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6706 Commits

Author SHA1 Message Date
Ricardo Wurmus a69a593595 gnu: Add base64enc. 
* gnu/packages/statistics.scm (r-base64enc): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus a8227e4ae9 gnu: Add DT. 
* gnu/packages/statistics.scm (r-dt): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus d706257b5b gnu: Add SparseM. 
* gnu/packages/statistics.scm (r-sparsem): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus fb25d8803f gnu: Add GO.db. 
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 2fd7c04984 gnu: Add GenomicFeatures. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 317755ff0f gnu: Add rtracklayer. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus d8a828af78 gnu: Add GenomicAlignments. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6e76dda2d0 gnu: Add SummarizedExperiment. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus f8d74f7018 gnu: Add Rsamtools. 
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus bf15935337 gnu: Add Biostrings. 
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus e91d362e48 gnu: Add BiocParallel. 
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus c465fa72ed gnu: Add biomaRt. 
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 8b7bce740d gnu: Add AnnotationDbi. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 555e3399dc gnu: Add Biobase. 
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus bc899123e7 gnu: Add snow. 
* gnu/packages/statistics.scm (r-snow): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6b82f56cf9 gnu: Add futile.logger. 
* gnu/packages/statistics.scm (r-futile-logger): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus b9ff33b50e gnu: Add futile.options. 
* gnu/packages/statistics.scm (r-futile-options): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus ca65d387fd gnu: Add lambda.r. 
* gnu/packages/statistics.scm (r-lambda-r): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 543ded3619 gnu: Add r-xml. 
* gnu/packages/statistics.scm (r-xml): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus cefaa79c9e gnu: Add RCurl. 
* gnu/packages/statistics.scm (r-rcurl): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 21e4d6a9cf gnu: Add RSQLite. 
* gnu/packages/statistics.scm (r-rsqlite): New variable.
 2016-01-07 17:18:15 +01:00
Raimon Grau fe9451c50a gnu: Add xmlstarlet. 
* gnu/packages/xml.scm (xmlstarlet): New variable.
 2016-01-07 16:00:00 +01:00
宋文武 29e255ca83 gnu: zita-convolver: Drop the '-march=native' optimization. 
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
 2016-01-07 22:47:32 +08:00
宋文武 6dff495580 gnu: zita-resampler: Drop the '-march=native' optimization. 
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
 2016-01-07 22:47:32 +08:00
Ben Woodcroft 7d3a1a2dd2 gnu: Add ruby-ansi. 
* gnu/packages/ruby.scm (ruby-ansi): New variable.
 2016-01-07 15:36:05 +01:00
Efraim Flashner b24765139c gnu: sqlite: Update to 3.10.0. 
* gnu/packages/databases.scm (sqlite): Update to 3.10.0.
 2016-01-07 12:37:37 +02:00
Ricardo Wurmus 5dfd276602 gnu: edirect: Update to 3.50. 
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
 2016-01-07 11:25:24 +01:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers. 
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
 2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'. 
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
 2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0. 
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
 2016-01-07 08:42:15 +02:00
Ludovic Courtès d4aaf95401 build-system/gnu: Make 'package-with-explicit-inputs' idempotent. 
* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
  'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
  #:guile argument.
 2016-01-06 23:08:22 +01:00
Ludovic Courtès dff9141c5e gnu: guix: Update development snapshot to f888c0b. 
* gnu/packages/package-management.scm (guix-devel): Update to f888c0b.
 2016-01-06 23:08:22 +01:00
Efraim Flashner bfcb7bcb73 gnu: libffi: Update to 3.2.1. 
* gnu/packages/libffi.scm (libffi): Update to 3.2.1.
 2016-01-06 20:28:57 +02:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
 2016-01-06 10:49:23 -06:00
Ludovic Courtès 7b78f359d1 gnu: sudo: Use /var/run/sudo instead of /run/sudo. 
* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
 2016-01-06 15:51:31 +01:00
Ludovic Courtès 341ae58213 gnu: ldc: Fix license. 
* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
 2016-01-06 14:21:53 +01:00
Ricardo Wurmus a243e12aba gnu: icedtea7: Rename to icedtea-7. 
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus d028740622 gnu: icedtea6: Rename to icedtea-6. 
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus 5452588c1a gnu: icedtea6, icedtea7: Rename package to "icedtea". 
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus d2540f80c2 gnu: Add and use default IcedTea. 
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus d91488908b gnu: icedtea6, icedtea7: Unpack to "openjdk.src". 
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus 43c565d2e7 gnu: Add Jellyfish. 
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
 2016-01-06 11:10:46 +01:00
Andreas Enge 7d1f8d4f52 gnu: calibre: Update to 2.48.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
 2016-01-05 22:46:54 +01:00
Efraim Flashner e5f037624e gnu: gettext: Use "modify-phases" syntax. 
* gnu/packages/gettext.scm (gettext)[arguments]: Use "modify-phases" syntax.
 2016-01-05 21:13:57 +02:00
Efraim Flashner d99861d39d gnu: gettext: Update to 0.19.7. 
* gnu/packages/gettext.scm (gettext): Update to 0.19.7.
 2016-01-05 21:06:59 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7. 
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
 2016-01-05 21:06:59 +02:00
Efraim Flashner 3ea110b704 gnu: libtasn1: Update to 4.7. 
* gnu/packages/tls.scm (libtan1): Update to 4.7.
[native-inputs]: Remove texinfo.
 2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Ludovic Courtès e8e2e18b84 gnu: Read 'C_INCLUDE_PATH' instead of 'CPATH'. 
This is a followup to 009b53fd.

* gnu/packages/cmake.scm (cmake)[arguments]: Use (getenv
"C_INCLUDE_PATH") instead of (getenv "CPATH").
* gnu/packages/package-management.scm (rpm)[arguments]: Likewise.
* gnu/packages/video.scm (avidemux)[arguments]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[arguments]: Likewise.
* gnu/packages/cross-base.scm (cross-gcc-arguments): Likewise, and unset
'C_INCLUDE_PATH' and 'CPLUS_INCLUDE_PATH'.
 2016-01-05 14:11:54 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'. 
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
 2016-01-05 13:13:17 +01:00
Dmitry Bogatov 1075b43737 gnu: Add emacs-undo-tree. 
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-01-05 00:28:42 +01:00
Ludovic Courtès fe542b9762 gnu: emacs: Remove 'info.info'. 
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'.  Add
'remove-info.info' phase.
 2016-01-05 00:28:42 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Efraim Flashner 4f2ca23493 gnu: libgcrypt: Update to 1.6.4. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.4.
 2016-01-04 22:29:08 +02:00
Manolis Ragkousis 4478dbd58c gnu: libgpg-error: Update to 1.21. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.21.
 2016-01-04 18:23:29 +02:00
Efraim Flashner 82cb8519bc gnu: tzdata: Update to 2015g. 
* gnu/packages/base.scm (tzdata): Update to 2015g.
 2016-01-04 16:59:13 +02:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00
Ricardo Wurmus 50b40d0709 gnu: Add libuv-julia. 
* gnu/packages/julia.scm (libuv-julia): New variable.
 2016-01-04 11:35:57 +01:00
Ricardo Wurmus f1e3a8aed2 gnu: utf8proc: Update to 1.3.1. 
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
 2016-01-04 11:35:57 +01:00
Leo Famulari 77553dff86 gnu: samba: Update to 4.3.3. 
Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.

* gnu/packages/samba.scm (samba): Update to 4.3.3.
 2016-01-03 14:59:49 -05:00
Leo Famulari f6cddbefcc gnu: ldb: Update to 1.1.24. 
Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.

* gnu/packages/samba.scm (ldb): Update to 1.2.24.
 2016-01-03 14:59:49 -05:00
Ludovic Courtès 53334dd6e9 Merge branch 'master' into core-updates 2016-01-03 14:53:03 +01:00
Ludovic Courtès 1575dcd134 gnu: grep: Skip timing-sensitive test. 
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw>.

* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
 2016-01-03 14:50:29 +01:00
Ludovic Courtès dd1937d75d gnu: pkg-config: Update to 0.29. 
* gnu/packages/pkg-config.scm (%pkg-config): Update to 0.29.
 2016-01-03 14:44:22 +01:00
Eric Bavier 8d0801ab23 gnu: libgc: Enable C++ support. 
* gnu/packages/bdw-gc.scm (libgc-7.2, libgc)[arguments]: Add
  --enable-cplusplus to #:configure-flags.
 2016-01-02 16:06:11 -06:00
Eric Bavier 209778717a gnu: Add Asymptote. 
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-02 16:04:55 -06:00
Erik Edrosa b989390889 gnu: Add python-markdown. 
* gnu/packages/python.scm (python-markdown, python2-markdown): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-01-02 00:07:29 -05:00
宋文武 05d48c5243 gnu: love: Update to 0.10.0. 
* gnu/packages/game-development.scm (love): Update to 0.10.0.
 2016-01-02 10:31:53 +08:00
Ludovic Courtès 319007c507 gnu: guile-ssh: Update to 0.9.0. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.9.0.
 2016-01-01 22:59:20 +01:00
Ludovic Courtès e80d2555f5 gnu: findutils: Update to 4.6.0. 
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
 2016-01-01 01:05:06 +01:00
Fabian Harfert 45147b0caa gnu: Add xaos. 
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-12-31 11:29:43 +03:00
Leo Famulari 658212ebf7 gnu: Move cursynth to (gnu packages music). 
* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
 2015-12-30 21:26:05 -05:00
Leo Famulari 2ef8bbc3ae gnu: libcue: Update source URL. 
* gnu/packages/cdrom.scm (libcue)[source]: Update URL.
 2015-12-30 19:59:58 -05:00
Efraim Flashner 34da7af4c1 gnu: python-mox3: Update to 0.13.0. 
* gnu/packages/openstack.scm (python-mox3): Update to 0.13.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 13fcc6df37 gnu: python-fixtures: Update to 1.4.0. 
* gnu/packages/python.scm (python-fixtures): Update to 1.4.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner af1ab77312 gnu: python-pyld: Update to 0.6.8. 
* gnu/packages/python.scm (python-pyld): Update to 0.6.8.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 1780424035 gnu: python-virtualenv: Update to 13.1.2. 
* gnu/packages/python.scm (python-virtualenv): Update to 13.1.2.
[arguments]: Custom test command.
[inputs]: Remove python-nose, add python-pytest.
 2015-12-30 23:16:09 +02:00
Efraim Flashner ec89a25cad gnu: python-oslosphinx: Update to 4.2.0. 
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.2.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner f66bb273de gnu: python-oslo.serialization: Update to 2.2.0. 
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.2.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 4768988887 gnu: python-os-testr: Update to 0.5.0. 
* gnu/packages/openstack.scm (python-os-testr): Update to 0.5.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 45f4c28d80 gnu: python-stevedore: Update to 1.10.0. 
* gnu/packages/openstack.scm (python-stevedore): Update to 1.10.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 622d21bba9 gnu: python-tempest-lib: Update to 0.12.0. 
* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.12.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 690e8c6637 gnu: python-passlib: Update to 1.6.5. 
* gnu/packages/python.scm (python-passlib): Update to 1.6.5.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 03fd001cef gnu: python-libarchive-c: Update to 2.2. 
* gnu/packages/python.scm (python-libarchive-c): Update to 2.2.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 99b00dc796 gnu: python-tlsh: Update to 3.4.4. 
* gnu/packages/python.scm (python-tlsh): Update to 3.4.4.
 2015-12-30 23:16:09 +02:00
Efraim Flashner b8834c219e gnu: python-webob: Update to 1.5.1. 
* gnu/packages/python.scm (python-webob): Update to 1.5.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 1b99553317 gnu: python-flake8: Update to 2.5.1. 
* gnu/packages/python.scm (python-flake8): Update to 2.5.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 2abc397225 gnu: python-pyflakes: Update to 1.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 1.0.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 3655ee76a6 gnu: python-pyzmq: Update to 15.1.0. 
* gnu/packages/python.scm (python-pyzmq): Update to 15.1.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner f56777be0a gnu: python-psutil: Update to 3.3.0. 
* gnu/packages/python.scm (python-psutil): Update to 3.3.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 38eb6919e1 gnu: python-pycparser: Update to 2.14. 
* gnu/packages/python.scm (python-pycparser): Update to 2.14.
 2015-12-30 23:16:09 +02:00
Efraim Flashner d9aa097b96 gnu: python-pyrfc3339: Update to 1.0. 
* gnu/packages/python.scm (python-pyrfc3339): Update to 1.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner f7cb984133 gnu: python-nose: Update to 1.3.7. 
* gnu/packages/python.scm (python-nose): Update to 1.3.7.
 2015-12-30 23:16:09 +02:00
Efraim Flashner ec3bcbc7e4 gnu: python-rpy2: Update to 2.7.6. 
* gnu/packages/python.scm (python-rpy2): Update to 2.7.6.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 11f97c27bc gnu: pelican: Update to 3.6.3. 
* gnu/packages/python.scm (pelican): Update to 3.6.3.
 2015-12-30 23:16:09 +02:00
Efraim Flashner e98149b3a4 gnu: python-jinja2: Update to 2.8. 
* gnu/packages/python.scm (python-jinja2): Update to 2.8.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 8925d4f345 gnu: python-unidecode: Update to 0.04.18. 
* gnu/packages/python.scm (python-unidecode): Update to 0.04.18.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 7fb9ff4dea gnu: python-blinker: Update to 1.4. 
* gnu/packages/python.scm (python-blinker): Update to 1.4.
 2015-12-30 23:16:09 +02:00
Efraim Flashner c2a9c1c0bc gnu: python-dateutil: Update to 2.4.2. 
* gnu/packages/python.scm (python-dateutil): Update to 2.4.2.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 2c3d13fe1b gnu: isync: Update to 1.2.1. 
* gnu/packages/mail.scm (isync): Update to 1.2.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner aadf46253a gnu: getmail: Update to 4.48.0. 
* gnu/packages/mail.scm (getmail): Update to 4.48.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 866fade9e5 gnu: notmuch: Update to 0.21. 
* gnu/packages/mail.scm (notmuch): Update to 0.21.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 70e9d258c4 gnu: youtube-dl: Update to 2015.12.29. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.29.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 31e98ca63f gnu: offlineimap: Update to 6.6.1. 
* gnu/packages/mail.scm (offlineimap): Update to 6.6.1.
 2015-12-30 23:16:09 +02:00
Ricardo Wurmus 3d5fd24090 gnu: Add Fritzing. 
* gnu/packages/engineering.scm (fritzing): New variable.
 2015-12-30 20:41:33 +01:00
Ludovic Courtès 0084aaf3d4 gnu: Add lcov. 
* gnu/packages/code.scm (lcov): New variable.
 2015-12-30 19:14:04 +01:00
Alex Vong 0c1910ed03 gnu: ladspa: Update URLs. 
* gnu/packages/audio.scm (ladspa): Update source and home page url.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-12-30 18:18:38 +01:00
Andreas Enge f95dad899b gnu: texlive: Patch texmfcnf.lua. 
* gnu/packages/texlive.scm (texlive): Patch texmfcnf.lua to point to the
  absolute texlive-texmf tree.
 2015-12-30 11:24:26 +01:00
Mark H Weaver 826244f01a gnu: fuse: Fix source URI. 
This is a followup to commit b7e7d1b9d3.

* gnu/packages/linux.scm (fuse)[source]: Fix source URI.
 2015-12-29 22:25:02 -05:00
Ben Woodcroft 19f4554c94 gnu: Add fraggenescan. 
* gnu/packages/bioinformatics.scm (fraggenescan): New variable.
 2015-12-29 20:14:03 -05:00
Leo Famulari 6819a8ddd6 gnu: Add shntool. 
* gnu/packages/audio.scm (shntool): New variable.
 2015-12-29 19:55:21 -05:00
Leo Famulari 6da16993eb gnu: Add cuetools. 
* gnu/packages/audio.scm (cuetools): New variable.
 2015-12-29 19:55:21 -05:00
Efraim Flashner 11afbbc651 gnu: enlightenment: Update to 0.20.2. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.2.
 2015-12-29 22:52:20 +02:00
Leo Famulari 6959a13271 gnu: sshfs-fuse: Update source URL. 
* gnu/packages/linux.scm (sshfs-fuse)[source]: Update URL.
 2015-12-29 14:20:55 -05:00
Leo Famulari b7e7d1b9d3 gnu: fuse: Update to 2.9.4. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
  [source]: Remove patch.
 2015-12-29 14:20:55 -05:00
Efraim Flashner c7d0bf0071 gnu: youtube-dl: Update to 2015.12.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.23.
 2015-12-29 09:33:10 +02:00
Ricardo Wurmus 6da2e99e2e gnu: tuxguitar: Set missing GCJFLAGS. 
* gnu/packages/music.scm (tuxguitar)[arguments]: Set compiler flags
  "-fsource=1.4" and "-fPIC".
 2015-12-29 07:52:19 +01:00
Ricardo Wurmus 5f1c949866 gnu: tuxguitar: Use "modify-phases" syntax. 
* gnu/packages/music.scm (tuxguitar)[arguments]: Use "modify-phases"
  syntax.
 2015-12-29 07:52:19 +01:00
Leo Famulari c1ff0f2fed gnu: irssi: Update source URL. 
* gnu/packages/irssi.scm (irssi)[source]: Update URL.
 2015-12-27 17:39:03 -05:00
Efraim Flashner 85d42329b3 gnu: elementary: Update to 1.16.1. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.16.1.
 2015-12-27 15:33:20 +02:00
Efraim Flashner c1a064c96e gnu: efl: Update to 1.16.1. 
* gnu/packages/enlightenment.scm (efl): Update to 1.16.1.
 2015-12-27 14:44:29 +02:00
Efraim Flashner e21338bec5 gnu: python-decorator: Update to 4.0.6. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.6.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 2a2d098195 gnu: python-exif-read: Update to 2.1.2. 
* gnu/packages/python.scm (python-exif-read): Update to 2.1.2.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 82a3c582a3 gnu: python-coverage: Update to 4.0.3. 
* gnu/packages/python.scm (python-coverage): Update to 4.0.3.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 9f44228512 gnu: python-pygments: Update to 2.0.2. 
* gnu/packages/python.scm (python-pygments): Update to 2.0.2.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 2d3a437c79 gnu: python-cffi: Update to 1.4.2. 
* gnu/packages/python.scm (python-cffi): Update to 1.4.2.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 71c8a804b9 gnu: python-py: Update to 1.4.31. 
* gnu/packages/python.scm (python-py): Update to 1.4.31.
 2015-12-26 23:10:53 +02:00
Leo Famulari b8ae816b0e gnu: tinyproxy: Update source URL. 
* gnu/packages/web.scm (tinyproxy)[source]: Update URL.
 2015-12-26 11:47:42 -05:00
Leo Famulari 4beb9f3a3b gnu: zsh: Add alternate source URL. 
* gnu/packages/zsh.scm (zsh)[source]: Add alternate URL.
 2015-12-26 11:26:57 -05:00
Leo Famulari 7b10135386 gnu: znc: Update to 1.6.2. 
* gnu/packages/messaging.scm (znc): Update to 1.6.2.
 2015-12-26 11:24:55 -05:00
Leo Famulari eb2371bcdd gnu: znc: Update source URL. 
* gnu/packages/messaging.scm (znc)[source]: Update URL.
 2015-12-26 11:24:55 -05:00
Mark H Weaver ce755b609d gnu: libpng: Update to 1.5.26 [fixes CVE-2015-8472 and CVE-2015-8540]. 
* gnu/packages/image.scm (libpng): Update to 1.5.26.
 2015-12-26 11:01:01 -05:00
Efraim Flashner fe08b6e1eb gnu: gdk-pixbuf: Update to 2.32.3. (fixes CVE-2015-4491) 
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.32.3.
 2015-12-26 11:01:01 -05:00
Efraim Flashner 4d6b8da717 gnu: cups-filters: Update to 1.4.0. (fixes CVE-2015-8560) 
* gnu/packages/cups.scm (cups-filters): Update to 1.4.0.
 2015-12-26 11:01:01 -05:00
Leo Famulari 75bae747cc gnu: xlockmore: Update to 5.46. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.46.
 2015-12-26 02:22:20 -05:00
Leo Famulari 20c043587a gnu: xlockmore: Add alternate URL. 
* gnu/packages/xdisorg.scm (xlockmore)[source]: Add alternate URL.
 2015-12-26 02:17:46 -05:00
Leo Famulari d642053386 gnu: wmctrl: Update source URL. 
* gnu/packages/xdisorg.scm (wmctrl)[source]: Update URL.
 2015-12-26 01:55:14 -05:00
Leo Famulari 3759bfad32 gnu: colordiff: Update to 1.0.16. 
* gnu/packages/patchutils.scm (colordiff): Update to 1.0.16.
 2015-12-26 00:10:32 -05:00
Leo Famulari 8d479d27ca gnu: colordiff: Update source URL. 
* gnu/packages/patchutils.scm (colordiff)[source]: Update URL.
 2015-12-26 00:10:09 -05:00
Leo Famulari 97a79b19d1 gnu: opus-tools: Update source URL. 
* gnu/packages/xiph.sch (opus-tools)[source]: Update URL.
 2015-12-26 00:00:21 -05:00
Leo Famulari 5b0bcecdd1 gnu: moreutils: Update to 0.57. 
* gnu/packages/moreutils.scm (moreutils): Update to 0.57.
 2015-12-25 23:59:26 -05:00
Leo Famulari d4ec43392b gnu: lynx: Update source URL. 
* gnu/packages/lynx.scm (lynx)[source]: Update URL.
 2015-12-25 23:58:33 -05:00
Leo Famulari 4150ac88bc gnu: libsodium: Add alternate URL. 
* gnu/packages/crypto.scm (libsodium)[source]: Add alternate URL.
 2015-12-25 23:56:15 -05:00
Leo Famulari 8fa16f63e7 gnu: libev: Update source URL. 
* gnu/packages/libevent.scm (libev)[source]: Update URL.
 2015-12-25 23:51:08 -05:00
Leo Famulari 8f26f23926 gnu: hevea: Update URL. 
* gnu/packages/ocaml.scm (hevea)[source]: Update URL.
 2015-12-25 23:46:55 -05:00
Leo Famulari 513f8ab4f3 gnu: exim: Update to 4.86. 
* gnu/packages/mail.scm (exim): Update to 4.86.
 2015-12-25 23:42:17 -05:00
Leo Famulari fc6fdc05cb gnu: exim: Add alternate URL. 
* gnu/packages/mail.scm (exim)[source]: Add alternate URL.
 2015-12-25 23:42:17 -05:00
Leo Famulari e1921a384c gnu: eudev: Update home-page URL. 
* gnu/packages/linux.scm (eudev)[home-page]: Add up-to-date URL.
 2015-12-25 23:40:32 -05:00
Ricardo Wurmus 9625029401 gnu: Add Bristol. 
* gnu/packages/music.scm (bristol): New variable.
 2015-12-24 19:39:17 +01:00
Ricardo Wurmus 398abcf81a gnu: lilypond: Update to 2.19.33. 
* gnu/packages/music.scm (lilypond): Update to 2.19.33.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus 409be57b09 gnu: lilypond: Build info pages with images. 
* gnu/packages/music.scm (lilypond)[arguments]: Set "conf" and "out" to
  "www"; rename phase "hardcode-path-to-gs" to "fix-path-references";
  fix reference to "/bin/sh"; add phase "install-info".
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus c493679f9a gnu: Add Yoshimi. 
* gnu/packages/music.scm (yoshimi): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus 6a91494898 gnu: Add XML::Compile::WSDL11. 
* gnu/packages/xml.scm (perl-xml-compile-wsdl11): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus baeab9b8b9 gnu: Add XML::Compile::SOAP. 
* gnu/packages/xml.scm (perl-xml-compile-soap): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus c1d41b5df3 gnu: Add XML::Compile::Cache. 
* gnu/packages/xml.scm (perl-xml-compile-cache): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus f7c4dc2f55 gnu: Add XML::LibXML::Simple. 
* gnu/packages/xml.scm (perl-xml-libxml-simple): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus 8aad646637 gnu: Add File::Slurp::Tiny. 
* gnu/packages/perl.scm (perl-file-slurp-tiny): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus a05996e000 gnu: Add HTML::Template. 
* gnu/packages/web.scm (perl-html-template): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus b494a5f1bd gnu: Add XML::Compile. 
* gnu/packages/xml.scm (perl-xml-compile): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus 649e1676bc gnu: Add XML::Compile::Tester. 
* gnu/packages/xml.scm (perl-xml-compile-tester): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus dd686c0838 gnu: Add Log::Report. 
* gnu/packages/perl.scm (perl-log-report): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus fc2448bf89 gnu: Add Log::Report::Optional. 
* gnu/packages/perl.scm (perl-log-report-optional): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus c47b85de0c gnu: Add String::Print. 
* gnu/packages/perl.scm (perl-string-print): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus e92468d803 gnu: Add Unicode::LineBreak. 
* gnu/packages/perl.scm (perl-unicode-linebreak): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus 55932aeee1 gnu: Add MIME::Charset. 
* gnu/packages/perl.scm (perl-mime-charset): New variable.
 2015-12-24 10:10:39 +01:00
Leo Famulari 8f1640ed8f gnu: gusb: Update home-page. 
* gnu/packages/gnome.scm (gusb)[home-page]: Update home-page.
 2015-12-24 02:16:57 -05:00
Mark H Weaver 097190417f gnu: icecat: Update to 38.5.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
  gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
  [source]: Remove patches.
 2015-12-23 18:19:59 -05:00
Mark H Weaver bba5de0e43 gnu: nss: Update to 3.20.2. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.20.2.
 2015-12-23 18:19:59 -05:00
Ben Woodcroft 1b9d4e2e20 gnu: ruby-nokogiri: Upgrade to 1.6.7.1. 
* gnu/packages/ruby.scm (ruby-nokogiri): Upgrade to 1.6.7.1.
 2015-12-23 14:02:10 -05:00
Ben Woodcroft d000fc92b1 gnu: Add ruby-mini-portile-2. 
* gnu/packages/ruby.scm (ruby-mini-portile-2): New variable.
 2015-12-23 14:02:06 -05:00
Ricardo Wurmus 4de7aede50 gnu: icedtea7: Update to 2.6.3. 
* gnu/packages/java.scm (icedtea7): Update to 2.6.3.
 2015-12-23 14:57:58 +01:00
Ricardo Wurmus e7173df87a gnu: icedtea6: Update to 1.13.9. 
* gnu/packages/java.scm (icedtea6): Update to 1.13.9.
 2015-12-23 14:57:58 +01:00
Ludovic Courtès 05f1e95638 gnu: guile-2.0: Add "lib/guile/2.0/ccache" to the search path. 
* gnu/packages/guile.scm (guile-2.0)[native-search-paths]: Add
"lib/guile/2.0/ccache" to GUILE_LOAD_COMPILED_PATH.
 2015-12-22 22:29:34 +01:00
Ludovic Courtès 64cb064c0c gnu: python-wrapper: Append "-wrapper" to the underlying package name. 
Reported by Federico Beffa <beffa@ieee.org>.

* gnu/packages/python.scm (wrap-python3): Change the default value of
'name' to include the name of PYTHON.  This disambiguates between
'python-minimal-wrapper' and 'python-wrapper'.
 2015-12-22 22:24:41 +01:00
Efraim Flashner a9257a873f gnu: libmicrohttpd: Update to 0.9.48. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.48.
 2015-12-22 22:50:58 +02:00
Efraim Flashner 0877ef4342 gnu: parallel: Update to 20151222. 
* gnu/packages/parallel.scm (parallel): Update to 20151222.
 2015-12-22 22:47:44 +02:00
Efraim Flashner 419fa59b17 gnu: sipwitch: Update to 1.9.15. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.15.
 2015-12-22 22:45:41 +02:00
Efraim Flashner 99e6f9c828 gnu: ucommon: Update to 7.0.0. 
* gnu/packages/telephony.scm (ucommon): Update to 7.0.0.
[inputs]: Add gnutls.
 2015-12-22 22:39:48 +02:00
Mark H Weaver e54465ff85 gnu: isc-dhcp: Disable parallel build. 
* gnu/packages/admin.scm (isc-dhcp)[arguments]: Disable parallel build.
 2015-12-22 10:45:13 -05:00
Mark H Weaver 6548b1e122 gnu: isc-dhcp: Update to 4.3.3; update bundled bind to 9.9.8-P2. 
Fixes CVE-2015-8000 and CVE-2015-8461.

* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3.
  [inputs]: Add 'bind-source-tarball'.
  [arguments]: Use modify-phases.  Add 'replace-bundled-bind' phase.
  In 'post-configure' phase, avoid hard-coding version numbers of
  bundled bind.
 2015-12-21 19:47:27 -05:00
Mark H Weaver f9a5b18897 gnu: bind-utils: Update to 9.10.3-P2. 
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P2.
  [source]: Use HTTP URI instead of FTP.
 2015-12-21 19:47:26 -05:00
Ricardo Wurmus 8e92cfb101 gnu: Add vmpk. 
* gnu/packages/music.scm (vmpk): New variable.
 2015-12-21 22:09:47 +01:00
Ricardo Wurmus bf76d7802c gnu: Add drumstick. 
* gnu/packages/music.scm (drumstick): New variable.
 2015-12-21 22:09:47 +01:00
Leo Famulari ef9006451f gnu: letsencrypt and acme: Update to 0.1.1. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.1.1.
[source]: Use pypi-uri.
* gnu/packages/tls.scm (acme): Update to 0.1.1.
[source]: Use pypi-uri.
 2015-12-21 14:35:58 -05:00
Efraim Flashner 704989660f gnu: ffmpeg: Update to 2.8.4. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.4.
 2015-12-21 21:30:46 +02:00
Leo Famulari f0150f8724 gnu: grub: Add fix for CVE-2015-8730. 
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
 2015-12-21 12:33:55 -05:00
Ricardo Wurmus e2cd1d0fb9 gnu: Add GenomicRanges. 
* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 0e7d5560de gnu: Add XVector. 
* gnu/packages/bioinformatics.scm (r-xvector): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus bf7764b74f gnu: Add GenomeInfoDb. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 78addcb0eb gnu: Add IRanges. 
* gnu/packages/bioinformatics.scm (r-iranges): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 7485129e4f gnu: Add S4Vectors. 
* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus d29b25c490 gnu: Add BiocGenerics. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 9fba89e829 gnu: Add r-acsnminer. 
* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus 9e47f30b08 gnu: Add r-gridextra. 
* gnu/packages/statistics.scm (r-gridextra): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus b73751c8ff gnu: Add r-gtable. 
* gnu/packages/statistics.scm (r-gtable): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus 77bdb276e9 gnu: Add r-rmarkdown. 
* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
  prevent circular package module imports.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus 4c1f2705b5 gnu: Add r-catools. 
* gnu/packages/statistics.scm (r-catools): New variable.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus bb6d2dadf7 gnu: Add r-bitops. 
* gnu/packages/statistics.scm (r-bitops): New variable.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus 8406138b72 gnu: Add AdaptiveSparsity. 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
 2015-12-21 16:05:38 +01:00
Ricardo Wurmus e22d4ca4c4 gnu: Add r-rcpparmadillo. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
 2015-12-21 16:05:37 +01:00
Ricardo Wurmus b15e47f9e6 gnu: Add armadillo. 
* gnu/packages/maths.scm (armadillo): New variable.
 2015-12-21 15:47:40 +01:00
Ricardo Wurmus 086e498bcf gnu: Add libgit2. 
* gnu/packages/version-control.scm (libgit2): New variable.
 2015-12-21 15:22:14 +01:00
Ben Woodcroft 02f35bb5a7 gnu: mafft: Update to 7.267. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.267.
[arguments]: Don't include mafft-homologs manpage.
[inputs]: Add gawk and grep.
[propagated-inputs]: Add coreutils.
 2015-12-21 15:16:01 +01:00
Mathieu Lirzin 1ef3f91a70 gnu: rxvt-unicode: Install the terminal capability data. 
This provides the necessary terminal capability data, which are required
by ncurses-based applications.

* gnu/packages/xdisorg.scm (rxvt-unicode)[native-inputs]: Add ncurses.
[arguments]: Set the destination of the terminfo files.
[native-search-path]: New field.  Make them automatically available to
the user.
 2015-12-21 13:35:34 +01:00
Efraim Flashner 72d8b5baf4 gnu: msmtp: Update to 1.6.3. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.3.
[inputs]: Add libsecret.
 2015-12-21 09:36:15 +02:00
Efraim Flashner ec92806ae5 gnu: claws-mail: Update to 3.13.1. 
* gnu/packages/mail.scm (claws-mail): Update to 3.13.1.
 2015-12-21 09:17:47 +02:00
Efraim Flashner 56918e26cf gnu: python-cython: Update to 0.23.4. 
* gnu/packages/python.scm (python-cython): Update to 0.23.4.
 2015-12-21 06:55:13 +02:00
David Thompson e99711af22 gnu: ruby: Update to 2.2.4. 
This version fixes CVE-2015-7551.

* gnu/packages/ruby.scm (ruby): Update to 2.2.4.
 2015-12-20 22:40:53 -05:00
Efraim Flashner 54b7f63a72 gnu: offlineimap: Update to 6.6.0. 
* gnu/packages/mail.scm (offlineimap): Update to 6.6.0.
 2015-12-20 21:39:18 +02:00
Efraim Flashner b5d47a5a53 gnu: gnupg: Update to 1.4.20. 
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.20.
 2015-12-20 20:07:31 +02:00
宋文武 a4df575631 gnu: Add gnome-shell. 
* gnu/packages/gnome.scm (gnome-shell): New variable.
 2015-12-20 18:59:22 +08:00
宋文武 b645146f00 gnu: Add gnome-control-center. 
* gnu/packages/gnome.scm (gnome-control-center): New variable.
 2015-12-20 18:59:22 +08:00
宋文武 b96c42605b gnu: Add gnome-bluetooth. 
* gnu/packages/gnome.scm (gnome-bluetooth): New variable.
 2015-12-20 18:59:22 +08:00
宋文武 8e1dd04f45 gnu: Add libgtop. 
* gnu/packages/gnome.scm (libgtop): New variable.
 2015-12-20 18:59:21 +08:00
宋文武 e682327976 gnu: Add colord-gtk. 
* gnu/packages/freedesktop.scm (colord-gtk): New variable.
 2015-12-20 18:59:21 +08:00
宋文武 6976e7d2ff gnu: Add telepathy-logger. 
* gnu/packages/freedesktop.scm (telepathy-logger): New variable.
 2015-12-20 18:59:21 +08:00
Efraim Flashner ff80b96378 gnu: tilda: Update to 1.3.1. 
* gnu/packages/terminals.scm (tilda): Update to 1.3.1.
 2015-12-20 09:40:56 +02:00
Ludovic Courtès 604d20a251 gnu: Add tlsdate. 
* gnu/packages/ntp.scm (tlsdate): New variable.
 2015-12-19 23:16:18 +01:00
宋文武 04dc6c9992 gnu: mpv: Update to 0.14.0. 
* gnu/packages/video.scm (mpv): Update to 0.14.0.
 2015-12-19 12:21:59 +08:00
宋文武 599fd84227 gnu: mpv: Fix build by using pkg-config for smbclient. 
This is a followup to commit 710964d.

* gnu/packages/video.scm (mpv)[arguments]: Remove 'patch-wscript' phase.
 2015-12-19 12:15:59 +08:00
Ludovic Courtès 7db0799dc9 gnu: agg: Update URLs. 
* gnu/packages/graphics.scm (agg)[source, home-page]: Add up-to-date
URLs.
 2015-12-19 00:42:10 +01:00
Ludovic Courtès 3ac732715d gnu: Use #:prefix when importing (guix licenses). 
This works around a problem with #:hide, whereby Guile would report
'zlib', 'openssl', and/or 'expat as colliding bindings at run time
despite the #:hide.

* gnu/packages/linux.scm: Use #:prefix license for (guix licenses).
* gnu/packages/haskell.scm: Likewise.
 2015-12-19 00:34:00 +01:00
Ludovic Courtès 793bcc1933 gnu: Do not #:select from (gnu packages …) modules. 
This is to avoid <http://bugs.gnu.org/15540>.

* gnu/packages/bittorrent.scm: Do not #:select from (gnu packages
compression).
* gnu/packages/dictionaries.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/gimp.scm: Likewise.
* gnu/packages/haskell.scm: Likewise.
 2015-12-19 00:22:42 +01:00
Ludovic Courtès 53088d0045 gnu: commencement: Build Bison deterministically. 
Before that entries in liby.a would contain the build time.

* gnu/packages/commencement.scm (bison-boot1): Add #:make-flags.
 2015-12-19 00:02:37 +01:00
Ludovic Courtès f1e0c85ad2 gnu: commencement: Build the final Bash with "bison-boot1". 
This removes a round of Bison + Flex + M4 + Perl rebuild.

* gnu/packages/commencement.scm (bash-final): Add 'native-inputs'
field pointing to BISON-BOOT1.
 2015-12-18 23:57:11 +01:00
Ludovic Courtès 32243bfb57 gnu: commencement: Avoid redundant Perl rebuild. 
This removes a redundant (yet different) "perl-boot0" node from the
early derivation graph.

* gnu/packages/commencement.scm (bison-boot1): Move 'native-inputs'
field to the final package.  Previously PERL-BOOT0 got rebuilt with
%BOOT0-INPUTS, leading to a different derivation.
(static-bash-for-glibc): Likewise.
 2015-12-18 23:53:00 +01:00
Ludovic Courtès 09964b4fc6 gnu: commencement: Add "-boot0" to early packages. 
* gnu/packages/commencement.scm (diffutils-boot0)[name]: New field.
* gnu/packages/commencement.scm (findutils-boot0, file-boot0,
perl-boot0): Change 'name' field to include "-boot0".
 2015-12-18 22:19:07 +01:00
Ludovic Courtès 009b53fd1c gnu: gcc: Prefer language-specific variables over 'CPATH'. 
Suggested by Andy Wingo <wingo@igalia.com>.
Fixes <http://bugs.gnu.org/22186>.

* gnu/packages/gcc.scm (gcc-4.7)[native-search-paths]: Remove 'CPATH';
add 'C_INCLUDE_PATH' and 'CPLUS_INCLUDE_PATH' instead.
* gnu/packages/gcc.scm (custom-gcc): Add 'search-paths' parameter and
honor it.
(%generic-search-paths): New variable.
(gfortran-4.8, gfortran-4.9, gfortran, gfortran-5, gccgo-4.8): Pass
%GENERIC-SEARCH-PATHS to 'custom-gcc'.
(gcj)[native-search-paths]: New field.
(gcc-objc-4.8, gcc-objc++-4.8): Use 'OBJC_INCLUDE_PATH' and
'OBJCPLUS_INCLUDE_PATH', respectively.
 2015-12-18 21:38:49 +01:00
Ludovic Courtès 8309c3899a gnu: commencement: Use GMP 6.0.0a for bootstrapping. 
* gnu/packages/multiprecision.scm (gmp-6.0): New variable.
* gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated
from before e414a7d.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-18 18:38:22 +01:00
Ludovic Courtès bf46f74160 gnu: key-mon: Remove unnecessary propagated inputs. 
* gnu/packages/key-mon.scm (key-mon)[propagated-inputs]: Rename to...
[inputs]: ... this.  Propagated was unnecessary since the 'key-mon'
program is wrapped.
 2015-12-18 11:04:22 +01:00
Ludovic Courtès 594e7b479a gnu: python2-pygtk: Add "doc" output. 
* gnu/packages/gtk.scm (python2-pygtk)[outputs]: New field.
[arguments]: Add 'set-gtk-doc-directory' phase.
 2015-12-18 11:04:22 +01:00
Ludovic Courtès ae115bc75a gnu: python2-pygtk: Use 'modify-phases'. 
* gnu/packages/gtk.scm (python2-pygtk)[arguments]: Use 'modify-phases'.
 2015-12-18 11:04:22 +01:00
Ludovic Courtès be4fbbe01b gnu: gimp: Add "doc" output. 
* gnu/packages/gimp.scm (gimp)[outputs, arguments]: New fields.
 2015-12-18 11:04:22 +01:00
Ludovic Courtès 72a06d3e32 gnu: goffice: Add "doc" output. 
* gnu/packages/gnome.scm (goffice)[outputs, arguments]: New fields.
(goffice-0.8)[arguments]: Append arguments from GOFFICE.
 2015-12-18 11:04:22 +01:00
Andy Wingo fd5c70f867 gnu: dovecot: Add linux-pam to inputs. 
* gnu/packages/mail.scm (dovecot): Add linux-pam to inputs, enabling the
  PAM auth driver.
 2015-12-18 09:24:27 +01:00
David Thompson 6a51e95b66 gnu: sdl-image: Add libwebp input. 
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Add libwebp.
 2015-12-17 22:32:05 -05:00
David Thompson d3f6a1defb gnu: Add sdl2-ttf. 
* gnu/packages/sdl.scm (sdl2-ttf): New variable.
 2015-12-17 22:01:49 -05:00
David Thompson 855e293981 gnu: Add sdl2-mixer. 
* gnu/packages/sdl.scm (sdl2-mixer): New variable.
 2015-12-17 22:01:49 -05:00
David Thompson 6813f70a5c gnu: Add sdl2-image. 
* gnu/packages/sdl.scm (propagated-inputs-with-sdl2): New procedure.
(sdl2-image): New variable.
 2015-12-17 22:01:48 -05:00
宋文武 710964d179 gnu: samba: Update to 4.3.2. 
* gnu/packages/samba.scm (samba): Update to 4.3.2.  Add more inputs.
[arguments]: Remove #:modules and #:imported-modules.  Remove 'chdir'
and 'add-lib-to-runpath' from #:phases.  Use 'modify-phases' syntax.
 2015-12-18 10:30:17 +08:00
宋文武 52513595ad gnu: Add ldb. 
* gnu/packages/samba.scm (ldb): New variable.
 2015-12-18 10:30:17 +08:00
宋文武 0674b3c96d gnu: Add tevent. 
* gnu/packages/samba.scm (tevent): New variable.
 2015-12-18 10:30:17 +08:00
宋文武 095da02342 gnu: talloc: Update to 2.1.5. 
* gnu/packages/samba.scm (talloc): Update to 2.1.5.
[arguments]: Modify wscript to skip the 'magic_differs' test.
 2015-12-18 10:30:17 +08:00
宋文武 960ae0cde4 gnu: talloc: Use 'modify-phases' syntax. 
* gnu/packages/samba.scm (talloc)[arguments]: Use 'modify-phases' syntax.
 2015-12-18 10:30:17 +08:00
宋文武 c2fb20761a gnu: Add libpwquality. 
* gnu/packages/password-utils.scm (libpwquality): New variable.
 2015-12-18 10:30:16 +08:00
宋文武 72029c8bf1 gnu: Add cracklib. 
* gnu/packages/password-utils.scm (cracklib): New variable.
 2015-12-18 10:30:16 +08:00
David Thompson f464016d60 gnu: Add obs. 
* gnu/packages/video.scm (obs): New variable.
 2015-12-17 15:01:08 -05:00
Mark H Weaver 3faf214a0b gnu: icecat: Add fixes for several security flaws. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-12-17 14:12:06 -05:00
Mark H Weaver cbbe1a1c2c gnu: subversion: Update to 1.8.15 [fixes CVE-2015-5343]. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.15.
 2015-12-17 14:12:06 -05:00
Ricardo Wurmus b809cc9add gnu: ruby-unf-ext: Build extension. 
* gnu/packages/ruby.scm (ruby-unf-ext)[arguments]: Add phase "build-ext"
  to build "unf_ext.so".
 2015-12-17 14:26:21 +01:00
Eric Bavier 44157e9f3c gnu: Add cpulimit. 
* gnu/packages/admin.scm (cpulimit): New variable.
 2015-12-16 20:57:51 -06:00
Ludovic Courtès c5b65f7e2b gnu: glibc: Remove timestamp from 'nscd' binary. 
This makes libc bit-for-bit reproducible per '--rounds=2'.

* gnu/packages/base.scm (glibc)[arguments] <pre-configure>: Remove
__DATE__ and __TIME__ from nscd_stat.c.
 2015-12-16 22:05:30 +01:00
Mark H Weaver 8ae95578a7 gnu: linux-libre: Update to 4.3.3. 
* gnu/packages/linux.scm (linux-libre): Update to 4.3.3.
 2015-12-16 10:47:15 -05:00
Ludovic Courtès 6042f40bfa gnu: pcre: Add "doc" output. 
* gnu/packages/pcre.scm (pcre)[outputs]: New field.
 2015-12-15 23:35:09 +01:00
Ludovic Courtès 0573bb5e61 gnu: util-linux: Do not build static libraries. 
* gnu/packages/linux.scm (util-linux)[arguments]: Pass --disable-static.
 2015-12-15 23:28:29 +01:00
Ludovic Courtès d7170f449c gnu: gettext: Add "doc" output. 
* gnu/packages/gettext.scm (gnu-gettext)[outputs]: New field.
 2015-12-15 23:12:20 +01:00
Ludovic Courtès 27ec9624ca gnu: ncurses: Add "doc" output. 
* gnu/packages/ncurses.scm (ncurses)[outputs]: New field.
[arguments] <configure>: Replace standard 'configure' phase.
<remove-shebang-phase>: Remove "mandir=" line from 'ncursesw6-config'.
 2015-12-15 23:02:51 +01:00
Ludovic Courtès de6d9f4553 gnu: ncurses: Add 'TERMINFO_DIRS' search path variable. 
* gnu/packages/ncurses.scm (ncurses)[native-search-paths]: New field.
 2015-12-15 22:27:31 +01:00
Ludovic Courtès 4d28b97c46 gnu: bash: Add "doc" output. 
* gnu/packages/bash.scm (bash)[outputs]: Add "doc" output.
 2015-12-15 22:22:59 +01:00
Federico Beffa fceac88039 gnu: python-ipython: Patch 'ctypes' bug. 
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: New patch.
* gnu/packages/python.scm (python-ipython): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-15 18:05:42 +01:00
Ludovic Courtès 304e4f5135 gnu: grep: Add missing dependency on Perl. 
* gnu/packages/base.scm (grep)[native-inputs]: New field.
* gnu/packages/commencement.scm (grep-final): Likewise.
 2015-12-15 18:04:28 +01:00
Ludovic Courtès a2a9bba43c gnu: bash: Update to patch level 42. 
* gnu/packages/bash.scm (%patch-series-4.3): Add patches 40 to 42.
 2015-12-15 17:59:49 +01:00
Efraim Flashner 5bd88cf1e3 gnu: python-click: Update to 6.2. 
* gnu/packages/python.scm (python-click): Update to 6.2.
[source]: Change to pypi syntax.
 2015-12-15 18:31:13 +02:00
Efraim Flashner 664e6c3a95 gnu: python-keyring: Update to 5.7.1. 
* gnu/packages/python.scm (python-keyring): Update to 5.7.1.
[source]: Change to pypi syntax.
[native-inputs]: Add python-setuptools-scm.
[arguments]: Remove argument to replace unpack with unzip.
 2015-12-15 18:31:13 +02:00
宋文武 ba3cb5ab5c gnu: gnome-session: Add input gsettings-desktop-schemas. 
* gnu/packages/gnome.scm (gnome-session)[build-system]: Switch to
  GLIB-OR-GTK-BUILD-SYSTEM.
[inputs]: Add gsettings-desktop-schemas.
 2015-12-15 21:44:03 +08:00
宋文武 9a3a8b8edd gnu: clutter-gtk: Propagate inputs. 
* gnu/packages/gnome.scm (clutter-gtk): Move clutter and gtk+ to 'propagated-inputs'.
 2015-12-15 21:42:02 +08:00
宋文武 ca473fc21d gnu: tdb: Update to 1.3.8. 
* gnu/packages/databases.scm (tdb): Update to 1.3.8.
[source]: Switch to https URI.
 2015-12-15 21:16:42 +08:00
Alex Vong 2ad9515c50 gnu: youtube-dl: Install man pages and completion files. 
* gnu/packages/video.scm (youtube-dl) [arguments]: Add
fix-the-data-directories phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-12-15 13:45:20 +01:00
Efraim Flashner 75f52fca95 gnu: enlightenment: Update to 0.20.1. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.1.
 2015-12-15 11:45:44 +02:00
Leo Famulari a036e59da7 gnu: tmux: Update to 2.1. 
* gnu/packages/tmux.scm (tmux): Update to 2.1.
 2015-12-14 23:23:00 -05:00
Ricardo Wurmus 0c4e762570 gnu: Add ruby-redcloth. 
* gnu/packages/ruby.scm (ruby-redcloth): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus d56ff88b6c gnu: Add ruby-sanitize. 
* gnu/packages/ruby.scm (ruby-sanitize): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus ac09beba84 gnu: Add ruby-pygmentize. 
* gnu/packages/ruby.scm (ruby-pygmentize): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 0c80451e81 gnu: Add ruby-cutest. 
* gnu/packages/ruby.scm (ruby-cutest): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus ad686ef3fc gnu: Add ruby-clap. 
* gnu/packages/ruby.scm (ruby-clap): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus c2c4e5b2ee gnu: Add ruby-nokogumbo. 
* gnu/packages/ruby.scm (ruby-nokogumbo): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus e1c63590ef gnu: Add Gumbo Parser. 
* gnu/packages/web.scm (gumbo-parser): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 3996f0aadc gnu: Add ruby-crass. 
* gnu/packages/ruby.scm (ruby-crass): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus f60f500222 gnu: Add ruby-nokogiri-diff. 
* gnu/packages/ruby.scm (ruby-nokogiri-diff): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 2632a06712 gnu: Add ruby-tdiff. 
* gnu/packages/ruby.scm (ruby-tdiff): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 3a6989ce3a gnu: Add ruby-unf-ext. 
* gnu/packages/ruby.scm (ruby-unf-ext): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 5799bc2b1f gnu: Add ruby-netrc. 
* gnu/packages/ruby.scm (ruby-netrc): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 051deeb79d gnu: Add ruby-guard. 
* gnu/packages/ruby.scm (ruby-guard): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus cf1a01f48c gnu: ruby-listen: Add rb-fsevent to inputs. 
* gnu/packages/ruby.scm (ruby-listen)[propagated-inputs]: Add
  "ruby-rb-fsevent".
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 16b324cdf4 gnu: Add ruby-rb-fsevent. 
* gnu/packages/ruby.scm (ruby-rb-fsevent): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus b004fb6a8a gnu: Add ruby-saikuro-treemap. 
* gnu/packages/ruby.scm (ruby-saikuro-treemap): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 763624f566 gnu: Add ruby-json-pure. 
* gnu/packages/ruby.scm (ruby-json-pure): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 53239b5f96 gnu: Add ruby-utils. 
* gnu/packages/ruby.scm (ruby-utils): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 6e376ca46a gnu: Add ruby-pstree. 
* gnu/packages/ruby.scm (ruby-pstree): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus fd83a212bc gnu: Add ruby-term-ansicolor. 
* gnu/packages/ruby.scm (ruby-term-ansicolor): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus d8cafe29df gnu: Add ruby-minitest-tu-shim. 
* gnu/packages/ruby.scm (ruby-minitest-tu-shim): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus bc8277e458 gnu: Add ruby-gem-hadar. 
* gnu/packages/ruby.scm (ruby-gem-hadar): New variable.
 2015-12-14 14:06:29 +01:00
Ricardo Wurmus 1db6e09fa9 gnu: Add ruby-minitest-4. 
* gnu/packages/ruby.scm (ruby-minitest-4): New variable.
 2015-12-14 14:06:29 +01:00
Efraim Flashner 9c1c2a7f8d gnu: bluez: Update to 5.36. 
* gnu/packages/linux.scm (bluez): Update to 5.36.
[source]: Remove patch.
* gnu/packages/patches/bluez-tests.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-12-14 11:06:20 +02:00
Efraim Flashner ebacb0de4c gnu: powertop: Update to 2.8. 
* gnu/packages/linux.scm (powertop): Update to 2.8.
 2015-12-14 11:06:20 +02:00
Chris Marusich 03f964a511 gnu: Add python-contextlib2. 
* gnu/packages/python.scm (python-contextlib2, python2-contextlib2):
  New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-12-14 09:43:24 +01:00
Efraim Flashner b431e3a08d gnu: gcc-5: Update to 5.3.0. 
* gnu/packages/gcc.scm (gcc-5): Update to 5.3.0.
 2015-12-14 07:32:01 +02:00
Florian Paul Schmidt 6645753b46 gnu: Add redshift. 
* gnu/packages/xdisorg.scm (redshift): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-12-14 00:31:36 +01:00
宋文武 1509a1dc82 gnu: Add modem-manager. 
* gnu/packages/freedesktop.scm (modem-manager): New variable.
 2015-12-13 23:26:28 +08:00
宋文武 5302c5ffd1 gnu: Add libqmi. 
* gnu/packages/freedesktop.scm (libqmi): New variable.
 2015-12-13 23:26:28 +08:00
宋文武 f3ad149057 gnu: Add libmbim. 
* gnu/packages/freedesktop.scm (libmbim): New variable.
 2015-12-13 23:26:28 +08:00
宋文武 df12f04a0c gnu: Add gdm. 
* gnu/packages/gnome.scm (gdm): New variable.
 2015-12-13 23:26:28 +08:00
Amirouche BOUBEKKI dec1e2b352 gnu: Add g-wrap. 
* gnu/packages/guile.scm (g-wrap): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-12-13 15:20:44 +01:00
Ludovic Courtès 5568151f5b gnu: wireless-regdb: Build sequentially. 
Fixes <http://bugs.gnu.org/22126>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/linux.scm (wireless-regdb)[source]: Add 'snippet'.
[arguments]: Add #:parallel-build?.
 2015-12-13 15:20:44 +01:00
Efraim Flashner b1b9ca8e01 gnu: adwaita-icon-theme: Update to 3.18.0. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.18.0.
 2015-12-13 14:19:06 +02:00
Efraim Flashner 5d73ac0688 gnu: eog: Update to 3.18.1. 
* gnu/packages/gnome.scm (eog): Update to 3.18.1.
 2015-12-13 13:51:13 +02:00
Efraim Flashner 3acae17019 gnu: devhelp: Update to 3.18.1. 
* gnu/packages/gnome.scm (devhelp): Update to 3.18.1.
 2015-12-13 13:40:30 +02:00
Efraim Flashner bcff53e03f gnu: aisleriot: Update to 3.18.2. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.18.2.
 2015-12-13 13:35:11 +02:00
Efraim Flashner daee4191e1 gnu: gnome-mines: Update to 3.18.2. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.18.2.
 2015-12-13 13:18:57 +02:00
Efraim Flashner 34b979b903 gnu: seahorse: Add support for keyservers, gnupg2 and ldap. 
* gnu/packages/gnome.scm (seahorse): Do it.
[inputs]: Remove gnupg-1, add gnupg, openldap, libsoup.
 2015-12-13 13:02:14 +02:00
Efraim Flashner 017d779c22 gnu: seahorse: Update to 3.18.0. 
* gnu/packages/gnome.scm (seahorse): Update to 3.18.0.
 2015-12-13 13:00:08 +02:00
Efraim Flashner 2e221beed5 gnu: gnome-terminal: Update to 3.18.2. 
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.18.2.
 2015-12-13 12:40:04 +02:00
Ludovic Courtès 775e6fe456 gnu: commencement: Initial Texinfo uses initial Perl. 
* gnu/packages/commencement.scm (texinfo-boot0)[inputs]: Use
PERL-BOOT0.
 2015-12-13 11:35:53 +01:00
Efraim Flashner 1a0b2d8241 gnu: gnome-keyring: Update to 3.18.3. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.18.3.
[inputs]: Add linux-pam.
 2015-12-13 12:34:29 +02:00
Ludovic Courtès 4187fe750f gnu: perl: Build deterministically, and make byproducts deterministic. 
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.

* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès 4de3507483 gnu: perl: Update to 5.22.0. 
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-12-13 11:28:54 +01:00
Efraim Flashner e0b6e26403 gnu: gnome-klotski: Update to 3.18.2. 
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.18.2.
 2015-12-13 12:24:47 +02:00
Efraim Flashner af83490d7e gnu: gnome-common: Update to 3.18.0. 
* gnu/packages/gnome.scm (gnome-common): Update to 3.18.0.
 2015-12-13 12:21:15 +02:00
Efraim Flashner 506959552f gnu: yelp-tools: Update to 3.18.0. 
* gnu/packages/gnome.scm (yelp-tools): Update to 3.18.0.
 2015-12-13 12:16:38 +02:00
Efraim Flashner ccdb0181c1 gnu: yelp-xsl: Update to 3.18.1. 
* gnu/packages/gnome.scm (yelp-xsl): Update to 3.18.1.
 2015-12-13 12:12:46 +02:00
Efraim Flashner 9bffc630cf gnu: file-roller: Update to 3.16.4. 
* gnu/packages/gnome.scm (file-roller): Update to 3.16.4.
 2015-12-13 12:03:03 +02:00
Efraim Flashner d45d35288e gnu: gnome-settings-daemon: Update to 3.18.2. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.18.2.
 2015-12-13 10:58:35 +02:00
Efraim Flashner 6d320ca693 gnu: geocode-glib: Update to 3.18.0. 
* gnu/packages/gnome.scm (geocode-glib): Update to 3.18.0.
 2015-12-13 10:38:34 +02:00
Efraim Flashner f05c809f8f gnu: dconf: Update to 0.24.0. 
* gnu/packages/gnome.scm (dconf): Update to 0.24.0.
 2015-12-13 10:24:16 +02:00
Efraim Flashner c0925c7a29 gnu: totem: Update to 3.18.1. 
* gnu/packages/gnome.scm (totem): Update to 3.18.1.
 2015-12-13 10:10:10 +02:00
Efraim Flashner 47b7d7bf98 gnu: grilo-plugins: Update to 0.2.16. 
* gnu/packages/gnome.scm (grilo-plugins): Update to 0.2.16.
 2015-12-13 08:06:42 +02:00
Efraim Flashner c725dc4da1 gnu: grilo: Update to 0.2.14. 
* gnu/packages/gnome.scm (grilo): Update to 0.2.14.
 2015-12-13 07:38:31 +02:00
Efraim Flashner c79595178c gnu: clutter-gst: Update to 3.0.14. 
* gnu/packages/gnome.scm (clutter-gst): Update to 3.0.14.
 2015-12-13 07:21:03 +02:00
Efraim Flashner b6b53a874d gnu: libchamplain: Update to 0.12.12. 
* gnu/packages/gnome.scm (libchamplain): Update to 0.12.12.
 2015-12-13 06:58:50 +02:00
Efraim Flashner f0b0a5de87 gnu: clutter-gtk: Update to 1.6.6. 
* gnu/packages/gnome.scm (clutter-gtk): Update to 1.6.6.
 2015-12-12 23:22:03 +02:00
Efraim Flashner 5021f9d340 gnu: owncloud-client: Update to 2.1.0. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.1.0.
 2015-12-12 22:52:48 +02:00
Andreas Enge 4165fda29d gnu: gmp: Disable parallel tests. 
* gnu/packages/multiprecision.scm (gmp)[arguments]: Disable parallel tests.
 2015-12-12 14:40:37 +01:00
Ludovic Courtès e82e55e58c Merge branch 'master' into core-updates 2015-12-12 11:48:46 +01:00
Andreas Enge e35dff9733 gnu: numactl: Update to 2.0.11. 
* gnu/packages/linux.scm (numactl)[source]: Update to 2.0.11.
  [native-inputs]: Drop autotools.
  [arguments]: Drop phase calling autogen.sh.
 2015-12-12 10:20:30 +01:00
Mark H Weaver 798697f673 gnu: wget: Update to 1.17.1. 
* gnu/packages/wget.scm (wget): Update to 1.17.1.
 2015-12-11 18:31:50 -05:00
Ludovic Courtès 98bd851ee8 gnu: gcc: Use the system zlib. 
* gnu/packages/gcc.scm (gcc-4.7) <configure-flags>: Pass
'--with-system-zlib'.
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: Remove
'--with-system-zlib' from the configure flags.
* gnu/packages/commencement.scm (zlib-final): New variable.
(gcc-final)[arguments]: Add ZLIB-FINAL to #:allowed-references.
Pass -L and -Wl,-rpath for zlib in LDFLAGS, as a configure flag.
[inputs]: Add LD-WRAPPER-BOOT3 and ZLIB-FINAL.
 2015-12-11 23:49:10 +01:00
Ludovic Courtès 52cfd8cb54 gnu: gcc-final: Remove unnecessary CPPFLAGS. 
* gnu/packages/commencement.scm (gcc-final)[arguments]: Remove
unnecessary CPPFLAGS from #:make-flags.
 2015-12-11 23:42:39 +01:00
Ricardo Wurmus f7f55db8f6 gnu: Move sparsehash to datastructures module. 
* gnu/packages/crypto.scm (sparsehash): Move variable to...
* gnu/packages/datastructures.scm: ...new file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-12-11 15:59:20 +01:00
Ricardo Wurmus ca3476cd6c gnu: Add r-lattice. 
* gnu/packages/statistics.scm (r-lattice): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 2a40f76389 gnu: Add r-gridbase. 
* gnu/packages/statistics.scm (r-gridbase): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 60a9d3d0ac gnu: Add r-plotrix. 
* gnu/packages/statistics.scm (r-plotrix): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 03af370f6e gnu: Add r-readr. 
* gnu/packages/statistics.scm (r-readr): New variable.
 2015-12-11 15:44:07 +01:00
Ricardo Wurmus 62141c07f7 gnu: Rename r-data.table to r-data-table. 
* gnu/packages/statistics.scm (r-data.table): Rename variable ...
(r-data-table): ... to this.
[description]: Clarify relation to data.frame.
[license]: Use correct license.
 2015-12-11 15:44:07 +01:00
Ben Woodcroft 5f7e17bef7 gnu: Add snap-aligner. 
* gnu/packages/bioinformatics.scm (snap-aligner): New variable.
 2015-12-11 14:34:51 +01:00
Efraim Flashner 9a41f4439d gnu: python-certifi: Update to 2015.11.20.1. 
* gnu/packages/python.scm (python-certifi): Update to 2015.11.20.1.
[source]: Change to pypi syntax.
 2015-12-11 15:12:39 +02:00
Efraim Flashner 2e4c54573f gnu: gnumeric: Add python scripting support. 
* gnu/packages/gnome.scm (gnumeric): Do it.
[inputs]: Add python2, python2-pygobject-2.
 2015-12-11 14:18:10 +02:00
Efraim Flashner 7bcbd40dc8 gnu: gnumeric: Update to 1.12.24. 
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.24.
[inputs]: Add librsvg, libxslt.
[arguments]: Use "modify-phases" syntax.
 2015-12-11 14:18:10 +02:00
Efraim Flashner 8cabd349b4 gnu: goffice: Update to 0.10.24. 
* gnu/packages/gnome.scm (goffice): Update to 0.10.24.
 2015-12-11 14:18:10 +02:00
Efraim Flashner 24a78aa600 gnu: gvfs: Update to 1.26.2. 
* gnu/packages/gnome.scm (gvfs): Update to 1.26.2.
[inputs]: Add gcr.
 2015-12-11 14:18:10 +02:00
Mark H Weaver 7534370435 gnu: linux-libre: Update to 4.3.2. 
* gnu/packages/linux.scm (linux-libre): Update to 4.3.2.
  [native-inputs]: Add openssl.
* gnu/packages/linux-libre-x86_64.conf,
  gnu/packages/linux-libre-i686.conf: Update for 4.3.x,
  based on <https://jxself.org/git/kernel-configs.git>.
 2015-12-11 00:30:38 -05:00
Efraim Flashner 5d69165797 gnu: python-requests: Update to 2.8.1. 
* gnu/packages/python.scm (python-requests): Update to 2.8.1.
[native-inputs]: Move python-setuptools here.
[inputs]: Remove python-certifi.
[propagated-inputs]: Add python-py, python-pytest, python-pytest-cov,
python-wheel.
[arguments]: Enable tests.
 2015-12-10 20:24:11 +02:00
Efraim Flashner addc808ddc gnu: Add python-wheel. 
* gnu/packages/python.scm (python-wheel, python2-wheel): New variables.
 2015-12-10 20:24:11 +02:00
Efraim Flashner 358c3d612b gnu: Add python-pytest-cov. 
* gnu/packages/python.scm (python-pytest-cov, python2-pytest-cov): New
variables.
 2015-12-10 20:24:11 +02:00
Roel Janssen e522d84035 gnu: Add libconfig. 
* gnu/packages/textutils.scm (libconfig): New variable.
 2015-12-10 16:27:50 +01:00
Efraim Flashner b01bbbcf3d gnu: python-pytz: Update to 2015.7. 
* gnu/packages/python.scm (python-pytz): Update to 2015.7.
[source]: Change uri to pypi's location.
[home-page]: Change to new website.
[license]: Change to expat.
 2015-12-10 16:09:16 +02:00
Ricardo Wurmus 16414017f3 gnu: ghc-cryptonite: Update description. 
* gnu/packages/haskell.scm (ghc-cryptonite)[description]: Shorten overly
  technical package description.
 2015-12-10 14:40:18 +01:00
Ben Woodcroft e815c094f7 gnu: python-biopython, python2-biopython: Update to 1.66. 
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66.
[source]: Use PyPi instead of biopython.org.
 2015-12-10 14:35:56 +01:00
Ricardo Wurmus 85538709f1 gnu: Add ghc-pandoc. 
* gnu/packages/haskell.scm (ghc-pandoc): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus ac2607a0ce gnu: Add ghc-http-client-tls. 
* gnu/packages/haskell.scm (ghc-http-client-tls): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 86dd2ce0b2 gnu: Add ghc-connection. 
* gnu/packages/haskell.scm (ghc-connection): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus dcc5cf1d41 gnu: Add ghc-socks. 
* gnu/packages/haskell.scm (ghc-socks): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 4f7f06e1a2 gnu: Add ghc-tls. 
* gnu/packages/haskell.scm (ghc-tls): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus f664cbb3bf gnu: Add ghc-x509-system. 
* gnu/packages/haskell.scm (ghc-x509-system): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 1c649948c9 gnu: Add ghc-x509-validation. 
* gnu/packages/haskell.scm (ghc-x509-validation): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 282f11420b gnu: Add ghc-x509-store. 
* gnu/packages/haskell.scm (ghc-x509-store): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus e24e053eda gnu: Add ghc-x509. 
* gnu/packages/haskell.scm (ghc-x509): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 4dc2deb920 gnu: Add ghc-memory. 
* gnu/packages/haskell.scm (ghc-memory): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 2763952b9c gnu: Add ghc-cryptonite. 
* gnu/packages/haskell.scm (ghc-cryptonite): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 76e2fa7529 gnu: Add ghc-tasty-kat. 
* gnu/packages/haskell.scm (ghc-tasty-kat): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 9d3c5d3859 gnu: Add ghc-asn1-parse. 
* gnu/packages/haskell.scm (ghc-asn1-parse): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 8078327341 gnu: Add ghc-asn1-encoding. 
* gnu/packages/haskell.scm (ghc-asn1-encoding): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus d4ce416a5c gnu: Add ghc-asn1-types. 
* gnu/packages/haskell.scm (ghc-asn1-types): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus ed8924c0d7 gnu: Add ghc-pem. 
* gnu/packages/haskell.scm (ghc-pem): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 45813e67e0 gnu: Add ghc-hourglass. 
* gnu/packages/haskell.scm (ghc-hourglass): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 51c05fcf20 gnu: Add ghc-byteable. 
* gnu/packages/haskell.scm (ghc-byteable): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus c3cb9fa67c gnu: Add ghc-http-client. 
* gnu/packages/haskell.scm (ghc-http-client): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus b12d4f23e0 gnu: Add ghc-mime-types. 
* gnu/packages/haskell.scm (ghc-mime-types): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus ac5d633a96 gnu: Add ghc-hslua. 
* gnu/packages/haskell.scm (ghc-hslua): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 27f3949086 gnu: Add ghc-sha. 
* gnu/packages/haskell.scm (ghc-sha): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 12676ce8be gnu: Add ghc-juicypixels. 
* gnu/packages/haskell.scm (ghc-juicypixels): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 348519e1bf gnu: Add ghc-mmap. 
* gnu/packages/haskell.scm (ghc-mmap): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus fcacbec34e gnu: Add ghc-filemanip. 
* gnu/packages/haskell.scm (ghc-filemanip): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 132133c1ae gnu: Add ghc-yaml. 
* gnu/packages/haskell.scm (ghc-yaml): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 9efdbb72af gnu: Add ghc-mockery. 
* gnu/packages/haskell.scm (ghc-mockery): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 1c17529fd5 gnu: Add ghc-logging-facade. 
* gnu/packages/haskell.scm (ghc-logging-facade): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus b55630a3a8 gnu: Add ghc-conduit. 
* gnu/packages/haskell.scm (ghc-conduit): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 1300634bf1 gnu: Add ghc-hspec-contrib. 
* gnu/packages/haskell.scm (ghc-hspec-contrib): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus cb31771f84 gnu: Add ghc-aeson-qq. 
* gnu/packages/haskell.scm (ghc-aeson-qq): New variable.
 2015-12-10 14:34:51 +01:00
Ricardo Wurmus 3611fc7bff gnu: Add ghc-haskell-src-meta. 
* gnu/packages/haskell.scm (ghc-haskell-src-meta): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 2e67725150 gnu: Add ghc-th-orphans. 
* gnu/packages/haskell.scm (ghc-th-orphans): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 536b84a832 gnu: Add ghc-th-reify-many. 
* gnu/packages/haskell.scm (ghc-th-reify-many): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 25101be9dc gnu: Add ghc-th-expand-syns. 
* gnu/packages/haskell.scm (ghc-th-expand-syns): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 1777e1f2cb gnu: Add ghc-th-lift. 
* gnu/packages/haskell.scm (ghc-th-lift): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 74d9f72e02 gnu: Add ghc-packedstring. 
* gnu/packages/haskell.scm (ghc-packedstring): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 5de6eedc60 gnu: Add ghc-enclosed-exceptions. 
* gnu/packages/haskell.scm (ghc-enclosed-exceptions): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 25b20a9c7a gnu: Add ghc-executable-path. 
* gnu/packages/haskell.scm (ghc-executable-path): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 31be270b93 gnu: Add ghc-cmark. 
* gnu/packages/haskell.scm (ghc-cmark): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 66c480b6c8 gnu: Add ghc-highlighting-kate. 
* gnu/packages/haskell.scm (ghc-highlighting-kate): New variable.
 2015-12-10 14:34:50 +01:00
Ricardo Wurmus 05245dc9ff gnu: Add ghc-diff. 
* gnu/packages/haskell.scm (ghc-diff): Add variable.
 2015-12-10 14:34:50 +01:00