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Author SHA1 Message Date
Kyle Meyer f2a3ff8591
gnu: git-annex: Build with MagicMime support. 
git-annex has a mechanism for configuring whether a file is added to the annex
or stored in git.  Building with MagicMime support makes it possible to
condition the behavior on a file's MIME type.

* gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:32 +02:00
Kyle Meyer e405912c20
gnu: Add ghc-magic. 
* gnu/packages/haskell-xyz.scm (ghc-magic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:27 +02:00
Kyle Meyer 7e772cb66d
gnu: git-annex: Update license. 
* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to
AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:10 +02:00
Carlo Zancanaro ec36339dfd
services: certbot: Add --manual-public-ip-logging-ok for manual challenges 
* gnu/services/certbot.scm (certbot-command): Add
  --manual-public-ip-logging-ok flag to the certbot command when doing a
  manual challenge.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:22:35 +02:00
Rutger Helling fb6e550d6b
gnu: retroarch: Update to 1.7.8.4. 
* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4.
 2019-09-16 08:25:04 +02:00
Rutger Helling eca0f3d070
gnu: mgba: Update to 0.7.3. 
* gnu/packages/emulators.scm (mgba): Update to 0.7.3.
 2019-09-16 08:25:04 +02:00
Ricardo Wurmus d80a15696b
gnu: Add r-variancepartition. 
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
 2019-09-15 22:57:47 +02:00
Ricardo Wurmus 2a360cf6ac
gnu: Add r-wavetiling. 
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
 2019-09-15 22:54:21 +02:00
Ricardo Wurmus f5349b4d5a
gnu: Add r-genomegraphs. 
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
 2019-09-15 22:51:52 +02:00
Ricardo Wurmus 4c63eeb8a4
gnu: Add r-oligo. 
* gnu/packages/bioconductor.scm (r-oligo): New variable.
 2019-09-15 22:50:31 +02:00
Ricardo Wurmus d6a5d9b24f
gnu: Add r-affxparser. 
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
 2019-09-15 22:50:25 +02:00
Ricardo Wurmus df8576e5c9
gnu: Add r-variantfiltering. 
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
 2019-09-15 22:41:03 +02:00
Ricardo Wurmus fc3719cc0f
gnu: Add r-shinythemes. 
* gnu/packages/cran.scm (r-shinythemes): New variable.
 2019-09-15 22:40:25 +02:00
Ricardo Wurmus 41b8b05c9e
gnu: Add r-shinytree. 
* gnu/packages/cran.scm (r-shinytree): New variable.
 2019-09-15 22:33:50 +02:00
Ricardo Wurmus 4112ff7e74
gnu: Add js-requirejs. 
* gnu/packages/javascript.scm (js-requirejs): New variable.
 2019-09-15 21:19:53 +02:00
Ricardo Wurmus bb0024dc69
gnu: Add r-reqon. 
* gnu/packages/bioconductor.scm (r-reqon): New variable.
 2019-09-15 21:07:57 +02:00
Ricardo Wurmus e5dfcd8e26
gnu: Add r-seqbias. 
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
 2019-09-15 21:07:56 +02:00
Ricardo Wurmus 12105c6c3a
gnu: Add r-affycoretools. 
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 01c7ba9982
gnu: Add r-oligoclasses. 
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 15184fb386
gnu: Add r-reportingtools. 
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
 2019-09-15 20:58:25 +02:00
Ricardo Wurmus 83b4209122
gnu: Add r-pfam-db. 
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
 2019-09-15 20:57:26 +02:00
Ricardo Wurmus 4ca2d6c1a6
gnu: Add r-affycontam. 
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
 2019-09-15 20:53:27 +02:00
Ricardo Wurmus 5094aa9472
gnu: Add r-affycompatible. 
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
 2019-09-15 20:53:21 +02:00
Ricardo Wurmus 5cf940de21
gnu: Add r-affycomp. 
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
 2019-09-15 20:53:14 +02:00
Ricardo Wurmus 53b1e10f23
gnu: Add r-affydata. 
* gnu/packages/bioconductor.scm (r-affydata): New variable.
 2019-09-15 20:53:01 +02:00
Ricardo Wurmus 853211a51b
gnu: Add r-timeseriesexperiment. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
 2019-09-15 20:42:41 +02:00
Ricardo Wurmus 739b2d10f0
gnu: Add r-wavcluster. 
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
 2019-09-15 20:41:01 +02:00
Ricardo Wurmus d77e69e9e1
gnu: r-spam: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
 2019-09-15 16:15:37 +02:00
Ricardo Wurmus e48e476f41
gnu: r-feather: Update to 0.3.5. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
 2019-09-15 16:15:37 +02:00
Giacomo Leidi 21fc601295
gnu: emacs-zerodark-theme: Update to 4.6. 
* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
 2019-09-15 15:29:18 +03:00
Ricardo Wurmus 991c44109f
gnu: Add yubico-pam. 
* gnu/packages/authentication.scm (yubico-pam): New variable.
 2019-09-15 09:28:24 +02:00
Ricardo Wurmus 9eac315069
gnu: r-delayedmatrixstats: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
 2019-09-14 23:39:39 +02:00
Ricardo Wurmus 82e343d14a
gnu: r-rhdf5lib: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
 2019-09-14 23:39:25 +02:00
Ricardo Wurmus cd25e29616
gnu: r-rtracklayer: Update to 1.44.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
 2019-09-14 23:39:20 +02:00
Ricardo Wurmus 146f0ba5d1
gnu: r-genomicranges: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
 2019-09-14 23:39:12 +02:00
Ricardo Wurmus 7f518ef70b
gnu: r-s4vectors: Update to 0.22.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
 2019-09-14 23:39:08 +02:00
Ricardo Wurmus 11f973e093
gnu: r-mixomics: Update to 6.8.4. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
 2019-09-14 23:39:03 +02:00
Ricardo Wurmus f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
 2019-09-14 23:38:58 +02:00
Ricardo Wurmus ec0270b1e9
gnu: r-regioner: Update to 1.16.4. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
 2019-09-14 23:38:51 +02:00
Björn Höfling cd75c487c8
gnu: Add emacs-elixir-mode. 
* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
 2019-09-14 19:44:40 +02:00
Rutger Helling fda8ed0eb1
gnu: wine-staging: Update to 4.16. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16.
* gnu/packages/wine.scm (wine-staging): Update to 4.16.
 2019-09-14 13:01:28 +02:00
Ricardo Wurmus 981dcc3b0c
gnu: r-tidyr: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
 2019-09-14 00:37:47 +02:00
Ricardo Wurmus 17f3960f28
gnu: r-diffusionmap: Update to 1.2.0. 
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus fd399b7a83
gnu: r-seqinr: Update to 3.6-1. 
* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus f5b1354fdb
gnu: Add r-lifecycle. 
* gnu/packages/cran.scm (r-lifecycle): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus cd3ba9c8c7
gnu: r-huge: Update to 1.3.3. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.3.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus ac50956f31
gnu: r-tidytree: Update to 0.2.7. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus aef5e2aadd
gnu: r-activity: Update to 1.3. 
* gnu/packages/cran.scm (r-activity): Update to 1.3.
[propagated-inputs]: Add r-insol.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus d72da21d54
gnu: r-sjplot: Update to 2.7.1. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.7.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 664e15ed8f
gnu: r-sjstats: Update to 0.17.6. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6.
[propagated-inputs]: Add r-parameters.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 28110e6842
gnu: r-emmeans: Update to 1.4.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 3ab3f7f3bb
gnu: r-sjlabelled: Update to 1.1.1. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 4557f44755
gnu: r-circlize: Update to 0.4.8. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a1f4399438
gnu: r-httpuv: Update to 1.5.2. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 5ad9da9ab3
gnu: Add r-insol. 
* gnu/packages/cran.scm (r-insol): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a0244ef000
gnu: Add r-rgdal. 
* gnu/packages/cran.scm (r-rgdal): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a5a79dd0b8
gnu: Add r-parameters. 
* gnu/packages/cran.scm (r-parameters): New variable.
 2019-09-14 00:37:45 +02:00
Efraim Flashner 18a613fb29
gnu: gnujump: Add desktop file. 
This fixes bug#37069.

* gnu/packages/games.scm (gnujump)[arguments]: Add custom
'create-desktop-entry phase to install a desktop file.
 2019-09-13 17:07:16 +03:00
Efraim Flashner dbb0b06eb4
gnu: tipp10: Fix path in desktop entry. 
* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to
hardcode executable path.
 2019-09-13 17:07:13 +03:00
Paul Garlick 0746c33eff
gnu: gmsh: Update home page. 
This addresses a 'guix lint' warning.

* gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL
redirection.
 2019-09-13 14:53:57 +01:00
Efraim Flashner f61f424d5b
gnu: mcron: Update to 1.1.2. 
* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2.
[arguments]: Remove custom 'set-timezone phase.
[native-inputs]: Add autoconf, automake, help2man, texinfo.
[inputs]: Remove ed, which.
 2019-09-13 16:02:31 +03:00
Efraim Flashner f0e149752a
gnu: shellutils.scm: Sort module inputs. 
* gnu/packages/shellutils.scm: Sort module inputs alphabetically.
 2019-09-13 15:39:43 +03:00
Collin J. Doering 8ebd56ea75
gnu: Add zsh-autosuggestions. 
* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-13 15:39:34 +03:00
Collin J. Doering 9c4cb1ef4c
gnu: Add ruby-rspec-wait. 
* gnu/packages/ruby.scm (ruby-rspec-wait): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-13 15:39:28 +03:00
Collin J. Doering f69f37d54a
gnu: Add sh-z shell tool 
* gnu/packages/shellutils.scm (sh-z): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-13 10:50:11 +02:00
L p R n d n a00a3132c7
gnu: Thunar: Update to 1.8.9. 
* gnu/packages/xfce.scm (thunar): Update to 1.8.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-13 10:50:11 +02:00
Ludovic Courtès ba05be2249
gnu: openblas: Set 'NUM_THREADS'. 
Until now, OpenBLAS would use at most the N threads, where N is the
number of cores that happened to be available on the build
machine (typically N=8).

* gnu/packages/maths.scm (openblas/fixed-num-threads): New variable.
(openblas)[replacement]: New field.
(openblas-ilp64): Use 'package/inherit'.
 2019-09-13 10:50:11 +02:00
Ricardo Wurmus 5ad0a45221
gnu: python-matplotlib-documentation: Add missing input. 
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]:
Add python-sphinx-copybutton.
(python2-matplotlib-documentation)[native-inputs]: Remove
python-sphinx-copybutton.
 2019-09-13 00:44:57 +02:00
Ricardo Wurmus bcb22b3624
gnu: Add python-sphinx-copybutton. 
* gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable.
 2019-09-13 00:44:57 +02:00
Ricardo Wurmus 5ea654cfe0
gnu: python-matplotlib: Update to 3.1.1. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1.
[native-inputs]: Remove python-nose; add python-pytest and unzip; add
jquery-ui.
[arguments]: Add build phases "fix-and-disable-failing-tests" and
"install-jquery-ui", and move the "check" phase after the "install" phase;
use the default backend in setup.cfg.
(python2-matplotlib): Keep at version 2.2.3.
(python-matplotlib-documentation)[arguments]: Remove "check" phase.
 2019-09-13 00:44:57 +02:00
Wiktor Żelazny 16fddf17f5
gnu: Add r-assertr. 
* gnu/packages/cran.scm (r-assertr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-09-13 00:44:57 +02:00
Brian Leung 86ce3691e1
gnu: emacs-interactive-align: Update to 0.4.2. 
* gnu/packages/emacs-xyz.scm (emacs-interactive-align): Update to 0.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-12 23:23:47 +02:00
Tim Gesthuizen 2151e04c1a
gnu: Add emacs-doom-themes. 
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): New variable.

Co-authored-by: Brett Gilio <brettg@posteo.net>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-12 23:22:19 +02:00
Ludovic Courtès d236cd16a7
linux-container: "run-container" scripts shows the container's PID. 
* gnu/build/linux-container.scm (call-with-container): Add
 #:process-spawned-hook and honor it.
* gnu/system/linux-container.scm (container-script)[script]:
Define 'explain' and pass it as #:process-spawned-hook'.
 2019-09-12 23:07:43 +02:00
Ludovic Courtès 3d8424a5ad
services: Fix /usr/bin/env special file target. 
This is a followup to a916215597.

* gnu/services/base.scm (%base-services): Fix "/usr/bin/env" target.
 2019-09-12 23:07:42 +02:00
Ludovic Courtès da966a7a3d
linux-container: Exclude more services when sharing networking with the host. 
* gnu/system/linux-container.scm (containerized-operating-system)[useless-services]:
Add more services to the list when SHARED-NETWORK? is true.
 2019-09-12 23:07:42 +02:00
Ludovic Courtès 5ccec77176
file-systems: Add /var/run/nscd to '%network-file-mappings'. 
This allows containers created by "guix environment -CN" or by
"guix system container -N" to talk to the host nscd.

* gnu/system/file-systems.scm (%network-file-mappings): Add
"/var/run/nscd".
* gnu/build/shepherd.scm (default-mounts)[nscd-socket]: Remove.
* gnu/system/linux-container.scm (container-script)[nscd-run-directory]
[nscd-mapping, nscd-os, nscd-specs]: Remove.
[script]: Filter out from SPECS bind-mounts where the device does not
exist.
* guix/scripts/environment.scm (launch-environment/container)
[optional-mapping->fs]: New procedure.
[mappings]: Remove %NETWORK-FILE-MAPPINGS.
[file-systems]: Add %NETWORK-FILE-MAPPINGS here, filtered through
'optional-mapping->fs'.
 2019-09-12 23:07:42 +02:00
Paul Garlick abed5df777
gnu: gmsh: Fetch source from Git. 
* gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
 2019-09-12 16:21:31 +01:00
Maxim Cournoyer e2fb29b792
gnu: python-pytest-virtualenv: Enable tests. 
* gnu/packages/python-check.scm (python-pytest-virtualenv)
[phases]{patch-virtualenv-executable}: New phase.
[propagated-inputs]: Move python-virtualenv from here...
[inputs]: ...to here.
 2019-09-13 00:10:35 +09:00
Maxim Cournoyer 01a53e0b37
gnu: python-pathpy: Add a missing propagated input. 
This fixes the build of 'python-pytest-shutil', amongst others.

* gnu/packages/python-xyz.scm (python-pathpy)[propagated-inputs]: Add
python-importlib-metadata.
 2019-09-13 00:09:50 +09:00
Tobias Geerinckx-Rice 237d4cf73c
gnu: gfbgraph: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (gfbgraph)[source]: Hard-code NAME.
 2019-09-12 16:16:44 +02:00
Tobias Geerinckx-Rice 7faed56c44
gnu: openconnect: Update to 8.05 [fixes CVE-2019-16239]. 
* gnu/packages/vpn.scm (openconnect): Update to 8.05.
 2019-09-12 16:16:44 +02:00
Ricardo Wurmus 8b35c8cd61
gnu: hypre: Update texlive-union. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive-generic-xypic
and texlive-fonts-xypic with texlive-xypic; add texlive-cm to the
texlive-union.
 2019-09-12 12:10:05 +02:00
Ricardo Wurmus 63d57404b3
gnu: texlive-xypic: Install all files. 
Reported by numerobis on the #guix IRC channel.

* gnu/packages/tex.scm (texlive-xypic)[source]: Install "tex/generic/xypic"
files.
[arguments]: Remove #:tex-directory.
 2019-09-12 12:10:05 +02:00
Brian Leung 4913828bb1
gnu: python-language-server: Update to 0.28.3-1.c3cab77. 
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.28.3-1.c3cab77.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2019-09-12 09:47:48 +09:00
Ricardo Wurmus 412153bbaf
gnu: r-bsgenome-celegans-ucsc-ce6: Permit substitution. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[arguments]:
Remove field.
 2019-09-11 23:59:28 +02:00
Ricardo Wurmus 86ced7b271
gnu: r-bsgenome-celegans-ucsc-ce6: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[source]: Use
BIOCONDUCTOR-URI.
 2019-09-11 23:58:52 +02:00
Ricardo Wurmus 0f272518ec
gnu: python-ipython-documentation: Make reproducible. 
Fixes <https://bugs.gnu.org/37373/>.

* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Add phase
"make-docs-reproducible" to remove timestamps from documentation generated in
dependent python-ipython-documentation package.
 2019-09-11 23:30:49 +02:00
Tobias Geerinckx-Rice 6f2f7bc88a
gnu: recode: Don't use NAME in source URI. 
* gnu/packages/textutils.scm (recode)[source]: Hard-code NAME.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice 5ca1900ba5
gnu: recode: Update to 3.7.5. 
* gnu/packages/textutils.scm (recode): Update to 3.7.5.
[native-inputs]: Use python@3 and python-cython@3.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice 3b14974706
gnu: glslang: Use GIT-FILE-NAME. 
* gnu/packages/vulkan.scm (glslang)[source]: Use GIT-FILE-NAME.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice 97e53dccc0
gnu: nghttp2: Don't use NAME in source URI. 
* gnu/packages/web.scm (nghttp2)[source]: Hard-code NAME.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice bfebc73a74
gnu: neofetch: Update to 6.1.0. 
* gnu/packages/admin.scm (neofetch): Update to 6.1.0.
 2019-09-11 22:56:04 +02:00
Rutger Helling e8cfac22c7
gnu: youtube-dl: Update to 2019.09.12. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.09.12.
 2019-09-11 21:03:02 +02:00
Tobias Geerinckx-Rice cf065aba1e
gnu: openssl: Update to 1.1.1d [fix CVE-2019-{1547,1549,1552,1563}]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1d.
 2019-09-11 18:30:22 +02:00
宋文武 5df412bfe6
services: libvirtd: Use '/run/current-system/profile/bin' as PATH. 
This is a followup to ef640db2f5.

* gnu/services/virtualization.scm (libvirt-shepherd-service): Set
'#:environment-variables' for 'make-forkexec-constructor'.
 2019-09-11 23:12:02 +08:00
Tobias Geerinckx-Rice ae9b6dba19
gnu: foo2zjs: Update to 20190909. 
* gnu/packages/cups.scm (foo2zjs): Update to 20190909.
 2019-09-11 16:30:15 +02:00
Maxim Cournoyer d1c9684753
gnu: workrave: Correct the types of inputs used. 
* gnu/packages/gnome.scm (workrave)[propagated-inputs]: Move them all to...
[inputs]: ...here.
[native-inputs]: Move libxscrnsaver to the 'inputs' field.
 2019-09-11 22:07:13 +09:00
Maxim Cournoyer aa51d92cdb
gnu: workrave: Update to version 1.10.34. 
* gnu/packages/gnome.scm (workrave): Update version and hash strings.
[inputs]: Remove python-cheetah.
[native-inputs]: Add boost, python-3 and python-jinja2; remove the "bin"
output of glib.
 2019-09-11 22:07:12 +09:00
Ludovic Courtès 7dc4b2a728
gnu: emacs-debbugs: Update to 0.19. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.19.
 2019-09-11 14:44:15 +02:00
Ludovic Courtès 373546123e
gnu: emacs-smart-mode-line: Update to 2.13. 
* gnu/packages/emacs-xyz.scm (emacs-smart-mode-line): Update to 2.13.
 2019-09-11 14:43:57 +02:00
Ludovic Courtès 28123c01d1
gnu: guile-json: Use "mirror://savannah" URL. 
* gnu/packages/guile.scm (guile-json, guile-json-3): Change URL to
mirror://savannah.
 2019-09-11 14:08:34 +02:00
Ludovic Courtès 4e0299194d
gnu: guile-json: Update to 3.2.0. 
* gnu/packages/guile.scm (guile-json-3): Update to 3.2.0.
 2019-09-11 14:08:34 +02:00
Ludovic Courtès 9abc58d3ef
gnu: guile-gcrypt: Update to 0.2.0. 
* gnu/packages/gnupg.scm (guile-gcrypt): Update to 0.2.0.
 2019-09-11 14:08:33 +02:00
宋文武 ef640db2f5
gnu: libvirt: Don't wrap with PATH. 
This reverts commit 903e051a71 to fix
<https://bugs.gnu.org/31365>.  The full path of the 'ip' command is already
embedded, and we want to search 'qemu' in PATH.

* gnu/packages/virtualization.scm (libvirt): Remove 'wrap-libvirtd phase.  Add
configure flags to run qemu as 'nobody:kvm'.
* gnu/services/virtualization.scm (libvirt-service-type): Add 'qemu' to the
system profile.
 2019-09-11 19:15:30 +08:00
Maxim Cournoyer e135ef9686
gnu: emacs-elpy: Update to 1.31.0. 
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.31.0.
 2019-09-11 18:10:21 +09:00
Maxim Cournoyer 296e1aea65
gnu: python-jedi: Update to 0.15.1 and re-enable tests. 
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.15.1; re-enable
tests.
 2019-09-11 18:10:20 +09:00
Maxim Cournoyer 4eb97c254e
gnu: python-parso: Run the test suite. 
* gnu/packages/python-xyz.scm (python-parso)[phases]: Replace the check phase.
 2019-09-11 18:10:20 +09:00
Maxim Cournoyer 1475094a45
gnu: python-parso: Update to 0.5.1. 
* gnu/packages/python-xyz.scm (python-parso): Update to 0.5.1.
 2019-09-11 18:10:20 +09:00
Steve Sprang 2316ce5187
gnu: Add openscad. 
* gnu/packages/engineering.scm (openscad): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-11 12:07:54 +03:00
Rutger Helling f8b7c35ad0
gnu: nftables: Update to 0.9.2. 
* gnu/packages/linux.scm (nftables): Update to 0.9.2.
 2019-09-11 10:21:55 +02:00
Rutger Helling c5e3f4f043
gnu: libnftnl: Update to 1.1.4. 
* gnu/packages/linux.scm (libnftnl): Update to 1.1.4.
 2019-09-11 10:21:55 +02:00
Tobias Geerinckx-Rice c1b79b3652
gnu: libsoup: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (libsoup)[source]: Hard-code NAME.
 2019-09-11 00:33:51 +02:00
Tobias Geerinckx-Rice b5b0fd2354
gnu: tracker: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (tracker)[source]: Hard-code NAME.
 2019-09-11 00:33:51 +02:00
Tobias Geerinckx-Rice 1d68eb321f
gnu: gvfs: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (gvfs)[source]: Hard-code NAME.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice abab956bfc
gnu: umockdev: Update to 0.13.2. 
* gnu/packages/check.scm (umockdev): Update to 0.13.2.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 886534b4e0
gnu: yoshimi: Update to 1.6.0.1. 
* gnu/packages/music.scm (yoshimi): Update to 1.6.0.1.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 0edfe55332
gnu: perl-archive-zip: Update to 1.65. 
* gnu/packages/perl-compression.scm (perl-archive-zip): Update to 1.65.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 8e42b087f0
gnu: haveged: Use @acronym in description. 
* gnu/packages/linux.scm (havege)[description]: Substitute @acronym
for @dfn mark-up.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 6664ec0c8a
gnu: haveged: Use HTTPS home page. 
* gnu/packages/linux.scm (haveged)[home-page]: Use HTTPS.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 389cae8b07
gnu: haveged: Update to 1.9.6. 
* gnu/packages/linux.scm (haveged): Update to 1.9.6.
 2019-09-11 00:33:50 +02:00
Brian Leung eb7ce870e0
gnu: emacs-helm-company: Update to 0.2.5. 
* gnu/packages/emacs-xyz.scm (emacs-helm-company): Update to 0.2.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-11 00:09:39 +02:00
Steve Sprang c3c0eda646
gnu: Add opencsg. 
* gnu/packages/graphics.scm (opencsg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-11 00:09:39 +02:00
Brian Leung 984cabc4a6
gnu: python-language-server: Update to 0.28.1. 
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.28.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-11 00:09:39 +02:00
Ludovic Courtès 489d16577e
gnu: cmake: Add package variant that knows about X.509 certificates. 
Fixes <https://bugs.gnu.org/37371>.

* gnu/packages/patches/cmake-curl-certificates.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cmake.scm (cmake/fixed): New variable.
 2019-09-11 00:09:39 +02:00
Tobias Geerinckx-Rice 7e143375d3
gnu: links: Update to 2.20.1 [security fix for tor users]. 
* gnu/packages/web-browsers.scm (links): Update to 2.20.1.
 2019-09-10 23:01:25 +02:00
Tobias Geerinckx-Rice 08dd5f673d
gnu: strongswan: Update to 5.8.1. 
* gnu/packages/networking.scm (strongswan): Update to 5.8.1.
 2019-09-10 21:51:11 +02:00
Tobias Geerinckx-Rice db05b57205
gnu: youtube-dl: Update to 2019.09.01. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.09.01.
 2019-09-10 21:38:55 +02:00
Tobias Geerinckx-Rice 97e036cac1
gnu: i3blocks: Update to 1.5. 
* gnu/packages/wm.scm (i3blocks): Update to 1.5.
[source]: Use git tag.
[arguments]: Remove entirely.
 2019-09-10 21:37:19 +02:00
Tobias Geerinckx-Rice 07c0110eac
gnu: weechat: Update to 2.6. 
* gnu/packages/irc.scm (weechat): Update to 2.6.
[source]: Remove obsolete patch.
[inputs]: Replace python-2 with python(@3).
[arguments]: Remove ‘wrap’ phase.
* gnu/packages/patches/weechat-python.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-09-10 21:37:19 +02:00
Timothy Sample 83aa656217
gnu: ghc@8.6: Add missing 'native-search-paths'. 
Fixes <https://bugs.gnu.org/37064>.

* gnu/packages/haskell.scm (ghc-8.6)[native-search-paths]: Set search
paths explicitly instead of inheriting them.
 2019-09-09 21:21:00 -04:00
Tobias Geerinckx-Rice e9c784fba1
gnu: rclone: Update to 1.49.2. 
* gnu/packages/sync.scm (rclone): Update to 1.49.2.
 2019-09-10 02:18:04 +02:00
Tobias Geerinckx-Rice ae1bab3e95
gnu: fakeroot: Update to 1.24. 
* gnu/packages/linux.scm (fakeroot): Update to 1.24.
[source]: Adjust and use HTTPS.
 2019-09-10 02:18:04 +02:00
Tobias Geerinckx-Rice 9a5f35fe05
gnu: eclib: Update to 20190909. 
* gnu/packages/algebra.scm (eclib): Update to 20190909.
 2019-09-10 02:18:04 +02:00
Tobias Geerinckx-Rice 36ed9b4678
gnu: aisleriot: Update to 3.22.9. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.9.
 2019-09-10 02:18:04 +02:00
Guillaume Le Vaillant deb083628f
gnu: monero-gui: Update to 0.14.1.2. 
* gnu/packages/finance.scm (monero-gui): Update to 0.14.1.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
Guillaume Le Vaillant b7a07bbd5e
gnu: monero: Activate Trezor support. 
* gnu/packages/finance.scm (monero):
  [native-inputs]: Add python and protobuf.
  [inputs]: Add libusb and protobuf.
  [arguments]: Add delete-dead-links phase.
  (monero-gui)[inputs]: Add libusb and protobuf.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
Guillaume Le Vaillant 44554d86da
gnu: monero: Fix detection of readline library. 
* gnu/packages/finance.scm (monero)[arguments]: Define 'Readline_ROOT_DIR'
  in 'configure-flags'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
L p R n d n c0c0e9b836
gnu: Add copyright header. 
* gnu/packages/xfce.scm: Add copyright header.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
L p R n d n c629b99e3b
gnu: orage: Fix build. 
* gnu/packages/xfce.scm (orage)[arguments]: Add phase fixing build with libical3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
L p R n d n b82cf9644a
gnu: ristretto: Update to 0.10.0. 
* gnu/packages/xfce.scm (ristretto): Update to 0.10.0.
[inputs] Add gtk+. Remove gtk+-2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
L p R n d n 3551f305c4
gnu: mousepad: Update to 0.4.2. 
* gnu/packages/xfce.scm (mousepad): Update to 0.4.2.
[arguments] Remove unnecessary --enable-gtk3 flag from #:configure-flags.
[inputs] Add xfconf.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-10 00:34:41 +02:00
Tobias Geerinckx-Rice 5fbba84696
gnu: zeromq: Use HTTPS home page. 
* gnu/packages/networking.scm (zeromq)[home-page]: Use HTTPS.
 2019-09-09 23:17:52 +02:00
Tobias Geerinckx-Rice 3053feab0a
gnu: zeromq: Update to 4.3.2. 
* gnu/packages/networking.scm (zeromq): Update to 4.3.2.
[source]: Download GitHub release tarball.
 2019-09-09 23:17:51 +02:00
Tobias Geerinckx-Rice ddaefa2202
gnu: libmbim: Update to 1.20.0. 
* gnu/packages/freedesktop.scm (libmbim): Update to 1.20.0.
 2019-09-09 23:17:51 +02:00
Tobias Geerinckx-Rice 351c804217
gnu: libmbim: Don't use NAME in source URI. 
* gnu/packages/freedesktop.scm (libmbim)[source]: Hard-code NAME.
 2019-09-09 23:17:51 +02:00
Tobias Geerinckx-Rice b243d2f7d3
gnu: libsecret: Update to 0.19.1. 
* gnu/packages/gnome.scm (libsecret): Update to 0.19.1.
 2019-09-09 23:17:51 +02:00
Tobias Geerinckx-Rice 0ada4e2987
gnu: libsecret: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (libsecret)[source]: Hard-code NAME.
 2019-09-09 23:17:51 +02:00
Jan Nieuwenhuizen 0b95b19b1d
gnu: mes: Update to 0.20. 
* gnu/packages/mes.scm (mes): Update to 0.20.  Use nyacc-0.99.0.
 2019-09-09 22:57:27 +02:00
Jan Nieuwenhuizen 9aed1de3e9
gnu: mescc-tools: Update to 0.6.1. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.6.1.
 2019-09-09 22:57:27 +02:00
Jan Nieuwenhuizen 86c3a50646
gnu: nyacc: Update to 0.99.0. 
* gnu/packages/mes.scm (nyacc): Update to 0.99.0.
 2019-09-09 22:57:26 +02:00
Nicolas Goaziou 695ee52eb5
gnu: grammalecte: Update to 1.4.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.4.0.
[synopsis]: Remove spurious space.
 2019-09-09 22:19:01 +02:00
Robert Vollmert d9e3a21318
gnu: Add scron. 
* gnu/packages/suckless.scm (scron): New package.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2019-09-09 21:53:26 +08:00
Efraim Flashner 53223dc340
gnu: kdeconnect: Update to 1.3.5. 
* gnu/packages/kde.scm (kdeconnect): Update to 1.3.5.
[source]: Update source uri.
 2019-09-09 16:31:16 +03:00
Efraim Flashner 0d7dfbced2
gnu: kdeconnect: Set upstream-name. 
* gnu/packages/kde.scm (kdeconnect)[properties]: New field.
 2019-09-09 16:18:39 +03:00
Ricardo Wurmus 3a341e822c
gnu: Add r-soupx. 
* gnu/packages/cran.scm (r-soupx): New variable.
 2019-09-09 11:26:42 +02:00
Rutger Helling c10a27a268
gnu: retroarch: Update to 1.7.8.3. 
* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.3.
 2019-09-09 08:35:46 +02:00
Rutger Helling 6b4bc27a47
gnu: btrfs-progs: Update to 5.2.2. 
* gnu/packages/linux.scm (btrfs-progs): Update to 5.2.2.
 2019-09-09 08:35:46 +02:00
Tobias Geerinckx-Rice fb8fe1e8d9
gnu: glib-networking: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (glib-networking)[source]: Hard-code NAME.
 2019-09-09 00:11:26 +02:00
Tobias Geerinckx-Rice a916215597
services: Add ‘/usr/bin/env’ special file. 
* gnu/services/base.scm (%base-services): Add ‘/usr/bin/env‘ to
special-files-service-type.
 2019-09-09 00:11:26 +02:00
Tobias Geerinckx-Rice 2777dc7589
gnu: bs1770gain: Return #t from source snippet. 
* gnu/packages/audio.scm (bs1770gain)[source]: Return #t from snippet.
 2019-09-08 23:56:33 +02:00
Tobias Geerinckx-Rice a2931b14d3
gnu: bs1770gain: Update to 0.6.0. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.6.0.
[source]: Adjust snippet.
 2019-09-08 23:56:33 +02:00
Vagrant Cascadian 30696ea2b2
gnu: diffoscope: Add zip and unzip for test suite. 
* gnu/packages/package-management (diffoscope)[native-inputs]: Add zip, unzip.
 2019-09-08 14:24:37 -07:00
Vagrant Cascadian ba7bd6c62d
gnu: Add pgpdump. 
* gnu/packages/gnupg (pgpdump): New variable.
* gnu/packages/package-management (diffoscope)[native-inputs]: Add pgpdump.
 2019-09-08 12:32:17 -07:00
Efraim Flashner 97f6004ca1
gnu: js-respond: Don't use unstable-tarball. 
* gnu/packages/javascript.scm (js-respond)[source]: Use 'git-fetch'.
 2019-09-08 19:03:45 +03:00
Efraim Flashner 367d0833c3
gnu: js-respond: Use minify-build-system. 
* gnu/packages/javascript.scm (js-respond)[build-system]: Use
minify-build-system.
[arguments]: Remove custom builder code.
[native-inputs]: Remove uglify-js, source, gzip, tar.
 2019-09-08 19:03:45 +03:00
Efraim Flashner e452c69aa8
gnu: js-filesaver: Don't use unstable tarball. 
* gnu/packages/javascript.scm (js-filesaver)[source]: Use 'git-fetch'.
 2019-09-08 19:03:45 +03:00
Efraim Flashner 9cf60dec1d
gnu: js-es5-shim: Update to 4.5.13. 
* gnu/packages/javascript.scm (js-es5-shim): Update to 4.5.13.
 2019-09-08 19:03:45 +03:00
Efraim Flashner 2209a4476e
gnu: js-es5-shim: Don't use unstable tarball. 
* gnu/packages/javascript.scm (js-es5-shim)[source]: Use 'git-fetch'.
 2019-09-08 19:03:44 +03:00
Efraim Flashner 3500cb58f8
gnu: js-selectize: Update to 0.12.6. 
* gnu/packages/javascript.scm (js-selectize): Update to 0.12.6.
 2019-09-08 19:03:44 +03:00
Efraim Flashner 4151447897
gnu: js-selectize: Don't use unstable tarball. 
* gnu/packages/javascript.scm (js-selectize)[source]: Use 'git-fetch'.
 2019-09-08 19:03:44 +03:00
Efraim Flashner 778f4430e0
gnu: js-highlight: Don't use unstable tarball. 
* gnu/packages/javascript.scm (js-highlight)[source]: Use 'git-fetch'.
 2019-09-08 19:03:44 +03:00
Efraim Flashner 16df291414
gnu: js-strftime: Don't use unstable tarball. 
* gnu/packages/javascript.scm (js-strftime)[source]: Use 'git-fetch'.
 2019-09-08 19:03:44 +03:00
Efraim Flashner 8a35e58a27
gnu: js-html5shiv: Don't use unstable tarball. 
* gnu/packages/javascript.scm (js-html5shiv)[source]: Use 'git-fetch'.
 2019-09-08 19:03:44 +03:00
Maxim Cournoyer ccdfae388d
services: openntpd: Fix the config generation code. 
This fixes issue #37318 (see: http://bugs.gnu.org/37318).

* gnu/services/networking.scm (openntpd-configuration->string): Rewrite in
order to make the "openntpd configuration generation sanity check" test pass.
 2019-09-08 23:15:32 +09:00
Maxim Cournoyer 2625abc6aa
services: openntpd: Add test for issue #3731. 
See http://debbugs.gnu.org/cgi/bugreport.cgi?bug=37318.

* gnu/services/networking.scm (openntpd-configuration->string): New procedure,
extracted from top of the `openntpd-shepherd-service' to make it testable.
(openntpd-shepherd-service): Adapt following the move of the code to the above
procedure.
* tests/networking.scm: Add a test for the `openntpd-configuration->string'
procedure.
 2019-09-08 23:15:32 +09:00
Maxim Cournoyer afd39a76e2
services: openntpd: Remove useless let. 
* gnu/services/networking.scm (openntpd-shepherd-service): Remove useless let.
 2019-09-08 23:15:31 +09:00
Maxim Cournoyer f92cf9d356
gnu: openntpd: Fix error CA errors when using constraints. 
The error printed by nttpd was "constraint: failed to load constraint ca" when
libressl tried loading the file /etc/ssl/cert.pem.  The problem was
investigated as part of fixing issue 37318 (see:
http://debbugs.gnu.org/cgi/bugreport.cgi?bug=37318).

* gnu/packages/ntp.scm (openntpd)[configure-flags]: Use the '--with-cacert'
flag to specify the location of the certificate authority file of libressl.
 2019-09-08 23:15:31 +09:00
Maxim Cournoyer 5658ae8a0a
services: ntp: Support different NTP server types and options. 
* gnu/services/networking.scm (ntp-server-types): New enum.
(<ntp-server>): New record type.
(ntp-server->string): New procedure.
(%ntp-servers): Define in terms of <htp-server> records.  Use the first
entrypoint server as a pool instead of a list of static servers.  This is more
resilient since a new server of the pool can be interrogated on every
request.  Add the 'iburst' options.
(ntp-configuration-servers): Define a custom accessor that warns but honors
the now deprecated server format.
(<ntp-configuration>): Use it.
(%openntpd-servers): New variable,
(<openntpd-configuration>): Use it, as a pool ('servers' field) instead of a
regular server.
* tests/networking.scm: New file.
* Makefile.am (SCM_TESTS): Register it.
* doc/guix.texi: Update documentation.
 2019-09-08 23:15:31 +09:00
Maxim Cournoyer d4de2f9ea4
services: ntp: Fix KOD warning. 
Otherwise the following messages would be printed by ntpd:

Sep  2 05:18:21 localhost ntpd[15849]: restrict default: KOD does nothing without LIMITE.
Sep  2 05:18:21 localhost ntpd[15849]: restrict ::: KOD does nothing without LIMITED.

Debian uses the same set of "restrict" keywords (see:
https://sources.debian.org/src/ntp/1:4.2.8p13+dfsg-2/debian/ntp.conf).

* gnu/services/networking.scm (ntp-shepherd-service): Add the 'limited'
keyword to both the IPv4 and IPv6 'restrict' directives.
 2019-09-08 23:15:30 +09:00
Maxim Cournoyer 08b4a10fa6
services: ntp: Allow large adjustment by default. 
This is documented as best practice in `man ntpd', and is required to allow
the date to be set correctly when traveling (without having to manually update
the hardware clock in the BIOS/UEFI).

* gnu/services/networking.scm (<ntp-server>)[allow-large-adjustment?]: Set the
default value to #t.
* doc/guix.texi (Networking Services): Update documentation.
 2019-09-08 23:15:29 +09:00
L p R n d n 3426c0e531
gnu: thunar-volman: Update to 0.9.5. 
* gnu/packages/xfce.scm (thunar-volman): Update to 0.9.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-08 14:43:41 +02:00
L p R n d n 2bb2971883
gnu: tumbler: Remove unused gstreamer. 
* gnu/packages/xfce.scm (tumbler)[inputs]: Remove gstreamer.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-08 14:43:41 +02:00
L p R n d n 2a6f5190cf
gnu: tumbler: Fix pdf thumbnailer. 
* gnu/packages/xfce.scm (tumbler)[inputs]: Add cairo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-08 14:43:41 +02:00
Ludovic Courtès befac35876
gnu: libraft: Fetch source from Git. 
* gnu/packages/cluster.scm (libraft)[source]: Switch to GIT-FETCH.
 2019-09-08 14:43:41 +02:00
Andrew Miloradovsky 45151bcb94
gnu: Add libraft 
* gnu/packages/cluster.scm (libraft): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-08 14:43:41 +02:00
Ludovic Courtès 74781c65f3
gnu: guix: Update to cc98b00. 
* gnu/packages/package-management.scm (guix): Update to cc98b00.
(guix-daemon)[arguments]: Remove 'install' phase; add
'change-default-guix' phase.
 2019-09-08 14:43:41 +02:00
Efraim Flashner 28ac73358f
gnu: micropython: Update to 1.11. 
* gnu/packages/python.scm (micropython): Update to 1.11.
 2019-09-08 14:43:15 +03:00
Efraim Flashner 78249ebf5b
gnu: wget2: Update to 1.99.2. 
* gnu/packages/wget.scm (wget2): Update to 1.99.2.
[source]: Download from gnu mirrors.
[arguments]: Remove custom 'bootstrap phase, update custom
'skip-network-tests phase. Don't build static library.
[inputs]: Add bzip2, gpgme, zlib.
[native-inputs]: Remove autoconf, automake, flex, gettext-minimal,
libtool, python-2.
 2019-09-08 13:53:26 +03:00
Efraim Flashner 7fb742215c
gnu: wget.scm: Use license: prefix. 
* gnu/packages/wget.scm (wget, wgetpaste, wget2)[license]: Use
'license:' prefix.
 2019-09-08 13:53:26 +03:00
raingloom 7fcc2f9355
gnu: Add fmit. 
* gnu/packages/music.scm (fmit): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2019-09-08 11:08:46 +02:00
Efraim Flashner 799d8d3ca6
gnu: haskell-xyz.scm: Correctly hide packages. 
* gnu/packages/haskell-xyz.scm (ghc-attoparsec-bootstrap,
ghc-integer-logarithms-bootstrap, ghc-scientific-bootstrap,
ghc-semigroups-bootstrap, ghc-unordered-containers-bootstrap,
ghc-wcwidth-bootstrap)[properties]: Fix typo, make 'hidden?' a tuple.
 2019-09-08 11:18:39 +03:00
Ricardo Wurmus e0819e5ca2
gnu: Add emacs-tao-theme. 
* gnu/packages/emacs-xyz.scm (emacs-tao-theme): New variable.
 2019-09-08 09:27:26 +02:00
Vagrant Cascadian bc5aa38667
gnu: Add odt2txt. 
* gnu/packages/textutils (odt2txt): New variable.
* gnu/packages/package-management (diffoscope)[native-inputs]: Add odt2txt.
  [use-modules]: Remove accidentally added libreoffice package module.
 2019-09-08 00:21:21 -07:00
Vagrant Cascadian d54ca1cd4d
gnu: Add sng. 
* gnu/packages/images (sng): New variable.
* gnu/packages/package-management (diffoscope)[native-inputs]: Add sng.
 2019-09-07 23:44:04 -07:00
Vagrant Cascadian 68fea604b0
gnu: Add pngsuite. 
* gnu/packages/image (pngsuite): New variable.
 2019-09-07 23:44:01 -07:00
Vagrant Cascadian 37ecf2d905
gnu: diffoscope: Enable even more tests. 
* gnu/packages/package-management (diffoscope)[native-inputs]: Add additional
  dependencies for tests.
  [use-module]: Add corresponding package modules.
 2019-09-07 20:28:48 -07:00
Vagrant Cascadian 3dd20da0cb
gnu: diffoscope: Enable additional tests. 
* gnu/packages/package-management (diffoscope) [native-inputs]: Add additional
  packages used for tests.
 2019-09-07 20:28:35 -07:00
Vagrant Cascadian 3ec8c0ca94
gnu: diffoscope: Update to 123. 
* gnu/packages/package-management (diffoscope): Update to 123.
  [arguments]: Update phase writable-test-data to include tests directory.
    Add phase remove-ocaml-test.
 2019-09-07 20:28:18 -07:00
Vagrant Cascadian 9f74bd317f
gnu: python-debian: Update to 0.1.36. 
* gnu/packages/python-xyz (python-debian): Update to 0.1.36.
  [source]: Switch to using git-fetch.
  [arguments]: Add phase to delete tests depending on tools not yet present in
  guix.
  [propagated-inputs]: Add python-chardet.
 2019-09-07 20:27:34 -07:00
Ricardo Wurmus f791b1eecc
gnu: r-rsubread: Update to 1.34.7. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.7.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus a39222d7e2
gnu: r-regioner: Update to 1.16.3. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.3.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus d40ebbf228
gnu: r-gprofiler: Update to 0.6.8. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.8.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus 8e70b33c56
gnu: r-annotationhub: Update to 2.16.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.1.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus f70599cb78
gnu: r-edger: Update to 3.26.8. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.8.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus 801dc98f1f
gnu: r-ggraph: Update to 2.0.0. 
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.0.
[propagated-inputs]: Add r-graphlayouts, r-rlang, and r-tidygraph; remove
r-plyr.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus 995a20e892
gnu: r-msigdbr: Update to 7.0.1. 
* gnu/packages/cran.scm (r-msigdbr): Update to 7.0.1.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus f396d343b7
gnu: r-ggeffects: Update to 0.12.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.12.0.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus 9a4706828c
gnu: r-ggformula: Update to 0.9.2. 
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.2.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus c90eebf791
gnu: r-insight: Update to 0.5.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.5.0.
 2019-09-08 00:30:33 +02:00
Ricardo Wurmus f11920c759
gnu: r-ggpubr: Update to 0.2.3. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.3.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 9960ad55be
gnu: r-geometry: Update to 0.4.4. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.4.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 02efab6917
gnu: r-feather: Update to 0.3.4. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.4.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 5e7c6e54c8
gnu: r-matrixstats: Update to 0.55.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.55.0.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus de162a1509
gnu: r-rcpparmadillo: Update to 0.9.700.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.700.2.0.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 2b705168e9
gnu: r-devtools: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.2.0.
[propagated-inputs]: Add r-covr, r-crayon, r-desc, r-dt, r-ellipsis, r-glue,
and r-rversions.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus e5cf3722c6
gnu: r-gdtools: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.0.
[inputs]: Add freetype.
[propagated-inputs]: Add r-systemfonts; remove r-withr.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 9567bd8dd9
gnu: Add r-tidygraph. 
* gnu/packages/cran.scm (r-tidygraph): New variable.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 9390300915
gnu: Add r-graphlayouts. 
* gnu/packages/cran.scm (r-graphlayouts): New variable.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 6983178b06
gnu: Add r-systemfonts. 
* gnu/packages/cran.scm (r-systemfonts): New variable.
 2019-09-08 00:30:32 +02:00
Ricardo Wurmus 7a5ed348c0
gnu: Add r-covr. 
* gnu/packages/cran.scm (r-covr): New variable.
 2019-09-08 00:30:32 +02:00
Arun Isaac 9d280ef2a8
gnu: poussetaches: Update to 0.0.2. 
* gnu/packages/web.scm (poussetaches): Update to 0.0.2.
 2019-09-08 00:02:59 +05:30
Julien Lepiller e877f4d012
gnu: nml: Fix for newer pillow version. 
* gnu/packages/game-development.scm (nml)[arguments]: Add a phase to fix
for newer pillow.
 2019-09-07 20:14:50 +02:00
Kei Kebreau c3a7dae831
gnu: qtermwidget: Enable UTF-8 support. 
* gnu/packages/lxqt.scm (qtermwidget)[inputs]: Add utf8proc.
 2019-09-07 09:17:34 -04:00
Rutger Helling 08b3521000
gnu: wireguard: Update to 0.0.20190905. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190905.
 2019-09-07 11:16:24 +02:00
Mark H Weaver f66aee3d0d
gnu: linux-libre: Update to 5.2.13. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.13.
(linux-libre-5.2-pristine-source): Update hash.
 2019-09-06 20:42:05 -04:00
Mark H Weaver a6ec7eba26
gnu: linux-libre@4.14: Update to 4.19.71. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.71.
(linux-libre-4.19-pristine-source): Update hash.
 2019-09-06 20:41:23 -04:00
Mark H Weaver d45f5c40a2
gnu: linux-libre@4.14: Update to 4.14.142. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.142.
(linux-libre-4.14-pristine-source): Update hash.
 2019-09-06 20:40:18 -04:00
Mark H Weaver 67ad69b768
gnu: linux-libre@4.9: Update to 4.9.191. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.191.
(linux-libre-4.9-pristine-source): Update hash.
 2019-09-06 20:39:13 -04:00
Mark H Weaver be0fb599e7
gnu: linux-libre@4.4: Update to 4.4.191. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.191.
(linux-libre-4.4-pristine-source): Update hash.
 2019-09-06 20:38:06 -04:00
Mark H Weaver 3fe53f49a7
Revert "services: Add ‘/usr/bin/env’ special file." 
This reverts commit 3b38bf141a.

The Guix project discussed this years ago and decided against including
/usr/bin/env.  That decision should not be reversed without a wider
discussion.
 2019-09-06 19:35:08 -04:00
Ricardo Wurmus a35f153d54
gnu: python-scipy: Update to 1.3.1. 
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.3.1.
(python2-scipy): Keep at version 1.2.2.
 2019-09-07 00:48:12 +02:00
L p R n d n 8cc5d3dc4d
gnu: xfce4-panel: Fix tzdata path. 
* gnu/packages/xfce.scm (xfce4-panel)[inputs]: Add tzdata.
[arguments] Add Fix-tzdata-path phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n 64200f0197
gnu: libxfce4ui: Add vendor. 
* gnu/packages/xfce.scm (libxfce4ui)[arguments]: Add #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n 48af935672
gnu: libxfce4ui: Add gobject-introspection support. 
* gnu/packages/xfce.scm (libxfce4ui): Add gobject-introspection to native-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n 279b5730d4
gnu: xfconf: Fix tests. 
* gnu/packages/xfce.scm (xfconf)[arguments]: Rename check phase to
  custom-check.
  [native-inputs]: Add dbus.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n dbfd5a1380
gnu: xfconf: Add vala support. 
* gnu/packages/xfce.scm (xfconf): Add vala to native-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
L p R n d n 2c10c4182c
gnu: xfconf: Add support for gobject-introspection. 
* gnu/packages/xfce.scm (xfconf): Add gobject-introspection to native-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-07 00:36:34 +02:00
Ludovic Courtès 4961364f16
gnu: qtwebkit: Disable non-x86 builds. 
* gnu/packages/qt.scm (qtwebkit)[supported-systems]: New field.
 2019-09-07 00:36:34 +02:00
Ludovic Courtès 61acb764ed
gnu: ecl-net.didierverna.asdf-flv: Fix variable name. 
Fixes a typo in 0403d01f01.

* gnu/packages/lisp.scm (ecl-net.didierverna.asdf-flv): New name of the
second occurrence of 'ecl-alexandria'.
 2019-09-07 00:36:34 +02:00
Ricardo Wurmus 7fc41e6e66
gnu: Add emacs-poet-theme. 
* gnu/packages/emacs-xyz.scm (emacs-poet-theme): New variable.
 2019-09-06 23:29:34 +02:00
Tobias Geerinckx-Rice ccbd1648f4
gnu: exim: Update to 4.92.2 [fixes CVE-2019-15846]. 
* gnu/packages/mail.scm (exim): Update to 4.92.2.
 2019-09-06 17:36:04 +02:00
Efraim Flashner cae5312758
gnu: crates-io.scm: Fix several home-pages. 
* gnu/packages/crates-io.scm (rust-constant-time-eq, rust-fixedbitset,
rust-futures, rust-pico-sys, rust-pkg-config, rust-quick-error,
rust-remove-dir-all, rust-spin, rust-tempdir, rust-traitobject,
rust-void)[home-page]: Update to correct home-page.
 2019-09-06 17:25:03 +03:00
Ricardo Wurmus 8205534569
gnu: Add samblaster. 
* gnu/packages/bioinformatics.scm (samblaster): New variable.
 2019-09-06 15:00:49 +02:00
Ricardo Wurmus 7cd446fd3f
gnu: Add r-txdb-celegans-ucsc-ce6-ensgene. 
* gnu/packages/bioconductor.scm (r-txdb-celegans-ucsc-ce6-ensgene): New
variable.
 2019-09-06 15:00:49 +02:00
Efraim Flashner 41ba4cf150
gnu: Add rust-parity-wasm. 
* gnu/packages/crates-io.scm (rust-parity-wasm): New variable.
 2019-09-06 15:46:04 +03:00
Efraim Flashner 540d830edc
gnu: Add rust-time. 
* gnu/packages/crates-io.scm (rust-time): New variable.
 2019-09-06 15:46:03 +03:00
Efraim Flashner 4282cbe9b0
gnu: Add rust-semver-parser-0.7. 
* gnu/packages/crates-io.scm (rust-semver-parser-0.7): New variable.
 2019-09-06 15:46:03 +03:00
Efraim Flashner 516b2f1a3b
gnu: Add rust-getopts. 
* gnu/packages/crates-io.scm (rust-getopts): New variable.
 2019-09-06 15:46:03 +03:00
Efraim Flashner 9a5ee9928a
gnu: Add rust-clang-sys. 
* gnu/packages/crates-io.scm (rust-clang-sys): New variable.
 2019-09-06 15:46:03 +03:00