10468636ff
gnu: python-pytest-cov: Clarify description.
...
* gnu/packages/python.scm (python-pytest-cov): Do it.
2016-01-17 22:37:04 +02:00
1abe448d56
gnu: Add python2-functools32.
...
* gnu/packages/python.scm (python2-functools32): New variable.
2016-01-17 22:37:04 +02:00
5988c299c4
gnu: Add python-pyasn1-modules.
...
* gnu/packages/python.scm (python-pyasn1-modules)
(python2-pyasn1-modules): New variables.
2016-01-17 22:37:04 +02:00
81f7f29752
gnu: Add python-rauth.
...
* gnu/packages/python.scm (python-rauth, python2-rauth): New variables.
2016-01-17 22:37:04 +02:00
8f0cc2ffce
gnu: Add python-swiftclient.
...
* gnu/packages/openstack.scm (python-swiftclient, python2-swiftclient):
New variables.
2016-01-17 22:37:04 +02:00
7a5b944eb5
gnu: Add python-futures.
...
* gnu/packages/python.scm (python-futures, python2-futures): New variables.
2016-01-17 22:37:04 +02:00
c9e330d001
gnu: Add python-keystoneclient.
...
* gnu/packages/openstack.scm (python-keystoneclient)
(python2-keystoneclient): New variables.
2016-01-17 22:37:04 +02:00
fb492b9a64
gnu: vmpk: Update to 0.6.2a.
...
* gnu/packages/music.scm (vmpk): Update to 0.6.2a.
2016-01-17 19:57:07 +01:00
cfac12723a
gnu: drumstick: Update to 1.0.2.
...
* gnu/packages/music.scm (drumstick): Update to 1.0.2.
2016-01-17 19:57:00 +01:00
81c29cccaa
gnu: mpv: Add features.
...
* gnu/packages/video.scm (mpv)[inputs]: Add libvdpau.
[arguments]: Add gpl3 and zsh completion flags.
2016-01-17 20:43:51 +02:00
3161d32d37
gnu: Add vdpauinfo.
...
* gnu/packages/video.scm (vdpauinfo): New variable.
2016-01-17 20:43:51 +02:00
d5650f86a7
gnu: Add libvdpau.
...
* gnu/packages/video.scm (libvdpau): New variable.
2016-01-17 20:43:51 +02:00
2328b47c64
gnu: Add autojump.
...
* gnu/packages/admin.scm (autojump): New variable.
2016-01-17 01:44:15 -06:00
f5a8491b69
gnu: hevea: Update to 2.28.
...
* gnu/packages/ocaml.scm (hevea): Update to 2.28.
[arguments]: Add 'patch-/bin/sh phase.
2016-01-17 01:04:43 -06:00
90907a22bc
gnu: unison: Add "doc" output.
...
* gnu/packages/ocaml.scm (unison)[source]: Use svn-fetch with snippet.
[outputs]: New field.
[native-inputs]: Add ghostscript, texlive, hevea, and lynx.
[arguments]: Add 'install-doc phase.
2016-01-17 01:04:43 -06:00
2309ed6862
gnu: samtools-0.1: Adapt to changes in "samtools" variable.
...
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add
"LIBCURSES" make flag; delete "configure" phase; disable tests outside
of "substitute-keyword-arguments".
2016-01-16 15:50:51 +01:00
c3e919d7a0
gnu: Add python-hy.
...
* gnu/packages/python.scm (python-hy, python2-hy): New variables.
2016-01-16 08:18:37 +08:00
e224b7d0bd
gnu: Add python-rply.
...
* gnu/packages/python.scm (python-rply, python2-rply): New variables.
2016-01-16 08:18:37 +08:00
4ecdeef8ae
gnu: Add python-astor.
...
* gnu/packages/python.scm (python-astor, python2-astor): New variables.
2016-01-16 08:18:37 +08:00
c06a3de93a
gnu: Add python-clint.
...
* gnu/packages/python.scm (python-clint, python2-clint): New variables.
2016-01-16 08:17:04 +08:00
2216e15cc3
gnu: Add python-args.
...
* gnu/packages.scm (python-args, python2-args): New variables.
2016-01-16 08:16:51 +08:00
78e6c4a862
gnu: Add khal.
...
* gnu/packages/calendar.scm (khal): New variable.
2016-01-15 16:45:24 -05:00
b97c1bfd56
gnu: python-urwid: Disable failing test test_remove_watch_file.
...
* gnu/packages/python.scm (python-urwid)[arguments]: Add
'disable-failing-test' phase.
[source]: Use pypi-uri.
2016-01-15 16:45:24 -05:00
226d333103
gnu: Update python-tzlocal to 1.2.
...
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.
[source]: Use pypi-uri.
[arguments]: Remove the custom 'unpack phase.
[native-inputs]: Remove unzip, python-setuptools.
[propagated-inputs]: Add python-pytz.
2016-01-15 16:45:24 -05:00
6bbbb53eeb
gnu: Add python-sphinxcontrib-newsfeed.
...
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15 16:45:24 -05:00
5c299bf016
gnu: Add python-icalendar.
...
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15 16:45:24 -05:00
a2f6a3d502
gnu: Add vdirsyncer.
...
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15 16:45:24 -05:00
f75bbb028a
gnu: Add radicale.
...
* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15 16:45:24 -05:00
89b8a5516f
gnu: Add python-pytest-xprocess.
...
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15 16:45:24 -05:00
28cecbb7cc
gnu: Add python-wsgi-intercept.
...
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15 16:45:24 -05:00
d7e729fe08
gnu: Add python-pytest-localserver.
...
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15 16:45:24 -05:00
6720dbb49f
gnu: Add python-pytest-cache.
...
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15 16:45:24 -05:00
848964fe11
gnu: Add python-execnet.
...
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15 16:45:24 -05:00
7b3a4ee4c3
gnu: Add python-apipkg.
...
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15 16:45:24 -05:00
7b17cab902
gnu: Add python-click-log.
...
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15 16:45:24 -05:00
d1deb90b3f
gnu: Add python-click-threading.
...
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15 16:45:24 -05:00
561bb3cb1a
gnu: Add python-requests-toolbelt.
...
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15 16:45:24 -05:00
5c6eea2ad1
gnu: Add python-atomicwrites.
...
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15 16:45:24 -05:00
f5ca44b86e
gnu: glade: Update to 3.18.5.
...
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
2016-01-15 22:29:37 +01:00
45f2ffb48c
gnu: openssh: Update to 7.1p2.
...
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15 02:46:12 -05:00
1beec63ac8
Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."
...
This reverts commit 6d139e53b5
2016-01-15 02:45:58 -05:00
6d139e53b5
gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].
...
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14 10:39:00 -05:00
df1f1d6936
gnu: Add docker-compose.
...
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14 09:17:12 -05:00
b42c9c8124
gnu: Add python-dockerpty.
...
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14 09:16:22 -05:00
d020bfc2df
gnu: Add python-docker-py.
...
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14 09:16:22 -05:00
67c52bb3e7
gnu: Add python-websocket-client.
...
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14 09:12:23 -05:00
210bf49754
gnu: Add python-texttable.
...
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
2016-01-14 09:12:23 -05:00
b3667afbd2
gnu: Update python-jsonschema to 2.5.1.
...
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
2016-01-14 09:12:06 -05:00
ea521b42c2
gnu: Add python-vcversioner.
...
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
2016-01-14 09:05:19 -05:00
e90051808b
gnu: Add version 2.7 variant of python-requests.
...
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14 09:05:19 -05:00
3141b83d4d
gnu: r-go-db: Add missing input.
...
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
"r-annotationdbi".
2016-01-14 14:43:59 +01:00
d7786ce9b0
gnu: r-sparsem: Add missing "gfortran" input.
...
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14 14:43:59 +01:00
0047d26a22
gnu: bowtie: Update to 2.2.6.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
2d12284d38
gnu: gnupg: Add TOFU support.
...
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14 15:05:36 +02:00
6b6f7d6a0e
gnu: orfm: Update to 0.5.3.
...
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
2016-01-14 08:00:10 +10:00
3d84a99e73
gnu: Add ruby-bio-commandeer.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14 08:00:02 +10:00
7c033c4627
gnu: Add ruby-systemu.
...
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-14 07:51:44 +10:00
e5a19fed19
gnu: julia: Update to 0.4.3.
...
* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
2016-01-13 17:05:38 +01:00
75418ae0fd
gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13 09:38:57 -05:00
c44734115a
gnu: samtools: Update to 1.3.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
2016-01-13 15:12:22 +01:00
98f2339189
gnu: skribilo: Update to 0.9.3.
...
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3.
[native-inputs]: New field.
2016-01-13 11:13:34 +01:00
c91d3fb7f4
gnu: boost: Update to 1.60.0.
...
* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
3abe8136fd
gnu: boost: Use modify-phases.
...
* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
2016-01-12 20:53:14 +01:00
16aa649117
gnu: sudo: Add fix for CVE-2015-5602.
...
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
9d9951d6a6
gnu: global: Use modify-phases syntax.
...
* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax.
2016-01-12 14:47:10 +02:00
94c3a6f1a6
gnu: global: Update to 6.5.2.
...
* gnu/packages/code.scm (global): Update to 6.5.2.
2016-01-12 14:39:15 +02:00
9f40b1171b
gnu: icedtea-6: Fix directory name in "unpack" phase.
...
* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
prefix in the "unpack" phase to "icedtea6-".
2016-01-12 11:39:21 +01:00
6b0d24b17c
gnu: linux-libre: Update to 4.4.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.4.
* gnu/packages/linux-libre-i686.conf,
gnu/packages/linux-libre-x86_64.conf: Update from
<https://jxself.org/git/kernel-configs.git >.
2016-01-11 19:13:37 -05:00
81f3e0c1f3
gnu: Add fxtract.
...
* gnu/packages/bioinformatics.scm (fxtract): New variable.
2016-01-12 07:49:19 +10:00
ec70fec559
gnu: youtube-dl: Update to 2016.01.09.
...
* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
2016-01-11 13:30:50 +02:00
4879d2ff66
gnu: gp2c: Update to 0.0.9pl5.
...
* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
2016-01-11 11:24:52 +01:00
4a6635f353
gnu: texlive: Use modify-phases syntax.
...
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
syntax.
2016-01-11 10:59:29 +01:00
a916c82649
gnu: man-pages: Update to 4.04.
...
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
2016-01-11 09:37:50 +02:00
9b9b7ffd8e
gnu: bedtools: Update to 2.25.0.
...
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
6573ac82ad
gnu: bedtools: Use modify-phases.
...
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
2016-01-11 00:36:13 +10:00
695bea9803
gnu: r: Update to 3.2.3.
...
* gnu/packages/statistics.scm (r): Update to 3.2.3.
2016-01-09 23:18:28 +01:00
13035f5a03
gnu: icecat: Update to 38.5.2-gnu1.
...
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
2016-01-09 22:51:28 +01:00
4c40fa0229
gnu: ruby-2.1: Update to 2.1.8.
...
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
2016-01-09 14:53:58 +10:00
f32274a71e
gnu: i2c-tools: Update source and home-page URLs.
...
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
3a04d5d4e4
gnu: lm-sensors: Update source and home-page URLs.
...
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
bea25ae83c
gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
...
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
2016-01-08 15:29:50 -05:00
2409f37f28
gnu: Add missing (gnu packages gcc) import.
...
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
2016-01-08 14:18:46 +01:00
9ef824c10e
gnu: xterm: Update to 322.
...
* gnu/packages/xorg.scm (xterm): Update to 322.
2016-01-08 14:12:29 +01:00
a65e26f091
gnu: epiphany: Update to 3.18.2.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
2016-01-08 17:34:08 +08:00
19e5258d84
gnu: webkitgtk: Update to 2.10.4.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
2016-01-08 17:34:08 +08:00
c8d969b58f
gnu: Add Pfff.
...
* gnu/packages/textutils.scm (pfff): New variable.
2016-01-07 21:13:35 +01:00
fbbaa4dde8
gnu: mpv: Remove 'samba' input.
...
This is a heavy-weight and uncommon feature. See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html >.
* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
2016-01-07 22:30:18 +03:00
cb933df6da
gnu: Add genomation.
...
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
2016-01-07 17:18:17 +01:00
03ea5a357e
gnu: Add seqPattern.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
2016-01-07 17:18:17 +01:00
c43a011de3
gnu: Add impute.
...
* gnu/packages/bioinformatics.scm (r-impute): New variable.
2016-01-07 17:18:17 +01:00
c63cef6699
gnu: Add BSgenome.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
2016-01-07 17:18:17 +01:00
fbf6045e33
gnu: Add plotly.
...
* gnu/packages/statistics.scm (r-plotly): New variable.
2016-01-07 17:18:17 +01:00
a28d646b63
gnu: Add viridis.
...
* gnu/packages/statistics.scm (r-viridis): New variable.
2016-01-07 17:18:17 +01:00
d547ce5e70
gnu: Add topGO.
...
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
2016-01-07 17:18:17 +01:00
e05c37da4a
gnu: Add matrixStats.
...
* gnu/packages/statistics.scm (r-matrixstats): New variable.
2016-01-07 17:18:17 +01:00
3703ffb41f
gnu: Add R.rsp.
...
* gnu/packages/statistics.scm (r-r-rsp): New variable.
2016-01-07 17:18:17 +01:00
a63efbb453
gnu: Add R.cache.
...
* gnu/packages/statistics.scm (r-r-cache): New variable.
2016-01-07 17:18:17 +01:00
9c94b53b5b
gnu: Add R.utils.
...
* gnu/packages/statistics.scm (r-r-utils): New variable.
2016-01-07 17:18:17 +01:00
c8c75a8d88
gnu: Add R.oo.
...
* gnu/packages/statistics.scm (r-r-oo): New variable.
2016-01-07 17:18:17 +01:00
8bfe007c9c
gnu: Add R.methodsS3.
...
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
2016-01-07 17:18:16 +01:00
a69a593595
gnu: Add base64enc.
...
* gnu/packages/statistics.scm (r-base64enc): New variable.
2016-01-07 17:18:16 +01:00
a8227e4ae9
gnu: Add DT.
...
* gnu/packages/statistics.scm (r-dt): New variable.
2016-01-07 17:18:16 +01:00
d706257b5b
gnu: Add SparseM.
...
* gnu/packages/statistics.scm (r-sparsem): New variable.
2016-01-07 17:18:16 +01:00
fb25d8803f
gnu: Add GO.db.
...
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
2016-01-07 17:18:16 +01:00
2fd7c04984
gnu: Add GenomicFeatures.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
2016-01-07 17:18:16 +01:00
317755ff0f
gnu: Add rtracklayer.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
2016-01-07 17:18:16 +01:00
d8a828af78
gnu: Add GenomicAlignments.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
2016-01-07 17:18:16 +01:00
6e76dda2d0
gnu: Add SummarizedExperiment.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
2016-01-07 17:18:16 +01:00
f8d74f7018
gnu: Add Rsamtools.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
2016-01-07 17:18:16 +01:00
bf15935337
gnu: Add Biostrings.
...
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
2016-01-07 17:18:16 +01:00
e91d362e48
gnu: Add BiocParallel.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
2016-01-07 17:18:16 +01:00
c465fa72ed
gnu: Add biomaRt.
...
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
2016-01-07 17:18:16 +01:00
8b7bce740d
gnu: Add AnnotationDbi.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
2016-01-07 17:18:16 +01:00
555e3399dc
gnu: Add Biobase.
...
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
2016-01-07 17:18:16 +01:00
bc899123e7
gnu: Add snow.
...
* gnu/packages/statistics.scm (r-snow): New variable.
2016-01-07 17:18:16 +01:00
6b82f56cf9
gnu: Add futile.logger.
...
* gnu/packages/statistics.scm (r-futile-logger): New variable.
2016-01-07 17:18:16 +01:00
b9ff33b50e
gnu: Add futile.options.
...
* gnu/packages/statistics.scm (r-futile-options): New variable.
2016-01-07 17:18:16 +01:00
ca65d387fd
gnu: Add lambda.r.
...
* gnu/packages/statistics.scm (r-lambda-r): New variable.
2016-01-07 17:18:16 +01:00
543ded3619
gnu: Add r-xml.
...
* gnu/packages/statistics.scm (r-xml): New variable.
2016-01-07 17:18:16 +01:00
cefaa79c9e
gnu: Add RCurl.
...
* gnu/packages/statistics.scm (r-rcurl): New variable.
2016-01-07 17:18:16 +01:00
21e4d6a9cf
gnu: Add RSQLite.
...
* gnu/packages/statistics.scm (r-rsqlite): New variable.
2016-01-07 17:18:15 +01:00
fe9451c50a
gnu: Add xmlstarlet.
...
* gnu/packages/xml.scm (xmlstarlet): New variable.
2016-01-07 16:00:00 +01:00
29e255ca83
gnu: zita-convolver: Drop the '-march=native' optimization.
...
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
6dff495580
gnu: zita-resampler: Drop the '-march=native' optimization.
...
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
7d3a1a2dd2
gnu: Add ruby-ansi.
...
* gnu/packages/ruby.scm (ruby-ansi): New variable.
2016-01-07 15:36:05 +01:00
5dfd276602
gnu: edirect: Update to 3.50.
...
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
2016-01-07 11:25:24 +01:00
62339e2d49
gnu: w3m: Enable SSL, disable broken protocols and ciphers.
...
Fixes <http://bugs.gnu.org/16791 >.
* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00
e6352001c4
gnu: w3m: Update patch to use '-p1'.
...
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
2016-01-07 02:35:38 -05:00
d4aaf95401
build-system/gnu: Make 'package-with-explicit-inputs' idempotent.
...
* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
#:guile argument.
2016-01-06 23:08:22 +01:00
dff9141c5e
gnu: guix: Update development snapshot to f888c0b.
...
* gnu/packages/package-management.scm (guix-devel): Update to f888c0b
2016-01-06 23:08:22 +01:00
c7b08410de
gnu: gmsh: Update to 2.11.0.
...
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
[arguments]: Replace 'check phase.
2016-01-06 10:49:23 -06:00
7b78f359d1
gnu: sudo: Use /var/run/sudo instead of /run/sudo.
...
* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
2016-01-06 15:51:31 +01:00
341ae58213
gnu: ldc: Fix license.
...
* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
2016-01-06 14:21:53 +01:00
a243e12aba
gnu: icedtea7: Rename to icedtea-7.
...
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
2016-01-06 11:38:50 +01:00
d028740622
gnu: icedtea6: Rename to icedtea-6.
...
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
2016-01-06 11:38:50 +01:00
5452588c1a
gnu: icedtea6, icedtea7: Rename package to "icedtea".
...
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
2016-01-06 11:38:50 +01:00
d2540f80c2
gnu: Add and use default IcedTea.
...
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
2016-01-06 11:38:50 +01:00
d91488908b
gnu: icedtea6, icedtea7: Unpack to "openjdk.src".
...
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
2016-01-06 11:38:50 +01:00
43c565d2e7
gnu: Add Jellyfish.
...
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
2016-01-06 11:10:46 +01:00
7d1f8d4f52
gnu: calibre: Update to 2.48.0.
...
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
2016-01-05 22:46:54 +01:00
a7ec569c98
gnu: Add LDC.
...
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
(dist_patch_DATA): Add patch file.
2016-01-05 16:24:57 +01:00
1075b43737
gnu: Add emacs-undo-tree.
...
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-01-05 00:28:42 +01:00
fe542b9762
gnu: emacs: Remove 'info.info'.
...
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'. Add
'remove-info.info' phase.
2016-01-05 00:28:42 +01:00
4828ff91ff
gnu: gtk+: Add patch to support GUIX_GTK3_PATH.
...
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
2016-01-04 16:11:10 -05:00
2a6afac905
gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH.
...
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
2016-01-04 16:11:10 -05:00
c2e87caaa6
gnu: julia: Update to 0.4.2.
...
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
2016-01-04 11:35:57 +01:00
50b40d0709
gnu: Add libuv-julia.
...
* gnu/packages/julia.scm (libuv-julia): New variable.
2016-01-04 11:35:57 +01:00
f1e3a8aed2
gnu: utf8proc: Update to 1.3.1.
...
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
2016-01-04 11:35:57 +01:00
77553dff86
gnu: samba: Update to 4.3.3.
...
Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.
* gnu/packages/samba.scm (samba): Update to 4.3.3.
2016-01-03 14:59:49 -05:00
f6cddbefcc
gnu: ldb: Update to 1.1.24.
...
Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.
* gnu/packages/samba.scm (ldb): Update to 1.2.24.
2016-01-03 14:59:49 -05:00
Efraim Flashner