3141b83d4d
gnu: r-go-db: Add missing input.
...
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
"r-annotationdbi".
2016-01-14 14:43:59 +01:00
d7786ce9b0
gnu: r-sparsem: Add missing "gfortran" input.
...
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14 14:43:59 +01:00
0047d26a22
gnu: bowtie: Update to 2.2.6.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
2d12284d38
gnu: gnupg: Add TOFU support.
...
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14 15:05:36 +02:00
6b6f7d6a0e
gnu: orfm: Update to 0.5.3.
...
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
2016-01-14 08:00:10 +10:00
3d84a99e73
gnu: Add ruby-bio-commandeer.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14 08:00:02 +10:00
7c033c4627
gnu: Add ruby-systemu.
...
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-14 07:51:44 +10:00
e5a19fed19
gnu: julia: Update to 0.4.3.
...
* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
2016-01-13 17:05:38 +01:00
75418ae0fd
gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13 09:38:57 -05:00
c44734115a
gnu: samtools: Update to 1.3.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
2016-01-13 15:12:22 +01:00
98f2339189
gnu: skribilo: Update to 0.9.3.
...
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3.
[native-inputs]: New field.
2016-01-13 11:13:34 +01:00
c91d3fb7f4
gnu: boost: Update to 1.60.0.
...
* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
3abe8136fd
gnu: boost: Use modify-phases.
...
* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
2016-01-12 20:53:14 +01:00
16aa649117
gnu: sudo: Add fix for CVE-2015-5602.
...
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
9d9951d6a6
gnu: global: Use modify-phases syntax.
...
* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax.
2016-01-12 14:47:10 +02:00
94c3a6f1a6
gnu: global: Update to 6.5.2.
...
* gnu/packages/code.scm (global): Update to 6.5.2.
2016-01-12 14:39:15 +02:00
9f40b1171b
gnu: icedtea-6: Fix directory name in "unpack" phase.
...
* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
prefix in the "unpack" phase to "icedtea6-".
2016-01-12 11:39:21 +01:00
6b0d24b17c
gnu: linux-libre: Update to 4.4.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.4.
* gnu/packages/linux-libre-i686.conf,
gnu/packages/linux-libre-x86_64.conf: Update from
<https://jxself.org/git/kernel-configs.git >.
2016-01-11 19:13:37 -05:00
81f3e0c1f3
gnu: Add fxtract.
...
* gnu/packages/bioinformatics.scm (fxtract): New variable.
2016-01-12 07:49:19 +10:00
ec70fec559
gnu: youtube-dl: Update to 2016.01.09.
...
* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
2016-01-11 13:30:50 +02:00
4879d2ff66
gnu: gp2c: Update to 0.0.9pl5.
...
* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
2016-01-11 11:24:52 +01:00
4a6635f353
gnu: texlive: Use modify-phases syntax.
...
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
syntax.
2016-01-11 10:59:29 +01:00
a916c82649
gnu: man-pages: Update to 4.04.
...
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
2016-01-11 09:37:50 +02:00
9b9b7ffd8e
gnu: bedtools: Update to 2.25.0.
...
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
6573ac82ad
gnu: bedtools: Use modify-phases.
...
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
2016-01-11 00:36:13 +10:00
695bea9803
gnu: r: Update to 3.2.3.
...
* gnu/packages/statistics.scm (r): Update to 3.2.3.
2016-01-09 23:18:28 +01:00
13035f5a03
gnu: icecat: Update to 38.5.2-gnu1.
...
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
2016-01-09 22:51:28 +01:00
4c40fa0229
gnu: ruby-2.1: Update to 2.1.8.
...
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
2016-01-09 14:53:58 +10:00
f32274a71e
gnu: i2c-tools: Update source and home-page URLs.
...
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
3a04d5d4e4
gnu: lm-sensors: Update source and home-page URLs.
...
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
bea25ae83c
gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
...
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
2016-01-08 15:29:50 -05:00
2409f37f28
gnu: Add missing (gnu packages gcc) import.
...
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
2016-01-08 14:18:46 +01:00
9ef824c10e
gnu: xterm: Update to 322.
...
* gnu/packages/xorg.scm (xterm): Update to 322.
2016-01-08 14:12:29 +01:00
a65e26f091
gnu: epiphany: Update to 3.18.2.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
2016-01-08 17:34:08 +08:00
19e5258d84
gnu: webkitgtk: Update to 2.10.4.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
2016-01-08 17:34:08 +08:00
c8d969b58f
gnu: Add Pfff.
...
* gnu/packages/textutils.scm (pfff): New variable.
2016-01-07 21:13:35 +01:00
fbbaa4dde8
gnu: mpv: Remove 'samba' input.
...
This is a heavy-weight and uncommon feature. See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html >.
* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
2016-01-07 22:30:18 +03:00
cb933df6da
gnu: Add genomation.
...
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
2016-01-07 17:18:17 +01:00
03ea5a357e
gnu: Add seqPattern.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
2016-01-07 17:18:17 +01:00
c43a011de3
gnu: Add impute.
...
* gnu/packages/bioinformatics.scm (r-impute): New variable.
2016-01-07 17:18:17 +01:00
c63cef6699
gnu: Add BSgenome.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
2016-01-07 17:18:17 +01:00
fbf6045e33
gnu: Add plotly.
...
* gnu/packages/statistics.scm (r-plotly): New variable.
2016-01-07 17:18:17 +01:00
a28d646b63
gnu: Add viridis.
...
* gnu/packages/statistics.scm (r-viridis): New variable.
2016-01-07 17:18:17 +01:00
d547ce5e70
gnu: Add topGO.
...
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
2016-01-07 17:18:17 +01:00
e05c37da4a
gnu: Add matrixStats.
...
* gnu/packages/statistics.scm (r-matrixstats): New variable.
2016-01-07 17:18:17 +01:00
3703ffb41f
gnu: Add R.rsp.
...
* gnu/packages/statistics.scm (r-r-rsp): New variable.
2016-01-07 17:18:17 +01:00
a63efbb453
gnu: Add R.cache.
...
* gnu/packages/statistics.scm (r-r-cache): New variable.
2016-01-07 17:18:17 +01:00
9c94b53b5b
gnu: Add R.utils.
...
* gnu/packages/statistics.scm (r-r-utils): New variable.
2016-01-07 17:18:17 +01:00
c8c75a8d88
gnu: Add R.oo.
...
* gnu/packages/statistics.scm (r-r-oo): New variable.
2016-01-07 17:18:17 +01:00
8bfe007c9c
gnu: Add R.methodsS3.
...
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
2016-01-07 17:18:16 +01:00
a69a593595
gnu: Add base64enc.
...
* gnu/packages/statistics.scm (r-base64enc): New variable.
2016-01-07 17:18:16 +01:00
a8227e4ae9
gnu: Add DT.
...
* gnu/packages/statistics.scm (r-dt): New variable.
2016-01-07 17:18:16 +01:00
d706257b5b
gnu: Add SparseM.
...
* gnu/packages/statistics.scm (r-sparsem): New variable.
2016-01-07 17:18:16 +01:00
fb25d8803f
gnu: Add GO.db.
...
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
2016-01-07 17:18:16 +01:00
2fd7c04984
gnu: Add GenomicFeatures.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
2016-01-07 17:18:16 +01:00
317755ff0f
gnu: Add rtracklayer.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
2016-01-07 17:18:16 +01:00
d8a828af78
gnu: Add GenomicAlignments.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
2016-01-07 17:18:16 +01:00
6e76dda2d0
gnu: Add SummarizedExperiment.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
2016-01-07 17:18:16 +01:00
f8d74f7018
gnu: Add Rsamtools.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
2016-01-07 17:18:16 +01:00
bf15935337
gnu: Add Biostrings.
...
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
2016-01-07 17:18:16 +01:00
e91d362e48
gnu: Add BiocParallel.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
2016-01-07 17:18:16 +01:00
c465fa72ed
gnu: Add biomaRt.
...
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
2016-01-07 17:18:16 +01:00
8b7bce740d
gnu: Add AnnotationDbi.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
2016-01-07 17:18:16 +01:00
555e3399dc
gnu: Add Biobase.
...
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
2016-01-07 17:18:16 +01:00
bc899123e7
gnu: Add snow.
...
* gnu/packages/statistics.scm (r-snow): New variable.
2016-01-07 17:18:16 +01:00
6b82f56cf9
gnu: Add futile.logger.
...
* gnu/packages/statistics.scm (r-futile-logger): New variable.
2016-01-07 17:18:16 +01:00
b9ff33b50e
gnu: Add futile.options.
...
* gnu/packages/statistics.scm (r-futile-options): New variable.
2016-01-07 17:18:16 +01:00
ca65d387fd
gnu: Add lambda.r.
...
* gnu/packages/statistics.scm (r-lambda-r): New variable.
2016-01-07 17:18:16 +01:00
543ded3619
gnu: Add r-xml.
...
* gnu/packages/statistics.scm (r-xml): New variable.
2016-01-07 17:18:16 +01:00
cefaa79c9e
gnu: Add RCurl.
...
* gnu/packages/statistics.scm (r-rcurl): New variable.
2016-01-07 17:18:16 +01:00
21e4d6a9cf
gnu: Add RSQLite.
...
* gnu/packages/statistics.scm (r-rsqlite): New variable.
2016-01-07 17:18:15 +01:00
fe9451c50a
gnu: Add xmlstarlet.
...
* gnu/packages/xml.scm (xmlstarlet): New variable.
2016-01-07 16:00:00 +01:00
29e255ca83
gnu: zita-convolver: Drop the '-march=native' optimization.
...
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
6dff495580
gnu: zita-resampler: Drop the '-march=native' optimization.
...
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
7d3a1a2dd2
gnu: Add ruby-ansi.
...
* gnu/packages/ruby.scm (ruby-ansi): New variable.
2016-01-07 15:36:05 +01:00
5dfd276602
gnu: edirect: Update to 3.50.
...
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
2016-01-07 11:25:24 +01:00
62339e2d49
gnu: w3m: Enable SSL, disable broken protocols and ciphers.
...
Fixes <http://bugs.gnu.org/16791 >.
* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00
e6352001c4
gnu: w3m: Update patch to use '-p1'.
...
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
2016-01-07 02:35:38 -05:00
d4aaf95401
build-system/gnu: Make 'package-with-explicit-inputs' idempotent.
...
* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
#:guile argument.
2016-01-06 23:08:22 +01:00
dff9141c5e
gnu: guix: Update development snapshot to f888c0b.
...
* gnu/packages/package-management.scm (guix-devel): Update to f888c0b
2016-01-06 23:08:22 +01:00
c7b08410de
gnu: gmsh: Update to 2.11.0.
...
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
[arguments]: Replace 'check phase.
2016-01-06 10:49:23 -06:00
7b78f359d1
gnu: sudo: Use /var/run/sudo instead of /run/sudo.
...
* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
2016-01-06 15:51:31 +01:00
341ae58213
gnu: ldc: Fix license.
...
* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
2016-01-06 14:21:53 +01:00
a243e12aba
gnu: icedtea7: Rename to icedtea-7.
...
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
2016-01-06 11:38:50 +01:00
d028740622
gnu: icedtea6: Rename to icedtea-6.
...
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
2016-01-06 11:38:50 +01:00
5452588c1a
gnu: icedtea6, icedtea7: Rename package to "icedtea".
...
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
2016-01-06 11:38:50 +01:00
d2540f80c2
gnu: Add and use default IcedTea.
...
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
2016-01-06 11:38:50 +01:00
d91488908b
gnu: icedtea6, icedtea7: Unpack to "openjdk.src".
...
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
2016-01-06 11:38:50 +01:00
43c565d2e7
gnu: Add Jellyfish.
...
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
2016-01-06 11:10:46 +01:00
7d1f8d4f52
gnu: calibre: Update to 2.48.0.
...
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
2016-01-05 22:46:54 +01:00
a7ec569c98
gnu: Add LDC.
...
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
(dist_patch_DATA): Add patch file.
2016-01-05 16:24:57 +01:00
1075b43737
gnu: Add emacs-undo-tree.
...
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-01-05 00:28:42 +01:00
fe542b9762
gnu: emacs: Remove 'info.info'.
...
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'. Add
'remove-info.info' phase.
2016-01-05 00:28:42 +01:00
4828ff91ff
gnu: gtk+: Add patch to support GUIX_GTK3_PATH.
...
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
2016-01-04 16:11:10 -05:00
2a6afac905
gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH.
...
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
2016-01-04 16:11:10 -05:00
c2e87caaa6
gnu: julia: Update to 0.4.2.
...
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
2016-01-04 11:35:57 +01:00
50b40d0709
gnu: Add libuv-julia.
...
* gnu/packages/julia.scm (libuv-julia): New variable.
2016-01-04 11:35:57 +01:00
f1e3a8aed2
gnu: utf8proc: Update to 1.3.1.
...
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
2016-01-04 11:35:57 +01:00
77553dff86
gnu: samba: Update to 4.3.3.
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Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.
* gnu/packages/samba.scm (samba): Update to 4.3.3.
2016-01-03 14:59:49 -05:00
f6cddbefcc
gnu: ldb: Update to 1.1.24.
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Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.
* gnu/packages/samba.scm (ldb): Update to 1.2.24.
2016-01-03 14:59:49 -05:00
209778717a
gnu: Add Asymptote.
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* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-02 16:04:55 -06:00
b989390889
gnu: Add python-markdown.
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* gnu/packages/python.scm (python-markdown, python2-markdown): New
variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-01-02 00:07:29 -05:00
05d48c5243
gnu: love: Update to 0.10.0.
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* gnu/packages/game-development.scm (love): Update to 0.10.0.
2016-01-02 10:31:53 +08:00
319007c507
gnu: guile-ssh: Update to 0.9.0.
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* gnu/packages/ssh.scm (guile-ssh): Update to 0.9.0.
2016-01-01 22:59:20 +01:00
45147b0caa
gnu: Add xaos.
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* gnu/packages/maths.scm (xaos): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2015-12-31 11:29:43 +03:00
658212ebf7
gnu: Move cursynth to (gnu packages music).
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* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
2015-12-30 21:26:05 -05:00
2ef8bbc3ae
gnu: libcue: Update source URL.
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* gnu/packages/cdrom.scm (libcue)[source]: Update URL.
2015-12-30 19:59:58 -05:00
34da7af4c1
gnu: python-mox3: Update to 0.13.0.
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* gnu/packages/openstack.scm (python-mox3): Update to 0.13.0.
2015-12-30 23:16:09 +02:00
13fcc6df37
gnu: python-fixtures: Update to 1.4.0.
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* gnu/packages/python.scm (python-fixtures): Update to 1.4.0.
2015-12-30 23:16:09 +02:00
af1ab77312
gnu: python-pyld: Update to 0.6.8.
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* gnu/packages/python.scm (python-pyld): Update to 0.6.8.
2015-12-30 23:16:09 +02:00
1780424035
gnu: python-virtualenv: Update to 13.1.2.
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* gnu/packages/python.scm (python-virtualenv): Update to 13.1.2.
[arguments]: Custom test command.
[inputs]: Remove python-nose, add python-pytest.
2015-12-30 23:16:09 +02:00
ec89a25cad
gnu: python-oslosphinx: Update to 4.2.0.
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* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.2.0.
2015-12-30 23:16:09 +02:00
f66bb273de
gnu: python-oslo.serialization: Update to 2.2.0.
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* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.2.0.
2015-12-30 23:16:09 +02:00
4768988887
gnu: python-os-testr: Update to 0.5.0.
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* gnu/packages/openstack.scm (python-os-testr): Update to 0.5.0.
2015-12-30 23:16:09 +02:00
45f4c28d80
gnu: python-stevedore: Update to 1.10.0.
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* gnu/packages/openstack.scm (python-stevedore): Update to 1.10.0.
2015-12-30 23:16:09 +02:00
622d21bba9
gnu: python-tempest-lib: Update to 0.12.0.
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* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.12.0.
2015-12-30 23:16:09 +02:00
690e8c6637
gnu: python-passlib: Update to 1.6.5.
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* gnu/packages/python.scm (python-passlib): Update to 1.6.5.
2015-12-30 23:16:09 +02:00
03fd001cef
gnu: python-libarchive-c: Update to 2.2.
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* gnu/packages/python.scm (python-libarchive-c): Update to 2.2.
2015-12-30 23:16:09 +02:00
99b00dc796
gnu: python-tlsh: Update to 3.4.4.
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* gnu/packages/python.scm (python-tlsh): Update to 3.4.4.
2015-12-30 23:16:09 +02:00
b8834c219e
gnu: python-webob: Update to 1.5.1.
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* gnu/packages/python.scm (python-webob): Update to 1.5.1.
2015-12-30 23:16:09 +02:00
1b99553317
gnu: python-flake8: Update to 2.5.1.
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* gnu/packages/python.scm (python-flake8): Update to 2.5.1.
2015-12-30 23:16:09 +02:00
2abc397225
gnu: python-pyflakes: Update to 1.0.0.
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* gnu/packages/python.scm (python-pyflakes): Update to 1.0.0.
2015-12-30 23:16:09 +02:00
3655ee76a6
gnu: python-pyzmq: Update to 15.1.0.
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* gnu/packages/python.scm (python-pyzmq): Update to 15.1.0.
2015-12-30 23:16:09 +02:00
f56777be0a
gnu: python-psutil: Update to 3.3.0.
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* gnu/packages/python.scm (python-psutil): Update to 3.3.0.
2015-12-30 23:16:09 +02:00
38eb6919e1
gnu: python-pycparser: Update to 2.14.
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* gnu/packages/python.scm (python-pycparser): Update to 2.14.
2015-12-30 23:16:09 +02:00
d9aa097b96
gnu: python-pyrfc3339: Update to 1.0.
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* gnu/packages/python.scm (python-pyrfc3339): Update to 1.0.
2015-12-30 23:16:09 +02:00
f7cb984133
gnu: python-nose: Update to 1.3.7.
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* gnu/packages/python.scm (python-nose): Update to 1.3.7.
2015-12-30 23:16:09 +02:00
ec3bcbc7e4
gnu: python-rpy2: Update to 2.7.6.
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* gnu/packages/python.scm (python-rpy2): Update to 2.7.6.
2015-12-30 23:16:09 +02:00
11f97c27bc
gnu: pelican: Update to 3.6.3.
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* gnu/packages/python.scm (pelican): Update to 3.6.3.
2015-12-30 23:16:09 +02:00
e98149b3a4
gnu: python-jinja2: Update to 2.8.
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* gnu/packages/python.scm (python-jinja2): Update to 2.8.
2015-12-30 23:16:09 +02:00
8925d4f345
gnu: python-unidecode: Update to 0.04.18.
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* gnu/packages/python.scm (python-unidecode): Update to 0.04.18.
2015-12-30 23:16:09 +02:00
7fb9ff4dea
gnu: python-blinker: Update to 1.4.
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* gnu/packages/python.scm (python-blinker): Update to 1.4.
2015-12-30 23:16:09 +02:00
c2a9c1c0bc
gnu: python-dateutil: Update to 2.4.2.
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* gnu/packages/python.scm (python-dateutil): Update to 2.4.2.
2015-12-30 23:16:09 +02:00
2c3d13fe1b
gnu: isync: Update to 1.2.1.
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* gnu/packages/mail.scm (isync): Update to 1.2.1.
2015-12-30 23:16:09 +02:00
aadf46253a
gnu: getmail: Update to 4.48.0.
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* gnu/packages/mail.scm (getmail): Update to 4.48.0.
2015-12-30 23:16:09 +02:00
866fade9e5
gnu: notmuch: Update to 0.21.
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* gnu/packages/mail.scm (notmuch): Update to 0.21.
2015-12-30 23:16:09 +02:00
70e9d258c4
gnu: youtube-dl: Update to 2015.12.29.
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* gnu/packages/video.scm (youtube-dl): Update to 2015.12.29.
2015-12-30 23:16:09 +02:00
31e98ca63f
gnu: offlineimap: Update to 6.6.1.
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* gnu/packages/mail.scm (offlineimap): Update to 6.6.1.
2015-12-30 23:16:09 +02:00
3d5fd24090
gnu: Add Fritzing.
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* gnu/packages/engineering.scm (fritzing): New variable.
2015-12-30 20:41:33 +01:00
0084aaf3d4
gnu: Add lcov.
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* gnu/packages/code.scm (lcov): New variable.
2015-12-30 19:14:04 +01:00
0c1910ed03
gnu: ladspa: Update URLs.
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* gnu/packages/audio.scm (ladspa): Update source and home page url.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-12-30 18:18:38 +01:00
f95dad899b
gnu: texlive: Patch texmfcnf.lua.
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* gnu/packages/texlive.scm (texlive): Patch texmfcnf.lua to point to the
absolute texlive-texmf tree.
2015-12-30 11:24:26 +01:00
826244f01a
gnu: fuse: Fix source URI.
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This is a followup to commit b7e7d1b9d3
2015-12-29 22:25:02 -05:00
19f4554c94
gnu: Add fraggenescan.
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* gnu/packages/bioinformatics.scm (fraggenescan): New variable.
2015-12-29 20:14:03 -05:00
6819a8ddd6
gnu: Add shntool.
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* gnu/packages/audio.scm (shntool): New variable.
2015-12-29 19:55:21 -05:00
6da16993eb
gnu: Add cuetools.
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* gnu/packages/audio.scm (cuetools): New variable.
2015-12-29 19:55:21 -05:00
11afbbc651
gnu: enlightenment: Update to 0.20.2.
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* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.2.
2015-12-29 22:52:20 +02:00
6959a13271
gnu: sshfs-fuse: Update source URL.
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* gnu/packages/linux.scm (sshfs-fuse)[source]: Update URL.
2015-12-29 14:20:55 -05:00
b7e7d1b9d3
gnu: fuse: Update to 2.9.4.
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* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
[source]: Remove patch.
2015-12-29 14:20:55 -05:00
c7d0bf0071
gnu: youtube-dl: Update to 2015.12.23.
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* gnu/packages/video.scm (youtube-dl): Update to 2015.12.23.
2015-12-29 09:33:10 +02:00
6da2e99e2e
gnu: tuxguitar: Set missing GCJFLAGS.
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* gnu/packages/music.scm (tuxguitar)[arguments]: Set compiler flags
"-fsource=1.4" and "-fPIC".
2015-12-29 07:52:19 +01:00
5f1c949866
gnu: tuxguitar: Use "modify-phases" syntax.
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* gnu/packages/music.scm (tuxguitar)[arguments]: Use "modify-phases"
syntax.
2015-12-29 07:52:19 +01:00
c1ff0f2fed
gnu: irssi: Update source URL.
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* gnu/packages/irssi.scm (irssi)[source]: Update URL.
2015-12-27 17:39:03 -05:00
85d42329b3
gnu: elementary: Update to 1.16.1.
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* gnu/packages/enlightenment.scm (elementary): Update to 1.16.1.
2015-12-27 15:33:20 +02:00
c1a064c96e
gnu: efl: Update to 1.16.1.
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* gnu/packages/enlightenment.scm (efl): Update to 1.16.1.
2015-12-27 14:44:29 +02:00
e21338bec5
gnu: python-decorator: Update to 4.0.6.
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* gnu/packages/python.scm (python-decorator): Update to 4.0.6.
2015-12-26 23:10:53 +02:00
2a2d098195
gnu: python-exif-read: Update to 2.1.2.
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* gnu/packages/python.scm (python-exif-read): Update to 2.1.2.
2015-12-26 23:10:53 +02:00
82a3c582a3
gnu: python-coverage: Update to 4.0.3.
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* gnu/packages/python.scm (python-coverage): Update to 4.0.3.
2015-12-26 23:10:53 +02:00
9f44228512
gnu: python-pygments: Update to 2.0.2.
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* gnu/packages/python.scm (python-pygments): Update to 2.0.2.
2015-12-26 23:10:53 +02:00
2d3a437c79
gnu: python-cffi: Update to 1.4.2.
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* gnu/packages/python.scm (python-cffi): Update to 1.4.2.
2015-12-26 23:10:53 +02:00
71c8a804b9
gnu: python-py: Update to 1.4.31.
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* gnu/packages/python.scm (python-py): Update to 1.4.31.
2015-12-26 23:10:53 +02:00
b8ae816b0e
gnu: tinyproxy: Update source URL.
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* gnu/packages/web.scm (tinyproxy)[source]: Update URL.
2015-12-26 11:47:42 -05:00
4beb9f3a3b
gnu: zsh: Add alternate source URL.
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* gnu/packages/zsh.scm (zsh)[source]: Add alternate URL.
2015-12-26 11:26:57 -05:00
7b10135386
gnu: znc: Update to 1.6.2.
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* gnu/packages/messaging.scm (znc): Update to 1.6.2.
2015-12-26 11:24:55 -05:00
eb2371bcdd
gnu: znc: Update source URL.
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* gnu/packages/messaging.scm (znc)[source]: Update URL.
2015-12-26 11:24:55 -05:00
ce755b609d
gnu: libpng: Update to 1.5.26 [fixes CVE-2015-8472 and CVE-2015-8540].
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* gnu/packages/image.scm (libpng): Update to 1.5.26.
2015-12-26 11:01:01 -05:00
fe08b6e1eb
gnu: gdk-pixbuf: Update to 2.32.3. (fixes CVE-2015-4491)
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* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.32.3.
2015-12-26 11:01:01 -05:00
4d6b8da717
gnu: cups-filters: Update to 1.4.0. (fixes CVE-2015-8560)
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* gnu/packages/cups.scm (cups-filters): Update to 1.4.0.
2015-12-26 11:01:01 -05:00
75bae747cc
gnu: xlockmore: Update to 5.46.
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* gnu/packages/xdisorg.scm (xlockmore): Update to 5.46.
2015-12-26 02:22:20 -05:00
20c043587a
gnu: xlockmore: Add alternate URL.
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* gnu/packages/xdisorg.scm (xlockmore)[source]: Add alternate URL.
2015-12-26 02:17:46 -05:00
d642053386
gnu: wmctrl: Update source URL.
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* gnu/packages/xdisorg.scm (wmctrl)[source]: Update URL.
2015-12-26 01:55:14 -05:00
3759bfad32
gnu: colordiff: Update to 1.0.16.
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* gnu/packages/patchutils.scm (colordiff): Update to 1.0.16.
2015-12-26 00:10:32 -05:00
8d479d27ca
gnu: colordiff: Update source URL.
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* gnu/packages/patchutils.scm (colordiff)[source]: Update URL.
2015-12-26 00:10:09 -05:00
97a79b19d1
gnu: opus-tools: Update source URL.
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* gnu/packages/xiph.sch (opus-tools)[source]: Update URL.
2015-12-26 00:00:21 -05:00
5b0bcecdd1
gnu: moreutils: Update to 0.57.
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* gnu/packages/moreutils.scm (moreutils): Update to 0.57.
2015-12-25 23:59:26 -05:00
d4ec43392b
gnu: lynx: Update source URL.
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* gnu/packages/lynx.scm (lynx)[source]: Update URL.
2015-12-25 23:58:33 -05:00
4150ac88bc
gnu: libsodium: Add alternate URL.
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* gnu/packages/crypto.scm (libsodium)[source]: Add alternate URL.
2015-12-25 23:56:15 -05:00
8fa16f63e7
gnu: libev: Update source URL.
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* gnu/packages/libevent.scm (libev)[source]: Update URL.
2015-12-25 23:51:08 -05:00
8f26f23926
gnu: hevea: Update URL.
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* gnu/packages/ocaml.scm (hevea)[source]: Update URL.
2015-12-25 23:46:55 -05:00
513f8ab4f3
gnu: exim: Update to 4.86.
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* gnu/packages/mail.scm (exim): Update to 4.86.
2015-12-25 23:42:17 -05:00
fc6fdc05cb
gnu: exim: Add alternate URL.
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* gnu/packages/mail.scm (exim)[source]: Add alternate URL.
2015-12-25 23:42:17 -05:00
e1921a384c
gnu: eudev: Update home-page URL.
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* gnu/packages/linux.scm (eudev)[home-page]: Add up-to-date URL.
2015-12-25 23:40:32 -05:00
9625029401
gnu: Add Bristol.
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* gnu/packages/music.scm (bristol): New variable.
2015-12-24 19:39:17 +01:00
398abcf81a
gnu: lilypond: Update to 2.19.33.
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* gnu/packages/music.scm (lilypond): Update to 2.19.33.
2015-12-24 10:10:40 +01:00
409be57b09
gnu: lilypond: Build info pages with images.
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* gnu/packages/music.scm (lilypond)[arguments]: Set "conf" and "out" to
"www"; rename phase "hardcode-path-to-gs" to "fix-path-references";
fix reference to "/bin/sh"; add phase "install-info".
2015-12-24 10:10:40 +01:00
c493679f9a
gnu: Add Yoshimi.
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* gnu/packages/music.scm (yoshimi): New variable.
2015-12-24 10:10:40 +01:00
6a91494898
gnu: Add XML::Compile::WSDL11.
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* gnu/packages/xml.scm (perl-xml-compile-wsdl11): New variable.
2015-12-24 10:10:40 +01:00
baeab9b8b9
gnu: Add XML::Compile::SOAP.
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* gnu/packages/xml.scm (perl-xml-compile-soap): New variable.
2015-12-24 10:10:40 +01:00
c1d41b5df3
gnu: Add XML::Compile::Cache.
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* gnu/packages/xml.scm (perl-xml-compile-cache): New variable.
2015-12-24 10:10:40 +01:00
f7c4dc2f55
gnu: Add XML::LibXML::Simple.
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* gnu/packages/xml.scm (perl-xml-libxml-simple): New variable.
2015-12-24 10:10:40 +01:00
8aad646637
gnu: Add File::Slurp::Tiny.
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* gnu/packages/perl.scm (perl-file-slurp-tiny): New variable.
2015-12-24 10:10:40 +01:00
a05996e000
gnu: Add HTML::Template.
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* gnu/packages/web.scm (perl-html-template): New variable.
2015-12-24 10:10:40 +01:00
b494a5f1bd
gnu: Add XML::Compile.
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* gnu/packages/xml.scm (perl-xml-compile): New variable.
2015-12-24 10:10:40 +01:00
649e1676bc
gnu: Add XML::Compile::Tester.
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* gnu/packages/xml.scm (perl-xml-compile-tester): New variable.
2015-12-24 10:10:40 +01:00
dd686c0838
gnu: Add Log::Report.
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* gnu/packages/perl.scm (perl-log-report): New variable.
2015-12-24 10:10:39 +01:00
fc2448bf89
gnu: Add Log::Report::Optional.
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* gnu/packages/perl.scm (perl-log-report-optional): New variable.
2015-12-24 10:10:39 +01:00
c47b85de0c
gnu: Add String::Print.
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* gnu/packages/perl.scm (perl-string-print): New variable.
2015-12-24 10:10:39 +01:00
e92468d803
gnu: Add Unicode::LineBreak.
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* gnu/packages/perl.scm (perl-unicode-linebreak): New variable.
2015-12-24 10:10:39 +01:00
55932aeee1
gnu: Add MIME::Charset.
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* gnu/packages/perl.scm (perl-mime-charset): New variable.
2015-12-24 10:10:39 +01:00
8f1640ed8f
gnu: gusb: Update home-page.
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* gnu/packages/gnome.scm (gusb)[home-page]: Update home-page.
2015-12-24 02:16:57 -05:00
Ricardo Wurmus