Commit Graph

1566 Commits (4cf879fefbce0a4e960f8c90e1f8b598d7a6e3df)

Author SHA1 Message Date
Marius Bakke 4f70db97a0
Merge branch 'master' into core-updates 2018-11-20 01:14:12 +01:00
Marius Bakke 9acfe275ad
gnu: Add missing patch to local.mk.
This line was removed by accident in 0a41123f01.

* gnu/local.mk (dist_patch_DATA): Add "clang-3.5-libc-search-path.patch".
2018-11-20 01:11:26 +01:00
Ludovic Courtès af50b4abc0
gnu: qt@5: Fix build failure on glibc 2.28.
* gnu/packages/patches/qt-5-renameat2.patch: New file.
* gnu/packages/qt.scm (qt)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-18 12:28:34 +01:00
Eric Bavier 0a41123f01
gnu: Add ClamAV.
* gnu/packages/antivirus.scm: New file.
* gnu/packages/patches/clamav-system-tomsfastmath.patch,
gnu/packages/patches/clamav-config-llvm-libs.patch: New files.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new module.
(dist_patch_DATA): Add patches.

Co-authored-by: Christopher Baines <mail@cbaines.net>
2018-11-17 00:20:44 -06:00
Eric Bavier 7ed018e8a2
gnu: Add TomsFastMath.
* gnu/packages/multiprecision.scm (tomsfastmath): New variable.
* gnu/packages/patches/tomsfastmath-constness.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-17 00:20:44 -06:00
Maxim Cournoyer 03592a6f88
gnu: emacs-realgud: Patch configure.ac to repair the build.
This fixes https://bugs.gnu.org/33196, a build problem caused by a defective
Elisp snippet in a check in configure.ac.

* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
2018-11-15 22:42:35 -05:00
Marius Bakke 79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari 021bf6af18
gnu: Poppler: Fix CVE-2018-19149.
* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
2018-11-13 11:28:23 -05:00
Marius Bakke 8c5749f1b5
gnu: python-cffi: Fix test failure on i686.
* gnu/packages/patches/python-cffi-x87-stack-clean.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libffi.scm (python-cffi)[source](patches): Add it.
2018-11-11 17:18:05 +01:00
Efraim Flashner 95176544d5
gnu: python-paste: Update to 3.0.4.
* gnu/packages/python-web.scm (python-paste): Update to 3.0.4.
[source]: Remove patch, add snippet to remove one test.
[native-inputs]: Add python-pytest, python-pytest-runner.
* gnu/packages/patches/python-paste-remove-website-test.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-11 11:13:56 +02:00
Efraim Flashner 5ac2b2717f
gnu: python-networkx2: Remove variable.
* gnu/packages/python.scm (python-networkx2): Remove variable.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-11 11:13:55 +02:00
Mark H Weaver 3b14494616
gnu: icecat: Update to 60.3.0-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 60.3.0-gnu1.
[source]: Switch back to the normal source URI.  Remove patches that
are no longer applicable.
* gnu/packages/patches/icecat-CVE-2018-12383.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-10 20:28:32 -05:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Kei Kebreau e4b62e229e
gnu: wxmaxima: Update to 18.10.1.
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-11-09 01:09:06 -05:00
Efraim Flashner b44b1f08f6
gnu: hplip: Remove bundled non-free blobs.
This fixes <https://bugs.gnu.org/32184>.

* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-11-07 23:16:02 +02:00
Marius Bakke 55174e668f
Merge branch 'master' into core-updates 2018-11-07 21:09:57 +01:00
Marius Bakke 1badc85068
gnu: ceph: Update to 13.2.2.
* gnu/packages/patches/ceph-skip-unittest_blockdev.patch: Adjust for 13.2.2.
* gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file.
* gnu/packages/patches/ceph-detect-rocksdb.patch,
gnu/packages/patches/ceph-volume-respect-PATH.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 13.2.2.
[source]: Don't remove src/dpdk, which has been moved to src/spdk/dpdk and
is purged elsewhere.  Drop bundled rapidjson.  Adjust patch list.
[arguments]: Add "-DWITH_MGR_DASHBOARD_FRONTEND=OFF" and "-DWITH_SPDK=OFF" to
 #:configure-flags.   Drop obsolete "-DWITH_EMBEDDED".  Add workaround for
<https://bugs.gnu.org/30756>.  Remove obsolete test substitution.  Rework
'wrap-python-script' to be less verbose and wrap more scripts.
[native-inputs]: Add GCC-7.
[inputs]: Add OATH-TOOLKIT, RAPIDJSON and PYTHON2-SIX.
2018-11-07 21:01:12 +01:00
Ricardo Wurmus 152bebd9e0
gnu: gemma: Update to 0.98.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gemma-intel-compat.patch: Remove file.
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.
[source]: Remove patch.
[inputs]: Add eigen, gfortran:lib, and openblas.
[arguments]: Add phase "find-eigen".
2018-11-07 20:26:46 +01:00
Ludovic Courtès 4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms.
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06 17:08:46 +01:00
Tobias Geerinckx-Rice 418dd6adb5
gnu: jq: Update to 1.6.
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-06 15:34:36 +01:00
Marius Bakke 3bd83e6db2
gnu: qtbase: Remove obsolete patch.
This patch is no longer needed since 7930cfc989
was merged to core-updates.

* gnu/packages/patches/qtbase-glibc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/qt.scm (qtbase)[source](patches): Drop it.
2018-11-06 00:04:31 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Marius Bakke 208e82297c
gnu: xapian: Update to 1.4.9.
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
2018-11-05 23:46:38 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726.
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-31 21:57:02 +02:00
Tobias Geerinckx-Rice 1d9a9d27ae
gnu: meandmyshadow: Update to 0.5.
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-31 02:31:18 +01:00
Efraim Flashner 24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4.
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-30 11:15:39 +02:00
Efraim Flashner 20a3df0fd3
gnu: mailutils: Update to 3.5.
* gnu/packages/mail.scm (mailutils): Update to 3.5.
[source]: Remove patch, remove snippet.
[native-inputs]: Remove flex, bison.
[inputs]: Remove guile-2.0, add guile-2.2.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-28 00:02:08 +03:00
Tomáš Čech e9a041577a
gnu: Add telegram-purple.
* gnu/packages/messaging.scm (telegram-purple): New variable.
* gnu/packages/patches/telegram-purple-adjust-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-10-27 16:39:29 +02:00
Nikolai Merinov e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues.
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
2018-10-26 18:11:15 +02:00
Pierre Neidhardt 247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
2018-10-24 12:27:59 +02:00
Marius Bakke c166a88dea
Merge branch 'master' into core-updates 2018-10-22 23:07:16 +02:00
Meiyo Peng 9861bcd182
gnu: liblxqt: Update to 0.13.0.
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Ricardo Wurmus 7a1e62ca67
gnu: delly: Update to 0.7.9.
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 7321920cd3
gnu: crossmap: Update to 0.2.9.
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 9a6808e0c0
gnu: tophat: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Marius Bakke b6b3e5120a
gnu: libgxps: Update to 0.3.0.
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-10-21 17:57:01 +02:00
Christopher Baines 0d3f170864
gnu: Add soundconverter.
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-20 12:24:50 +01:00
Marius Bakke e8ef3cc4d6
gnu: swig: Fix build on i686.
* gnu/packages/patches/swig-guile-gc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/swig.scm (swig)[source](patches): Use it.
2018-10-18 19:13:13 +02:00
Marius Bakke 16f14f63db
gnu: Python: Adjust grafts for core-updates merge.
This adjust the grafts from a55ebe2e3a and
90aeaee861 to apply to Python 2.7.15 and 3.7.0.

* gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/python.scm (python-2/fixed): Remove patches that are already
present in 2.7.15.
(python-3/fixed): Remove obsolete phase.
2018-10-17 20:53:24 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Marius Bakke a55ebe2e3a
gnu: python2: Add upstream security fixes.
This addresses CVE-2018-{1060,1061,14647,1000802}.

* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
2018-10-17 20:34:37 +02:00
Marius Bakke 90aeaee861
gnu: python: Fix CVE-2018-14647.
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
2018-10-17 20:34:37 +02:00
Clément Lassieur f1376bfabe
gnu: emacs-exwm: Update to 0.20.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
2018-10-16 11:10:04 +02:00
Efraim Flashner 0627f93db6
gnu: clang-runtime: Adapt for glibc@2.28.
* gnu/packages/llvm.scm (clang-runtime@3.7, clang-runtime@3.8,
clang-runtime@3.9)[patches]: Add patch to work around removed ustat.h.
* gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-10-15 21:45:32 +03:00
Efraim Flashner b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux.
* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
2018-10-15 11:40:34 +03:00
Tobias Geerinckx-Rice dfe05297f3
gnu: x265: Update to 2.9.
* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-15 06:19:37 +02:00
Efraim Flashner 0ea6af996b
gnu: python-testtools: Fix regression in test suite.
* gnu/packages/check.scm (python-testtools)[source]: Add patch.
* gnu/packages/patches/python-testtools.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-10-11 22:34:20 +03:00
Efraim Flashner e4c399fe15
gnu: clisp: Update to 2.49.92.
* gnu/packages/lisp.scm (clisp): Update to 2.49.92.
[source]: Switch to git-fetch. Remove unneeded patch.
[arguments]: Remove '--enable-portability' flag, add CFLAGS for
armhf-linux. Update list of files needing substitutions in custom
'patch-sh-and-pwd phase.
[home-page]: Update to new home-page.
* gnu/packages/patches/clisp-glibc-2.26.patch: Remove file.
& gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-10 10:41:37 +03:00
Tobias Geerinckx-Rice de68ad095d
gnu: zstd: Update to 1.3.6.
* gnu/packages/compression.scm (zstd): Update to 1.3.6.
[source]: Remove merged patches.
* gnu/packages/patches/zstd-fix-stdin-list-test.patch,
gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-10-09 05:42:14 +02:00