
...
* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.1.1.
2019-06-18 14:22:26 +02:00
0f3789477a
gnu: python2-ipykernel: Split from python-ipykernel.
...
* gnu/packages/python-xyz.scm (python2-ipykernel): Define without
package-with-python2.
2019-06-18 14:22:26 +02:00
dede052a2c
gnu: Add python-backcall.
...
* gnu/packages/python-xyz.scm (python-backcall): New variable.
2019-06-18 14:22:23 +02:00
1e609b78c7
gnu: stunnel: Update to 5.55.
...
* gnu/packages/web.scm (stunnel): Update to 5.55.
2019-06-18 06:15:02 +02:00
90d537f833
gnu: gaupol: Update to 1.6.
...
* gnu/packages/video.scm (gaupol): Update to 1.6.
2019-06-18 06:15:02 +02:00
b37fa81d9b
gnu: eternalterminal: Update to 5.1.10.
...
* gnu/packages/terminals.scm (eternalterminal): Update to 5.1.10.
2019-06-18 06:15:02 +02:00
614f7df3ae
gnu: mercurial: Update to 5.0.1.
...
* gnu/packages/version-control.scm (mercurial): Update to 5.0.1.
2019-06-18 06:15:02 +02:00
f2c119a129
gnu: rtv: Update to 1.27.0.
...
* gnu/packages/syndication.scm (rtv): Update to 1.27.0.
2019-06-18 06:15:02 +02:00
ecd5c202b2
gnu: libnftnl: Update to 1.1.3.
...
* gnu/packages/linux.scm (libnftnl): Update to 1.1.3.
2019-06-18 06:15:02 +02:00
55c08305d6
gnu: gandi.cli: Update to 1.5.
...
* gnu/packages/networking.scm (gandi.cli): Update to 1.5.
2019-06-18 06:15:02 +02:00
a0f2c945e3
gnu: hcxdumptool: Update to 5.1.5.
...
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.5.
2019-06-18 06:15:02 +02:00
6807d6a985
gnu: hcxtools: Update to 5.1.6.
...
* gnu/packages/networking.scm (hcxtools): Update to 5.1.6.
2019-06-18 06:15:02 +02:00
23414a8efa
gnu: mpd-mpc: Update to 0.32.
...
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.32.
2019-06-18 06:15:02 +02:00
8dec0cdf6e
gnu: radare2: Update to 3.5.1.
...
* gnu/packages/engineering.scm (radare2): Update to 3.5.1.
2019-06-18 06:15:01 +02:00
0ab5e91e1c
gnu: rust: Update to 1.35.0.
...
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.34): ...this.
(rust): New variable.
2019-06-17 19:46:05 -07:00
46dc940c9a
gnu: Add mako.
...
* gnu/packages/wm.scm (mako): New variable.
2019-06-18 00:25:23 +02:00
4c32f116cd
gnu: Add libhomfly.
...
* gnu/packages/sagemath.scm (libhomfly): New variable.
2019-06-18 00:14:14 +02:00
972ef8f591
gnu: Add libbraiding.
...
* gnu/packages/sagemath.scm (libbraiding): New variable.
2019-06-18 00:14:14 +02:00
c8535731b8
gnu: python-flask-script: Fix tests.
...
* gnu/packages/python-web.scm
(python-flask-script)[arguments]<#:phases>[patch-tests]: New phase.
2019-06-17 22:56:19 +02:00
27d6d24e63
gnu: python-scikit-learn: Update to 0.20.3.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3.
2019-06-17 20:22:42 +02:00
a6f2ced34b
gnu: Add tbsp.
...
* gnu/packages/bioinformatics.scm (tbsp): New variable.
2019-06-17 20:22:38 +02:00
bf473f0ca0
gnu: Add rw.
...
* gnu/packages/graph.scm (rw): New variable.
2019-06-17 19:47:15 +02:00
f455d99dfa
gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.
...
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here...
* gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
2019-06-17 19:47:15 +02:00
7658904a34
gnu: Fix freeorion build.
...
* gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling.
2019-06-17 17:37:04 +02:00
9f6065237d
gnu: Add edge-addition-planarity-suite.
...
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
2019-06-17 17:02:01 +02:00
1e1a65a633
gnu: python-cypari2: Update to 2.1.1.
...
* gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1.
2019-06-17 16:00:13 +02:00
20caeea483
gnu: Add cliquer.
...
* gnu/packages/sagemath.scm (cliquer): New variable.
2019-06-17 16:00:13 +02:00
505459d7cb
gnu: busybox: Don't install to usr.
...
* gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase
to prevent installing to %PREFIX/usr.
2019-06-17 16:27:16 +03:00
de2d14f2ff
gnu: waybar: Add optional dependencies.
...
* gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl,
libmpdclient and pulseaudio.
2019-06-17 13:33:06 +02:00
5cfc16320a
gnu: python-scipy: Update to 1.2.2.
...
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2.
2019-06-17 13:31:23 +02:00
f434664cc0
gnu: oil-shell: Update to 0.6pre22.
...
It turns out the currently packaged release fails to build for me.
According to upstream, the 0.6 pre-releases are preferable to
currently packaged 0.5.
gnu/packages/shells.scm (oil-shell): Update to 0.6pre22.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
73eacca85e
gnu: kakoune: Remove dependency on boost.
...
kakoune builds without boost since a while already.
* gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
123b9c02dd
gnu: open-zwave: Unbundle hidapi.
...
* gnu/packages/patches/open-zwave-hidapi.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/zwave.scm (open-zwave)[source](patches): New field.
(snippet): Delete 'cpp/hidapi'.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add HIDAPI.
2019-06-17 12:36:13 +02:00
bf95a142bb
gnu: gap: Update to 4.10.1.
...
* gnu/packages/algebra.scm (gap): Update to 4.10.1.
Install headers and library files by hand, since the make targets have
disappeared. Delete the special check phase, since the "make check" target
has appeared. Remove a package that is no longer recommended, and enable
two recommended packages with clarified licenses.
2019-06-17 12:15:21 +02:00
55350f8316
gnu: cmst: Don't install files to usr.
...
* gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles
phase before 'build. Add more substitutions.
2019-06-17 10:02:47 +03:00
9e3e80baa3
gnu: cava: Don't install files to usr.
...
* gnu/packages/audio.scm (cava)[arguments]: In configure-flags change
FONT_DIR to not use 'usr'.
2019-06-17 10:02:46 +03:00
ee0b4733e1
gnu: toybox: Don't install files to usr.
...
* gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to
remove any files installed in $PREFIX/usr.
2019-06-17 10:02:45 +03:00
c9f0331152
gnu: xpra: Update to 2.5.2.
...
* gnu/packages/xorg.scm (xpra): Update to 2.5.2.
2019-06-17 08:28:38 +02:00
0bc010dacd
gnu: Add emacs-extend-smime.
...
* gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
2019-06-16 21:25:59 -07:00
3c33931c80
gnu: Upgrade emacs-default-encrypt to 4.4.
...
* gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade
to 4.4.
<sha256>: Update accordingly.
<uri, home-page>: Honor changes to upstream's website.
2019-06-16 21:25:59 -07:00
932a6c422a
gnu: r-rhisat2: Update to 1.0.3.
...
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
2019-06-17 04:55:12 +02:00
42df44f645
gnu: r-seurat: Update to 3.0.2.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
2019-06-17 04:55:03 +02:00
6dc3c58728
gnu: r-tximport: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
2019-06-17 04:54:56 +02:00
7bbd06ed59
gnu: r-systempiper: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
2019-06-17 04:54:51 +02:00
fd61e9c5d6
gnu: r-r-utils: Update to 2.9.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
2019-06-17 04:54:46 +02:00
0f4182a137
gnu: r-dt: Update to 0.7.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.7.
2019-06-17 04:54:40 +02:00
074dd1806c
gnu: r-rcpparmadillo: Update to 0.9.500.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.500.2.0.
2019-06-17 04:54:36 +02:00
e89e4bb634
gnu: r-mime: Update to 0.7.
...
* gnu/packages/statistics.scm (r-mime): Update to 0.7.
2019-06-17 04:54:32 +02:00
24868ae72e
gnu: r-formatr: Update to 1.7.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.7.
2019-06-17 04:54:27 +02:00
4661effbd5
gnu: r-ggplot2: Update to 3.2.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0.
[propagated-inputs]: Remove r-plyr.
2019-06-17 04:54:11 +02:00
18242e4b52
gnu: r-servr: Update to 0.14.
...
* gnu/packages/cran.scm (r-servr): Update to 0.14.
2019-06-17 04:54:05 +02:00
9fea25cf32
gnu: r-polspline: Update to 1.1.15.
...
* gnu/packages/cran.scm (r-polspline): Update to 1.1.15.
2019-06-17 04:54:00 +02:00
663a50e8f9
gnu: r-deldir: Update to 0.1-21.
...
* gnu/packages/cran.scm (r-deldir): Update to 0.1-21.
2019-06-17 04:53:55 +02:00
776c62d1b2
gnu: r-nor1mix: Update to 1.3-0.
...
* gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0.
2019-06-17 04:53:51 +02:00
5cc896546b
gnu: r-tractor-base: Update to 3.3.2.
...
* gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2.
2019-06-17 04:53:47 +02:00
935c6532ac
gnu: r-rspectra: Update to 0.15-0.
...
* gnu/packages/cran.scm (r-rspectra): Update to 0.15-0.
2019-06-17 04:53:42 +02:00
a7794b7243
gnu: r-emmeans: Update to 1.3.5.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.
2019-06-17 04:53:37 +02:00
89afd03172
gnu: r-abcrf: Update to 1.8.
...
* gnu/packages/cran.scm (r-abcrf): Update to 1.8.
[propagated-inputs]: Add r-doparallel and r-foreach.
2019-06-17 04:53:20 +02:00
45dcc89de7
gnu: r-sjmisc: Update to 2.8.0.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0.
[propagated-inputs]: Remove r-haven; add r-insight.
2019-06-17 04:53:04 +02:00
e0cd8f7340
gnu: r-extradistr: Update to 1.8.11.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.11.
2019-06-17 04:52:57 +02:00
bb6c8f207b
gnu: guile-gi: Update to 0.0.2.
...
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2.
[source]: Fetch using url-fetch.
[arguments]: Add make flags to remove unexpectedly passing test from
XFAIL_TESTS.
[native-inputs]: Remove autoconf, automake, and texinfo.
2019-06-17 04:52:22 +02:00
d1a3a8e15e
gnu: guile-picture-language: Update to 0.0.1-1-91d10c9.
...
* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-1-91d10c9.
[build-system]: Use gnu-build-system.
[native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo.
2019-06-17 03:06:53 +02:00
58637415be
gnu: youtube-viewer: Refer to youtube-dl.
...
* gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl.
[arguments]: Add ‘refer-to-inputs’ phase.
2019-06-17 03:04:31 +02:00
a157fb2723
gnu: radare2: Download over HTTPS.
...
* gnu/packages/engineering.scm (radare2)[source]: Use HTTPS.
2019-06-17 03:04:31 +02:00
e605820bc5
gnu: radare2: Don't use NAME in source URI.
...
* gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME.
2019-06-17 03:04:30 +02:00
935e4b3abd
gnu: nsd: Update to 4.2.0.
...
* gnu/packages/dns.scm (nsd): Update to 4.2.0.
2019-06-17 03:04:30 +02:00
3abc9cc242
gnu: knot: Update to 2.8.2.
...
* gnu/packages/dns.scm (knot): Update to 2.8.2.
2019-06-17 03:04:30 +02:00
8fadac9577
gnu: suil: Update to 0.10.4.
...
* gnu/packages/audio.scm (suil): Update to 0.10.4.
2019-06-17 03:04:30 +02:00
562a2a4095
gnu: Add freeorion
...
* gnu/packages/games.scm (freeorion): New variable.
2019-06-16 21:40:09 +02:00
914bba2809
gnu: docker-compose: Add required Python dependencies.
...
* gnu/packages/python-xyz.scm (python-jsonschema-2.6):
New old public variable.
* gnu/packages/docker.scm (docker-compose)[inputs]:
Add python-docker-pycreds and use python-jsonschema-2.6.
2019-06-16 19:44:42 +02:00
10a3297389
gnu: dstat: Add two patches, fix two bugs.
...
* gnu/packages/admin.scm (dstat)[source]: Add patches.
* gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch,
gnu/packages/patches/dstat-skip-devices-without-io.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-06-16 19:44:42 +02:00
fa67073f13
gnu: dstat: Fix Python 3 deprecation warning.
...
* gnu/packages/admin.scm (dstat)[arguments]:
Add ‘fix-python3-DeprecationWarning’ phase.
2019-06-16 19:44:42 +02:00
4fce1ff129
gnu: Add font-anonymous-pro-minus.
...
* gnu/packages/fonts.scm (font-anonymous-pro-minus): New public variable.
2019-06-16 19:44:42 +02:00
8bae6c744c
gnu: keepassxc: Update to 2.4.3.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.3.
2019-06-16 14:26:45 +03:00
86c05c4465
gnu: linux-libre: Update to 5.1.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.10.
(%linux-libre-hash): Update hash.
2019-06-16 04:11:07 -04:00
fc6290fb1f
gnu: linux-libre@4.19: Update to 4.19.51.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.51.
(%linux-libre-4.19-hash): Update hash.
2019-06-16 04:09:12 -04:00
466595eeb2
gnu: linux-libre@4.14: Update to 4.14.126.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.126.
(%linux-libre-4.14-hash): Update hash.
2019-06-16 04:08:06 -04:00
7a1d6a7708
gnu: Add waybar.
...
* gnu/packages/wm.scm(waybar): New variable.
2019-06-16 00:29:00 +02:00
121d9d1a7a
gnu: Add spdlog.
...
* gnu/packages/logging.scm(spdlod): New variable.
2019-06-15 21:50:49 +02:00
494a8cd03a
gnu: units: Update to 2.19.
...
* gnu/packages/maths.scm (units): Update to 2.19.
2019-06-15 18:29:58 +02:00
a59902ff11
gnu: rush: Update to 1.9.
...
* gnu/packages/rush.scm (rush): Update to 1.9.
2019-06-15 18:29:45 +02:00
25cb591ce4
gnu: wget: Update to 1.20.3.
...
* gnu/packages/wget.scm (wget): Update to 1.20.3.
2019-06-15 18:29:31 +02:00
02dad49d42
gnu: gengetopt: Update to 2.23.
...
* gnu/packages/popt.scm (gengetopt): Update to 2.23.
[native-inputs]: New field.
2019-06-15 18:28:13 +02:00
d2de780272
gnu: dico: Update to 2.9.
...
* gnu/packages/dico.scm (dico): Update to 2.9.
2019-06-15 18:24:52 +02:00
b3f02caeec
gnu: libmicrohttpd: Update to 0.9.64.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.64.
2019-06-15 18:23:38 +02:00
ddd401d28f
gnu: swayidle: Add elogind support.
...
* gnu/packages/wm.scm (swayidle)[arguments]: Add #:configure-flags.
[inputs]: Add elogind.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-15 14:43:34 +02:00
24087364f5
gnu: emacs-desktop-environment: Update to 0.2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-desktop-environment): Update to 0.2.2.
2019-06-15 13:44:57 +02:00
a60dbad3bc
Merge branch 'staging'
2019-06-15 09:46:12 +02:00
c7fbf61865
gnu: Remove leftover patch.
...
This is a follow-up to commit d680a8afd1
2019-06-15 09:42:12 +02:00
4c7e8c234d
gnu: Add benchmark.
...
* gnu/packages/benchmark.scm(benchmark): New variable.
* gnu/packages/patches/benchmark-unbundle-googletest.patch: New file.
* gnu/local.mk(dist_patch_DATA): Add it.
2019-06-14 23:18:12 +02:00
bc70516bba
gnu: Remove r-loomr.
...
The loomR package is actually non-free software according to its author. See
https://github.com/mojaveazure/loomR/pull/24 .
* gnu/packages/bioinformatics.scm (r-loomr): Remove variable.
2019-06-14 17:32:04 +02:00
e23b6a6800
gnu: sway: Hardcode path to swaybg.
...
* gnu/packages/wm.scm (sway)[arguments]: Hardcode path to swaybg.
[inputs]: Add swaybg.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-14 14:06:06 +02:00
71bfbe9ba8
gnu: whois: Update to 5.4.3.
...
* gnu/packages/networking.scm (whois): Update to 5.4.3.
2019-06-14 14:06:06 +02:00
54200da4b3
gnu: ungoogled-chromium: Update to 75.0.3770.90-0.5d8abc3 [fixes CVE-2019-5842].
...
* gnu/packages/chromium.scm (%chromium-version): Update to 75.0.3770.90.
(%debian-revision): Update to 'debian/75.0.3770.90-1'.
(%chromium-origin): Update hashes.
2019-06-14 14:05:47 +02:00
30825c4629
gnu: emacs-org-noter: Tweak.
...
* gnu/packages/emacs-xyz.scm (emacs-org-noter): Adjust indentation and
description.
2019-06-13 23:27:34 +02:00
576cb396ea
gnu: Add emacs-org-noter
...
* gnu/packages/emacs-xyz.scm (emacs-org-noter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:23:28 +02:00
1aa2c25560
gnu: ikiwiki: Update to 3.20190228.
...
* gnu/packages/web.scm (ikiwiki): Update to 3.20190228.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
1682368932
gnu: perl-yaml-libyaml: Update to 0.78.
...
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.78.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
15f836efc1
gnu: perl-canary-stability: Update to 2013.
...
* gnu/packages/perl.scm (perl-canary-stability): Update to 2013.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
a3abc3fdfc
gnu: perl-db-file: Update to 1.852.
...
* gnu/packages/databases.scm (perl-db-file): Update to 1.852.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:44 +02:00
6bb5a7e08c
gnu: Add emacs-solaire-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:06 +03:00
4df1d31b54
gnu: Add emacs-mixed-pitch.
...
* gnu/packages/emacs-xyz.scm (emacs-mixed-pitch): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
fdcd50b93b
gnu: Add emacs-restart-emacs.
...
* gnu/packages/emacs-xyz.scm (emacs-restart-emacs): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
9989e06fda
gnu: Add emacs-elfeed-org.
...
* gnu/packages/emacs-xyz.scm (emacs-elfeed-org): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
c56a65aae7
gnu: Add emacs-xtest.
...
* gnu/packages/emacs-xyz.scm (emacs-xtest): New variable.
2019-06-13 23:40:05 +03:00
9062fde4c6
gnu: parcimonie: Update source and home-page.
...
* gnu/packages/gnupg.scm (parcimonie)[source]: Update to new url.
[home-page]: Same.
2019-06-13 20:43:20 +03:00
ed8d3f33a5
build-system/haskell: Generate Setup.hs if needed.
...
The default Setup.hs is boilerplate that is frequently left out of
source packages. Several packages already add a phase to generate it,
so moving this phase to the build system is just factoring out an
existing pattern.
See <https://github.com/phadej/time-compat/issues/4 >.
* guix/build/haskell-build-system.scm (generate-setuphs): New procedure.
(%standard-phases): Add it after 'unpack'.
* gnu/packages/haskell.scm (ghc-foundation, ghc-inline-c,
ghc-inline-c-cpp, ghc-rio): Remove 'arguments'.
Signed-off-by: Timothy Sample <samplet@ngyro.com>
2019-06-13 13:30:24 -04:00
f388f4a568
Merge branch 'staging'
2019-06-13 15:27:30 +02:00
2a9d89afb6
gnu: gstreamer: Skip failing test on 32-bit systems.
...
* gnu/packages/gstreamer.scm (gstreamer)[arguments]: When building for a
32-bit system, add #:phases.
2019-06-13 14:08:32 +02:00
3745909dc9
gnu: Add ri-li.
...
* gnu/packages/games.scm (ri-li): New variable.
* gnu/packages/patches/ri-li-modernize_cpp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-13 13:59:58 +02:00
47f2168b6f
gnu: Add Kawa.
...
* gnu/packages/kawa.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-06-13 13:00:37 +02:00
0ddf17dc1a
gnu; emacs-realgud: Add a 'file-name' field to the origin.
...
* gnu/packages/emacs-xyz.scm (emacs-realgud)[source]: Add 'file-name'.
2019-06-13 13:00:37 +02:00
0882c491f0
gnu: emacs-realgud: Update to 1.5.0.
...
* gnu/packages/emacs-xyz.scm (emacs-realgud): Update to 1.5.0.
[source]: Fetch from git.
Remove upstreamed patch.
* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 13:00:37 +02:00
ed8a551653
gnu: gpxsee: Fetch from Git instead of a generated tarball.
...
* gnu/packages/gps.scm (gpxsee)[source]: Use 'git-fetch'.
2019-06-13 13:00:37 +02:00
286ef5d97c
gnu: gpxsee: Upgrade to 7.8
...
* gnu/packages/gps.scm (gpxsee): Update to 7.8.
[arguments]: Leave "config.h" unchanged in 'configure' phase.
Remove 'install' phase.
[home-page, synopsis, description]: Update.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 13:00:37 +02:00
b801646727
gnu: nyacc: Add 0.94.0.
...
* gnu/packages/mes.scm (nyacc): Rename to...
(nyacc-0.86): ... this.
(nyacc): New variable.
(mes)[propagated-inputs]: Use NYACC-0.86 instead of NYACC.
2019-06-13 13:00:36 +02:00
4d6d2d7cca
gnu: gimp: Update to 2.10.12.
...
* gnu/packages/gimp.scm (gimp): Update to 2.10.12.
2019-06-13 12:52:55 +02:00
42b641b7d8
gnu: babl: Update to 0.1.66.
...
* gnu/packages/gimp.scm (babl): Update to 0.1.66.
2019-06-13 12:52:40 +02:00
aa86c3adbd
gnu: emacs-perspective: Update to 2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.2.
[source]: Download using git-fetch.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-06-13 10:46:24 +03:00
e22edabbb5
gnu: gpodder: Only return #t when needed.
...
* gnu/packages/gpodder.scm (gpodder)[arguments]: Return #t from
'do-not-run-msgmerge. Don't return #t from 'install.
2019-06-13 09:35:08 +03:00
2bb078efe5
gnu: gpodder: Update to 3.10.9.
...
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.9.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-06-13 09:29:27 +03:00
5cc5364eba
gnu: dstat: Add python2-six.
...
* gnu/packages/admin.scm (dstat)[inputs]: Add python2-six.
[arguments]: Add ‘wrap’ phase to make dstat find required modules.
2019-06-13 02:26:21 +02:00
bd9b15fb31
gnu: Add USB_ModeSwitch.
...
* gnu/packages/usb-modeswitch.scm: New file.
* gnu/packages/patches/usb-modeswitch-accept-config-arg.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add package.
(dist_patch_DATA): Add patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 00:44:01 +02:00
f0de9544a3
gnu: Add emacsy.
...
* gnu/packages/guile-xyz.scm (emacsy): New variable.
2019-06-12 23:31:43 +02:00
ff22ff42a1
gnu: GParted: Update 1.0.0.
...
* gnu/packages/disk.scm (gparted): Update to 1.0.0.
[arguments]: Remove obsolete configure flag.
[inputs]: Use gtkmm@3. Add yelp-tools and itstool. Remove libxslt,
gnome-doc-utils, docbook-xml-4.2, python-2, python2-libxml2, and which.
[native-inputs]: Add lvm2.
2019-06-12 15:46:53 -04:00
ac72162efd
gnu: linux-libre: Update to 5.1.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.9.
(%linux-libre-hash): Update hash.
2019-06-12 13:05:09 -04:00
6a2d0191c6
gnu: linux-libre@4.19: Update to 4.19.50.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.50.
(%linux-libre-4.19-hash): Update hash.
2019-06-12 13:03:53 -04:00
7ef05bcf4b
gnu: linux-libre@4.14: Update to 4.14.125.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.125.
(%linux-libre-4.14-hash): Update hash.
2019-06-12 13:01:12 -04:00
07b7a45a49
gnu: linux-libre@4.9: Update to 4.9.181.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.181.
2019-06-12 13:00:33 -04:00
a542521a70
gnu: linux-libre@4.4: Update to 4.4.181.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.181.
2019-06-12 12:59:50 -04:00
2916deb91b
gnu: perl-io-socket-ssl: Update to 2.066.
...
The previous version failed to build, but this updated version does build
successfully.
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.066.
2019-06-12 17:49:23 +01:00
24d32e67db
gnu: Add python-pynvim.
...
* gnu/packages/vim.scm (python-pynvim, python2-pynvim): New variables.
2019-06-12 18:48:15 +02:00
798b80cea2
gnu: Add r-txdb-hsapiens-ucsc-hg38-knowngene.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): New variable.
2019-06-12 16:23:44 +02:00
136eeb0b49
gnu: ungoogled-chromium: Update to 75.0.3770.80-0.5d8abc3.
...
* gnu/packages/chromium.scm (%preserved-third-party-files): Update for 75.
(%chromium-version): Update to 75.0.3770.80.
(%ungoogled-revision): Update to 5d8abc38b43a62f379615a0dc972b29d9aebb4b4.
(%debian-revision): Update to debian/75.0.3770.80-1.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(ungoogled-chromium-source): Include Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "enable_vr=false" to #:configure-flags.
2019-06-12 13:29:45 +02:00
d0804ea0c6
gnu: chromium: Move origins into separate variables.
...
* gnu/packages/chromium.scm (%chromium-origin, %ungoogled-origin,
%debian-origin): New variables.
(ungoogled-chromium-source): Adjust accordingly.
2019-06-12 13:29:35 +02:00
6054c823ae
gnu: pigx-rnaseq: Update to 0.0.6.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.6.
[inputs]: Remove bedtools.
2019-06-12 13:12:00 +02:00
e38731138d
gnu: wget.scm: List inputs alphabetically.
...
* gnu/packages/wget.scm: List inputs alphabetically.
2019-06-12 12:58:34 +03:00
d7397187df
gnu: wget: Change default paste site.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Change default paste
site in custom 'remove-dead-paste-site phase.
2019-06-12 12:58:33 +03:00
08b00d384b
gnu: wgetpaste: Add xclip to wrapper program list.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add xclip to list of
wrapper programs in custom 'wrap-program phase.
[inputs]: Add xclip.
2019-06-12 12:58:33 +03:00
ae6fa185af
gnu: Add r-annotatr.
...
* gnu/packages/bioconductor.scm (r-annotatr): New variable.
2019-06-12 11:07:37 +02:00
2444abd9c1
gnu: crate: Add proc-macro2 and quote.
...
* gnu/packages/crates-io.scm: (rust-proc-macro2): New variable.
(rust-quote): New variable.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11 18:05:44 -07:00
cb2471f726
gnu: crate: Add unicode-xid.
...
* gnu/local.mk: (GNU_SYSTEM_MODULES): Add packages/crates-io.scm.
* gnu/packages/crates-io.scm: New file, containing unicode-xid.
Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11 18:05:44 -07:00
a38525789c
gnu: Add emacs-shroud.
...
* gnu/packages/emacs-xyz.scm (emacs-shroud): New variable.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-06-11 22:35:26 +02:00
948ecc27dd
gnu: racket: Update to 7.3.
...
* gnu/packages/scheme.scm (racket): Update to 7.3.
* gnu/packages/patches/racket-store-checksum-override.patch: Update for Racket
7.3.
2019-06-11 13:45:27 -04:00
944cb87a33
gnu: Add r-psiplot.
...
* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
2019-06-11 13:39:50 +02:00
58bf51b4c0
Merge branch 'master' into staging
2019-06-11 10:27:09 +02:00
bf3005346e
gnu: tbb: Update to 2019_U8.
...
* gnu/packages/tbb.scm (tbb): Update to 2019_U8.
2019-06-11 09:31:24 +02:00
6c98d9c7fc
gnu: offlineimap: Update to 7.2.4.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.2.4.
2019-06-11 09:31:24 +02:00
80166beca2
gnu: wine-staging: Update to 4.10.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.10.
* gnu/packages/wine.scm (wine-staging): Update to 4.10.
2019-06-11 08:28:02 +02:00
0debb9ac7e
gnu: faudio: Update to 19.06.07.
...
* gnu/packages/audio.scm (faudio): Update to 19.06.07.
2019-06-11 08:28:01 +02:00
b6c31f0e50
gnu: kitty: Update to 0.14.2.
...
* gnu/packages/terminals.scm (kitty): Update to 0.14.2.
2019-06-11 08:28:01 +02:00
501d4b335a
gnu: grim: Update to 1.2.0.
...
* gnu/packages/image.scm (grim): Update to 1.2.0.
2019-06-10 23:53:05 +02:00
7d5113e50e
gnu: slurp: Update to 1.2.0.
...
* gnu/packages/image.scm (slurp): Update to 1.2.0.
2019-06-10 23:53:05 +02:00
075a90946b
gnu: Add r-biosigner.
...
* gnu/packages/bioconductor.scm (r-biosigner): New variable.
2019-06-10 13:41:48 +02:00
a9fac3f4d3
gnu: Add r-ropls.
...
* gnu/packages/bioconductor.scm (r-ropls): New variable.
2019-06-10 13:41:45 +02:00
31775e400e
gnu: linux-libre: Update to 5.1.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.8.
(%linux-libre-hash): Update hash.
2019-06-10 01:52:15 -04:00
84b3d9dd93
gnu: linux-libre@4.19: Update to 4.19.49.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.49.
(%linux-libre-4.19-hash): Update hash.
2019-06-10 01:51:08 -04:00
5d293300f8
gnu: linux-libre@4.15: Remove package.
...
This release series is no longer supported upstream.
* gnu/packages/linux.scm (%linux-libre-4.15-version)
(%linux-libre-4.15-hash, linux-libre-4.15)
(linux-libre-headers-4.15): Remove variables.
2019-06-10 01:48:01 -04:00
ff5355f58e
gnu: linux-libre@4.14: Update to 4.14.124.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.124.
(%linux-libre-4.14-hash): Update hash.
2019-06-10 01:45:26 -04:00
ac30257600
gnu: emacs-idris-mode: Use recent git checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-idris-mode)[source]: Use git-fetch.
[version]: Include revision and commit.
2019-06-09 23:18:16 -05:00
535a69e9e5
gnu: recutils: Remove emacs-minimal native input.
...
* gnu/packages/databases.scm (recutils)[native-inputs]: Remove emacs-minimal.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-10 07:04:48 +03:00
9df786752e
gnu: Add emacs-recutils.
...
* gnu/packages/databases.scm (emacs-recutils): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-10 07:04:45 +03:00
c447eb4d1d
gnu: Restore allegro-mesa-18.2.5-and-later.patch.
...
Dropped in 49405aaf5c
2019-06-10 01:26:50 +02:00
310c89e330
gnu: mobile-broadband-provider-info: Update to 20190116.
...
* gnu/packages/gnome.scm (mobile-broadband-provider-info): Update to 20190116.
2019-06-10 01:26:50 +02:00
597ab33d6b
gnu: gnumeric: Update to 1.12.45.
...
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.45.
2019-06-09 16:18:20 +02:00
0cece1b502
gnu: virtualgl: Update to 2.6.2.
...
* gnu/packages/gl.scm (virtualgl): Update to 2.6.2.
2019-06-09 16:18:20 +02:00
c3c9716e0e
gnu: cfitsio: Update to 3.47.
...
* gnu/packages/astronomy.scm (cfitsio): Update to 3.47.
2019-06-09 16:18:20 +02:00
ee861a54ab
gnu: radeontop: Don't use unstable tarball.
...
* gnu/packages/linux.scm (radeontop)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[home-page]: Move down to its conventional spot.
2019-06-09 16:18:20 +02:00
88e1bce53e
gnu: radeontop: Update to 1.2.
...
* gnu/packages/linux.scm (radeontop): Update to 1.2.
2019-06-09 16:18:20 +02:00
2d1d59ab57
gnu: r-rhisat2: Update to 1.0.2.
...
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.2.
2019-06-09 15:19:58 +02:00
61730c3db4
gnu: r-aucell: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.1.
2019-06-09 15:19:58 +02:00
823e23fffe
gnu: r-msnbase: Update to 2.10.1.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.1.
2019-06-09 15:19:58 +02:00
85e067161a
gnu: r-iranges: Update to 2.18.1.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.1.
2019-06-09 15:19:58 +02:00
303862330b
gnu: r-numderiv: Update to 2016.8-1.1.
...
* gnu/packages/statistics.scm (r-numderiv): Update to 2016.8-1.1.
2019-06-09 15:19:58 +02:00
eb3f1c2d24
gnu: r-quantreg: Update to 5.40.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.40.
2019-06-09 15:19:58 +02:00
e95d5ad958
gnu: r-fpc: Update to 2.2-2.
...
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-2.
2019-06-09 15:19:58 +02:00
d0b3d10e80
gnu: r-prabclus: Update to 2.3-1.
...
* gnu/packages/statistics.scm (r-prabclus): Update to 2.3-1.
2019-06-09 15:19:58 +02:00
cb6d481561
gnu: r-e1071: Update to 1.7-2.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-2.
2019-06-09 15:19:58 +02:00
Marius Bakke