Commit Graph

14223 Commits

Author SHA1 Message Date
Mark H Weaver aae468e980
gnu: gobject-introspection: Update to 1.50.0.
* gnu/packages/glib.scm (gobject-introspection): Update to 1.50.0.
2017-01-11 11:32:52 -05:00
Mark H Weaver ef51eb9907
gnu: libgsf: Update to 1.14.41.
* gnu/packages/gnome.scm (libgsf): Update to 1.14.41.
2017-01-11 11:32:50 -05:00
Mark H Weaver 919fc6aa03
gnu: dbus-glib: Update to 0.108.
* gnu/packages/glib.scm (dbus-glib): Update to 0.108.
2017-01-11 11:32:47 -05:00
Mark H Weaver 8344a85e9e
gnu: libxml++: Update to 3.0.1.
* gnu/packages/gnome.scm (libxml++): Update to 3.0.1.
2017-01-11 11:32:45 -05:00
Mark H Weaver 2913a8195d
gnu: glibmm: Update to 2.50.0.
* gnu/packages/glib.scm (glibmm): Update to 2.50.0.
2017-01-11 11:32:43 -05:00
Mark H Weaver 2b95aed464
gnu: glib: Update to 2.50.2.
* gnu/packages/glib.scm (glib): Update to 2.50.2.
[inputs]: Add util-linux.
2017-01-11 11:32:41 -05:00
Mark H Weaver d0d0f8d1de
gnu: mesa: Update to 13.0.3.
* gnu/packages/gl.scm (mesa): Update to 13.0.3.
2017-01-11 11:32:40 -05:00
Mark H Weaver b02733d495
gnu: libosinfo: Fix substitute fetching for usb.ids.
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Add 'file-name' field to
'origin' record of "usb.ids".  Otherwise, the default file name contains a "?"
which leads to failure to fetch nars from substitute servers.
2017-01-11 11:32:38 -05:00
David Craven c5edbb9790
gnu: ardour: Add eudev dependency.
* gnu/packages/audio.scm (ardour)[inputs]: Add eudev.
2017-01-11 11:23:44 -05:00
David Craven c96cb01a88
Revert "gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host."
These variants are no longer needed.

Followup to 86f4e9d76a.

This reverts commit 45591fd7fd.
2017-01-11 11:23:43 -05:00
Ludovic Courtès 9e485ffa1b
gnu: kcrash: Work around race condition when starting Xvfb.
Sometimes tests would start running before Xvfb is listening.
See <https://hydra.gnu.org/build/1750201>.

* gnu/packages/kde-frameworks.scm (kcrash)[arguments]: In
'start-xorg-server', add 'sleep' call after starting Xvfb.  Pass "Xvfb"
to 'system' instead of its absolute file name.
2017-01-11 11:23:41 -05:00
Leo Famulari dca73a742c
Revert "gnu: nss: Add comment about test failures in NSS 3.27.2"
This reverts commit 4f6ff977c2.
2017-01-11 11:23:39 -05:00
Efraim Flashner 5a52e86eb4
gnu: cairomm: Update to 1.12.2.
* gnu/packages/gtk.scm (cairomm): Update to 1.12.2.
[source]: Download from cairographics.org.
[home-page]: Use https.
2017-01-11 11:23:37 -05:00
Efraim Flashner b3822954ea
gnu: cairo: Update to 1.14.8.
* gnu/packages/gtk.scm (cairo): Update to 1.14.8.
[source]: Use https.
[home-page]: Use https.
2017-01-11 11:23:36 -05:00
Efraim Flashner 16f6ee9932
gnu: harfbuzz: Update to 1.3.4.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.3.4.
2017-01-11 11:23:34 -05:00
Efraim Flashner 51f0592fbf
gnu: poppler: Update to 0.50.0.
* gnu/packages/pdf.scm (poppler): Update to 0.50.0.
2017-01-11 11:23:32 -05:00
Efraim Flashner f8489f160b
gnu: cups-filters: Update to 1.13.1.
* gnu/packages/cups.scm (cups-filters): Update to 1.13.1.
[inputs]: Switch libjpeg-8 to libjpeg.
[arguments]: Disable driverless printing, set location for bash shell.
2017-01-11 11:23:30 -05:00
David Thompson b4c8c413ca
gnu: mesa: Enable floating point textures.
* gnu/packages/gl.scm (mesa): Add --enable-texture-float to configure flags.
2017-01-11 11:23:29 -05:00
Marius Bakke 5e107b22df
gnu: libxpm: Update to 3.5.12.
* gnu/packages/xorg.scm (libxpm): Update to 3.5.12.
2017-01-11 11:23:27 -05:00
Tobias Geerinckx-Rice 45e38a07eb
gnu: kmod: Update to 23.
* gnu/packages/linux.scm (kmod): Update to 23.
2017-01-11 11:23:25 -05:00
John Darrington 54d8d0fef1
gnu: Patch libxt's default search path.
* gnu/packages/patches/libxt-guix-search-paths.patch: New file.
* gnu/packages/xorg.scm (libxt) [source]: Add patch.
2017-01-11 11:23:23 -05:00
Leo Famulari 7b903a920c
gnu: eyed3: Update to 0.7.10.
* gnu/packages/mp3.scm (eyed3): Update to 0.7.10.
2017-01-11 00:48:48 -05:00
Leo Famulari 541b3f59ae
gnu: beets: Update to 1.4.3.
* gnu/packages/music.scm (beets): Update to 1.4.3.
2017-01-11 00:48:47 -05:00
Leo Famulari 653439c6b1
gnu: python-mutagen: Update to 1.36.
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.36.
2017-01-11 00:48:44 -05:00
Kei Kebreau 2fbc004f43
gnu: moc: Update to 2.5.2.
* gnu/packages/music.scm (moc): Update to 2.5.2.
[source](modules, snippet): Remove timestamps from the output.
2017-01-10 20:30:28 -05:00
Leo Famulari b0a567640c
gnu: cracklib: Fix buffer overflow.
* gnu/packages/patches/cracklib-fix-buffer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (cracklib)[source]: Use it.
2017-01-10 17:52:42 -05:00
Leo Famulari 4b96149d8b
gnu: libtiff: Fix CVE-2016-{10092,10093,10094} and others.
* gnu/packages/patches/libtiff-CVE-2016-10092.patch,
gnu/packages/patches/libtiff-CVE-2016-10093.patch,
gnu/packages/patches/libtiff-CVE-2016-10094.patch,
gnu/packages/patches/libtiff-assertion-failure.patch,
gnu/packages/patches/libtiff-divide-by-zero-ojpeg.patch,
gnu/packages/patches/libtiff-divide-by-zero-tiffcp.patch,
gnu/packages/patches/libtiff-divide-by-zero-tiffcrop.patch,
gnu/packages/patches/libtiff-divide-by-zero.patch,
gnu/packages/patches/libtiff-heap-overflow-pixarlog-luv.patch,
gnu/packages/patches/libtiff-heap-overflow-tif-dirread.patch,
gnu/packages/patches/libtiff-heap-overflow-tiffcp.patch,
gnu/packages/patches/libtiff-heap-overflow-tiffcrop.patch,
gnu/packages/patches/libtiff-invalid-read.patch,
gnu/packages/patches/libtiff-null-dereference.patch,
gnu/packages/patches/libtiff-tiffcp-underflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[replacement]: New field.
(libtiff/fixed): New variable.
2017-01-10 17:52:42 -05:00
Marius Bakke 8966c6b439
gnu: notmuch: Update to 0.23.5.
* gnu/packages/mail.scm (notmuch, python2-notmuch): Update to 0.23.5.
2017-01-10 23:42:38 +01:00
Marius Bakke 0d11a69f30
gnu: xapian: Update to 1.4.2.
* gnu/packages/search.scm (xapian): Update to 1.4.2.
2017-01-10 23:42:38 +01:00
Ludovic Courtès 3c0f7910e4
gnu: gnutls: Replace with 3.5.8 [fixes GNUTLS-SA-2017-{1,2}].
* gnu/packages/tls.scm (gnutls-3.5.8): New variable.
(gnutls)[replacement]: New field.
2017-01-10 23:40:33 +01:00
Marius Bakke 88f2dd1ddf
gnu: rofi: Update to 1.3.1.
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.1.
2017-01-10 22:35:05 +01:00
Ludovic Courtès 39dc70323c
gnu: youtube-dl: Update to 2017.01.10.
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.10.  Change
URLs to yt-dl.org.
2017-01-10 22:15:27 +01:00
Ludovic Courtès 082be6d2a1
gnu: e2fsprogs: Remove timestamp from 'libext2fs.info.gz'.
* gnu/packages/linux.scm (e2fsprogs)[source](snippet): Patch
'doc/Makefile.in' to use the '-n' option of gzip.
2017-01-10 22:15:26 +01:00
Ludovic Courtès 74d212911e
gnu: e2fsprogs: Use symlinks instead of hard links.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Pass
"--enable-symlink-install".
2017-01-10 22:15:26 +01:00
Leo Famulari 6d3e08d4e8
gnu: Add sysstat.
* gnu/packages/linux.scm (sysstat): New variable.
2017-01-10 13:38:35 -05:00
Tobias Geerinckx-Rice d4acb6db2f
gnu: python-click: Update to 6.7.
* gnu/packages/python.scm (python-click): Update to 6.7.
2017-01-10 17:36:57 +01:00
Mark H Weaver 3720371580
gnu: linux-libre@4.4: Update hash for fixed upstream tarball.
The initial upload of linux-libre-4.4.41-gnu.tar.xz was corrupted.

* gnu/packages/linux.scm (linux-libre-4.4)[source]: Update hash.
2017-01-10 11:04:13 -05:00
Ludovic Courtès 022c977258
gnu: libgit2, python-pygit2: Update to 0.25.1 [security fixes].
See <http://www.openwall.com/lists/oss-security/2017/01/10/5>.

* gnu/packages/version-control.scm (libgit2): Update to 0.25.1.
* gnu/packages/python.scm (python-pygit2): Update to 0.25.0.
2017-01-10 15:49:49 +01:00
David Craven f3e44f5cd0
gnu: Add btrfs-progs/static.
* gnu/packages/linux.scm (btrfs-progs/static): New variable.
2017-01-10 12:00:34 +01:00
David Craven 313880c73a
gnu: e2fsck/static: Only copy e2fsck.
* gnu/packages/linux.scm (e2fsck/static)[arguments]: Only copy e2fsck.
  [synopsis, description]: Adjust accordingly.
2017-01-10 11:58:11 +01:00
Ricardo Wurmus f03168327f
gnu: Add pcc.
* gnu/packages/c.scm (pcc): New variable.
2017-01-10 11:30:42 +01:00
Ben Woodcroft cba53c60d5
gnu: ruby-sqlite3: Update to 1.3.13.
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.13.
2017-01-10 18:40:58 +10:00
Mark H Weaver d33f889dac
gnu: linux-libre: Update to 4.9.2.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.2.
2017-01-09 22:42:32 -05:00
Mark H Weaver 75fd35b670
gnu: linux-libre@4.4: Update to 4.4.41.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.41.
2017-01-09 22:41:21 -05:00
Alex Kost 28fd01bceb
gnu: emacs-guix: Update to 0.2.2.
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.2.
2017-01-10 00:23:07 +03:00
Alex Kost f6b1dd233d
gnu: emacs-bui: Update to 1.1.0.
* gnu/packages/emacs.scm (emacs-bui): Update to 1.1.0.
2017-01-10 00:23:07 +03:00
ng0 5ed962263c
gnu: whois: Update to 5.2.14.
* gnu/packages/networking.scm (whois): Update to 5.2.14.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-09 16:04:55 -05:00
Leo Famulari 5ba5b4b240
gnu: imagemagick: Update to 6.9.7-3.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-3.
2017-01-09 14:18:51 -05:00
John Darrington 4f903085ac
Revert "gnu: Update imagemagick to version 7.0.4-3."
This reverts commit dea228cf12.
2017-01-09 20:06:26 +01:00
Mathieu Lirzin 04927b6f26
gnu: cuirass: Update to 0.0.1 revision 3.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 3.
[arguments]: Move 'bootstrap' phase before 'configure'.  Disable
"tests/repo.scm" test.
2017-01-09 18:57:15 +01:00
John Darrington cac19f0df9
gnu: Update aqbanking to version 5.6.12.
* gnu/packages/gnucash.scm (aqbanking): Update to version 5.6.12.
2017-01-09 18:55:27 +01:00
John Darrington dea228cf12
gnu: Update imagemagick to version 7.0.4-3.
* gnu/packages/imagemagick.scm: Update to version 7.0.4-3
2017-01-09 18:55:22 +01:00
José Miguel Sánchez García 84aafbbb66
gnu: Add nim.
* gnu/packages/nim.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add nim.scm.
2017-01-09 18:01:52 +01:00
David Craven 5d18d776d2
gnu: rustc: Retain binutils.
* gnu/packages/rust.scm (rustc)[arguments]: Retain binutils. Add
  wrap-rustc phase.

Problem reported by Ben Woodcroft <donttrustben@gmail.com>.
2017-01-09 18:01:52 +01:00
John Darrington 834458f6ff
gnu: Simplify the downloads from http://www.aquamaniac.de
* gnu/packages/gnucash.scm (aqbanking, gwenhyfar): Remove dummy parameter
from source url.
2017-01-09 17:50:49 +01:00
Christopher Allan Webber ab4a1731d8
gnu: guile-8sync: Add #t at end of setenv phase.
* gnu/packages/guile.scm: Add #t at end of setenv phase.
2017-01-09 09:51:10 -06:00
Christopher Allan Webber c5793e7eb7
gnu: Add guile-8sync.
* gnu/packages/guile.scm (guile-8sync): New variable.
2017-01-09 09:41:30 -06:00
Thomas Danckaert 7bbf2e39f7
gnu: hdf4: Update to 4.2.12.
* gnu/packages/maths.scm (hdf4): Update to 4.2.12.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 15:55:57 +01:00
Maxim Cournoyer 392c26b0d1
gnu: python-pip: Update to 9.0.1
* gnu/packages/python.scm (python-pip): Update to 9.0.1.
[native-inputs]: Remove.
[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 15:55:57 +01:00
Alex Sassmannshausen 814b18e587
gnu: Add Guile-ICS.
* gnu/packages/guile.scm (guile-ics): New variable.
2017-01-09 11:34:09 +01:00
Danny Milosavljevic ee719fba2d
gnu: Add corrode.
* gnu/packages/haskell.scm (corrode): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 10:44:52 +01:00
ng0 f048f12ba1
gnu: Add dotherside.
* gnu/packages/qt.scm (dotherside): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 10:33:07 +01:00
ng0 bb0756c7c7
gnu: Add font-google-roboto.
* gnu/packages/fonts.scm (font-google-roboto): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 10:33:07 +01:00
Mark H Weaver 96404be814
gnu: gdk-pixbuf: Update replacement to 2.36.3.
* gnu/packages/gtk.scm (gdk-pixbuf/fixed): Update to 2.36.3.
2017-01-08 23:42:03 -05:00
Mark H Weaver 86c41ec3e4
gnu: icecat: Add fixes from upstream mozilla-esr45.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes
from the upstream mozilla-esr45 repository.
2017-01-08 20:36:29 -05:00
Mark H Weaver 989862005a
gnu: icecat: Rename patches that have been assigned CVEs.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Rename patches that
have since been assigned CVEs.
2017-01-08 20:36:27 -05:00
Mark H Weaver b9acdad717
gnu: gdk-pixbuf: Replace with 2.36.2.
* gnu/packages/gtk.scm (gdk-pixbuf)[replacement]: New field.
(gdk-pixbuf/fixed): New variable.
(package/inherit): New macro.
(gdk-pixbuf+svg): Use 'package/inherit'.
2017-01-08 20:36:20 -05:00
Clément Lassieur 84bf2a2e74
gnu: prosody: Make config and data files visible to 'prosodyctl'.
* gnu/packages/messaging.scm (prosody)[arguments]: Add a 'fix-makefile' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-08 23:38:49 +01:00
Clément Lassieur 5b4946180e
gnu: prosody: Add OpenSSL and Coreutils to the PATH of programs.
* gnu/packages/messaging.scm (prosody)[arguments]: In 'wrap-programs'
phase, add 'openssl' and 'coreutils' to 'PATH'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-08 23:37:06 +01:00
Ludovic Courtès 9e3e972d1e
gnu: Add fprintd.
* gnu/packages/freedesktop.scm (fprintd): New variable.
2017-01-08 23:26:47 +01:00
Ludovic Courtès dfb01baec4
gnu: Add libfprint.
* gnu/packages/freedesktop.scm (libfprint): New variable.
2017-01-08 23:26:47 +01:00
David Craven ec460a2a37
gnu: font-liberation: Use @item in @enumerate.
* gnu/packages/fonts.scm (font-liberation)[description]: Use @item.

Followup to 0102fba27c.
2017-01-08 23:00:55 +01:00
Mark H Weaver 3a3e309975
gnu: ruby-yard: Fix typo in source URI.
This is a followup to commit 6499893ef8.

* gnu/packages/ruby.scm (ruby-yard)[source][uri]: Fix typo.
2017-01-08 07:25:45 -05:00
Ben Woodcroft 6499893ef8
gnu: ruby-yard: Update to 0.9.6.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.6.
[source]: Use 'GitHub' source.
[arguments]: Run tests without 'Rakefile'.
[native-inputs]: Replace 'ruby-rspec-2' with ruby-rspec'.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-08 11:10:28 +10:00
Mark H Weaver 57fe28a082
gnu: linux-libre: Update to 4.9.1.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.1.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
2017-01-07 19:42:36 -05:00
Mark H Weaver 0860081413
gnu: linux-libre@4.4: Update to 4.4.40.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.40.
2017-01-07 19:42:23 -05:00
Leo Famulari 1c9cea74b4
gnu: python-pygpgme: Fix build failure.
* gnu/packages/patches/python-pygpgme-fix-pinentry-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[source]: Use it.
2017-01-07 19:00:58 -05:00
Clément Lassieur 261f56914c
gnu: econnman: Add missing input.
* gnu/packages/connman.scm (econnman)[inputs]: Add python2-dbus.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-07 23:02:48 +01:00
Alex Griffin 2b84170782
gnu: gnome-mpv: Update to 0.11.
* gnu/packages/video.scm (gnome-mpv): Update to 0.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-07 22:55:40 +01:00
Thomas Danckaert e10872cc83
gnu: gpgme: Patch CMake files.
* gnu/packages/gnupg.scm (gpgme)[arguments]: Substitute '@libsuffix@' by
  '.so'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-07 22:55:40 +01:00
Ludovic Courtès b2859a4fef
gnu: zlib: Fix alternate download URL.
* gnu/packages/compression.scm (zlib)[source](uri): Update SourceForge URL.
2017-01-07 22:55:40 +01:00
Leo Famulari 9385f0e9cb
Revert "gnu: nspr: Update to 4.13.1."
There were many reports that NSS failed to build with this change.

This reverts commit 707c65aad7.
2017-01-07 15:38:30 -05:00
Ludovic Courtès d7d5050c51
gnu: ao-cad: Point 'LD_LIBRARY_PATH' to Mesa.
* gnu/packages/engineering.scm (ao)[arguments]: In
'install-guile-bindings', wrap 'ao-guile' to set 'LD_LIBRARY_PATH'.
[inputs]: Add MESA.
2017-01-07 00:38:03 +01:00
Tobias Geerinckx-Rice a2bd16ff99
gnu: vim: Update to 8.0.0147.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0147.
2017-01-07 00:26:23 +01:00
Tobias Geerinckx-Rice 0102fba27c
gnu: font-liberation: Use @enumerate in description.
* gnu/packages/fonts.scm (font-liberation)[description]: Use @enumerate.
2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice b4774d87e4
gnu: fonts: Improve synopses & descriptions.
* gnu/packages/fonts.scm (font-google-noto, font-hack)[synopsis,
description]: Fix typos, grammar, and general style only.
(font-dejavu, font-terminus, font-wqy-zenhei)[description]: Likewise.
2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice 8837860c66
gnu: fonts: Use install-file where appropriate.
* gnu/packages/fonts.scm (font-ubuntu, font-dejavu, font-bitstream-vera,
font-gnu-freefont-ttf, font-liberation, font-wqy-zenhei, font-anonymous-pro,
font-google-noto, font-un, font-hack): Substitute the simpler INSTALL-FILE
for every COPY-FILE invoked with redundant arguments.
2017-01-07 00:26:12 +01:00
Tobias Geerinckx-Rice 9657aeb187
gnu: python-tblib: Properly @end enumerate.
* gnu/packages/python.scm (python-tblib)[description]: Don't use
‘@end itemize’ to end an ‘@enumerate’ block.
2017-01-07 00:23:53 +01:00
Leo Famulari 8ee40f6849
Revert "Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'.""
This reverts commit f537ad0bf3.
2017-01-06 17:16:03 -05:00
Leo Famulari e483139141
gnu: glibc/linux: Use /bin/sh instead of /bin/bash as the default shell.
* gnu/packages/base.scm (glibc/linux)[arguments]: Use /bin/sh for scripts that
lack a shebang.
2017-01-06 17:16:03 -05:00
Leo Famulari 11b6687609
gnu: glibc/linux: Don't replace 'sh' reference with 'bash'.
* gnu/packages/base.scm (glibc/linux)[arguments]: Use /bin/sh instead of
/bin/bash in 'pre-configure' phase.
2017-01-06 17:16:03 -05:00
Leo Famulari 60f3ad8c07
gnu: gnu-make: Don't replace 'sh' reference with 'bash'.
* gnu/packages/base.scm (gnu-make)[arguments]: Use /bin/sh instead of /bin/bash
in 'set-default-shell' phase.
2017-01-06 17:16:02 -05:00
Leo Famulari fa6428a19f
gnu: m4: Don't replace 'sh' reference with 'bash'.
* gnu/packages/m4.scm (m4)[arguments]: Use /bin/sh instead of /bin/bash in
'pre-check' phase.
2017-01-06 17:16:02 -05:00
Leo Famulari 74288230ea
Merge branch 'master' into core-updates 2017-01-06 17:14:41 -05:00
Leo Famulari aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459.
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
2017-01-06 13:50:18 -05:00
Leo Famulari 707c65aad7
gnu: nspr: Update to 4.13.1.
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
2017-01-06 13:09:05 -05:00
Ricardo Wurmus 3a3bf2f819
gnu: Add r-copywriter.
* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
2017-01-06 16:31:19 +01:00
Ricardo Wurmus d407bdb931
gnu: Add r-copyhelper.
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
2017-01-06 16:31:14 +01:00
Ricardo Wurmus 6193563a36
gnu: Add r-chipseq.
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
2017-01-06 16:31:02 +01:00
Christopher Baines fab2784dbb
gnu: gnome-tweak-tool: Add missing inputs.
* gnu/packages/gnome.scm (gnome-tweak-tool)[inputs]: Add gnome-desktop
and libsoup.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines adb41527ad
gnu: gnome-tweak-tool: Make propagated-inputs just inputs.
* gnu/packages/gnome.scm (gnome-tweak-tool)[propagated-inputs]: Merge
with...
[inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines 9af6bce1e1
gnu: gnome-tweak-tool: Wrap program to set 'GI_TYPELIB_PATH'.
* gnu/packages/gnome.scm (gnome-tweak-tool)[arguments]: Add
'wrap-program' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines 7ef335b0e8
gnu: gnome-tweak-tool: Use glib-or-gtk-build-system.
This allows gobject introspection namespaces to be found.

* gnu/packages/gnome.scm (gnome-tweak-tool)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
[arguments]: Use %GLIB-OR-GTK-BUILD-SYSTEM-MODULES in #:imported-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Ben J Woodcroft dbf9d37114
gnu: bioruby: Update to 1.5.1.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
2017-01-06 19:06:07 +10:00
Ben J Woodcroft 0c37e2a3d2
gnu: cd-hit: Update to 4.6.6.
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
2017-01-06 19:06:03 +10:00
Leo Famulari e50d5b8c9d
gnu: khal: Disable failing tests.
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
2017-01-06 03:19:40 -05:00
Leo Famulari e0c32fc817
gnu: vdirsyncer: Update to 0.14.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.1.
2017-01-06 03:19:40 -05:00
Leo Famulari 491b78a8e8
gnu: python-icalendar: Update to 3.11.1.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
2017-01-06 03:19:36 -05:00
Ludovic Courtès fbec5abeef
gnu: gv: Do not propagate Ghostscript.
* gnu/packages/gv.scm (gv)[propagated-inputs]: Remove.
[arguments]: New field.
[inputs]: Add GHOSTCRIPT/X.
2017-01-05 23:45:38 +01:00
Alex Kost ec14d2157d
gnu: emacs-smartparens: Update to 1.9.0.
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.9.0.
2017-01-06 00:31:03 +03:00
Alex Kost 922ab34446
gnu: magit: Update to 2.10.0.
* gnu/packages/emacs.scm (magit, emacs-magit-popup): Update to 2.10.0.
2017-01-06 00:29:23 +03:00
Alex Kost cfb9026aa5
gnu: emacs-with-editor: Update to 2.5.9.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.9.
2017-01-06 00:29:23 +03:00
Danny Milosavljevic 6c8a387af2
gnu: Add ghc-markdown-unlit.
* gnu/packages/haskell.scm (ghc-markdown-unlit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 18:47:40 +01:00
Tobias Geerinckx-Rice 12c15242f4
gnu: beep: Ignore substitute* return value.
* gnu/packages/terminals.scm (beep)[arguments]: End 'patch-makefile phase
with truth.
2017-01-05 17:40:54 +01:00
Leo Famulari 92e779592d
gnu: libtool: Correct replacement shebang.
* gnu/packages/autotools.scm (libtool)[arguments]: Correct replacement
shebang in 'restore-ltmain-shebang' phase.
2017-01-05 11:32:44 -05:00
David Thompson 543bd0eede
gnu: sdl2: Add fcitx input.
* gnu/packages/sdl.scm (sdl2)[inputs]: Add fcitx.
2017-01-05 11:27:10 -05:00
David Thompson e0101b54b7
gnu: sdl2: Fix double input events bug.
* gnu/packages/sdl.scm (sdl2)[inputs]: Add dbus, gblib, and ibus.
2017-01-05 11:22:32 -05:00
Leo Famulari f537ad0bf3
Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'."
This commit causes too many rebuilds. It will be re-committed to core-updates.

This reverts commit 5b2834ae79.
2017-01-05 11:22:07 -05:00
Leo Famulari 5b2834ae79
gnu: gawk: Don't replace 'sh' reference with 'bash'.
* gnu/packages/gawk.scm (gawk)[arguments]: Use /bin/sh instead of /bin/bash in
'set-shell-file-name' phase.
2017-01-05 11:06:06 -05:00
Leo Famulari 78c172a56e
gnu: libtool: Make sure all phases return a successful value.
* gnu/packages/autotools.scm (libtool)[arguments]: Return #t from 'pre-check'
and 'restore-ltmain-shebang' phases.
2017-01-05 10:46:34 -05:00
Marius Bakke d9d23101ce
gnu: irssi: Update to 1.0.0.
* gnu/packages/irc.scm (irssi): Update to 1.0.0.
[arguments]: Remove --with-ncurses configure flag.
[native-inputs]: Move 'perl' to ...
[inputs]: ... here.
[home-page]: Use HTTPS.
2017-01-05 16:44:34 +01:00
Leo Famulari c5862bda95
gnu: libtool: Don't replace 'sh' reference with 'bash'.
Bash behaves differently based on how it is invoked (see Invocation in bash(1)).

* gnu/packages/autotools.scm (libtool)[arguments]: Use /bin/sh instead
of /bin/bash in 'pre-check' phase. Fix typo in comment.
2017-01-05 10:43:17 -05:00
ng0 98341757c8
gnu: libtool: Restore ltmain.sh shebang.
This fixes <http://bugs.gnu.org/25304>

* gnu/packages/autotools.scm (libtool)[arguments]: Add new phase
'restore-ltmain-shebang'.
[native-inputs]: Add help2man.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-05 10:43:17 -05:00
ng0 dc70626d26
gnu: libtool: Use 'modify-phases'.
* gnu/packages/autotools.scm (libtool): Use 'modify-phases'.
[arguments]: Use 'modify-phases'.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-05 10:43:14 -05:00
Marius Bakke 1bd858cc14
gnu: Fix indentation of some python packages.
This is a followup to abe2ec73..807a5b32.

* gnu/packages/python.scm (python-snowballstemmer,
  python-sphinx-cloud-sptheme, python-sphinx-alabaster-theme): Fix indentation.
2017-01-05 16:28:01 +01:00
Danny Milosavljevic 807a5b32bf
gnu: Add python-sphinx-alabaster-theme.
* gnu/packages/python.scm (python-sphinx-alabaster-theme,
  python2-sphinx-alabaster-theme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:27 +01:00
Danny Milosavljevic 754bfd7019
gnu: Add python-sphinx-cloud-sptheme.
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
  python2-sphinx-cloud-sptheme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:27 +01:00
Danny Milosavljevic 89cd988b6c
gnu: Add python-snowballstemmer.
* gnu/packages/python.scm (python-snowballstemmer,
  python2-snowballstemmer): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:26 +01:00
Marius Bakke 7d7ea947f5
gnu: sed: Update to 4.3.
* gnu/packages/base.scm (sed): Update to 4.3.
[source]: Use xz tarball. Remove upstreamed patch.
[arguments]: Fix '/bin/sh' -> 'bash' substitution.
[home-page]: Use https.
[native-inputs]: Add perl.
* gnu/packages/patches/sed-hurd-path-max.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-05 15:21:23 +01:00
José Miguel Sánchez García abe2ec735f
gnu: Add beep.
* gnu/packages/terminals.scm (beep): New variable.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-01-05 13:09:19 +01:00
Tobias Geerinckx-Rice 88a46c9812
gnu: Remove unused module import from (gnu packages mtools).
This is a follow-up to commit 3b0f2ba46b.

* gnu/packages/mtools.scm: Remove import of (gnu packages python).
2017-01-05 13:09:19 +01:00
Ben Woodcroft 19e5fb6030
gnu: ruby-nokogiri: Update to 1.7.0.1.
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.7.0.1.
2017-01-05 21:00:51 +10:00
Ben Woodcroft 8e941f2068
gnu: ruby-hoe: Update to 3.16.0.
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.0.
2017-01-05 20:52:22 +10:00
Carlos Sánchez de La Lama 4a6f099e2c
gnu: bootstrap: Add the dynamic linker name for "powerpc-linux".
This commit completes cross-compilation support for powerpc-linux-gnu.

* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "powerpc-linux"
case.
2017-01-04 23:57:30 +01:00
Carlos Sánchez de La Lama 440a3143f0
gnu: linux-libre: Adjust for PowerPC.
* gnu/packages/linux.scm (system->defconfig): New procedure.
(linux-libre-headers)[arguments]: Use it in 'build' phase to determine
the target name.
* gnu/packages/cross-base.scm (cross-kernel-headers)[xlinux-headers]
(arguments): Likewise.
2017-01-04 23:57:05 +01:00
Carlos Sánchez de La Lama fc649d0aad
gnu: gcc: Adjust for PowerPC.
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Add powerpc specific
substitutions for dynamic linker and start files locations in
'pre-configure' phase.
* gnu/packages/make-bootstrap.scm (%gcc-static)[arguments]: Add
"gcc/config/rs6000/sysv4.h" to the list of files in 'remove-lgcc_s'
phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-04 23:55:36 +01:00
Leo Famulari 5f0fabec54
gnu: unrtf: Fix CVE-2016-10091.
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/unrtf.scm (unrtf)[source]: Use it.
2017-01-04 14:42:58 -05:00
Alex Griffin 7a203059d3
gnu: libreoffice: Update to 5.1.6.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.6.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-04 14:37:58 -05:00
David Craven 3dcaa1226d
gnu: ocamlmod: Enable tests.
Followup to 93eeadf022.

* gnu/packages/ocaml.scm (ocamlmod)[arguments]: Enable tests.

Problem reported by Julien Lepiller <julien@lepiller.eu>.
2017-01-04 19:10:01 +01:00
David Craven 337273e41f
gnu: ocaml-ounit: Enable tests.
Followup to 7a76b4afd0.

* gnu/packages/ocaml.scm (ocaml-ounit)[arguments]: Enable tests.

Problem reported by Julien Lepiller <julien@lepiller.eu>.
2017-01-04 19:10:00 +01:00
Efraim Flashner 9c64f76e8a
gnu: aria2: Update to 1.30.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.30.0.
2017-01-04 19:15:00 +02:00
Ricardo Wurmus 68f9067324
gnu: inkscape: Update to 0.92.0.
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/inkscape.scm (inkscape): Update to 0.92.0.
[build-system]: Use "cmake-build-system".
[native-inputs]: Add glib:bin.
[arguments]: Remove obsolete arguments; disable tests.
2017-01-04 18:06:44 +01:00
Julien Lepiller 6548e53fcb
gnu: Add ocaml-cmdliner.
* gnu/packages/ocaml.scm (ocaml-cmdliner): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller eb1ba73185
gnu: Add ocaml-mtime.
* gnu/packages/ocaml.scm (ocaml-mtime): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller 63147e5e1e
gnu: Add ocaml-rresult.
* gnu/packages/ocaml.scm (ocaml-rresult): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller a359c7277c
gnu: Add ocaml-topkg.
* gnu/packages/ocaml.scm (ocaml-topkg): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller 704b990c36
gnu: Add ocaml-result.
* gnu/packages/ocaml.scm (ocaml-result): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller 44c23cb8d8
gnu: Add ocaml-bitstring.
* gnu/packages/ocaml.scm (ocaml-bitstring): New variable.
* gnu/packages/patches/ocaml-bitstring-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:11 +01:00
Julien Lepiller a5b5bd1d18
gnu: Add ocaml-bisect.
* gnu/packages/ocaml.scm (ocaml-bisect): New variable.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Julien Lepiller 3d598ebd35
gnu: Add ocaml-stringext.
* gnu/packages/ocaml.scm (ocaml-stringext): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Julien Lepiller 0472836fce
gnu: Add ocaml-qtest.
* gnu/packages/ocaml.scm (ocaml-qtest): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Julien Lepiller ff891f10ed
gnu: Add ocaml-frontc.
* gnu/packages/ocaml.scm (ocaml-frontc): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 17:41:10 +01:00
Ludovic Courtès a614ce389f
gnu: Add Guile-Bash.
* gnu/packages/guile.scm (guile-bash): New variable.
2017-01-04 16:18:52 +01:00
Julien Lepiller ddf2b503b1
gnu: Add ocaml-zarith.
* gnu/packages/ocaml.scm (ocaml-zarith): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:05:28 +01:00
Julien Lepiller 93eeadf022
gnu: Add ocamlmod.
* gnu/packages/ocaml.scm (ocamlmod): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:05:25 +01:00
Julien Lepiller bc2c3bc627
gnu: Add camlzip.
* gnu/packages/ocaml.scm (camlzip): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:05:06 +01:00
Julien Lepiller 7a76b4afd0
gnu: Add ocaml-ounit.
* gnu/packages/ocaml.scm (ocaml-ounit): New variable.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:04:51 +01:00
Julien Lepiller ad3d730e3a
gnu: camlp4: Install camlp4 META file.
* gnu/packages/ocaml.scm (camlp4)[arguments]: Install in OCAMLPATH and
  META file.
  (ocaml-findlib)[arguments]: Delete camlp4 META file.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:04:32 +01:00
Julien Lepiller 56f73eadc0
gnu: ocaml: Use a helper function to download from ocaml-forge.
* gnu/packages/ocaml.scm (ocaml-forge-origin): New procedure.
  (lablgtk)[origin]: Use it.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:56 +01:00
Julien Lepiller e6876cb9dc
gnu: Add ocaml-build-system.
* guix/build/ocaml-build-system.scm: New file.
* guix/build-system/ocaml.scm: New file.
* Makefile.am (MODULES): Add them.
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Adjuste OCAMLPATH.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:39 +01:00
Julien Lepiller e0ddaa8be3
gnu: camlp4: Compile native version.
* gnu/packages/ocaml.scm (camlp4)[arguments]: Disable parallel-build.
  Change default target to "all" to compile native and byte version.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:16 +01:00
David Craven 2b1f7b83f7
gnu: ocaml: Fix indentation.
* gnu/packages/ocaml.scm (ocaml): Fix indentation.
2017-01-04 16:03:07 +01:00
Julien Lepiller 796a17ab01
gnu: ocaml: Add CAML_LD_LIBRARY_PATH search-path.
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Add
  CAML_LD_LIBRARY_PATH.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:03:00 +01:00
Julien Lepiller 8bd10c1082
gnu: ocaml: Add a .file directive to generated .s files.
* gnu/packages/ocaml.scm (ocaml)[origin]: Add patch.
* gnu/packages/patches/ocaml-Add-a-.file-directive.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

Signed-off-by: David Craven <david@craven.ch>
2017-01-04 16:02:38 +01:00
David Craven 1ff755d1d5
gnu: Reorder imports in (gnu packages ocaml).
* gnu/packages/ocaml.scm: Reorder imports alphabetically.
2017-01-04 14:07:56 +01:00
David Craven d8e0a08c26
gnu: Use 'license:' prefix in (gnu packages ocaml).
* gnu/packages/ocaml.scm (ocaml, opam, camlp4, camlp5, hevea, coq,
  proof-general, ocaml-menhir, lablgtk, unison, ocaml-findlib)[license]:
  Add prefix.
2017-01-04 14:07:56 +01:00
David Craven 3254e1aba9
gnu: Add idris-lens.
* gnu/packages/idris.scm (idris-lens): New variable.
2017-01-04 12:11:14 +01:00
David Craven 5a16d828b3
gnu: Add idris-bifunctors.
* gnu/packages/idris.scm (idris-bifunctors): New variable.
2017-01-04 12:11:14 +01:00
David Craven 4e17fff386
gnu: Add idris-wl-pprint.
* gnu/packages/idris.scm (idris-wl-pprint): New variable.
2017-01-04 12:11:14 +01:00
David Craven ea3b38f1e1
gnu: Add idris-lightyear.
* gnu/packages/idris.scm (idris-lightyear, idris-default-arguments):
  New variables.
2017-01-04 12:11:14 +01:00
David Craven ae482ce12d
gnu: idris: Move to (gnu packages idris).
* gnu/packages/haskell.scm: Move 'idris' to...
* gnu/packages/idris.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add idris.scm.
2017-01-04 11:51:36 +01:00
David Craven c7a7129c5a
gnu: idris: Update to 0.99.
* gnu/packages/haskell.scm (idris): Update to 0.99.
2017-01-04 11:44:07 +01:00
David Craven c0d5b6452b
gnu: Order module imports in (gnu packages haskell) alphabetically.
* gnu/packages/haskell.scm: Order module imports alphabetically.
2017-01-04 11:44:07 +01:00
Ricardo Wurmus de793e9a5a
gnu: ghc-language-c: Fix up.
* gnu/packages/haskell.scm (ghc-language-c): Fix up indentation and
description.
2017-01-04 11:41:43 +01:00
David Craven 3b7ccbe94c
build-system: cargo: Use correct cargo.
* gnu/packages/rust.scm (cargo-bootstrap): Make private.
* guix/build-system/cargo.scm (default-cargo): Use cargo.
2017-01-04 11:29:15 +01:00
David Craven b5a09649db
gnu: Add cargo.
* gnu/packages/rust.scm (cargo): New variable.
2017-01-04 11:29:14 +01:00
Danny Milosavljevic 2d2388e243
gnu: Add ghc-language-c.
* gnu/packages/haskell.scm (ghc-language-c): New variable.
2017-01-04 11:27:24 +01:00
Leo Famulari 324f4fc559
gnu: mcrypt: Fix patches for CVE-2012-{4409,4527}.
This fixes CVE-2012-{4409,4527}.

This is a followup to commit fd1461879c.

* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
2017-01-04 02:46:51 -05:00
Alex Griffin 37e8a2e219
gnu: calibre: Update to 2.76.0.
* gnu/packages/ebook.scm (calibre): Update to 2.76.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-04 00:00:34 -05:00
Alex Griffin f7e9f1cadc
gnu: feh: Update to 2.18.
* gnu/packages/image-viewers.scm (feh): Update to 2.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:22 -05:00
Alex Griffin eb5378f902
gnu: bs1770gain: Update to 0.4.12.
* gnu/packages/audio.scm (bs1770gain): Update to 0.4.12.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:22 -05:00
Alex Griffin 648733dc14
gnu: dwm: Update to 6.1.
* gnu/packages/suckless.scm (dwm): Update to 6.1.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:22 -05:00
Alex Griffin bc47382a5d
gnu: dmenu: Update to 4.6.
* gnu/packages/suckless.scm (dmenu): Update to 4.6.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:21 -05:00
Alex Griffin f3a53f3c8f
gnu: slock: Update to 1.4.
* gnu/packages/suckless.scm (slock): Update to 1.4.
[source] Remove CVE-2016-6866 patch (no longer needed).
* gnu/packages/patches/slock-CVE-2016-6866.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:21 -05:00
Alex Griffin 8efd807f95
gnu: trash-cli: Update to 0.17.1.1.
* gnu/packages/shellutils.scm (trash-cli): Update to 0.17.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 23:39:21 -05:00
Tobias Geerinckx-Rice 3b40213923
gnu: Add wimlib.
* gnu/packages/backup.scm (wimlib): New variable.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 835d371f4b
gnu: parallel: Update to 20161222.
* gnu/packages/parallel.scm (parallel): Update to 20161222.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 0b2a91d8b7
gnu: global: Update to 6.5.6.
* gnu/packages/code.scm (global): Update to 6.5.6.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 02dadd3827
gnu: nano: Update to 2.7.3.
* gnu/packages/nano.scm (nano): Update to 2.7.3.
2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 3b3b60d037
gnu: Use HTTPS for all sourceforge.net home pages.
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
2017-01-04 05:14:22 +01:00
Christopher Baines 0916dc526e
gnu: Add emacs-git-gutter
* gnu/packages/emacs.scm (emacs-git-gutter): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 22:46:55 -05:00
Kei Kebreau ea5cc29561
gnu: supertux: Update to 0.5.1.
* gnu/packages/games.scm (supertux): Update to 0.5.1.
2017-01-03 18:07:45 -05:00
Marius Bakke 0c1b29db3a
gnu: m4: Update to 1.4.18.
* gnu/packages/m4.scm (m4): Update to 1.4.18.
[source]: Use xz compressed tarball.
2017-01-03 19:57:22 +01:00
Leo Famulari f339f2773d
gnu: assword: Update to 0.10.
* gnu/packages/password-utils.scm (assword): Update to 0.10.
[arguments]: Use Python 3 instead of Python 2.
[inputs]: Use Python 3 variants of inputs. Replace python2-pygpgme with
python-gpg. Remove python2-pygtk. Add python-pygobject.
[native-inputs]: Replace help2man with txt2man.
[arguments]: Remove PYTHONPATH from 'Makefile' in the 'manpage' phase.
2017-01-03 12:35:45 -05:00
Leo Famulari 7637de2313
gnu: Add python-xdo.
* gnu/packages/python.scm (python-xdo): New variable.
(python2-xdo): Use package-with-python2.
2017-01-03 12:35:44 -05:00
Leo Famulari e871c332a0
gnu: python2-xdo: Update to 0.3.
* gnu/packages/python.scm (python2-xdo): Update to 0.3.
2017-01-03 12:35:44 -05:00
Leo Famulari e3dd1f0cb8
gnu: Add python-gpg.
* gnu/packages/gnupg.scm (python-gpg, python2-gpg): New variable.
2017-01-03 12:35:44 -05:00
Leo Famulari 9e0f16f23f
gnu: gpgme: Update to 1.8.0.
* gnu/packages/gnupg.scm (gpgme): Update to 1.8.0.
[arguments]: Don't set 'GPG=gpg2' in #:configure-flags. GnuPG-2.x is
installed as 'gpg' on Guix.
2017-01-03 12:35:44 -05:00
Ludovic Courtès 70c6341110
gnu: Add Zile-on-Guile.
* gnu/packages/zile.scm (zile-on-guile): New variable.
2017-01-03 18:16:01 +01:00
Marius Bakke e2c3037427
gnu: pcsc-lite: Update to 1.8.20 [fixes CVE-2016-10109].
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.20.
2017-01-03 17:15:04 +01:00
Manolis Ragkousis 367f701379
gnu: glibc-hurd: Disable werror.
* gnu/packages/base.scm (glibc/hurd)[arguments]: Add "--disable-werror".
2017-01-03 16:00:43 +02:00
Manolis Ragkousis 62596a158b
gnu: Use hurd-triplet? to check if GNU/Hurd.
* gnu/packages/make-bootstrap.scm (hurd-triplet?): Move it from here..
* gnu/packages/hurd.scm: ..to here. New exported procedure.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
  [arguments]: Replace string-match.
  [inputs]: Same.
* gnu/packages/cross-base.scm (cross-libc)[native-inputs]: Same.
2017-01-03 16:00:39 +02:00
Kei Kebreau 6a37872cd2
gnu: chicken: Fix CVE-2016-{6830,6831}.
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
2017-01-03 08:35:02 -05:00
Kei Kebreau b9b6db45e8
gnu: chicken: Update to 4.11.1.
* gnu/packages/scheme.scm (chicken): Update to 4.11.1.
2017-01-03 08:34:54 -05:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
2017-01-03 13:39:51 +01:00
Roel Janssen 596fcfac88
gnu: r-jsonlite: Update to 1.2.
* gnu/packages/web.scm (r-jsonlite): Update to 1.2.
2017-01-03 13:37:55 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1.
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
2017-01-03 13:34:53 +01:00
Roel Janssen 407a280103
gnu: r-genomicranges: Update to 1.26.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.
2017-01-03 13:28:35 +01:00
Roel Janssen ac370a3397
gnu: r-genomeinfodb: Update to 1.10.2.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.
2017-01-03 12:47:36 +01:00
Efraim Flashner 4fb14fad94
gnu: sudo: Update to 1.8.19p1.
* gnu/packages/admin.scm (sudo): Update to 1.8.19p1.
2017-01-03 10:12:27 +02:00
Brandon Ludwig b1251a2f96
gnu: arc-theme: Update to 20161119.
* gnu/packages/gnome.scm (arc-theme): Update to 20161119.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 00:29:42 -05:00
Maxim Cournoyer 6155186838
gnu: gimp: Enable PDF support
* gnu/packages/gimp.scm (gimp)[inputs]: Add poppler.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-03 00:18:51 -05:00
Leo Famulari 47932c0d44
gnu: lynx: Update to 2.8.9dev.11 [fixes CVE-2016-9179].
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.11.
2017-01-02 23:52:12 -05:00
Leo Famulari b3e2ea8d48
gnu: Add sonic.
* gnu/packages/speech.scm (sonic): New variable.
2017-01-02 18:03:10 -05:00
Mathieu OTHACEHE 5819431c59
gnu: Add cmst.
* gnu/packages/connman.scm (cmst): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-02 22:55:33 +01:00
Mathieu OTHACEHE 125e3cdece
gnu: connman: Add dependency on polkit.
* gnu/packages/connman.scm (connman)[arguments]: Add "--enable-polkit".
[inputs]: Add POLKIT.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-02 22:55:33 +01:00
Efraim Flashner 832d60dc01
gnu: mpv: Update to 0.23.0.
* gnu/packages/video.scm (mpv): Update to 0.23.0.
2017-01-02 21:48:49 +02:00
Efraim Flashner 8d2de491e5
gnu: openvpn: Update to 2.3.14.
* gnu/packages/vpn.scm (openvpn): Update to 2.3.14.
2017-01-02 21:48:48 +02:00
Efraim Flashner 68b3627cd6
gnu: ffmpeg@2.8: Update to 2.8.10.
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.10.
2017-01-02 21:48:48 +02:00
Efraim Flashner 4b50daab00
gnu: jasper: Update to 2.0.10.
* gnu/packages/image.scm (jasper): Update to 2.0.10.
2017-01-02 21:48:38 +02:00
Ludovic Courtès 1a49a10a94
gnu: fftw: Factorize creation of the --enable-threads variant.
* gnu/packages/algebra.scm (pthread-variant): New procedure.
(fftw-with-threads, fftwf-with-threads): Use it.
2017-01-02 14:54:24 +01:00
Ludovic Courtès 7355634db3
gnu: Disambiguate packages with the same name.
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): Add
'name' field.
* gnu/packages/llvm.scm (llvm-for-extempore): Likewise.
2017-01-02 14:54:24 +01:00
Ludovic Courtès 9af076245f
gnu: gfortran: Remove non-'eq?' duplicate of gfortran@4.9.
* gnu/packages/gcc.scm (gfortran): Turn into an alias for GFORTRAN-4.9.
2017-01-02 14:54:24 +01:00
Tobias Geerinckx-Rice 1b5ea0922f
gnu: python-s3transfer: Update to 0.1.10.
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.10.
2017-01-02 08:37:26 +01:00
Tobias Geerinckx-Rice 1f89fb1691
gnu: python-greenlet: Update to 0.4.11.
* gnu/packages/python.scm (python-greenlet): Update to 0.4.11.
2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice 3753f2e6e9
gnu: python-mako: Update to 1.0.6.
* gnu/packages/python.scm (python-mako): Update to 1.0.6.
2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice af27e845e1
gnu: awscli: Update to 1.11.35.
* gnu/packages/python.scm (awscli): Update to 1.11.35.
2017-01-02 08:37:24 +01:00
Tobias Geerinckx-Rice bbb99d6b37
gnu: python-werkzeug: Update to 0.11.15.
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.15.
2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice 27f9148e1d
gnu: python-backports-abc: Update to 0.5.
* gnu/packages/python.scm (python-backports-abc): Update to 0.5.
2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice d79fa7da1b
gnu: python-decorator: Update to 4.0.10.
* gnu/packages/python.scm (python-decorator): Update to 4.0.10.
2017-01-02 08:37:22 +01:00
Tobias Geerinckx-Rice 819939cb94
gnu: python-pycparser: Use ‘modify-phases’ syntax.
* gnu/packages/python.scm (python-pycparser)[arguments]: Use
‘modify-phases’.
2017-01-02 08:37:21 +01:00
Tobias Geerinckx-Rice 5043b20dcd
gnu: python-pycparser: Update to 2.17.
* gnu/packages/python.scm (python-pycparser): Update to 2.17.
2017-01-02 08:28:28 +01:00
Leo Famulari 0d48ff811f
gnu: beets: Build with Python 3.
* gnu/packages/music.scm (beets)[arguments]: Build with python@3.
(native-inputs): Use Python-2 variants of all inputs.
(inputs): Use Python-2 variants of all inputs. Remove python-pyechonest.
2017-01-01 21:06:32 -05:00
Leo Famulari 27ccefc3d2
gnu: beets: Update to 1.4.2.
* gnu/packages/music.scm (beets): Update to 1.4.2.
2017-01-01 21:06:24 -05:00
Alex Vong 20be64dcf7
gnu: tar: Fix CVE-2016-6321.
* gnu/packages/patches/tar-CVE-2016-6321.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (tar)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:19:36 -05:00
Leo Famulari 2e161eafd8
gnu: python-pyicu: Update to 1.9.5.
* gnu/packages/python.scm (python-pyicu, python2-pyicu): Update to 1.9.5.
[source]: Use pypi-uri.
2017-01-01 20:15:06 -05:00
Theodoros Foradis 9a93f57473
gnu: yosys: Update to 0.7.
* gnu/packages/fpga.scm (yosys): Update to 0.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:06:43 -05:00
Theodoros Foradis f90f6b683e
gnu: yosys: Add xdot functionality.
* gnu/packages/fpga.scm (yosys)[inputs]: Add xdot, graphviz and psmisc.
[arguments]: Add 'fix-paths' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:06:43 -05:00
Theodoros Foradis abdd28e8c1
gnu: Add xdot.
* gnu/packages/graphviz.scm (xdot): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 20:06:43 -05:00
Leo Famulari 7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri.
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
2017-01-01 17:01:32 -05:00
Ricardo Wurmus 5dbeccf5b4
gnu: diffoscope: Embed tool references.
Fixes <http://bugs.gnu.org/25315>.

* gnu/packages/package-management.scm (diffoscope)[inputs]: Add
colordiff and vim.
[arguments]: Add "embed-tool-references" build phase to embed references
to "colordiff", "xxd", and "readelf".
2017-01-01 21:53:50 +01:00
Alex Vong ed88dd4512
gnu: mariadb: Update to 10.1.20.
* gnu/packages/databases.scm (mariadb): Update to 10.1.20.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 14:51:04 -05:00
Alex Vong e63b19f509
gnu: mysql: Update to 5.7.17.
* gnu/packages/databases.scm (mysql): Update to 5.7.17.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 14:45:23 -05:00
Ricardo Wurmus 395bbfdbea
gnu: Add propeller-development-suite.
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus 3ebc86d9bd
gnu: Add spinsim.
* gnu/packages/embedded.scm (spinsim): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus 0a7860c438
gnu: Add spin2cpp.
* gnu/packages/embedded.scm (spin2cpp): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus c6b96af794
gnu: Add propeller-load.
* gnu/packages/embedded.scm (propeller-load): New variable.
2017-01-01 13:56:28 +01:00
Ricardo Wurmus 150e0a1ec6
gnu: Add openspin.
* gnu/packages/embedded.scm (openspin): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus eb88fbafcd
gnu: Add propeller-toolchain.
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus 0d0079b2c5
gnu: Add proplib.
* gnu/packages/embedded.scm (proplib): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus 68cb27840e
gnu: Add propeller-gcc.
* gnu/packages/embedded.scm (propeller-gcc): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus 2d7c92134e
gnu: Add propeller-binutils.
* gnu/packages/embedded.scm (propeller-binutils): New variable.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus 6f5b1c9107
gnu: Add dummy linker for propeller-elf.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for
propeller-elf.
2017-01-01 13:56:27 +01:00
Ricardo Wurmus c26ba570cc
gnu: clisp: Remove timestamps.
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps"
phase to remove "__DATE__" and "__TIME__".
2017-01-01 13:55:50 +01:00
Ricardo Wurmus 636c77d066
gnu: clisp: Use modify-phases syntax.
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
2017-01-01 13:55:50 +01:00
Alex Kost c50dc711a1
gnu: manaplus: Update to 1.6.12.24.
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
2017-01-01 11:47:08 +03:00
Ben Woodcroft 25d84d3122
gnu: python-dendropy: Update to 4.2.0.
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-01 16:47:47 +10:00
Ben Woodcroft 322a583fcf
gnu: diamond: Update to 0.8.31.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
2017-01-01 16:47:47 +10:00
Ludovic Courtès 7fc2d377d1
gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4.
[native-inputs]: New field.
2016-12-31 20:02:59 +01:00
Tobias Geerinckx-Rice b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5.
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 0c315fb394
gnu: python-freezegun: Update to 0.3.8.
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 234ade2d7b
gnu: python-ply: Update to 3.9.
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice ab0c342924
gnu: python-pyquery: Update to 1.2.17.
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice 42734b9a88
gnu: python-click-log: Update to 0.1.8.
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2.
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice f165648e1b
gnu: python-ipykernel: Update to 4.5.2.
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 45cc957c72
gnu: python-jupyter-core: Update to 4.2.1.
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 594358f5b6
gnu: python2-fastlmm: Update to 0.2.26.
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
2016-12-31 16:51:40 +01:00
Tobias Geerinckx-Rice a5f92ca04f
gnu: python-pytz: Update to 2016.10.
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
2016-12-31 16:36:20 +01:00
Tobias Geerinckx-Rice bf5e4bc42a
gnu: python-pyyaml: Update to 3.12.
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
2016-12-31 15:27:24 +01:00
Tobias Geerinckx-Rice 7d2e758df5
gnu: python-pygments: Update to 2.1.3.
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
2016-12-31 15:27:23 +01:00
Kei Kebreau c055a37c8c
gnu: tiled: Update to 0.18.0.
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
2016-12-30 21:45:51 -05:00
ng0 da62a4a19e
gnu: mc: Partially fix absolute file paths.
Partially fixes <http://bugs.gnu.org/25273>.

* gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism.
This substitutes absolute file paths with functional file paths.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31 01:44:04 +01:00
Troy Sankey 0f391063d9
gnu: pius: Update to 2.2.2-0.891687c.
* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c.
[inputs]: Change GNUPG-2.0 to GNUPG (2.1).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31 01:44:04 +01:00
José Miguel Sánchez García 68415aa4e1
gnu: libtermkey: Update to 0.19.
* gnu/packages/terminals.scm (libtermkey): Update to 0.19.

Co-authored-by: Leo Famulari <leo@famulari.name>
2016-12-30 16:15:25 -05:00
Leo Famulari 858b9afeaf
gnu: libpng: Mention CVE-2016-10087.
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ...
* gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust.
* gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
2016-12-30 14:33:21 -05:00
Mark H Weaver 4037e5f52b
gnu: linux-libre@4.1: Update to 4.1.37.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
2016-12-30 04:26:11 -05:00
Ben Woodcroft a29929b32c
gnu: multiqc: Update to 0.9.
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.

* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-12-30 17:22:43 +10:00
Andreas Enge 89ccb1d881
gnu: gmp: Update to 6.1.2.
* gnu/packages/multiprecision.scm (gmp): Update to 6.1.2.
2016-12-30 00:38:24 +01:00
Chris Marusich 95d7d0c57f
gnu: elogind: Enable ACL support.
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 23:42:23 +01:00
Leo Famulari 87b5209558
gnu: mpd: Install systemd service files.
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
2016-12-29 17:28:34 -05:00
Ricardo Wurmus 76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
2016-12-29 22:24:12 +01:00
Ricardo Wurmus 2f642e5229
gnu: r-biostrings: Update to 2.42.1.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus 72c2693b9e
gnu: r-limma: Update to 3.30.7.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5796af9981
gnu: r-variantannotation: Update to 1.20.2.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5d3acc0b36
gnu: r-edger: Update to 3.16.5.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus 81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus 54d9b568fc
gnu: r-iranges: Update to 2.8.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus 86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
2016-12-29 22:24:11 +01:00
Ricardo Wurmus c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
2016-12-29 22:24:10 +01:00
Ricardo Wurmus 007ee80277
gnu: r-deseq2: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
2016-12-29 22:24:10 +01:00
Ricardo Wurmus d0f0579e6f
gnu: r-annotate: Update to 1.52.1.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
2016-12-29 22:24:10 +01:00
Leo Famulari a57495e27a
gnu: khard: Update to 0.11.3.
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
2016-12-29 16:12:13 -05:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1.
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr.
* gnu/packages/statistics.scm (r-plogr): New variable.
2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64.
* gnu/packages/statistics.scm (r-base64): New variable.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot.
* gnu/packages/statistics.scm (r-rprojroot): New variable.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus b1c1f4d012
gnu: armadillo: Update to 7.600.2.
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14.
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22.
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6.
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0.
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus 1a44753b95
gnu: r-r-utils: Update to 2.5.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus 62350c0797
gnu: r-coda: Update to 0.19-1.
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3607afbe4c
gnu: r-chron: Update to 2.3-48.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
2016-12-29 21:49:11 +01:00
Ricardo Wurmus eaec5506ad
gnu: r-knitr: Update to 1.15.1.
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus fd7810d323
gnu: r-bh: Update to 1.62.0-1.
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus dd4ae2950a
gnu: r-svglite: Update to 1.2.0.
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus 48a87bbe3b
gnu: r-gdtools: Update to 0.1.3.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0.
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus b94b03b7fa
gnu: r-scales: Update to 0.4.1.
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus 8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
2016-12-29 21:49:10 +01:00
Ricardo Wurmus 421f7772b4
gnu: r-qtl: Update to 1.40-8.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus 2a1c1b8074
gnu: r-hms: Update to 0.3.
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus 85455a08f4
gnu: r-git2r: Update to 0.17.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus abb6f0540e
gnu: r-ade4: Update to 1.7-5
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus db1b38af4e
gnu: r-xml: Update to 3.98-1.5.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0.
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2.
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8.
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14.
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
2016-12-29 21:49:08 +01:00
Ricardo Wurmus c616810720
gnu: r-htmlwidgets: Update to 0.8.
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
2016-12-29 21:49:08 +01:00
Ricardo Wurmus f4ca28d911
gnu: r-curl: Update to 2.3.
* gnu/packages/web.scm (r-curl): Update to 2.3.
2016-12-29 21:49:08 +01:00
Ricardo Wurmus d3122150ca
gnu: r-servr: Update to 0.5.
* gnu/packages/web.scm (r-servr): Update to 0.5.
2016-12-29 21:49:08 +01:00
Alex Kost deb6276dda
Remove Emacs interface.
* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 23:40:24 +03:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2.
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod.
* gnu/packages/statistics.scm (r-statmod): New variable.
2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm.
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools.
* gnu/packages/statistics.scm (r-sourcetools): New variable.
2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm.
* gnu/packages/statistics.scm (r-beeswarm): New variable.
2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor.
* gnu/packages/statistics.scm (r-vipor): New variable.
2016-12-29 19:54:58 +01:00
Leo Famulari fc604eda3d
gnu: libpng-1.2: Update to 1.2.57 [security update].
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
2016-12-29 13:41:43 -05:00
Leo Famulari 322e724bfa
gnu: libpng: Fix a null pointer dereference [fixes security issue].
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
2016-12-29 13:36:00 -05:00
Leo Famulari d835c6cc4b
gnu: mpd: Update to 0.19.21.
* gnu/packages/mpd.scm (mpd): Update to 0.19.21.
2016-12-29 11:30:31 -05:00
ng0 b954256337
gnu: rustc: Update to 1.14.0.
* gnu/packages/rust.scm (rustc): Update to 1.14.0.
  %rust-bootstrap-binaries: Update to 1.13.0.

Signed-off-by: David Craven <david@craven.ch>
2016-12-29 12:38:23 +01:00
Ricardo Wurmus e62e975b1f
gnu: mu: Avoid bootstrapping.
* gnu/packages/mail.scm (mu)[arguments]: Rename "patch-configure.ac" to
"patch-configure" and only patch "configure" script; remove "autoreconf"
phase.
[native-inputs]: Remove "autoconf", "automake", "libtool", and
"texinfo".
2016-12-29 09:20:08 +01:00
Ricardo Wurmus e7b9da2411
gnu: mu: Update to 0.9.18.
* gnu/packages/mail.scm (mu): Update to 0.9.18.
2016-12-29 08:58:57 +01:00
Tobias Geerinckx-Rice 43c0b9beaf
gnu: perl-zip: Update to 1.59.
* gnu/packages/zip.scm (perl-zip): Update to 1.59.
2016-12-29 05:37:01 +01:00
ng0 d5bbf806f3
gnu: Add python-trollius-redis.
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:53 -05:00
ng0 789de5e279
gnu: Add python-straight-plugin.
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:53 -05:00
ng0 a0e41de4ab
gnu: Add python-openid-teams.
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:53 -05:00
ng0 03702173f1
gnu: Add python-openid-cla.
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:52 -05:00
ng0 3ef00f5609
gnu: Add python2-openid.
* gnu/packages/python.scm (python2-openid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:52 -05:00
ng0 0151a8df22
gnu: Add python-pygit2.
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:52 -05:00
ng0 460fccd4b3
gnu: Add python-munch.
* gnu/packages/python.scm (python-munch, python2-munch): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:51 -05:00
ng0 9f21414de4
gnu: Add python-kitchen.
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:51 -05:00
ng0 a2c7d88e74
gnu: Add python-flask-multistatic.
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:51 -05:00
ng0 a7ad802be5
gnu: Add python-flask-wtf.
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28 22:41:45 -05:00
Tobias Geerinckx-Rice 50f7da2fc8
gnu: xonsh: Update to 0.5.1.
* gnu/packages/shells.scm (xonsh): Update to 0.5.1.
2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 6a34f4ccc8
gnu: python-prompt-toolkit: Update to 1.0.9.
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 791ac6a68d
gnu: python-markdown: Update to 2.6.7.
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice 2ee57340f4
gnu: python-numexpr: Update to 2.6.1.
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice ffb1e98d74
gnu: python-babel: Update to 2.3.4.
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
2016-12-29 02:38:20 +01:00
Leo Famulari 3221d1a392
gnu: icu4c: Update to 58.2.
* gnu/packages/icu4c.scm (icu4c): Update to 58.2.
2016-12-28 19:35:22 -05:00
Manolis Ragkousis 1d9c889881
gnu: glibc-hurd: Update to 2.23.
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 2.23.
2016-12-28 21:14:20 +02:00
Marius Bakke 517c3207d3
gnu: rofi: Update to 1.3.0.
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.0.
2016-12-28 18:00:02 +01:00
Tobias Geerinckx-Rice 48dc9f3af3
gnu: znc: Update to 1.6.4.
* gnu/packages/messaging.scm (znc): Update to 1.6.4.
2016-12-28 05:14:05 +01:00
Tobias Geerinckx-Rice c09dd486a2
gnu: util-linux: Update to 2.28.2.
* gnu/packages/linux.scm (util-linux): Update to 2.28.2.
2016-12-27 22:24:44 +01:00
Nicolas Goaziou 4dbaa12f5d
gnu: wireshark: Update to 2.2.3.
* gnu/packages/networking.scm (wireshark): Update to 2.2.3.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27 17:05:07 +01:00
Nicolas Goaziou d531b9fdfe
gnu: emacs-org: Update to 20161224.
* gnu/packages/emacs.scm (emacs-org): Update to 20161224.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27 17:03:45 +01:00
Stefan Reichoer 9e6c7c425e
gnu: Add httpstat.
* gnu/packages/networking.scm (httpstat): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27 16:56:34 +01:00
Thomas Danckaert ea8450c82a
gnu: Add python-netcdf4.
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27 16:30:59 +01:00
Ricardo Wurmus 2c8d6c0be4
gnu: r-rcas: Update to 1.1.1.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1.
[propagated-inputs]: Add plotrix.
2016-12-27 14:50:55 +01:00
Leo Famulari 1194575b3c
gnu: python-pycrypto: Add TODO "removal" comment.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add
comment.
2016-12-26 19:51:54 -05:00
Leo Famulari 4de2a710a6
gnu: python-stem: Don't use python-pycrypto.
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is
unmaintained [0] and contains an exploitable buffer overflow bug [1].

[0] https://github.com/dlitz/pycrypto/issues/173
[1] https://github.com/dlitz/pycrypto/issues/176

* gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove
python-pycrypto.
2016-12-26 19:51:49 -05:00
ng0 91426243f1
gnu: awesome: Update to 4.0.
* gnu/packages/wm.scm (awesome): Update to 4.0.
[source]: Adjust URL.
[inputs]: Add xcb-util-xrm and libxkbcommon.
* gnu/packages/patches/awesome-reproducible-png.patch: Adjust patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-26 19:13:27 -05:00
Ben Woodcroft 9916ef8bb6
gnu: diamond: Update to 0.8.30.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
2016-12-27 09:18:05 +10:00
Leo Famulari c976b319fe
gnu: python-stem: Update to 1.5.3.
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3.
[source]: Update URL.
2016-12-26 13:20:52 -05:00
Ben Woodcroft f1775db660
gnu: ruby-minitest: Update to 5.10.1.
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
2016-12-26 22:43:59 +10:00
Roel Janssen 328398e752
gnu: Add ripit.
* gnu/packages/cdrom.scm (ripit): New variable.
2016-12-26 12:58:29 +01:00
Roel Janssen fb222fb2b0
gnu: Add perl-cddb-get.
* gnu/packages/perl.scm (perl-cddb-get): New variable.
2016-12-26 12:45:48 +01:00
Alex Kost b2f1f7b0d9
gnu: emacs-guix: Update to 0.2.1.
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.1.
2016-12-26 13:53:53 +03:00
Efraim Flashner 9f74424f37
gnu: xf86-video-qxl: Update to 0.1.5.
* gnu/packages/xorg.scm (xf86-video-qxl): Update to 0.1.5.
2016-12-26 04:32:05 +02:00
Ricardo Wurmus 33ca551731
gnu: Add roffit.
* gnu/packages/groff.scm (roffit): New variable.
2016-12-25 22:02:39 +01:00
Efraim Flashner f077aa2b29
gnu: libevdev: Update to 1.5.5.
* gnu/packages/xorg.scm (libevdev): Update to 1.5.5.
[houme-page]: Use https.
2016-12-25 16:16:10 +02:00
Efraim Flashner db10a5e78a
gnu: libinput: Update to 1.5.3.
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.3.
2016-12-25 16:16:00 +02:00
Marius Bakke 4a95b3882d
gnu: exim: Update to 4.87.1 [fixes CVE-2016-9963].
* gnu/packages/mail.scm (exim): Update to 4.87.1.
2016-12-25 13:53:17 +01:00
Taylan Ulrich Bayırlı/Kammer d02fb7cec6
gnu: leptonica: Update to 1.74.0.
* gnu/packages/image.scm (leptonica): Update to 1.74.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-25 13:48:57 +01:00
Efraim Flashner c88bee0ace
gnu: font-gnu-unifont: Update to 9.0.06.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 9.0.06.
2016-12-25 05:04:20 +02:00
Leo Famulari 3a2bcac6bd
gnu: libxml2: Fix CVE-2016-5131.
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
2016-12-24 19:19:36 -05:00
Leo Famulari 0c83c6bf26
gnu: libxml2: Fix CVE-2016-4658.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-12-24 19:19:32 -05:00
Efraim Flashner daa481f59a
gnu: qt: Update to 5.7.1.
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtwebchannel, qtlocation,
qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects,
qtwebkit): Update to 5.7.1.
2016-12-25 01:49:36 +02:00
Efraim Flashner 457d154fdf
gnu: alsa-utils: Update to 1.1.3.
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.3.
2016-12-25 01:47:22 +02:00
Efraim Flashner 7604106f2c
gnu: busybox: Update to 1.26.0.
* gnu/packages/busybox.scm (busybox): Update to 1.26.0.
[arguments]: Enable previously broken grep test.
2016-12-25 01:47:22 +02:00
Thomas Danckaert db82557013
gnu: netcdf: Enable HDF4 support.
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
  [arguments]: Add "--enable-hdf4" configure flag.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-24 14:41:50 +01:00
Marius Bakke f7fb34a06c
gnu: notmuch: Update to 0.23.4.
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.23.4.
2016-12-24 14:26:39 +01:00
Tobias Geerinckx-Rice b672e1ed1e
gnu: moreutils: Update to 5.9.
* gnu/packages/moreutils.scm (moreutils): Update to 5.9.
[source]: Update the fall-back Debian snapshot URL.
[inputs]: Move docbook-xml, docbook-xsl, libxml2, and libxslt from here...
[native-inputs]: ...to this new variable.
[arguments]: Delete the configure phase altogether.  Set the DOCBOOKXSL path
in #:make-flags instead.
[home-page]: Use HTTPS.
2016-12-24 03:19:03 +01:00
Tobias Geerinckx-Rice 4d2fd1c016
gnu: yadifa: Explicitly enable DNSSEC & caching.
* gnu/packages/dns.scm (yadifa)[arguments]: Add configure flags to
consistently enable the ‘nsec’, ‘nsec3’, ‘tsig’, and ‘caching’ features.
2016-12-23 23:54:15 +01:00
Tobias Geerinckx-Rice 8769d482ef
gnu: yadifa: Update to 2.2.3.
* gnu/packages/dns.scm (yadifa): Update to 2.2.3.
[version, source]: Remove monotonic revision number from the version
string.  Use it only to reconstruct the download URL.
2016-12-23 23:54:15 +01:00
Kei Kebreau eed2a95e9f
gnu: minetest: Update to 0.4.15.
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.15.
2016-12-23 17:34:41 -05:00
Tobias Geerinckx-Rice 41d23dd1e2
gnu: btrfs-progs: Update to 4.9.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.9.
2016-12-23 20:29:18 +01:00
ng0 50e9f81a22
gnu: gnurl: Split man pages to doc output.
* gnu/packages/gnunet.scm (gnurl)[arguments]: Add 'move-man3-pages' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-23 11:58:03 -05:00
ng0 4ec08b637b
gnu: gnurl: Make tests more verbose.
* gnu/packages/gnunet.scm (gnurl)[arguments]: Replace the 'check' phase.
Move the 'disable-test1026' and 'patch-runtests' phases into 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-23 11:58:03 -05:00
ng0 a0e43c9fa7
gnu: gnurl: Update to 7.52.1 [fixes CVE-2016-{9586, 9952, 9953, 9594}].
* gnu/packages/gnunet.scm (gnurl): Update to 7.52.1.
[arguments]: Add 'autoconf' and 'disable-test1026' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-23 11:58:02 -05:00
Chris Marusich 426e6083ae
gnu: Add asunder.
* gnu/packages/cdrom.scm (asunder): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-23 11:34:42 -05:00
Marius Bakke d0f1673dc3
gnu: dnscrypt-proxy: Update to 1.8.1.
* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.8.1.
2016-12-23 15:53:51 +01:00
Marius Bakke 14251e30c4
gnu: curl: Update replacement to 7.52.1 [fixes CVE-2016-{9586,9594}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.1.
[home-page]: Use HTTPS.
(curl-7.51.0): Replace with ...
(curl-7.52.1): ... this.
2016-12-23 15:31:36 +01:00
Bake Timmons b881dc6d98
gnu: Add wwwoffle.
* gnu/packages/web.scm (wwwoffle): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-23 15:18:02 +01:00
Thomas Danckaert d205f895ca
gnu: Add python-hdf4.
* gnu/packages/python.scm (python-hdf4, python2-hdf4): New variables.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-12-23 14:51:56 +01:00
Leo Famulari 4b4ff6938d
gnu: qsyncthingtray: Update to 0.5.7.
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.7.
2016-12-23 02:01:28 -05:00
Kei Kebreau e813f3956e
gnu: xonsh: Fix description.
* gnu/packages/shells.scm (xonsh)[description]: Two spaces after a period.
2016-12-22 18:06:56 -05:00
Efraim Flashner a532a6711e
gnu: qtimageformats: Add jasper support.
* gnu/packages/qt.scm (qtimageformats)[inputs]: Add jasper.
2016-12-23 01:01:27 +02:00
Stefan Reichör 572ee05c31
gnu: xonsh: Update to 0.5.0.
* gnu/packages/shells.scm (xonsh): Update to 0.5.0.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-12-22 17:59:41 -05:00
Marius Bakke 059b3aa9c3
gnu: gnupg: Fix build on 32-bit architectures.
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
2016-12-22 15:05:50 +01:00
Ricardo Wurmus 8e401ab6db
gnu: python-scikit-learn: Update to 0.18.1.
* gnu/packages/python.scm (python-scikit-learn): Update to 0.18.1.
[arguments]: Remove special "check" phase.
[native-inputs]: Add python-cython.
2016-12-22 13:19:20 +01:00
Leo Famulari 8bf4a6aecd
gnu: shotwell: Update to 0.25.2.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.2.
2016-12-22 02:54:42 -05:00
Leo Famulari 5d97f4c74a
gnu: libssh2: Update to 1.8.0.
* gnu/packages/ssh.scm (libssh2): Update to 1.8.0.
2016-12-22 00:17:54 -05:00
Efraim Flashner 5d0ebcc4cf
gnu: gcc: Update to 6.3.0.
* gnu/packages/gcc.scm (gcc): Update to 6.3.0.
2016-12-22 02:53:24 +02:00
Efraim Flashner 0d1baed223
gnu: abcde: Add flac support.
* gnu/packages/cdrom.scm (abcde)[inputs]: Add flac.
[arguments]: Wrap the bunary with flac's bin dir also.
2016-12-22 02:53:19 +02:00
Ricardo Wurmus 590b80d29a
Merge branch 'version-0.12.0' 2016-12-21 23:33:18 +01:00
Efraim Flashner d229ba9502
gnu: qemu: Update to 2.8.0.
* gnu/packages/qemu.scm (qemu): Update to 2.8.0.
[source]: Remove patches.
[arguments]: Set host_cc during 'configure.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-21 21:28:15 +02:00
Julien Lepiller 4da696877c
gnu: coq: Build coqide
* gnu/packages/ocaml.scm (coq): Build coqide.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-21 17:54:18 +01:00
Julien Lepiller 8afd19585f
gnu: lablgtk: use ocamlfind in installation
* gnu/packages/ocaml.scm (lablgtk): Use ocamlfind in installation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-21 17:54:18 +01:00
Julien Lepiller 054fea97b7
gnu: lablgtk: Update to 2.18.5
* gnu/packages/ocaml.scm (lablgtk): Update to 2.18.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-21 17:54:18 +01:00
Leo Famulari c8c385a04a
Revert "gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}]."
The curl maintainers said this about 7.52.0:

"Attention! We will release a patch update within a few days to fix a
serious security problem found in curl 7.52.0. You may consider holding
off until then."

This message was displayed at <https://curl.haxx.se/download.html> on
2016-12-21.

This reverts commit 42366b35c3.
2016-12-21 11:52:36 -05:00
Tobias Geerinckx-Rice f05f5b307e
gnu: mlt: Update to 6.4.1.
* gnu/packages/video.scm (mlt): Update to 6.4.1.
2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice 9fa7284155
gnu: jsoncpp: Update to 1.8.0.
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.0.
2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice e177f819c0
gnu: xf86-video-vmware: Update to 13.2.1.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.2.1.
[native-inputs]: Add eudev.
2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice 7aef9930f0
gnu: xcb-util-xrm: Update to 1.2.
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.2.
2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice 82f44a36e4
gnu: xcape: Update to 1.2.
* gnu/packages/xdisorg.scm (xcape): Update to 1.2.
2016-12-21 16:37:00 +01:00
Marius Bakke 42366b35c3
gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.0.
(curl-7.51.0): Replace with ...
(curl-7.52.0): ... this.
2016-12-21 14:56:34 +01:00
Ludovic Courtès 7af6ecab6e
gnu: guix: Really skip "pivot-root" test.
This is a followup to fe9bdb581e (which
introduced 'test-equal' for the "pivot-root" test) and to
198eac2bca (which updated the regexps for
skipped tests.)

* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'disable-container-tests' phase, add "test-equal" to the regexp, so that
"pivot-root" is really skipped.
2016-12-21 14:28:28 +01:00
Ricardo Wurmus 7aa8785c41
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to b291b327.
2016-12-21 10:32:17 +01:00
Ludovic Courtès b291b3271a
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el.
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
2016-12-21 10:22:32 +01:00
Leo Famulari 6a148b9db5
gnu: imagemagick: Update to 6.9.7-0.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-0.
2016-12-20 20:50:50 -05:00
Marius Bakke 21eced80a0
gnu: nmap: Update to 7.40.
* gnu/packages/admin.scm (nmap): Update to 7.40.
2016-12-21 00:14:08 +01:00
Ludovic Courtès 64b5e41376
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el.
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
2016-12-20 23:39:30 +01:00
Efraim Flashner 899358d18a
gnu: msmtp: Update to 1.6.6.
* gnu/packages/mail.scm (msmtp): Update to 1.6.6.
2016-12-20 22:43:07 +02:00
Efraim Flashner 837ca0f071
gnu: getmail: Update to 4.52.0.
* gnu/packages/mail.scm (getmail): Update to 4.52.0.
2016-12-20 22:43:06 +02:00
Efraim Flashner c55fa42b2d
gnu: bogofilter: Use 'modify-phases'.
* gnu/packages/mail.scm (bogofilter)[arguments]: Use 'modify-phases'.
2016-12-20 22:43:06 +02:00
Efraim Flashner 329e0a9ca0
gnu: mutt: Update to 1.7.2.
* gnu/packages/mail.scm (mutt): Update to 1.7.2.
2016-12-20 22:43:06 +02:00
Efraim Flashner de75f0b1bf
gnu: mailutils: Use 'modify-phases' syntax.
* gnu/packages/mail.scm (mailutils)[arguments]: Use 'modify-phases'.
2016-12-20 22:43:06 +02:00
Efraim Flashner abe5d2dc8d
gnu: mailutils: Update to 3.1.1.
* gnu/packages/mail.scm (mailutils): Update to 3.1.1.
[inputs]: Build with current readline.
[arguments]: Set sysconfdir as /etc.
[home-page]: Use https.
2016-12-20 22:43:05 +02:00
Efraim Flashner e31d35de3f
gnu: gnupg: Remove unneeded input.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Remove adns.
2016-12-20 22:43:01 +02:00
Leo Famulari 8cb3e7e7de
gnu: borg: Update to 1.0.9.
* gnu/packages/backup.scm (borg): Update to 1.0.9.
[arguments]: Run the check phase in its own directory. Skip the test
'test_get_security_dir'.
2016-12-20 14:50:19 -05:00
Leo Famulari 4f6ff977c2
gnu: nss: Add comment about test failures in NSS 3.27.2
* gnu/packages/gnuzilla.scm (nss): Add comment.
2016-12-20 14:44:53 -05:00
Leo Famulari 6eda11de44
Revert "gnu: nss, nss-certs: Update to 3.27.2."
This reverts commit 7ab3ea4266.
2016-12-20 14:35:21 -05:00
Ricardo Wurmus 62a3179395
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to c8e2219c.
(guix): Set to GUIX-DEVEL.
2016-12-20 18:06:00 +01:00
Ricardo Wurmus c8e2219cfb
gnu: guix: Update to 0.12.0.
* gnu/packages/package-management.scm (guix-0.11.0): Rename to...
(guix-0.12.0): ... this.  Adjust users.
(guix): Set to GUIX-0.12.0.
2016-12-20 17:58:06 +01:00
ng0 7d2511bc6b
gnu: Add alsa-plugins.
* gnu/packages/linux.scm (alsa-plugins): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-12-20 10:22:06 -05:00
Marius Bakke 06fcd4a89e
gnu: gnupg: Update to 2.1.17.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.17.
2016-12-20 15:48:24 +01:00
Ludovic Courtès 4a78638f1f
gnu: cuirass: Make sure 'cuirass' has 'evaluate' in $PATH.
* gnu/packages/ci.scm (cuirass)[arguments]: Add OUT/bin to 'PATH'.
2016-12-20 10:27:08 +01:00
John Darrington 8c4e99cca3
gnu: Fix load-extension path in packaging of guile-ncurses.
* gnu/packages/guile.scm (guile-ncurses) [arguments]: Install shared object before
attempting to build the package.  Patch load-extension path before building instead
of after.
2016-12-20 06:43:29 +01:00
Tobias Geerinckx-Rice 1feeb2e035
gnu: argon2: Update to 20161029.
* gnu/packages/password-utils.scm (argon2): Update to 20161029.
2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 934ba12f3d
gnu: cppcheck: Update to 1.76.1.
* gnu/packages/check.scm (cppcheck): Update to 1.76.1.
2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 17c2294c24
gnu: hunspell: Add missing perl dependency.
* gnu/packages/libreoffice.scm (hunspell)[inputs]: Add perl dependency
for ispellaff2myspell.
2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 4dec10baa8
gnu: hunspell: Update to 1.5.4.
* gnu/packages/libreoffice.scm (hunspell): Update to 1.5.4.
[source]: Add a file-name.
2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice d36935cdd1
gnu: Add Ancient Greek Aspell dictionary.
* gnu/packages/aspell.scm (aspell-dict-grc): New variable.
2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice 707ee32471
gnu: aspell-dictionary: Use ‘modify-phases’ syntax.
* gnu/packages/aspell.scm (aspell-dictionary)[arguments]: Use
‘modify-phases’.
2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice f87b8e25c3
gnu: weechat: Use new xz-compressed tarball.
* gnu/packages/irc.scm (weechat)[source]: Use ‘.tar.xz’ source.
2016-12-20 05:36:56 +01:00
Tobias Geerinckx-Rice 33d5b2464d
gnu: cutadapt: Use ‘modify-phases’ syntax.
* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Use
‘modify-phases’.
2016-12-20 05:36:55 +01:00
Efraim Flashner 2fb5af2c2b
gnu: enlightenment: Update to 0.21.5.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.5.
2016-12-20 04:22:29 +02:00
Efraim Flashner 0870372159
gnu: tor: Update to 0.2.9.8.
* gnu/packages/tor.scm (tor): Update to 0.2.9.8.
2016-12-20 03:55:38 +02:00
Ludovic Courtès 2eadd8285a
gnu: cuirass: Add Git to 'PATH'.
* gnu/packages/ci.scm (cuirass)[arguments]: In 'wrap-program' phase, add
Git to 'PATH'.
[inputs]: Add GIT.
2016-12-19 23:57:18 +01:00
ng0 c27b31e8d2
gnu: utox: Fix description.
* gnu/packages/messaging.scm (utox): Fix description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 23:57:18 +01:00
ng0 c413c6ade8
gnu: utox: Update to 0.11.0.
* gnu/packages/messaging.scm (utox): Update to 0.11.0.
[source]: Update source uri to new group namespace on github.
[build-system]: Change to cmake-build-system.
[arguments]: Remove previous content and disable tests,
add two new phases.
[inputs]: Remove libtoxcore, add c-toxcore.
[native-inputs]: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 23:57:18 +01:00
ng0 0ed5554a01
gnu: Add c-toxcore.
* gnu/packages/messaging.scm (c-toxcore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 23:57:18 +01:00
Marius Bakke acb5f7c3fc
gnu: Add grub-efi.
* gnu/packages/grub.scm (grub-efi): New variable.
2016-12-19 23:43:47 +01:00
Marius Bakke 7d0910d4a7
Revert "gnu: grub: Add dependency on efibootmgr."
This reverts commit 3eee16130d.

Reverted in favor of separate grub-efi package. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2016-12/msg00765.html .
2016-12-19 23:43:47 +01:00
Marius Bakke 7d8f7ab9be
gnu: grub: Use qemu-minimal for tests.
* gnu/packages/grub.scm (qemu-for-tests): Remove variable.
(grub)[native-inputs]: Replace QEMU-FOR-TESTS with QEMU-MINIMAL.
2016-12-19 23:43:09 +01:00
Tobias Geerinckx-Rice 8d1ef002ee
gnu: linux-libre: Fix typo.
* gnu/packages/linux.scm (%linux-libre-hash): Remove excess quote.
2016-12-19 20:42:19 +01:00
Tobias Geerinckx-Rice 1f94bff2d4
gnu: cutadapt: Update to 1.12.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12.
[inputs]: Add python-xopen.
2016-12-19 20:33:32 +01:00
Tobias Geerinckx-Rice 361a2fcf8d
gnu: Add python-xopen.
* gnu/packages/python.scm (python-xopen, python2-xopen): New variables.
2016-12-19 20:33:31 +01:00
Mark H Weaver 565775399e
gnu: linux-libre: Update to 4.8.15.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.15.
2016-12-19 14:07:27 -05:00
Mark H Weaver 9cedffe5db
Revert "gnu: linux-libre: Update to 4.9."
This reverts commit 5a3849443a.

Module loading is broken on i686 with some configurations, including our
default configuration.  See <https://bugs.gnu.org/25231>.
2016-12-19 14:03:41 -05:00
Marius Bakke a25b6880f1
gnu: python-efl: Disable tests.
* gnu/packages/enlightenment.scm (python-efl, python2-efl)[arguments]: Add
phase to set test environment. And set #:tests? #f.
2016-12-19 18:13:24 +01:00
Thomas Danckaert 834d12226b
gnu: kdbusaddons: Embed kinit store dir, avoid dependency cycles.
kdbusaddons needs to know the location of the kdeinit5 executable,
provided by kinit. kinit depends on kdbusaddons, so we add bootstrap
versions of all packages in the dependency chain from kinit to
kdbusaddons to avoid cyclic dependencies.

* gnu/packages/kde-frameworks.scm (kinit-bootstrap,
  kdbusaddons-bootstrap): New variables.
  (kdbusaddons)[inputs]: Add kinit-bootstrap.
  [source,arguments]: Add patch and substitution to embed
  kinit-bootstrap's store directory in the code.
* gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 17:51:00 +01:00
Leo Famulari 43686dcb2f
gnu: openssh: Update to 7.4p1.
* gnu/packages/ssh.scm (openssh): Update to 7.4p1.
[source]: Remove 'openssh-memory-exhaustion.patch'.
* gnu/packages/patches/openssh-memory-exhaustion.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-19 10:54:11 -05:00
Leo Famulari 307349f6f7
gnu: samba: Update to 4.5.3 [fixes CVE-2016-{2123,2125,2126}].
* gnu/packages/samba.scm (samba): Update to 4.5.3.
2016-12-19 09:50:02 -05:00
Marius Bakke 94a84d8367
gnu: pcsc-lite: Update to 1.8.19.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.19.
2016-12-19 14:27:33 +01:00
Manolis Ragkousis be6a70edc2
gnu: hurd-headers: Update to 0.9.
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.9.
2016-12-19 12:04:48 +02:00
Manolis Ragkousis 9c9402be2e
gnu: mig: Update to 1.8.
* gnu/packages/hurd.scm (mig): Update to version 1.8.
2016-12-19 12:04:43 +02:00
Manolis Ragkousis d950f03848
gnu: gnumach-headers: Update to 1.8.
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.8.
2016-12-19 12:04:21 +02:00
Kei Kebreau 5f80054053
gnu: gnuplot: Update to 5.0.5.
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
2016-12-18 23:27:43 -05:00
Marius Bakke c0b12a606b
gnu: sshoot: Fix tests.
* gnu/packages/vpn.scm (sshoot)[arguments]: Add 'patch-paths' phase.
2016-12-19 04:13:59 +01:00
Marius Bakke 1c1b67a3c9
gnu: thefuck: Correct inputs and disable tests.
* gnu/packages/admin.scm (thefuck)[arguments]: Set #:tests? #f.
[inputs]: Move everything to ...
[propagated-inputs]: ... here. Remove duplicate [inputs] and python-setuptools.
[native-inputs]: Add python-pytest, python-pytest-mock and python-mock.
2016-12-19 01:28:27 +01:00
Kei Kebreau 5a2604bfb6
gnu: wxmaxima: Update to 16.12.0.
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
2016-12-18 14:05:40 -05:00
Kei Kebreau 55b2756906
gnu: tor: split description into two parts for easier reading.
* gnu/packages/tor.scm (tor)[description]: Split it.
2016-12-18 13:00:11 -05:00
Kei Kebreau 4a652c78d4
gnu: maxima: Update to 5.39.0.
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
2016-12-18 12:57:09 -05:00
Marius Bakke 0599416520
gnu: mumble: Update to 1.2.18.
* gnu/packages/telephony.scm (mumble): Update to 1.2.18.
2016-12-18 16:53:21 +01:00
Hartmut Goebel 00e0ca7ccb
gnu: python-docutils: Update to 0.13.1
* gnu/packages/python.scm(python-docutils): Update to 0.13.1.
[source]: Use pypi-uri.
2016-12-18 16:31:35 +01:00
Ludovic Courtès 8a4c988892
build: check-final-inputs-self-contained has an exception for 'bash:include'.
Currently 'bash:include' of the final Bash depends on bootstrap stuff.

* build-aux/check-final-inputs-self-contained.scm (final-inputs): Add
clause for 'bash:include'.
* gnu/packages/commencement.scm (bash-final): Add FIXME comment.
2016-12-18 12:37:26 +01:00
Ricardo Wurmus 5073ecf055
gnu: yoshimi: Update to 1.5.0.
* gnu/packages/music.scm (yoshimi): Update to 1.5.0.
2016-12-18 12:00:33 +01:00
Nicolas Goaziou 36a318adc7
gnu: emacs-org: Update to 20161214.
* gnu/packages/emacs.scm (emacs-org): Update to 20161214.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2016-12-18 17:05:45 +08:00
Leo Famulari 51d8395ac6
gnu: youtube-dl: Update to 2016.12.15.
* gnu/packages/video.scm (youtube-dl): Update to 2016.12.15.
2016-12-17 20:27:21 -05:00
Raoul Bonnal a1814e4a27
gnu: r: Update to 3.3.2.
* gnu/packages/statistics.scm (r): Update to 3.3.2.
2016-12-18 10:02:52 +10:00
Ben Woodcroft 3fffabce2a
gnu: Add attribution line for Raoul Bonnal.
This is a follow-up commit to c9e9154e99.

* gnu/packages/bioinformatics.scm: Add attribution.
2016-12-18 10:01:04 +10:00
Marius Bakke 7b6ff42aa3
gnu: git-annex-remote-hubic: Fix python-dateutil dependency.
This is a followup to 22d7360b16.

* gnu/packages/version-control.scm (git-annex-remote-hubic)[propagated-inputs]:
Change python-dateutil-2 to python-dateutil.
2016-12-18 00:44:09 +01:00
Ludovic Courtès a32d0c8304
gnu: sane-backends: Remove timestamps from the output.
* gnu/packages/scanner.scm (sane-backends-minimal)[source](modules, snippet):
New fields.
2016-12-17 23:13:05 +01:00
Andy Patterson 4c92874328
gnu: Add and use sane-backends.
* gnu/packages/scanner.scm (sane-backends): New variable.
* gnu/packages/gnome.scm (colord, simple-scan): Use it instead of
'sane-backends-minimal'.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-17 23:13:05 +01:00
Andy Patterson 32aa37a2e7
gnu: Add and use sane-backends-minimal.
* gnu/packages/scanner.scm (sane-backends): Rename to...
(sane-backends-minimal): this. Adjust name, source, synopsis and
description accordingly.
* gnu/packages/cups.scm (hplip): Use 'sane-backends-minimal' instead of
'sane-backends'.
* gnu/packages/gnome.scm (colord, simple-scan): Likewise.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-17 23:13:04 +01:00
Andy Patterson 33a14e29f9
gnu: sane-backends: Disable backend generation.
* gnu/packages/scanner.scm (sane-backends)[arguments]: Add a phase to
disable the compilation of backends.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-17 23:13:04 +01:00
Leo Famulari 9b1d77f6d4
gnu: pinentry: Update to 1.0.0.
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.0.0.
2016-12-17 13:40:42 -05:00
Leo Famulari 402efb61d3
gnu: npth: Update to 1.3.
* gnu/packages/gnupg.scm (npth): Update to 1.3.
2016-12-17 13:40:42 -05:00
Ludovic Courtès d44fb7dd60
gnu: bootstrap: Add FTP URL for bootstrap binaries.
* gnu/packages/bootstrap.scm (%bootstrap-base-urls): Add
ftp://alpha.gnu.org (http://alpha.gnu.org is currently unresponsive.)
2016-12-17 14:46:42 +01:00
Raoul Bonnal c9e9154e99
gnu: star: Update to 2.5.2b.
* gnu/packages/bioinformatics (star): Update to 2.5.2b.
[source]: Delete precompiled binary.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2016-12-17 23:26:35 +10:00
Marius Bakke 39d0de3375
gnu: asciinema: Fix test requirements.
* gnu/packages/terminals.scm (asciinema)[native-inputs]: Add python-requests.
2016-12-17 12:19:41 +01:00
Marius Bakke 51ad11ad62
gnu: Add fatfsck-static.
* gnu/packages/disk.scm (dosfstools/static): New private variable.
(fatfsck/static): New variable.
2016-12-17 10:13:22 +01:00
Alex Kost 64e43c674e
gnu: Add emacs-guix.
* gnu/packages/emacs.scm (emacs-guix): New variable.
2016-12-17 10:56:39 +03:00
Alex Kost 753baf775f
gnu: Add emacs-bui.
* gnu/packages/emacs.scm (emacs-bui): New variable.
2016-12-17 10:56:39 +03:00
Leo Famulari e02f1473da
gnu: libgcrypt: Update to 1.7.5.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.7.5.
2016-12-17 00:56:48 -05:00
Leo Famulari c7ec7c9926
gnu: imagemagick: Update to 6.9.6-8.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-8.
2016-12-17 00:46:48 -05:00
Leo Famulari 7c1a7bf484
gnu: acme-client: Provide path to certificates.
* gnu/packages/tls.scm (acme-client)[arguments]: Add 'patch-paths' phase.
2016-12-17 00:09:10 -05:00
Leo Famulari f8faf537ca
gnu: libupnp: Fix CVE-2016-8863.
* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/libupnp.scm (libupnp)[source]: Use it.
2016-12-16 15:28:02 -05:00
Marius Bakke cdc2bb50b2
gnu: pbtranscript-tofu: Disable tests.
* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Set #:tests? #f.
2016-12-16 18:15:47 +01:00
Theodoros Foradis 850812decf
gnu: Add Greek Aspell dictionary
* gnu/packages/aspell.scm (aspell-dict-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-16 18:04:55 +01:00
ng0 fc9286d03a
gnu: tor: Recommend torsocks.
* gnu/packages/tor.scm (tor)[description]: Recommend torsocks.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-12-16 10:49:01 -05:00
Marius Bakke ee94ca11a1
gnu: python-beautifulsoup4: Fix python2 variant.
This is a followup to 5f37f0b66e.

* gnu/packages/python.scm (python-beautifulsoup4)[properties]: New
  field. Delay python2 variant.
2016-12-16 16:15:41 +01:00
Marius Bakke 752eb9e0d8
gnu: python2-kombu: Disable tests.
* gnu/packages/python.scm (python2-kombu)[arguments]: Set #:tests? #f.
2016-12-16 15:33:13 +01:00
Ludovic Courtès 3eee16130d
gnu: grub: Add dependency on efibootmgr.
Suggested by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/grub.scm (grub)[arguments]: In 'patch-stuff', set
efibootmgr absolute file name in 'platform.c'.
[inputs]: Add EFIBOOTMGR.
2016-12-16 14:45:56 +01:00
Marius Bakke 7c6bf660d8
gnu: python-pyopenssl: Enable tests.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[source]: Use it.
[arguments]: Replace 'check' with custom phase.
2016-12-16 14:36:15 +01:00
Marius Bakke 329553482d
gnu: ptpython: Disable tests.
* gnu/packages/python.scm (ptpython, ptpython2)[arguments]: Set #:tests? #f.
2016-12-16 13:39:07 +01:00
Marius Bakke 0d90875974
gnu: multiqc: Fix test dependencies.
* gnu/packages/bioinformatics.scm (multiqc)[native-inputs]: Add python-nose.
2016-12-16 13:28:49 +01:00
Marius Bakke 52f622ef9f
gnu: python-sympy: Update to 1.0.
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.0.
[propagated-inputs]: Add python-mpmath.
2016-12-16 13:22:12 +01:00
Marius Bakke 58a35665d9
gnu: Add python-mpmath.
* gnu/packages/python.scm (python-mpmath, python2-mpmath): New variables.
2016-12-16 13:22:10 +01:00
Marius Bakke 14386fc7d9
gnu: idr: Remove explicit wrapper. This is now done implicitly.
* gnu/packages/bioinformatics.scm (idr)[arguments]: Remove #:phases.
2016-12-16 13:16:39 +01:00
Marius Bakke b7a820fc97
gnu: idr: Correct inputs.
* gnu/packages/bioinformatics.scm (idr)[inputs]: Move everything from here ...
[propagated-inputs]: ... to here. Add python-sympy.
2016-12-16 13:11:20 +01:00
Marius Bakke 1c10a1d75c
gnu: idr: Disable tests.
* gnu/packages/bioinformatics.scm (idr)[arguments]: Set #:tests? #f.
2016-12-16 13:08:57 +01:00
Tobias Geerinckx-Rice c8502d9ec1
Revert "gnu: kmod: Update to 23."
This should have been pushed to the ‘staging’ branch first.

This reverts commit 1e1cd41629.
2016-12-16 12:19:50 +01:00
Marius Bakke aaffb9c97b
gnu: deeptools: Fix test dependency.
* gnu/packages/bioinformatics.scm (deeptools)[native-inputs]: Add python-nose.
2016-12-16 04:27:35 +01:00
Marius Bakke d281be18bc
gnu: clipper: Fix test dependency.
* gnu/packages/bioinformatics.scm (clipper)[native-inputs]: Add python2-nose.
2016-12-16 04:26:32 +01:00
Tobias Geerinckx-Rice 68ea090b93
gnu: libcap: Update to 2.25.
* gnu/packages/linux.scm (libcap): Update to 2.25.
2016-12-16 03:09:13 +01:00
Tobias Geerinckx-Rice 7c58c852c4
gnu: libraw1394: Update to 2.1.2.
* gnu/packages/linux.scm (libraw1394): Update to 2.1.2.
2016-12-16 03:08:43 +01:00
Tobias Geerinckx-Rice 1e1cd41629
gnu: kmod: Update to 23.
* gnu/packages/linux.scm (kmod): Update to 23.
2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice 3fe7cb872a
gnu: ethtool: Update to 4.8.
* gnu/packages/networking.scm (ethtool): Update to 4.8.
2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice 7d162df8ce
gnu: mcelog: Update to 146.
* gnu/packages/linux.scm (mcelog): Update to 146.
2016-12-16 03:08:41 +01:00
Marius Bakke 154d207c43
gnu: python-apsw: Fix tests.
* gnu/packages/python.scm (python-apsw, python2-apsw)[arguments]: Use
  'modify-phases'. Add installed PYTHONPATH before running tests.
2016-12-16 02:45:49 +01:00
Mark H Weaver 0eb36dd17f
gnu: linux-libre@4.4: Update to 4.4.39.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.39.
2016-12-15 20:35:24 -05:00
Marius Bakke 80ce42bdbf
gnu: python-argcomplete: Fix tests.
* gnu/packages/python.scm (python-argcomplete,
  python2-argcomplete)[native-inputs]: Add python-pexpect and tcsh.
2016-12-16 02:16:23 +01:00
Marius Bakke 58f5fae7c4
gnu: python-widgetsnbextension: Fix tests.
* gnu/packages/python.scm (python-widgetsnbextension,
  python2-widgetsnbextension)[native-inputs]: Add python-certifi.
2016-12-16 02:14:54 +01:00
Marius Bakke ed11804309
gnu: python-pexpect: Update to 4.2.1.
* gnu/packages/python.scm (python-pexpect, python2-pexpect): Update to 4.2.1.
[source]: Use 'pypi-uri'.
[arguments]: Add 'prepare-tests' phase to patch paths and delete network test.
[native-inputs]: Add python-pytest, man-db and which.
[propagated-inputs]: Add python-ptyprocess.
2016-12-16 02:10:58 +01:00
Marius Bakke 01fb9f6638
gnu: python-axolotl: Remove workaround for bug #20765.
* gnu/packages/python.scm (python-axolotl, python2-axolotl)[arguments]:
Remove #:configure-flags.
2016-12-16 01:07:41 +01:00
Marius Bakke 22d7360b16
gnu: Remove python-dateutil@1.5.
* gnu/packages/python.scm (python-dateutil-2, python2-dateutil-2): Rename to ...
(python-dateutil, python2-dateutil): ... this. Remove 1.5 version.
(python-tzlocal, python2-tzlocal): Adjust variable name.
(python-rst.linker, python2-rst.linker): Likewise.
(pelican): Likewise.
(python-matplotlib, python2-matplotlib): Likewise.
(python-sqlalchemy-utils, python2-sqlalchemy-utils): Likewise.
(python-icalendar, python2-icalendar): Likewise.
(python-botocore, python2-botocore): Likewise.
(python-vobject, python2-vobject): Likewise.
(python-arrow, python2-arrow): Likewise.
(python-fake-factory, python2-fake-factory): Likewise.
(python-freezegun, python2-freezegun): Likewise.
(python-aniso8601, python2-aniso8601): Likewise.
* gnu/packages/jrnl.scm (jrnl): Likewise.
* gnu/packages/calendar.scm (limnoria): Likewise.
2016-12-16 00:54:48 +01:00
Leo Famulari fb73f07a0f
gnu: guile-irregex: Update to 0.9.6 [fixes CVE-2016-9954].
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.6.
2016-12-15 18:40:19 -05:00
Mathieu Lirzin 44ccd9622e
gnu: cuirass: Update to revision 2.
* gnu/packages/ci.scm (cuirass): Update to revision 2.
[native-inputs]: Add texinfo.
2016-12-15 22:50:24 +01:00
Tobias Geerinckx-Rice 177de53784
gnu: libpsl: Update to 0.16.0.
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
2016-12-15 21:05:05 +01:00
Marius Bakke 59f74825d6
gnu: python-flask-restplus: Disable tests.
* gnu/packages/python.scm (python-flask-restplus)[arguments]: Set #:tests? #f.
2016-12-15 19:56:44 +01:00
Marius Bakke ad348f9f39
gnu: python-gridmap: Disable tests.
* gnu/packages/python.scm (python-gridmap, python2-gridmap)[arguments]:
Set #:tests? #f.
2016-12-15 19:50:12 +01:00
Marius Bakke 15c37077bc
gnu: python-hy: Fix test suite.
* gnu/packages/python.scm (python-hy, python2-hy)[arguments]: Replace 'check'
phase with custom command.
[native-inputs]: Add python-coverage and python-nose.
2016-12-15 19:49:06 +01:00
Tobias Geerinckx-Rice 426aecfd48
gnu: openconnect: Update to 7.08.
* gnu/packages/vpn.scm (openconnect): Update to 7.09.
2016-12-15 19:31:45 +01:00
Marius Bakke 8653c1d557
gnu: python-py3status: Disable tests.
* gnu/packages/python.scm (python-py3status)[arguments]: Set #:tests? #f.
2016-12-15 19:09:18 +01:00
Marius Bakke 810f89839c
gnu: python-pylast: Disable tests.
* gnu/packages/music.scm (python-pylast, python2-pylast)[arguments]:
Set #:tests? #f.
2016-12-15 19:06:12 +01:00
Marius Bakke 0a70200951
gnu: python-pyserial: Disable tests.
* gnu/packages/python.scm (python-pyserial, python2-pyserial)[arguments]:
Set #:tests? #f.
2016-12-15 18:42:22 +01:00
Marius Bakke 8bd5164b4a
gnu: python-pystache: Disable tests for python3 variant.
* gnu/packages/python.scm (python-pystache)[arguments]: Disable tests.
[properties]: New field. Delay python2 variant.
(python2-pystache)[arguments]: Replace 'check' phase with custom command.
2016-12-15 18:35:21 +01:00
Marius Bakke 1f31a5e0bf
gnu: python-pytest-django: Disable tests.
* gnu/packages/django.scm (python-pytest-django,
  python2-pytest-django)[arguments]: Set #:tests? #f.
2016-12-15 18:19:34 +01:00
Marius Bakke 4eb385fb33
gnu: python-pytest-xdist: Disable tests.
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[arguments]: Set #:tests? #f.
2016-12-15 18:11:43 +01:00
Marius Bakke 9e378e6a5c
gnu: python-reportlab: Fix tests.
* gnu/packages/pdf.scm (python-reportlab, python2-reportlab)[arguments]:
Set #:test-target.
2016-12-15 17:55:36 +01:00
Marius Bakke 444464ec28
gnu: python-rpy2: Fix tests.
* gnu/packages/python.scm (python-rpy2, python2-rpy2)[arguments]: Replace
  check phase with custom post-install command.
2016-12-15 17:55:36 +01:00
Marius Bakke 6f976df677
gnu: python-seaborn: Disable tests.
* gnu/packages/python.scm (python-seaborn, python2-seaborn)[arguments]:
  Disable tests.
2016-12-15 17:31:29 +01:00
Marius Bakke 35d56b7b60
gnu: python-sqlalchemy-utils: Disable tests.
* gnu/packages/python.scm (python-sqlalchemy-utils,
  python2-sqlalchemy-utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-dateutil-2, python-flexmock, python-pcycopg2 and
  python-pytz.
2016-12-15 17:26:42 +01:00
Thomas Danckaert 7781afde65
gnu: Add kdevelop.
* gnu/packages/kde.scm (kdevelop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 17:11:32 +01:00
Thomas Danckaert c02c8cf4a8
gnu: Add kdevplatform.
* gnu/packages/kde.scm (kdevplatform): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 17:09:27 +01:00
Thomas Danckaert 7c1a52090d
gnu: libksysguard: Correct inputs.
* gnu/packages/kde.scm (libksysguard)[inputs]: Remove kdbusaddons,
  kdoctools, kinit, knewstruff, knotifications, kio; add kauth,
  kcompletion, kconfig, kcoreaddons, kwidgetsaddons.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 17:06:49 +01:00
Marius Bakke bfba083684
gnu: python-keystoneclient: Disable tests.
* gnu/packages/openstack.scm (python-keystoneclient,
  python2-keystoneclient)[arguments]: Set #:tests? #f.
2016-12-15 16:55:17 +01:00
Chris Marusich eee7878f4e
gnu: gnome-settings-daemon: Add dependency on NetworkManager.
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Remove
"--disable-network-manager".
[inputs]: Add NETWORK-MANAGER.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 16:51:11 +01:00
Chris Marusich fd070f35d3
gnu: network-manager: Enable session tracking with elogind.
* gnu/packages/gnome.scm (network-manager): Add configuration options
  "--with-systemd-logind=yes" (so we can use elogind to track login sessions)
  and "--with-consolekit=no" (so we don't use consolekit to track sessions,
  since it isn't packaged yet).  Add elogind as an input, and add a snippet to
  replace some references to systemd with elogind.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 16:50:48 +01:00
Marius Bakke c616b5d3b5
gnu: python-oauthlib: Fix tests.
* gnu/packages/python.scm (python-oauthlib)[native-inputs]:
  Add python-mock.
(python2-oauthlib)[native-inputs]: Inherit python-mock.
2016-12-15 16:50:15 +01:00
Marius Bakke f959495ba0
gnu: python-tempest-lib: Disable tests.
* gnu/packages/openstack.scm (python-tempest-lib,
  python2-tempest-lib)[arguments]: Set #:tests? #f.
2016-12-15 15:23:39 +01:00
Marius Bakke 73b494a11d
gnu: python-oslo.log: Disable tests.
* gnu/packages/openstack.scm (python-oslo.log, python2-oslo.log)[arguments]:
  Set #:tests? #f.
2016-12-15 15:22:16 +01:00
Marius Bakke 49910e6a7c
gnu: python-paramiko: Disable tests.
* gnu/packages/python.scm (python-paramiko, python2-paramiko)[arguments]:
Set #:tests? #f.
2016-12-15 14:01:27 +01:00
Marius Bakke 5ae31b547c
gnu: python-oslo.serialization: Disable tests.
* gnu/packages/openstack.scm (python-oslo.serialization,
  python2-oslo.serialization)[arguments]: Set #:tests? #f.
2016-12-15 13:55:54 +01:00
Marius Bakke ad59ebda53
gnu: python-oslo.utils: Disable tests.
* gnu/packages/openstack.scm (python-oslo.utils,
  python2-oslo.utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-bandit and python-oslo.config.
2016-12-15 13:50:55 +01:00
Marius Bakke d9184f4f76
gnu: python-oslo.config: Disable tests.
* gnu/packages/openstack.scm (python-oslo.config,
  python2-oslo.config)[arguments]: Set #:tests? #f.
2016-12-15 13:49:08 +01:00
Marius Bakke 130f68ec3b
gnu: python-stevedore: Fix tests.
* gnu/packages/openstack.scm (python-stevedore,
  python2-stevedore)[native-inputs]: Add python-discover, python-oslosphinx,
  python-sphinx and python-testrepository.
2016-12-15 13:45:07 +01:00
Marius Bakke bb56d9a18c
gnu: python-oslo.i18n: Disable tests.
* gnu/packages/openstack.scm (python-oslo.i18n, python2-oslo.i18n)[arguments]:
  Set #:tests? #f.
2016-12-15 13:35:57 +01:00
Marius Bakke f30e53369b
gnu: python-oslo.context: Disable tests.
* gnu/packages/openstack.scm (python-oslo.context,
  python2-oslo.context)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-coverage, python-hacking, python-mock,
  python-os-client-config, python-oslosphinx and python-sphinx.
2016-12-15 13:33:16 +01:00
Marius Bakke 767c7e0ed1
gnu: python-debtcollector: Disable tests.
* gnu/packages/openstack.scm (python-debtcollector,
  python2-debtcollector)[arguments]: Set #:tests? #f.
2016-12-15 13:23:56 +01:00
Marius Bakke 7917a13554
gnu: python-termstyle: Fix tests.
* gnu/packages/python.scm (python-termstyle)[arguments]: Replace 'check' phase
with custom command.
2016-12-15 13:17:29 +01:00
Marius Bakke a960e73fad
gnu: python-twisted: Disable tests.
* gnu/packages/python.scm (python-twisted, python2-twisted)[arguments]:
Set #:tests? #f.
2016-12-15 13:13:23 +01:00
Marius Bakke a74f9b12ae
gnu: python-zope-security: Disable tests.
* gnu/packages/python.scm (python-zope-security,
  python2-zope-security)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-six.
2016-12-15 12:45:26 +01:00
Marius Bakke 40bb8e07ae
gnu: python-zope-location: Disable tests.
* gnu/packages/python.scm (python-zope-location,
  python2-zope-location)[arguments]: Set #:tests? #f.
2016-12-15 12:42:39 +01:00
Marius Bakke 66b3aadb73
gnu: python-zope-proxy: Disable tests.
* gnu/packages/python.scm (python-zope-proxy, python2-zope-proxy)[arguments]:
  Set #:tests? #f.
2016-12-15 12:40:10 +01:00
Marius Bakke 7e8b1bfa4b
gnu: python-zope-configuration: Disable tests.
* gnu/packages/python.scm (python-zope-configuration,
  python2-zope-configuration)[arguments]: Set #:tests? #f.
2016-12-15 12:38:04 +01:00
Marius Bakke 22dba2eff9
gnu: python-zope-interface: Disable tests.
* gnu/packages/python.scm (python-zope-schema,
  python2-zope-schema)[arguments]: Set #:tests? #f.
2016-12-15 12:35:26 +01:00
Marius Bakke 385871e5f7
gnu: python-zope-testrunner: Disable tests.
* gnu/packages/python.scm (python-zope-testrunner,
  python2-zope-testrunner)[arguments]: Set #:tests? #f.
2016-12-15 12:12:13 +01:00
Marius Bakke 7b93d86670
gnu: snakemake: Update to 3.9.0.
* gnu/packages/python.scm (snakemake): Update to 3.9.0.
[source]: Use 'pypi-uri'.
[arguments]: Disable tests.
[home-page]: Update.
2016-12-15 10:12:38 +01:00
Marius Bakke 972cf9be52
gnu: python-ly: Disable tests.
* gnu/packages/python.scm (python-ly): Set #:tests? #f.
2016-12-15 10:02:41 +01:00
Mark H Weaver 48ef3f9d9c
gnu: icecat: Label patches that have since been assigned CVEs.
Document that the following CVEs are fixed: CVE-2016-9893, CVE-2016-9895,
CVE-2016-9897, CVE-2016-9898, CVE-2016-9899, CVE-2016-9900, CVE-2016-9901,
CVE-2016-9902, CVE-2016-9904, and CVE-2016-9905.  Note that these are all of
the CVEs fixed in Firefox ESR 45.6.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add comments to patches that
have since been assigned CVEs.
2016-12-14 19:55:26 -05:00
Marius Bakke 9026e6890a
gnu: python-scikit-image: Disable tests.
* gnu/packages/python.scm (python-scikit-image,
  python2-scikit-image)[arguments]: Set #:tests? #f.
2016-12-14 23:01:40 +01:00
Marius Bakke bfce8a344d
gnu: python-jedi: Disable tests.
* gnu/packages/python.scm (python-jedi, python2-jedi)[arguments]: Disable
  tests.
  [native-inputs]: Add python-pytest.
2016-12-14 22:59:56 +01:00
Marius Bakke ee4722411f
gnu: python-rdflib: Disable tests.
* gnu/packages/rdf.scm (python-rdflib)[arguments]: Set #:tests? #f.
[native-inputs]: Add python-nose.
(python2-rdflib)[inputs]: Remove field. Use 'package-with-python2'.
2016-12-14 22:24:50 +01:00
Tobias Geerinckx-Rice 0c6c9c00ab
gnu: Update more dead Google Code home pages.
* gnu/packages/bioinformatics.scm (cutadapt, mosaik, pepr)[home-page]:
Update to their respective replacements.
2016-12-14 22:08:51 +01:00
Marius Bakke 6145b60462
gnu: python-clint: Fix tests.
* gnu/packages/python.scm (python-clint, python2-clint)[native-inputs]: Add
  python-pytest.
  [arguments]: Replace 'check' phase with custom command.
2016-12-14 22:07:38 +01:00
Marius Bakke b7f3ea9532
gnu: python-fake-factory: Fix tests.
* gnu/packages/python.scm (python-fake-factory,
  python2-fake-factory)[arguments]: Replace 'check' phase with custom command.
2016-12-14 22:01:36 +01:00
Tobias Geerinckx-Rice 62d652a710
gnu: mdds: Replace dead Google Code home-page.
* gnu/packages/boost.scm (mdds)[home-page]: Update it.
2016-12-14 21:59:40 +01:00
Tobias Geerinckx-Rice 50995554f8
gnu: chibi-scheme: Replace dead Google Code home-page.
* gnu/packages/scheme.scm (chibi-scheme)[home-page]: Update it.
2016-12-14 21:59:39 +01:00
Tobias Geerinckx-Rice 6b7877e12c
gnu: python-mock: Update source and home-page URIs.
* gnu/packages/python.scm (python-mock)[source]: Use ‘pypi-uri’.
[home-page]: Replace dead Google Code home page.
2016-12-14 21:59:39 +01:00
Ricardo Wurmus 958f657656
gnu: libosinfo: Use stable URL for pci.ids.
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Use a stable URL for
the pci.ids file.
2016-12-14 21:58:32 +01:00
Tobias Geerinckx-Rice 8471a8d1fe
gnu: xkeyboard-config: Update to 2.19.
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.19.
2016-12-14 20:04:23 +01:00
Marius Bakke f620311a39
gnu: python-pyaml: Fix tests.
* gnu/packages/python.scm (python-pyaml, python2-pyaml)[native-inputs]: Add
  python-unidecode.
2016-12-14 19:53:21 +01:00
Marius Bakke e912752567
gnu: python-inflection: Fix test requirements.
* gnu/packages/python.scm (python-inflection,
  python2-inflection)[native-inputs]: Add python-pytest.
2016-12-14 19:50:44 +01:00
Marius Bakke 877fdac9e3
gnu: python-botocore: Disable tests.
* gnu/packages/python.scm (python-botocore, python2-botocore): Set #:tests? #f.
2016-12-14 19:49:35 +01:00
Marius Bakke 52a75a83f9
gnu: python-jmespath: Fix tests.
* gnu/packages/python.scm (python-jmespath, python2-jmespath)[native-inputs]:
  Add python-nose.
2016-12-14 19:45:46 +01:00
Marius Bakke 1b6d7c3f3f
gnu: python2-fastlmm: Fix test requirements.
* gnu/packages/python.scm (python2-fastlmm)[native-inputs]: Add python2-nose.
2016-12-14 19:38:50 +01:00
Marius Bakke da5ebd1007
gnu: python-biom-format: Fix tests.
* gnu/packages/bioinformatics.scm (python-biom-format,
  python2-biom-format)[native-inputs]: Add python-nose.
2016-12-14 19:18:26 +01:00
Marius Bakke 27fab2bf65
gnu: python-cryptography: Update to 1.7.1.
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
  to 1.7.1.
  [arguments]: Remove field.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.7.1.
2016-12-14 19:12:14 +01:00
Tobias Geerinckx-Rice 938f66cb86
gnu: man-pages: Update to 4.09.
* gnu/packages/man.scm (man-pages): Update to 4.09.
2016-12-14 19:09:49 +01:00
Marius Bakke 30e0229a17
gnu: python-pyopenssl: Disable tests.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[arguments]:
Set #:tests? #f.
[native-inputs]: Add python-pytest.
2016-12-14 18:36:52 +01:00
Marius Bakke bd100c7112
gnu: python-hypothesis: Don't propagate test inputs.
* gnu/packages/python.scm (python-hypothesis,
  python2-hypothesis)[propagated-inputs]: Move everything from here ...
  [native-inputs]: ... to here.
(python2-hypothesis)[native-inputs]: Append inherited native-inputs.
2016-12-14 17:35:28 +01:00
David Craven ecee21473b
gnu: Add rustc.
* gnu/packages/rust.scm (rustc): New variable.

Co-authored-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
2016-12-14 16:30:43 +01:00
David Craven 423f9e4494
gnu: Add rust bootstrap binaries.
* gnu/packages/rust.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm.
2016-12-14 16:30:42 +01:00
David Craven 22897187c1
gnu: llvm: Enable install utils.
* gnu/packages/llvm.scm (llvm)[arguments]: Add -DLLVM_INSTALL_UTILS=ON
  to configure-flags.
2016-12-14 16:30:42 +01:00
Leo Famulari 7ab3ea4266
gnu: nss, nss-certs: Update to 3.27.2.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.2.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.2.
2016-12-14 10:19:32 -05:00
Leo Famulari 5ac6b841c2
gnu: icedtea-8: Update to 3.2.0 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}].
* gnu/packages/java.scm (icedtea-8): Update to 3.2.0.
[arguments]: Pass '--disable-system-pcsc' and '--disable-system-sctp'
to #:configure-flags.
2016-12-14 10:19:32 -05:00
Leo Famulari ab129dac7d
gnu: icedtea-7: Update to 2.6.8 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}]
* gnu/packages/java.scm (icedtea-7): Update to 2.6.8.
2016-12-14 10:19:29 -05:00
Marius Bakke 497355dc09
gnu: python-nbconvert: Disable tests.
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert)[arguments]:
Set #:tests? #f.
[native-inputs]: Add python-pytest.
2016-12-14 12:59:40 +01:00
Marius Bakke 63b02364aa
gnu: python-iso8601: Fix test dependencies.
* gnu/packages/python.scm (python-iso8601, python2-iso8601)[native-inputs]:
  Add python-pytest.
2016-12-14 12:47:22 +01:00
Marius Bakke 55ab64516b
gnu: python-django-filter: Fix test suite.
* gnu/packages/django.scm (python-django-filter,
  python2-django-filter)[arguments]: Replace 'check' phase with custom command.
2016-12-14 12:43:36 +01:00
Marius Bakke 281cc11c8e
gnu: python-django-simple-math-captcha: Disable tests.
* gnu/packages/django.scm (python-django-simple-math-captcha,
  python2-django-simple-math-captcha)[arguments]: Set #:tests? #f.
2016-12-14 12:40:13 +01:00
Marius Bakke ea8907c5d5
gnu: python-mox3: Disable tests.
* gnu/packages/openstack.scm (python-mox3, python2-mox3)[arguments]: Disable
  tests.
  [native-inputs]: Add python-oslosphinx and python-sphinx.
2016-12-14 12:02:45 +01:00
Ben Woodcroft ce3f92e701
gnu: Add r-bit64.
* gnu/packages/statistics.scm (r-bit64): New variable.
2016-12-14 20:43:28 +10:00
Ben Woodcroft 42066e6b4a
gnu: Add r-bit.
* gnu/packages/statistics.scm (r-bit): New variable.
2016-12-14 20:43:28 +10:00
Marius Bakke 2ff4559b49
gnu: python-hacking: Disable tests.
* gnu/packages/openstack.scm (python-hacking, python2-hacking)[arguments]:
Set #:tests? #f.
2016-12-14 11:40:34 +01:00
Marius Bakke a717e8a698
gnu: python-flake8-2.2.4: Disable tests.
* gnu/packages/python.scm (python-flake8-2.2.4,
  python2-flake8-2.2.4)[arguments]: Set #:tests? #f.
2016-12-14 11:40:25 +01:00
Marius Bakke 73e3060d57
gnu: python-pep8-1.5.7: Disable tests.
* gnu/packages/python.scm (python-pep8-1.5.7, python2-pep8-1.5.7)[arguments]:
Set #:tests? #f.
2016-12-14 11:21:50 +01:00
Marius Bakke 0d84e1ef22
gnu: python-pyflakes-0.8.1: Disable tests.
* gnu/packages/python.scm (python-pyflakes-0.8.1,
  python2-pyflakes-0.8.1)[arguments]: Set #:tests? #f.
2016-12-14 11:19:11 +01:00
Marius Bakke 90110ef956
gnu: python-testrepository: Disable tests.
* gnu/packages/python.scm (python-testrepository, python2-testrepository):
Set #:tests? #f.
2016-12-14 10:46:47 +01:00
Marius Bakke f6c1ef1804
gnu: python-fixtures: Fix test suite.
* gnu/packages/python.scm (python-fixtures, python2-fixtures): Replace 'check'
  with custom phase.
  [native-inputs]: Add python-mock.
2016-12-14 10:40:21 +01:00
Marius Bakke fb08c4fedc
gnu: python-psutil: Disable tests.
* gnu/packages/python.scm (python-psutil, python2-psutil): Disable tests.
2016-12-14 10:18:33 +01:00
Mark H Weaver 5a3849443a
gnu: linux-libre: Update to 4.9.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-12-14 03:27:26 -05:00
Ludovic Courtès 4fbd0f4f86
gnu: guile-next: Update to 2.1.5.
* gnu/packages/guile.scm (guile-next): Update to 2.1.5.
[properties]: Add 'upstream-name', 'ftp-server', and 'ftp-directory'.
2016-12-14 08:48:38 +01:00
Leo Famulari 9d3a15b496
gnu: python-sphinx-rtd-theme: Build with python-sphinx.
* gnu/packages/python.scm (python-sphinx-rtd-theme,
python2-sphinx-rtd-theme)[propagated-inputs]: Add python-sphinx.
2016-12-13 20:54:34 -05:00
Leo Famulari 2b9e4bead9
gnu: python-zope-schema: Build with python-zope-exceptions.
* gnu/packages/python.scm (python-zope-schema,
python2-zope-schema)[propagated-inputs]: Add python-zope-schema.
2016-12-13 20:54:29 -05:00
Ludovic Courtès e8a463e646
gnu: usbutils: Update to 008.
* gnu/packages/linux.scm (usbutils): Update to 008.
[inputs]: Add EUDEV.
2016-12-14 00:22:49 +01:00
Ludovic Courtès 3232613e63
gnu: wireless-regdb: Update to 2016.06.10.
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.06.10.
2016-12-14 00:22:49 +01:00
Marius Bakke a792e1aa8d
gnu: python-cairocffi: Disable tests.
* gnu/packages/python.scm (python-cairocffi, python2-cairocffi)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:20 -05:00
Marius Bakke 6734c7bae3
gnu: python-cairocffi: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-cairocffi)[arguments]: Use 'modify-phases'.
2016-12-13 17:04:20 -05:00
Marius Bakke e2816ac72d
gnu: python-xcffib: Disable tests.
* gnu/packages/python.scm (python-xcffib, python2-xcffib)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:20 -05:00
Marius Bakke c8cd850c87
gnu: python-xcffib: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-xcffib)[arguments]: Use 'modify-phases'.
2016-12-13 17:04:19 -05:00
Marius Bakke cff0ccf9dc
gnu: python-requests: Disable tests.
* gnu/packages/python.scm (python-requests, python2-requests,
python-requests-2.7)[native-inputs]: Remove field.
[arguments]: New field. Set #:tests? #f.
2016-12-13 17:04:19 -05:00
Marius Bakke 97be1bc231
gnu: python-click: Fix tests.
* gnu/packages/python.scm (python-click, python2-click)[arguments]: Replace
'check' with custom phase.
[native-inputs]: Add python-pytest.
2016-12-13 17:04:19 -05:00
Marius Bakke 3fe2c209e0
gnu: python-tornado: Disable tests.
* gnu/packages/python.scm (python-tornado, python2-tornado)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:19 -05:00
Marius Bakke 03cb5f9edb
gnu: python-sphinx: Disable tests.
* gnu/packages/python.scm (python-sphinx, python2-sphinx)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:18 -05:00
Marius Bakke 995cb99e4b
gnu: python-pygments: Disable tests.
* gnu/packages/python.scm (python-pygments, python2-pygments)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:18 -05:00
Marius Bakke bd10e677d1
gnu: python-coverage: Disable tests.
* gnu/packages/python.scm (python-coverage, python2-coverage)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:18 -05:00
Marius Bakke 4fd129ee86
gnu: python-six: Fix test dependencies.
* gnu/packages/python.scm (python-six, python2-six)[native-inputs]: Add
python-py and python-pytest.
2016-12-13 17:04:18 -05:00
Marius Bakke dcb0da7bff
gnu: python-py: Disable tests.
* gnu/packages/python.scm (python-py, python2-py)[arguments]: Set #:tests? #f.
2016-12-13 21:04:31 +01:00
Marius Bakke 673c0390aa
gnu: xproto: Update to 7.0.31.
* gnu/packages/xorg.scm (xproto): Update to 7.0.31.
2016-12-13 20:48:14 +01:00
Marius Bakke 3f1b4bc316
gnu: xf86-input-keyboard: Update to 1.9.0.
* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.9.0.
2016-12-13 20:39:01 +01:00
Marius Bakke 12f3af5f1a
gnu: xf86-video-ati: Update to 7.8.0.
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.8.0.
2016-12-13 20:37:13 +01:00
Marius Bakke 546856a3de
gnu: xf86-input-libinput: Update to 0.23.0.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.23.0.
2016-12-13 20:31:29 +01:00
Tobias Geerinckx-Rice d7f84eab02
gnu: iproute2: Update to 4.9.0.
* gnu/packages/linux.scm (iproute2): Update to 4.9.0.
[home-page]: Point to the latest attempt, and use HTTPS.
2016-12-13 19:32:34 +01:00
Alex Kost bee075e706
gnu: libjpeg-turbo: Fix typo.
This is a followup to commit e90a706e16.

* gnu/packages/image.scm (libjpeg-turbo): Remove extra "\".
2016-12-13 19:56:07 +03:00
Ludovic Courtès 1975ec69e7
gnu: epic5: Fix 'license' field to contain only licenses.
* gnu/packages/irc.scm (epic5)[license]: Call 'license:non-copyleft'.
2016-12-13 17:24:30 +01:00
Efraim Flashner 1d0814670c
gnu: python-pyqt: Update to 5.7.
* gnu/packages/qt.scm (python-pyqt): Update to 5.7.
2016-12-13 15:11:25 +02:00
Efraim Flashner e5a12fba82
gnu: onionshare: Update to 0.9.2 (fixes CVE-2016-5026).
* gnu/packages/tor.scm (onionshare): Update to 0.9.2.
[source]: Remove patch.
[arguments]: Update substitutions for new version.
* gnu/packages/patches/onionshare-fix-install-paths.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-13 13:12:31 +02:00
Ben Woodcroft 991e143d25
gnu: diamond: Update to 0.8.29.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.29.
2016-12-13 20:01:56 +10:00
Ben Woodcroft ced1c496aa
gnu: orfm: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.1.
2016-12-13 20:00:50 +10:00
Efraim Flashner 310248c621
gnu: libsrtp: Fix building on mips.
* gnu/packages/telephony.scm (libsrtp)[arguments]: Add substitution
changing variable name from 'mips' to 'mips_value'. Also substitute
dictionary location in test suite.
2016-12-13 11:15:49 +02:00
Efraim Flashner 6f09178d2a
gnu: libsrtp: Have source use file-name.
* gnu/packages/telephony.scm (libsrtp)[source]: Add file-name field.
2016-12-13 11:15:48 +02:00
Efraim Flashner e90a706e16
gnu: libjpeg-turbo: Fix build on mips.
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add substitution to
set variable type before use.
2016-12-13 11:15:32 +02:00
Marius Bakke 61dd253f8e
gnu: lftp: Update to 4.7.4.
* gnu/packages/ftp.scm (lftp): Update to 4.7.4.
[home-page]: Change to new domain.
[source]: Adjust to new domain. Add mirror.
2016-12-13 09:38:01 +01:00
Marius Bakke d660f7be6d
gnu: python-setuptools: Update to 31.0.0.
* gnu/packages/python.scm (python-setuptools, python2-setuptools): Update to
31.0.0.
[source]: Use 'pypi-uri'.
[license]: Update for bundled libraries.
2016-12-13 09:37:49 +01:00
Marius Bakke ad04bd6b2a
gnu: duplicity: Use 'modify-phases' syntax.
* gnu/packages/backup.scm (duplicity)[arguments]: Use 'modify-phases'.
2016-12-13 09:37:43 +01:00
Tobias Geerinckx-Rice 7843f276d1
gnu: xf86-video-nouveau: Update to 1.0.13.
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.13.
2016-12-13 04:59:22 +01:00
Tobias Geerinckx-Rice 80a612dccf
gnu: xf86-input-synaptics: Update to 1.9.0.
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.0.
2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice f63491a385
gnu: xf86-input-mouse: Update to 1.9.2.
* gnu/packages/xorg.scm (xf86-input-mouse): Update to 1.9.2.
2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice 5de2ec6deb
gnu: xf86-input-joystick: Update to 1.6.3.
* gnu/packages/xorg.scm (xf86-input-joystick): Update to 1.6.3.
2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice 08cf3e4ce5
gnu: xf86-input-evdev: Update to 2.10.4.
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.4.
2016-12-13 04:50:27 +01:00
Tobias Geerinckx-Rice 2f79bbfc01
gnu: nano: Update to 2.7.2.
* gnu/packages/nano.scm (nano): Update to 2.7.2.
2016-12-13 04:30:04 +01:00
Tobias Geerinckx-Rice c82fd97e0b
gnu: libgcrypt: Update to 1.7.4.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.7.4.
2016-12-13 03:46:58 +01:00
Tobias Geerinckx-Rice 20f7a750ed
gnu: gnutls: Update to 3.5.7.
* gnu/packages/tls.scm (gnutls): Update to 3.5.7.
2016-12-13 03:46:57 +01:00
Ludovic Courtès b810a85019
gnu: Default to GCC 5.
This reinstates and adjusts
commit e3d0fcbf7e.

* gnu/packages/patches/gcc-libiberty-printf-decl.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source]: Use it.
[patches]: Add "gcc-arm-bug-71399.patch".
(gcc): Switch to GCC-5.
* gnu/packages/commencement.scm (libstdc++-boot0): New variable.
(gcc-boot0)[inputs]: Add it.
(gcc-toolchain-4.9): Switch to GCC-4.9.
(gcc-toolchain-5): Switch to GCC-FINAL.
* gnu/local.mk (dist_patch_DATA): Add 'gcc-libiberty-printf-decl.patch'.
2016-12-13 00:40:57 +01:00
Marius Bakke 1d0ceb4775
gnu: sqlite: Update to 3.15.2.
* gnu/packages/databases.scm (sqlite): Update to 3.15.2.
2016-12-12 22:54:25 +01:00
Tobias Geerinckx-Rice 68a9d6df5e
gnu: perl-dbix-class-introspectablem2m: Update source tarball URL.
* gnu/packages/perl.scm (perl-dbix-class-introspectablem2m)[source]: Update
tarball URL.
2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice 32fd260076
gnu: cssc: Update to 1.4.0.
* gnu/packages/version-control.scm (cssc): Update to 1.4.0.
[source]: Remove unneeded patches (i.e. all of them).
* gnu/packages/patches/cssc-gets-undeclared.patch: Delete file.
* gnu/packages/patches/cssc-missing-include.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove deleted patches.
2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice bea3cf4b90
gnu: gsl: Update to 2.3.
* gnu/packages/maths.scm (gsl): Update to 2.3.
2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice 469846a7ba
gnu: vim: Update to 8.0.0133.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0133.
2016-12-12 22:08:44 +01:00
Kei Kebreau b43ec33b6d
gnu: denemo: Change default preferences to use the already-present lilypond.
* gnu/packages/music.scm (denemo)[progpagated-inputs]: Move lilypond to ...
[inputs]: ... here.
[phases]: New phase set-lilypond.
2016-12-12 12:16:17 -05:00
Efraim Flashner 987ad88fb6
gnu: calibre: Update to 2.74.0.
* gnu/packages/ebook.scm (calibre): Update to 2.74.0.
2016-12-12 16:14:30 +02:00
Efraim Flashner 0468eddafb
gnu: python-sip: Update to 4.18.1.
* gnu/packages/qt.scm (python-sip): Update to 4.18.1.
2016-12-12 16:14:30 +02:00
Efraim Flashner f9513086c4
gnu: python-pyqt-4: Use 'modify-phases' syntax.
* gnu/packages/qt.scm (python-pyqt-4)[arguments]: Use 'modify-phases'
syntax.
2016-12-12 16:14:30 +02:00
Efraim Flashner a0bc2d45eb
gnu: python-pyqt@5.5: Remove variable.
* gnu/packages/qt.scm (python-pyqt@5.5, python2-pyqt@5.5): Remove them.
2016-12-12 16:14:29 +02:00
Efraim Flashner c5ea912016
gnu: calibre: Update qt dependancies.
* gnu/packages/ebook.scm (calibre)[native-inputs]: Remove qt, add
qtbase.
[inputs]: Remove qt, replace python2-pyqt@5.5 with python2-pyqt.
2016-12-12 16:14:29 +02:00
Efraim Flashner e9adcd81b1
gnu: python-pyqt: Build with more qt modules.
* gnu/packages/qt.scm (python-pyqt)[inputs]: Add qtbase, qtconnectivity,
qtdeclarative, qtlocation, qtmultimedia, qtsensors, qtserialport, qtsvg,
qttools, qtwebchannel, qtwebkit, qtwebsockets, qtx11extras,
qtxmlpatterns.
(python2-pyqt)[inputs]: Same.
(python-pyqt@4)[inputs]: Only use python.
2016-12-12 16:14:24 +02:00
Ben Woodcroft 2df3d147ef
gnu: orfm: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.0.
2016-12-12 20:49:31 +10:00
Ludovic Courtès 92cc9cf180
gnu: guile: Update to 2.0.13.
* gnu/packages/guile.scm (guile-2.0): Update to 2.0.13.
[source](patches): New field.
[replacement]: Remove.
(guile-2.0.13): Remove.
2016-12-12 00:42:32 +01:00
Christopher Baines 23b40c6625
gnu: direnv: Update to 2.10.0.
* gnu/packages/shellutils.scm (direnv): Update to 2.10.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-11 17:58:55 -05:00
Leo Famulari 4a990395d7
Merge branch 'staging' 2016-12-11 15:03:52 -05:00
Danny Milosavljevic 0c6fc4b7e5
gnu: sunxi-tools: Update to 1.4.2.
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-11 14:14:31 -05:00
Marius Bakke 4eb6ed28a3
gnu: python-html5lib: Add dependency on python-webencodings.
* gnu/packages/python.scm (python-html5lib,
python2-html5lib)[propagated-inputs]: Add python-webencodings.
2016-12-11 20:09:26 +01:00
Marius Bakke adbca19e83
gnu: Add python-webencodings.
* gnu/packages/python.scm (python-webencodings, python2-webencodings): New
variables.
2016-12-11 20:09:23 +01:00
Mark H Weaver 81d6fd2457
gnu: linux-libre: Update to 4.8.14.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.14.  Remove patches.
(linux-libre-arm-generic): Remove patches.
2016-12-11 09:51:10 -05:00
Mark H Weaver 762bc71e21
gnu: linux-libre@4.4: Update to 4.4.38.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.38.
Remove patches.
2016-12-11 09:51:08 -05:00
Ricardo Wurmus 0ff55f9d77
gnu: fcgi: Disable parallel building.
* gnu/packages/web.scm (fcgi)[arguments]: Disable parallel building.
2016-12-11 15:18:36 +01:00
Tobias Geerinckx-Rice 1ce6f33b0c
gnu: Add sshoot.
* gnu/packages/vpn.scm (sshoot): New variable.
2016-12-11 11:58:41 +01:00
Tobias Geerinckx-Rice 6c2e82bcb7
gnu: Add python-argcomplete.
* gnu/packages/python.scm (python-argcomplete): New variable.
2016-12-11 11:58:40 +01:00
Tobias Geerinckx-Rice 5c863d57ff
gnu: Add sshuttle.
* gnu/packages/vpn.scm (sshuttle): New variable.
2016-12-11 11:58:40 +01:00
Leo Famulari 5ce09ef18f
gnu: openjpeg-2.1.2: Use a meaningful file-name for the source code.
This is a followup to commit 0e8b7b1c35.

* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Give a meaningful
file-name.
2016-12-11 02:25:16 -05:00
Leo Famulari b245f7589e
gnu: diffoscope: Update to 63.
* gnu/packages/package-management.scm (diffoscope): Update to 63.
[arguments]: Remove obsolete 'disable-failing-test' and 'disable-egg-zipping'
phases. The former was fixed upstream, and the latter is fixed by the new Python
build system.
2016-12-11 02:04:38 -05:00
Leo Famulari 0e8b7b1c35
gnu: openjpeg: Update replacement to 2.1.2 [fixes CVE-2016-{7445,8332}].
* gnu/packages/image.scm (openjpeg/fixed): Replace variable with ...
(openjpeg-2.1.2): ... this.
[patches]: Remove patches inherited from openjpeg.
(openjpeg)[replacement]: Replace with openjpeg-2.1.2.
2016-12-11 02:04:31 -05:00
Mark H Weaver d94691e0c2
Merge branch 'master' into staging 2016-12-10 23:03:57 -05:00
Kei Kebreau edd1652e0a
gnu: Add denemo.
* gnu/packages/music.scm (denemo): New variable.
2016-12-10 19:40:01 -05:00
Tobias Geerinckx-Rice 14f4a46c98
gnu: libpsl: Update to 0.16.0.
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
2016-12-11 00:50:13 +01:00
David Craven e31b75f22f
gnu: Add ocaml-menhir.
* gnu/packages/ocaml.scm (ocaml-menhir): New variable.
2016-12-10 21:47:08 +01:00
David Craven 2694d1dc80
gnu: coq: Update to 8.5pl2.
* gnu/packages/ocaml.scm (coq): Update to 8.5pl2.
  [arguments]: Configure script takes single hyphen arguments.
2016-12-10 21:47:08 +01:00
David Craven 60bc622b1d
gnu: idris: Update to 0.12.3.
* gnu/packages/haskell.scm (idris): Update to 0.12.3.
  [origin]: Remove snippet.
  [inputs]: Add ghc-aeson, ghc-async, ghc-fsnotify, ghc-regex-tdfa,
  ghc-tasty-golden, ghc-tasty-rerun and ghc-terminal-size.
  [arguments]: Disable tests.
2016-12-10 21:47:08 +01:00
David Craven 3ea25176f0
gnu: ghc-trifecta: Update to 1.6.
* gnu/packages/haskell.scm (ghc-trifecta): Update to 1.6.
  [inputs]: Add ghc-doctest and ghc-quickcheck.
  [arguments]: Enable tests.
2016-12-10 21:47:08 +01:00
David Craven 4e05c326ef
gnu: Add ghc-terminal-size.
* gnu/packages/haskell.scm (ghc-terminal-size): New variable.
2016-12-10 21:47:08 +01:00
David Craven 5e6cafe157
gnu: Add ghc-ieee754.
* gnu/packages/haskell.scm (ghc-ieee754): New variable.
2016-12-10 21:47:07 +01:00
David Craven f7e624b639
gnu: Add ghc-tasty-rerun.
* gnu/packages/haskell.scm (ghc-tasty-rerun): New variable.
2016-12-10 21:47:07 +01:00
David Craven b7f96285a5
gnu: Add ghc-fsnotify.
* gnu/packages/haskell.scm (ghc-fsnotify): New variable.
2016-12-10 21:47:07 +01:00
David Craven f63981de14
gnu: Add ghc-hinotify.
* gnu/packages/haskell.scm (ghc-hinotify): New variable.
2016-12-10 21:47:07 +01:00
Mark H Weaver 56c394ee43
gnu: icecat: Add more fixes from upstream mozilla-esr45.
* gnu/packages/gnuzilla.scm (icecat)[sources]: Add more fixes from the
upstream mozilla-esr45 repository.
2016-12-10 15:22:38 -05:00
Efraim Flashner 78636f0b8c
gnu: grep: Update to 2.27.
* gnu/packages/base.scm (grep): Update to 2.27.
2016-12-10 22:10:30 +02:00
Efraim Flashner 67c539e21f
gnu: Remove unused patch.
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-10 21:59:56 +02:00
Efraim Flashner a304b6c362
gnu: openjpeg: Add fixes for CVE-2016-{9850,9851}.
* gnu/packages/image.scm (openjpeg)[replacement]: New field.
(openjpeg/fixed): New variable, patch against CVE-2016-9850,
CVE-2016-9851.
* gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-12-10 21:46:45 +02:00
Efraim Flashner 70c1d5ed05
gnu: ffmpeg@2.8: Update to 2.8.9.
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.9.
2016-12-10 21:00:23 +02:00
Efraim Flashner a6cd85742d
gnu: jasper: Update to 2.0.6.
* gnu/packages/image.scm (jasper): Update to 2.0.6.
2016-12-10 20:59:19 +02:00
Christopher Baines a77f036084
gnu: password-store: Don't run tests in parallel.
* gnu/packages/password-utils.scm (password-store): Don't run tests in
  parallel, as it causes them to hang and the build to timeout.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-10 14:07:32 +01:00
Christopher Baines 619f98fa8f
gnu: password-store: Delete build phase
* gnu/packages/password-utils.scm (password-store): Remove the build
  phase, as it is unused.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-10 14:04:18 +01:00
Marius Bakke fc184fe2de
gnu: openssl-next: Update to 1.1.0c [fixes CVE-{7053,7054,7055}].
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0c.
[arguments]: Duplicate 'configure' to add rpath flag previously handled by
now-defunct 'patch-runpath' phase. Duplicate 'remove-miscellany' phase.
2016-12-10 14:00:05 +01:00
Kei Kebreau fdb552bbd4
gnu: windowmaker: Fix invocation of 'wmsetbg'.
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Add substitution of
40-character limit with a 107-character limit.
2016-12-09 22:10:06 -05:00
Ben Woodcroft a225db5293
gnu: vsearch: Update to 2.3.4.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
2016-12-10 10:45:13 +10:00
Ben Woodcroft 7922ab8fe8
gnu: pardre: Update to 1.1.5-1.
* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source]: Update source hash.
2016-12-10 10:45:12 +10:00
Mark H Weaver 6b2921c3ac
gnu: linux-libre: Add fixes for CVE-2016-8655 et al.
* gnu/packages/linux.scm (linux-libre, linux-libre-arm-generic):
Add patches for CVE-2016-8655 and the vulnerability described in
<http://seclists.org/oss-sec/2016/q4/644>.
2016-12-09 18:36:21 -05:00
Mark H Weaver 1134e99d86
gnu: linux-libre@4.4: Add fixes for CVE-2016-8655 et al.
* gnu/packages/linux.scm (linux-libre-4.4): Add patches for CVE-2016-8655 and
the vulnerability described in <http://seclists.org/oss-sec/2016/q4/644>.
2016-12-09 18:36:03 -05:00
Ludovic Courtès 72c0b68780
gnu: libsoup: Update to 2.56.0.
* gnu/packages/gnome.scm (libsoup): Update to 2.56.0.
2016-12-10 00:10:30 +01:00
Ben Woodcroft fdf3a68d9e
gnu: ruby-sdoc: Update to 0.4.2.
* gnu/packages/ruby.scm (ruby-sdoc): Update to 0.4.2.
[arguments]: Remove 'relax-minitest-requirement' phase, Add 'set-rubylib'
phase.
[native-inputs]: Add ruby-hoe.
2016-12-10 07:51:47 +10:00
Ben Woodcroft 71596c3ce6
gnu: Adjust gemspec modifications for ruby-2.3.2.
* gnu/packages/ruby.scm (ruby-mocha)[arguments]: Adjust 'substitute*' of
gemspec.
(ruby-domain-name)[arguments]: Likewise.
2016-12-10 07:50:16 +10:00
Mark H Weaver 750778abd4
gnu: linux-libre: Update to 4.8.13.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.13.
2016-12-09 15:13:22 -05:00
Mark H Weaver 33d6a2ff9f
gnu: linux-libre@4.4: Update to 4.4.37.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.37.
2016-12-09 15:10:17 -05:00
Paul Garlick f81c6a4932
gnu: gmsh: Update to 2.15.0.
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 19:14:21 +01:00
Marius Bakke dfdc92259b
gnu: libev: Update to 4.23.
* gnu/packages/libevent.scm (libev): Update to 4.23.
2016-12-09 18:23:05 +01:00
Ludovic Courtès f80b4d2ce0
Merge remote-tracking branch 'origin/master' into staging 2016-12-09 18:11:14 +01:00
Ludovic Courtès 13b5f44b47
gnu: libepoxy: Add patch to avoid segfault when GL support is missing.
* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file.
* gnu/packages/gl.scm (libepoxy)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-12-09 18:09:43 +01:00
Ludovic Courtès d99ee3d923
gnu: ruby-sdoc: Really relax minitest version requirement.
* gnu/packages/ruby.scm (ruby-sdoc)[arguments]: Adjust pattern in
'relax-minitest-requirement'.
2016-12-09 15:39:13 +01:00
Hartmut Goebel 43e8824d3c
gnu: python-pyqt: Fix build by explicitly setting the stubsdir.
* gnu/packages.qt.scm (python-pyqt, python2-pyqt)[arguments]: In phase
'configure' pass option --stubsdir.
2016-12-09 13:04:17 +01:00
Hartmut Goebel 931eaeaad9
gnu: python-pyqt-5.5: Use non-inherited "configure" phase.
This allows passing different options for 5.5 than for the main version
(which is currently 5.6).

* gnu/packages.qt.scm (python-pyqt-5.5, python2-pyqt-5.5)[arguments]: Copy
from (python-pyqt)[arguments].
2016-12-09 13:04:17 +01:00
Hartmut Goebel 9fde877856
gnu: python2-pyqt-4: Change package name to python2-pyqt.
* gnu/packages/qt.scm (python2-pyqt-4)[package]: Change "name"
python2-pyqt.
2016-12-09 13:04:17 +01:00
Danny Milosavljevic 444a79b6fe
gnu: Add python-flask-restful-swagger.
* gnu/packages/python.scm (python-flask-restful-swagger,
  python2-flask-restful-swagger): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 11:57:10 +01:00
Marius Bakke fe3b8862cf
gnu: alot: Update to 0.4.
* gnu/packages/mail.scm (alot): Update to 0.4.
[arguments]: Update python3 comment.
2016-12-09 11:47:39 +01:00
Julien Lepiller b1a3c533f3
gnu: php: Update to 7.0.14.
* gnu/packages/php.scm (php): Update to 7.0.14.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 09:58:36 +01:00
Leo Famulari e11fb2b862
gnu: parallel: Update 20161122.
* gnu/packages/parallel.scm (parallel): Update to 20161122.
2016-12-08 23:12:51 -05:00
rennes 1f6a73ee6b
gnu: Add gnome-system-monitor.
* gnu/packages/gnome.scm (gnome-system-monitor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-08 23:42:12 +01:00
ng0 0c69a17efd
gnu: Add epic5.
* gnu/packages/irc.scm (epic5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-12-08 22:36:15 +02:00
Efraim Flashner c32f0e3059
gnu: enlightenment: Update to 0.21.4.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.4.
2016-12-08 21:45:37 +02:00
Efraim Flashner 80a92a0fb5
gnu: efl: Update to 1.18.4.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.4.
2016-12-08 21:45:37 +02:00
Efraim Flashner 256470325b
gnu: tor: Update to 0.2.8.11.
* gnu/packages/tor.scm (tor): Update to 0.2.8.11.
2016-12-08 21:45:33 +02:00
Leo Famulari cb5a32c022
gnu: imagemagick: Update to 6.9.6-7.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-7.
2016-12-08 14:32:02 -05:00
Leo Famulari 57513498de
gnu: tcsh: Fix out of bounds read.
* gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[replacement]: New field.
(tcsh/fixed): New variable.
2016-12-08 13:53:36 -05:00
José Miguel Sánchez García a2c1dceadd
gnu: Add vis.
* gnu/packages/text-editors.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-12-08 15:07:34 +01:00
Marius Bakke a14061aae6
gnu: python-html5lib: Update to 1.0b10 [fixes CVE-2016-{9909,9910}].
* gnu/packages/python.scm (python-html5lib, python2-html5lib): Update to 1.0b10.
2016-12-08 13:55:46 +01:00
Ben Woodcroft 1b7f17ef90
gnu: vsearch: Update to 2.3.3.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.3.
2016-12-08 22:39:10 +10:00
Alex Kost cb72d34348
gnu: libreoffice: Add 'libreoffice' symlink.
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Adjust
'bin-install' phase to make 'libreoffice' symlink along with 'soffice'.

Co-authored-by: ng0 <ng0@libertad.pw>
2016-12-08 12:32:52 +03:00
Alex Kost a9c61335c9
gnu: Update 'geiser' hash and deprecate 'geiser-next'.
* gnu/packages/emacs.scm (geiser)[source]: Update the hash (the release
tarball was updated in place).
(geiser-next): Deprecate.
2016-12-08 12:32:52 +03:00
John Darrington 7b706a4930
gnu: Fix path to /etc/netconfig in libtirpc.
* gnu/packages/onc-rpc.scm (libtirpc) [arguments]: Replace "/etc/netconfig"
with (string-append %output "/etc/netconfig")
2016-12-08 08:30:57 +01:00
Adonay Felipe Nogueira c451474488
gnu: samba: Don't expect configuration files inside the store.
Fixes <http://bugs.gnu.org/24834>.

* gnu/packages/samba.scm (samba)[arguments]: Add --sysconfdir configure flag.
Add 'disable-etc-samba-directory-creation' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-08 00:28:47 +01:00
José Miguel Sánchez García 35cdc267ae
gnu: Add lua-lpeg.
* gnu/packages/lua.scm (lua-lpeg): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 23:20:24 +01:00
José Miguel Sánchez García db913ac431
gnu: Add libtermkey.
* gnu/packages/terminals.scm (libtermkey): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 23:09:49 +01:00
Ludovic Courtès 3593e5d5c5
gnu: cross-base: Move phases to (gnu build cross-toolchain).
* gnu/packages/cross-base.scm (cross-gcc-arguments) <#:phases>: Use
'cross-gcc-build-phases', and move body cross-toolchain.scm.
(cross-gcc): Add #:imported-modules.  Add (gnu build cross-toolchain) to
 #:modules.
* gnu/build/cross-toolchain.scm: New file, with code from
'cross-gcc-arguments'.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-12-07 21:52:26 +01:00
Ludovic Courtès 3009a9e451
gnu: cross-base: Factorize list of cross environment variables.
* gnu/packages/cross-base.scm (cross-libc): Replace literal list of
environment variable names with %GCC-CROSS-INCLUDE-PATHS.
(cross-kernel-headers): Likewise.
2016-12-07 21:52:26 +01:00
Efraim Flashner 8a3ce2c7b0
gnu: ams-lv2: Remove CPU optimization flags on non-Intel hardware.
* gnu/packages/music.scm (ams-lv2)[arguments]: Add phase to remove
Intel specific CPU optimization flags when compiling on non-Intel
hardware.
2016-12-07 21:38:43 +02:00
Danny Milosavljevic bb4b17064d
gnu: python-sqlalchemy-utils: Update to 0.32.11.
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.11.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 18:51:46 +01:00
Danny Milosavljevic 1ed21519f7
gnu: Add python-sadisplay.
* gnu/packages/python.scm (python-sadisplay, python2-sadisplay): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 14:20:46 +01:00
Efraim Flashner 491f291892
gnu: subversion: Update to 1.8.17.
* gnu/packages/version-control.scm (subversion): Update to 1.8.17.
2016-12-07 13:15:06 +02:00
Manolis Ragkousis f13f60cb26
gnu: make-bootstrap: Produce the correct %glibc-bootstrap-tarball for Hurd systems.
* gnu/packages/make-bootstrap.scm (%glibc-bootstrap-tarball): Make it a procedure.
  (%glibc-stripped): Make it a procedure and move the kernel specific part from
  here to ...
* guix/build/make-bootstrap.scm (make-stripped-libc): ... here. New file.
* Makefile.am (MODULES): Add it.
2016-12-07 12:59:02 +02:00
Manolis Ragkousis 1ecb7be8b7
gnu: cross-kernel-headers: Remove propagated-inputs from xhurd-headers.
* gnu/packages/cross-base.scm (xhurd-headers)[propagated-inputs]: Remove them.
2016-12-07 12:56:02 +02:00
Jan Nieuwenhuizen 88da729ff7
gnu: guile-2.0: support mingw.
* gnu/packages/guile.scm (guile-2.0): Support MinGW.
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen ae12d58627
gnu: readline: support mingw.
* gnu/packages/patches/readline-7.0-mingw.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline): Support MinGW.
2016-12-07 10:23:17 +01:00
Mark H Weaver d230cf61f6
gnu: ncurses: support mingw.
* gnu/packages/ncurses.scm (ncurses): Support MinGW.

Co-Authored-By: Jan Nieuwenhuizen <janneke@gnu.org>
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen 7f1c32f0e6
gnu: gmp: build shared library for mingw.
* gnu/packages/multiprecision.scm (gmp)[MINGW]: Use --enable-shared.
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen d788fcd3ba
gnu: libunistring: support mingw: propagate libiconv if needed.
* gnu/packages/libunistring (libunistring): propagated-inputs: add
libiconv-if-needed.  Fixes unicode translation in MinGW.
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen 4dab8c5906
gnu: Add function libiconv-if-needed.
* gnu/packages/base.scm (libiconv-if-needed): New function.
2016-12-07 10:23:16 +01:00
Jan Nieuwenhuizen cba36e6482
gnu: cross-base: Add i686-w64-mingw32 target.
* guix/utils.scm (mingw-target?): New function.
* gnu/packages/cross-base.scm (cross-gcc-snippet): New procedure
(cross-gcc): Use it.
(cross-gcc-arguments, cross-gcc-patches, cross-gcc): Support MinGW.
(native-libc, cross-newlib?): New functions.
(cross-libc): Use cross-newlib? to support MinGW.
(%gcc-include-paths, %gcc-cross-include-paths): New variables.
2016-12-07 10:23:16 +01:00
Jan Nieuwenhuizen cf0ef075c4
gnu: Add mingw-w64.
* gnu/packages/patches/gcc-4.9.3-mingw-gthr-default.patch,
gnu/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch,
gnu/packages/mingw.scm: New files.
* gnu/local.mk (dist_patch_DATA): Add the patches.
(GNU_SYSTEM_MODULES): Add mingw.scm.
2016-12-07 10:23:16 +01:00
Ricardo Wurmus 4908ae4847
gnu: zynaddsubfx: Update to 3.0.1.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.1.
2016-12-07 10:13:04 +01:00
Efraim Flashner 4ff71cac67
gnu: libx264: Update to 20161205-2245.
* gnu/packages/video.scm (libx264): Update to 20161205-2245.
[source]: Use https.
[home-page]: Same.
2016-12-07 07:33:23 +02:00
Leo Famulari 425fabfc9a
gnu: radicale: Skip the test suite.
* gnu/packages/dav.scm (radicale)[arguments]: Skip the tests.
2016-12-06 20:46:18 -05:00
Efraim Flashner 37479058a1
gnu: ffmpeg: Update to 3.2.2.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.2.
2016-12-06 20:48:56 +02:00
Ricardo Wurmus 61c71171a2
gnu: emacs-expand-region: Update to 0.11.0.
* gnu/packages/emacs.scm (emacs-expand-region): Update to 0.11.0.
2016-12-06 16:14:53 +01:00
Efraim Flashner 1ebe49f192
gnu: httpd: Add fix for CVE-2016-8740.
* gnu/packages/web.scm (httpd)[source]: Add patch for CVE-2016-8740.
* gnu/packages/patches/httpd-CVE-2016-8740.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-12-06 15:39:25 +02:00
Hartmut Goebel 3a735ecf0e
gnu: python2-notebook: Fix build.
* gnu/packages/python.scm (python2-notebook)[properties]: Add
python2-variant.
(python2-notebook)[native-packages] add python2-mock. [arguments] Add
phase "disable-test-case" for disabling a failing test. immediately
2016-12-06 11:30:15 +01:00
Hartmut Goebel c4abbac349
gnu: python-ipython-genutils: Update description.
* gnu/packages/python.scm (python-ipython-genutils)[description]: Add
deprecation note and TODO comment.
2016-12-06 11:29:37 +01:00
Hartmut Goebel 4dbc8ec483
gnu: python-ipython: Update to 4.0.3
* gnu/packages/python.scm (python-ipython, python2-ipython): Update to
version 4.0.3.
2016-12-06 11:29:35 +01:00
Ricardo Wurmus 5a66e25ce6
gnu: Add seq24.
* gnu/packages/music.scm (seq24): New variable.
* gnu/packages/patches/seq24-rename-mutex.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
2016-12-06 10:15:49 +01:00
Efraim Flashner 24420005ec
gnu: links: Update to 2.14.
* gnu/packages/links.scm (links): Update to 2.14.
2016-12-06 10:11:27 +02:00
Jan Nieuwenhuizen 590abe010b
gnu: Add openh264.
* gnu/packages/video.scm (openh264): New variable.
2016-12-06 10:11:18 +02:00
Ludovic Courtès 40f2d1bc3b
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 8d125c.
2016-12-06 01:24:06 +01:00
Ludovic Courtès 8243951ef1
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to e11c42f.
2016-12-06 00:24:24 +01:00
Leo Famulari 4bd391f557
gnu: i3-wm: Update to 4.13.
* gnu/packages/wm.scm (i3-wm): Update to 4.13.
[arguments]: Pass '-std=c11' to #:make-flags. Provide path to XML_CATALOG_FILES.
Pass '--disable-builddir' to #:configure-flags. Re-enable the 'configure' phase
to adjust to new Autotools build system.
[inputs]: Add xcb-util-xrm.
[native-inputs]: Add docbook-xsl.
2016-12-05 17:09:15 -05:00
Leo Famulari 81f4f1051f
gnu: xcb-util-cursor: Propagate dependencies from 'xcb-cursor.pc'.
* gnu/packages/xorg.scm (xcb-util-cursor)[inputs]: Move xcb-util-renderutil and
xcb-util-image to ...
[propagated-inputs]: ... here.
2016-12-05 17:09:15 -05:00
Leo Famulari 6e02766d43
gnu: ruby-2.2, ruby-2.1, ruby-1.8: Don't replace with ruby-2.3.3.
* gnu/packages/ruby.scm (ruby-2.2, ruby-2.1, ruby-1.8)[replacement]: New field.
2016-12-05 16:41:23 -05:00
Ludovic Courtès 3a6a563228
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 9328eaf.
2016-12-05 21:09:02 +01:00
Tobias Geerinckx-Rice c0cc805e3f
gnu: fuse-exfat: Update to 1.2.5.
* gnu/packages/linux.scm (fuse-exfat): Update to 1.2.5.
[native-inputs]: Remove scons build system which is no longer used.
[arguments]: Remove.
[home-page]: Replace dead Google Code home page.
2016-12-05 20:33:31 +01:00
Tobias Geerinckx-Rice 694f485b47
gnu: exfat-utils: Update to 1.2.5.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.5.
2016-12-05 20:33:31 +01:00
Tobias Geerinckx-Rice 8975d00cd6
gnu: Add mktorrent.
* gnu/packages/bittorrent.scm (mktorrent): New variable.
2016-12-05 20:33:30 +01:00
Leo Famulari 8f35c03061
gnu: python-flask: Propagate python-click.
* gnu/packages/python.scm (python-flask, python2-flask)[native-inputs]: Move
python-click to ...
[propagated-inputs]: ... here.
2016-12-04 19:27:47 -05:00
Ludovic Courtès 95088559a9
gnu: shepherd: Update to 0.3.2.
* gnu/packages/admin.scm (shepherd): Update to 0.3.2.
[properties]: New field.
2016-12-04 22:32:47 +01:00
Marius Bakke 222222be63
gnu: vim: Update to 8.0.0124.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0124.
2016-12-04 22:25:30 +01:00
Tobias Geerinckx-Rice c8608faf14
gnu: dovecot: Update to 2.2.27.
* gnu/packages/mail.scm (dovecot): Update to 2.2.27.
[source, home-page]: Use HTTPS.
2016-12-04 22:15:02 +01:00
Tobias Geerinckx-Rice 9865a15057
gnu: vim: Update to 8.0.0118.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0118.
2016-12-04 22:15:02 +01:00
Ricardo Wurmus b3410b44b2
gnu: Add qmidiarp.
* gnu/packages/music.scm (qmidiarp): New variable.
2016-12-04 20:52:51 +01:00
Christopher Andersson 4cf9f57b0e
gnu: Add Swedish Aspell dictionary.
* gnu/packages/aspell.scm (aspell-dict-sv): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-04 19:05:06 +01:00
Marius Bakke 76bbce6af2
gnu: mupdf: Update to 1.10a.
* gnu/packages/patches/mupdf-CVE-2016-6265.patch: Delete file.
* gnu/packages/patches/mupdf-CVE-2016-6525.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7504.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7505.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7506.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7563.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7564.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-9017.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-9136.patch: Likewise.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Adjust to 1.10a.
* gnu/local.mk (dist_patch_DATA): Remove deleted patches.
* gnu/packages/pdf.scm (mupdf): Update to 1.10a.
[source]: Remove patches.
2016-12-04 17:41:54 +01:00
Marius Bakke a351fc8369
Merge branch 'master' into staging 2016-12-04 17:41:36 +01:00
Alex Kost d1a5b20081
gnu: Move image viewers to (gnu packages image-viewers).
* gnu/packages/feh.scm (feh): Remove file.  Move package to...
* gnu/packages/geeqie.scm (geeqie): Likewise...
* gnu/packages/sxiv.scm (sxiv): Likewise...
* gnu/packages/image-viewers.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove files.
2016-12-04 17:42:05 +03:00
Alex Kost 023f0fb06e
gnu: exiv2: Move to (gnu packages image).
* gnu/packages/geeqie.scm (exiv2): Move to...
* gnu/packages/image.scm: ... here.
* gnu/packages/gnome.scm: Adjust the used modules.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gps.scm: Likewise.
2016-12-04 17:39:48 +03:00
Alex Kost c3a10d30d1
gnu: emms: Update to 4.2.
* gnu/packages/emacs.scm (emms): Update to 4.2.
[arguments]: EMMS installs "emms-print-metadata" now but assumes that
BINDIR exists, so do not install it manually in 'post-install' phase,
and make "/bin" directory in 'pre-install' phase.
2016-12-04 17:39:48 +03:00
Alex Kost c44ec4a8b4
gnu: emacs-with-editor: Update to 2.5.6.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.6.
2016-12-04 17:39:48 +03:00
Alex Kost 4e0d9fce5a
gnu: emacs-hl-todo: Update to 1.7.4.
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.7.4.
2016-12-04 17:39:47 +03:00
Ricardo Wurmus 951581a2d6
gnu: Add ingen.
* gnu/packages/music.scm (ingen): New variable.
2016-12-04 11:24:24 +01:00
Ricardo Wurmus f91d0d08dd
gnu: Add raul-devel.
* gnu/packages/audio.scm (raul-devel): New variable.
2016-12-04 11:17:46 +01:00
Ricardo Wurmus a9276c12ba
gnu: Add ganv-devel.
* gnu/packages/gtk.scm (ganv-devel): New variable.
2016-12-04 11:17:45 +01:00
Ricardo Wurmus 849c3d03f0
gnu: Add ams-lv2.
* gnu/packages/music.scm (ams-lv2): New variable.
2016-12-04 10:16:37 +01:00
Ricardo Wurmus 85f4863f3b
gnu: lvtk: Build UI library.
* gnu/packages/audio.scm (lvtk)[inputs]: Add gtkmm-2.
[arguments]: Pass "-std=c++11" flag.
2016-12-04 10:16:37 +01:00
Efraim Flashner 8a610eb605
gnu: Fix header in (gnu packages golang).
* gnu/packages/golang.scm: Replace header line declaring this file as
part of GNU Guix.
2016-12-04 08:50:30 +02:00
Efraim Flashner 8c15851717
gnu: Add econnman.
* gnu/packages/connman.scm (econnman): New variable.
2016-12-04 08:39:49 +02:00
Efraim Flashner 22fda787f6
gnu: Add lekha.
* gnu/packages/enlightenment.scm (lekha): New variable.
2016-12-04 08:39:49 +02:00
Efraim Flashner cf3504c69c
gnu: Add qsyncthingtray.
* gnu/packages/sync.scm (qsyncthingtray): New variable.
2016-12-04 08:39:48 +02:00
Efraim Flashner 760d6066f7
gnu: Rename owncloud.scm to sync.scm.
* gnu/packages/owncloud.scm: Rename to ...
* gnu/packages/sync.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2016-12-04 08:39:48 +02:00
Efraim Flashner 7526edb9d5
gnu: Add rkflashtool.
* gnu/packages/flashing-tools.scm (rkflashtool): New variable.
2016-12-04 08:39:48 +02:00
Efraim Flashner c7ad32d94a
gnu: uget: Add missing input.
* gnu/packages/bittorrent.scm (uget)[native-inputs]: Add intltool.
2016-12-04 08:39:48 +02:00
Efraim Flashner 12ed023fb7
gnu: tor: Update to 0.2.8.10.
* gnu/packages/tor.scm (tor): Update to 0.2.8.10.
2016-12-04 08:39:48 +02:00
Leo Famulari 4b569a4ff5
gnu: acme-client: Update to 0.1.15.
* gnu/packages/tls.scm (acme-client): Update to 0.1.15.
[native-inputs]: Add pkg-config.
2016-12-03 23:28:22 -05:00
Leo Famulari b172196976
gnu: taglib: Update to 1.10.
* gnu/packages/mp3.scm (taglib): Update to 1.10.
2016-12-03 20:52:00 -05:00
Ben Woodcroft e990c81d38
gnu: aragorn: Update to 1.2.38.
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.38.
2016-12-04 10:51:54 +10:00
Ricardo Wurmus 57b94e9d8d
gnu: Add highlight.
* gnu/packages/pretty-print.scm (highlight): New variable.
2016-12-03 23:26:16 +01:00
Ricardo Wurmus 3bec8a016f
gnu: git: Fix gitweb.
* gnu/packages/version-control.scm (git)[inputs]: Add perl-cgi.
[arguments]: Wrap "gitweb.cgi" with PERL5LIB.
2016-12-03 20:11:37 +01:00
Thomas Danckaert aa8c0ada2e
gnu: Add grantlee.
* gnu/packages/qt.scm (grantlee): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-03 18:55:01 +01:00
Thomas Danckaert f447dbc796
gnu: Add libksysguard.
* gnu/packages/kde.scm (libksysguard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-03 18:55:01 +01:00
Efraim Flashner d54c0bfde4
gnu: libunistring: Update to 0.9.7.
* gnu/packages/libunistring.scm (libunistring): Update to 0.9.7.
[home-page]: Use https.
[license]: License has changed to dual lgpl3+ gpl2.
2016-12-03 19:35:27 +02:00
Mark H Weaver 5bdec7d634
gnu: icecat: Update to 45.5.1-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 45.5.1-gnu1.
[source]: Remove temporary URI for 45.3 beta.  Fix URI computation.  Remove
outdated patches.  Add more cherry-picked bug fixes from upstream
mozilla-esr45.  Use 'list' instead of quasiquote in 'patches' field.
2016-12-03 12:29:53 -05:00
Ricardo Wurmus 9bad404355
gnu: Add fcgiwrap.
* gnu/packages/web.scm (fcgiwrap): New variable.
2016-12-03 17:06:51 +01:00
Ricardo Wurmus ab519cfa3d
gnu: Add fcgi.
* gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch: New file.
* gnu/packages/patches/fcgi-2.4.0-poll.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
* gnu/packages/web.scm (fcgi): New variable.
2016-12-03 17:06:47 +01:00
Efraim Flashner bec5022ffe
gnu: coreutils: Update to 8.26.
* gnu/packages/base.scm (coreutils): Update to 8.26.
2016-12-03 17:30:33 +02:00
Mark H Weaver e9913f8271
gnu: linux-libre: Update to 4.8.12.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.12.
2016-12-03 10:20:59 -05:00
Mark H Weaver bc6d461249
gnu: linux-libre@4.4: Update to 4.4.36.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.36.
2016-12-03 10:20:00 -05:00
Mark H Weaver 80a359f293
gnu: linux-libre@4.1: Update to 4.1.36.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.36.
2016-12-03 10:19:08 -05:00
Ludovic Courtès 020434d497
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 463fb7d.
2016-12-03 12:05:32 +01:00
Leo Famulari a6c4790567
gnu: python-cryptography: Update to 1.6.
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
to 1.6.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.6.
2016-12-03 02:39:09 -05:00
David Craven 83dcfa72d4
gnu: flex: Update to 2.6.2.
* gnu/packages/flex.scm (flex): Update to 2.6.2.
  [native-inputs]: Add help2man.
  [origin]: Update uri to github. Remove CVE-2016-6354 patch.
  (flex-2.6.1): Remove variable.
* gnu/packages/patches/flex-CVE-2016-6354.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Update.
* gnu/packages/kde-frameworks.scm (solid, kservice)[native-inputs]: Use
  flex.
2016-12-02 21:28:05 +01:00
Leo Famulari 80b63e670e
gnu: tzdata: Update to 2016j.
* gnu/packages/base.scm (tzdata): Update to 2016j.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-12-02 13:16:35 -05:00
Hartmut Goebel 447b9473cb
gnu: dblatex: Update comment.
* gnu/packages/docbook.scm (dblatex)[arguments]: Detail comment about why
the use of setuptools needs to be disabled.
2016-12-02 18:07:36 +01:00
Hartmut Goebel b0aa6ede25
gnu: python-numpy: Fix inputs.
This fixes 2efabc5589, where some inputs
have been changed to propagated-inputs, but the propagated-inputs are
still extended from inputs and the inputs are not extended at all.

* gnu/packages/python.scm (python-numpy, python2-numpy)[inputs]:
Extend from python-numpy-bootstrap's package-inputs. [propagated-inputs]:
Extend from python-numpy-bootstrap's package-propagated-inputs.
2016-12-02 18:07:36 +01:00
Hartmut Goebel 77a6932adf
gnu: python2-ipython: Fix inputs.
This fixes e62600feb6, where the inputs
have been changed to native-inputs, but still extended from inputs.

* gnu/packages/python.scm (python2-ipython)[native-inputs]: Extend
from python-ipython's package-native-inputs.
2016-12-02 18:07:36 +01:00
Hartmut Goebel fe4a8da445
gnu: python-numpydoc: Correct inputs.
This does what 213d1745c6 was
supposed to do.

* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
Change first of the duplicate [native-inputs] definitions to
[propagated-inputs].
2016-12-02 18:07:36 +01:00
Hartmut Goebel e89aceab63
gnu: calibre: Do not use python setuptools for building.
* gnu/packages/ebook.scm (calibre)[arguments]: Set #:use-setuptools?
to false.
2016-12-02 18:07:36 +01:00
Marius Bakke d24727c019
gnu: Add dnscrypt-proxy.
* gnu/packages/dns.scm (dnscrypt-proxy): New variable.
2016-12-02 16:58:58 +01:00
Marius Bakke afe62a8bfb
gnu: Add dnscrypt-wrapper.
* gnu/packages/dns.scm (dnscrypt-wrapper): New variable.
2016-12-02 16:58:31 +01:00
Marius Bakke 5834a405ea
gnu: virt-manager: Do not use python setuptools for building.
* gnu/packages/qemu.scm (virt-manager)[arguments]: Set #use-setuptools? to #f.
2016-12-02 13:27:09 +01:00
Marius Bakke a189ac715d
gnu: bluez: Update to 5.43.
* gnu/packages/linux.scm (bluez): Update to 5.43.
2016-12-02 13:08:11 +01:00
Marius Bakke 17f2b485b1
gnu: mesa: Update to 13.0.2.
* gnu/packages/gl.scm (mesa): Update to 13.0.2.
[inputs]: Remove eudev.
[native-inputs]: Move 'mesa-wayland-egl-symbols-check-mips.patch' to ...
[source]: ... here.
[arguments]: Don't apply patch. Remove udev substitution.
2016-12-02 12:16:15 +01:00
Marius Bakke 2028be238b
gnu: dblatex: Update to 0.3.9.
* gnu/packages/docbook.scm (dblatex): Update to 0.3.9.
2016-12-02 12:01:42 +01:00
Marius Bakke 000c5a1163
gnu: libsigc++: Update to 2.10.0.
* gnu/packages/glib.scm (libsigc++): Update to 2.10.0.
2016-12-02 11:40:41 +01:00
Leo Famulari cb8edaac35
gnu: go-1.7: Update to 1.7.4 [security fixes].
* gnu/packages/golang.scm (go-1.7): Update to 1.7.4.
2016-12-02 03:52:06 -05:00
Eric Bavier 786b66ef75
gnu: vtk: Build with more system libraries.
* gnu/packages/vtk.scm (vtk)[inputs]: Add expat, freetype, hdf5, jpeg,
png, tiff, jsoncpp, libogg, libtheora, and zlib.
[arguments]: Use #:build-type keyword.  Add cmake flags for system
libraries.
2016-12-01 23:50:17 -06:00
Eric Bavier 0e988a8483
gnu: vtk: Upgrade to 7.1.0.
* gnu/packages/vtk.scm (vtk): Upgrade to 7.1.0.
[source]: Remove patches.  Use version-major+minor.
* gnu/packages/patches/vtk-mesa-10.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01 23:50:17 -06:00
Eric Bavier 996f5ece8c
gnu: jsoncpp: Build shared libraries.
* gnu/packages/serialization.scm (jsoncpp)[arguments]: New field.
2016-12-01 23:50:17 -06:00
Eric Bavier a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1.
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this.  Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
2016-12-01 23:50:09 -06:00
Efraim Flashner b45baef156
gnu: offlineimap: Update to 7.0.12.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.12.
2016-12-02 07:41:03 +02:00
Marius Bakke 3cc0342b45
gnu: dblatex: Do not use python setuptools for building.
* gnu/packages/docbook.scm (dblatex)[arguments]: Set #:use-setuptools?
to false.
2016-12-01 23:43:37 +01:00
Tomáš Čech 4b67098d9a
gnu: Add uget.
* gnu/packages/bittorrent.scm (uget): New variable.
2016-12-01 21:05:20 +01:00
David Thompson 02ecdeaa02
gnu: ardour: Update to 5.5.
* gnu/packages/audio.scm (ardour): Update to 5.5.
2016-12-01 13:22:24 -05:00
Efraim Flashner 329e432d60
gnu: python-gst: Update to 1.10.2.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.2.
2016-12-01 12:56:23 +02:00
Efraim Flashner 68c2ab8c22
gnu: gst-libav: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.2.
2016-12-01 12:55:45 +02:00
Efraim Flashner acc4d15c0d
gnu: gst-plugins-ugly: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.2.
2016-12-01 12:55:09 +02:00
Efraim Flashner 3103a71f65
gnu: gst-plugins-bad: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.2.
2016-12-01 12:54:19 +02:00
Efraim Flashner 1742132fb1
gnu: gst-plugins-good: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.2.
[source]: Remove patches.
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-01 12:53:30 +02:00
Efraim Flashner 2f0b72af50
gnu: gst-plugins-base: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.2.
2016-12-01 12:50:30 +02:00
Efraim Flashner a8ce5851ce
gnu: gstreamer: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.2.
2016-12-01 12:49:32 +02:00
Efraim Flashner d0b9c34fb3
gnu: perl-catalyst-action-rest: Change to new uri.
This is a followup to abafd66d04.

* gnu/packages/web.scm (perl-catalyst-action-rest)[source]: Update to
new source uri.
2016-12-01 12:44:44 +02:00
Efraim Flashner 9469275790
gnu: perl-catalyst-view-tt: Change source uri.
This is a followup to 776ca1cb22.

* gnu/packages/web.scm (perl-catalyst-view-tt)[source]: Change to new
source uri.
2016-12-01 12:44:44 +02:00
Efraim Flashner 08af1a420a
gnu: perl-http-server-simple: Change source uri.
This is a followup to 5b3646f100.

* gnu/packages/web.scm (perl-http-server-simple)[source]: Update to new
source uri.
2016-12-01 12:44:43 +02:00
Ricardo Wurmus 084f8e0435
gnu: perl-http-message: Update URLs.
* gnu/packages/web.scm (perl-http-message)[source]: Update URL.
[home-page]: Likewise.
2016-12-01 11:07:13 +01:00
Efraim Flashner 8e9badce00
gnu: nasm: Update to 2.12.02.
* gnu/packages/assembly.scm (nasm): Update to 2.12.02.
2016-12-01 10:50:46 +02:00
Efraim Flashner 161fb9be8e
gnu: nasm: Switch patch to phase.
* gnu/packages/assembly.scm (nasm)[source]: Remove patch.
[arguments]: Disable ps and pdf doc outputs in new phase.
* gnu/packages/patches/nasm-no-ps-pdf.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01 10:47:29 +02:00
Efraim Flashner 4181c9393d
gnu: nasm: Allow building on all systems.
* gnu/packages/assembly.scm (nasm)[supported-systems]: Remove field.
2016-12-01 09:46:56 +02:00
Mark H Weaver 9689e71d2f
gnu: icecat: Add fixes for CVE-2016-9079 and other bugs.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
CVE-2016-9079 and other selected fixes from the upstream mozilla-esr45
repository.
2016-11-30 20:51:05 -05:00
Mark H Weaver a9427ce556
gnu: linux-libre: Update to 4.8.11.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.11.
2016-11-30 20:24:07 -05:00
Mark H Weaver 7d9df7ca22
gnu: linux-libre@4.4: Update to 4.4.35.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.35.
2016-11-30 20:23:11 -05:00
Tobias Geerinckx-Rice e0593466a1
gnu: btrfs-progs: Update to 4.8.5.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.5.
2016-12-01 01:42:30 +01:00
Ludovic Courtès d30e578a00
gnu: Add Nagios.
* gnu/packages/monitoring.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-30 23:31:03 +01:00
Efraim Flashner ee264bbf90
gnu: perl-http-tiny: Update to 0.070.
* gnu/packages/web.scm (perl-http-tiny): Update to 0.070.
[propagated-inputs]: Add perl-mozilla-ca.
2016-11-30 21:45:18 +02:00
Efraim Flashner 5b3646f100
gnu: perl-http-server-simple: Update to 0.51.
* gnu/packages/web.scm (perl-http-server-simple): Update to 0.51.
2016-11-30 21:39:51 +02:00
Efraim Flashner a8a7227b7d
gnu: perl-http-message: Update to 6.11.
* gnu/packages/web.scm (perl-http-message): Update to 6.11.
[propagated-inputs]: Add perl-encode-locale.
2016-11-30 21:37:10 +02:00
Efraim Flashner 1ade054c2e
gnu: perl-http-cookiejar: Update to 0.008.
* gnu/packages/web.scm (perl-http-cookiejar): Update to 0.008.
[native-inputs]: Add perl-uri.
2016-11-30 21:33:05 +02:00
Efraim Flashner fb332b15aa
gnu: perl-libwww: Update to 6.15.
* gnu/packages/web.scm (perl-libwww): Update to 6.15.
[propagated-inputs]: Add perl-http-date, perl-http-message, perl-uri.
2016-11-30 21:26:50 +02:00
Efraim Flashner 1bb8ca409a
gnu: perl-http-body: Update to 1.22.
* gnu/packages/web.scm (perl-http-body): Update to 1.22.
2016-11-30 21:26:50 +02:00
Efraim Flashner 3700b27dc6
gnu: perl-html-parser: Update to 3.72.
* gnu/packages/web.scm (perl-html-parser): Update to 3.72.
[inputs]: Add perl-http-message.
2016-11-30 21:26:49 +02:00
Efraim Flashner 97c0cfdc3f
gnu: perl-finance-quote: Update to 1.38.
* gnu/packages/web.scm (perl-finance-quote): Update to 1.38.
2016-11-30 21:26:49 +02:00
Efraim Flashner 85b9c18b1a
gnu: perl-encode-locale: Update to 1.05.
* gnu/packages/web.scm (perl-encode-locale): Update to 1.05.
2016-11-30 21:26:48 +02:00
Efraim Flashner caa0194434
gnu: perl-cgi: Update to 4.35.
* gnu/packages/web.scm (perl-cgi): Update to 4.35.
2016-11-30 21:26:48 +02:00
Efraim Flashner 776ca1cb22
gnu: perl-catalyst-view-tt: Update to 0.44.
* gnu/packages/web.scm (perl-catalyst-view-tt): Update to 0.44.
[propagated-inputs]: Add perl-data-dump.
2016-11-30 21:26:48 +02:00
Efraim Flashner 0018eb57c9
gnu: perl-catalyst-view-json: Update to 0.36.
* gnu/packages/web.scm (perl-catalyst-view-json): Update to 0.36.
2016-11-30 21:26:48 +02:00
Efraim Flashner e8b20020ba
gnu: perl-catalyst-plugin-session: Update to 0.40.
* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.40.
[propagated-inputs]: Add perl-mro-compat.
2016-11-30 21:26:47 +02:00
Efraim Flashner 9fc4145211
gnu: perl-catalyst-plugin-accesslog: Update to 1.10.
* gnu/packages/web.scm (perl-catalyst-plugin-accesslog): Update to 1.10.
[arguments]: Enable tests.
2016-11-30 21:26:47 +02:00
Efraim Flashner abafd66d04
gnu: perl-catalyst-action-rest: Update to 1.20.
* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.20.
[propagated-inputs]: Add perl-config-general, perl-cpanel-json-xs,
perl-xml-simple.
2016-11-30 21:26:47 +02:00
Efraim Flashner faf806dba9
gnu: perl-apache-logformat-compiler: Update to 0.33.
* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.33.
2016-11-30 21:26:47 +02:00
Efraim Flashner 1b49fc8fc3
gnu: perl-email-sender: Update to 1.300028.
* gnu/packages/mail.scm (perl-email-sender): Update to 1.300028.
2016-11-30 21:26:46 +02:00
Efraim Flashner 47b4cedf5d
gnu: perl-xml-xpath: Update to 1.40.
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.40.
2016-11-30 21:26:46 +02:00
Efraim Flashner 28a3b6b42c
gnu: perl-xml-compile-wsdl11: Update to 3.05.
* gnu/packages/xml.scm (perl-xml-compile-wsdl11): Update to 3.05.
2016-11-30 21:26:46 +02:00
Efraim Flashner 0c3e27a4f4
gnu: perl-xml-compile-soap: Update to 3.20.
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.20.
2016-11-30 21:26:45 +02:00
Efraim Flashner 6b9d3f5539
gnu: perl-xml-compile-cache: Update to 1.05.
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.05.
2016-11-30 21:26:45 +02:00
Efraim Flashner 18c832b02e
gnu: perl-xml-compile: Update to 1.54.
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.54.
2016-11-30 21:26:45 +02:00
Efraim Flashner 4e5465f255
gnu: perl-xml-dom: Update to 1.46.
* gnu/packages/xml.scm (perl-xml-dom): Update to 1.46.
[propagated-inputs]: Add perl-xml-parser.
2016-11-30 21:26:45 +02:00
Efraim Flashner f3aa34cc5a
gnu: perl-xml-libxml-simple: Update to 0.97.
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.97.
2016-11-30 21:26:44 +02:00
Efraim Flashner ffbc7d6553
gnu: perl-graph-readwrite: Update to 2.09.
* gnu/packages/xml.scm (perl-graph-readwrite): Update to 2.09.
2016-11-30 21:26:44 +02:00
Efraim Flashner 467d4c85c3
gnu: perl-dbd-sqlite: Update to 1.52.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.52.
2016-11-30 21:26:44 +02:00
Efraim Flashner ebd2dbbfc1
gnu: perl-dbix-class-schema-loader: Update to 0.07046.
* gnu/packages/databases.scm (perl-dbix-class-schema-loader):
Update to 0.07046.
2016-11-30 21:26:43 +02:00
Efraim Flashner 7a462b8023
gnu: perl-dbix-class-introspectablem2m: Update to 0.001002.
* gnu/packages/databases.scm (perl-dbix-class-introspectablem2m):
Update to 0.001002.
2016-11-30 21:26:43 +02:00
Efraim Flashner 180cb81b4c
gnu: perl-dbix-class-cursor-cached: Update to 1.001004.
* gnu/packages/databases.scm (perl-dbix-class-cursor-cached):
Update to 1.001004.
2016-11-30 21:26:43 +02:00
Efraim Flashner 5d78d746af
gnu: perl-dbix-class: Update to 0.082840.
* gnu/packages/databases.scm (perl-dbix-class): Update to 0.082840.
2016-11-30 21:26:43 +02:00
Efraim Flashner f363d5d854
gnu: perl-email-simple: Update to 2.211.
* gnu/packages/mail.scm (perl-email-simple): Update to 2.211.
2016-11-30 21:26:42 +02:00
Efraim Flashner e4146b0485
gnu: perl-namespace-autoclean: Update to 0.28.
* gnu/packages/perl.scm (perl-namespace-autoclean): Update to 0.28.
2016-11-30 21:26:42 +02:00
Efraim Flashner 199bbbe1ed
gnu: perl-class-method-modifiers: Update to 2.12.
* gnu/packages/perl.scm (perl-class-method-modifiers): Update to 2.12.
2016-11-30 21:26:42 +02:00
Efraim Flashner a883ba0246
gnu: perl-email-mime-contenttype: Update to 1.018.
* gnu/packages/mail.scm (perl-email-mime-contenttype): Update to 1.018.
2016-11-30 21:26:41 +02:00
Efraim Flashner b4522b9855
gnu: perl-email-mime: Update to 1.937.
* gnu/packages/mail.scm (perl-email-mime): Update to 1.937.
2016-11-30 21:26:41 +02:00
Efraim Flashner 1fb37ef06e
gnu: perl-email-messageid: Update to 1.406.
* gnu/packages/mail.scm (perl-email-messageid): Update to 1.406.
2016-11-30 21:26:41 +02:00
Efraim Flashner 151bba2b3d
gnu: perl-email-address: Update to 1.908.
* gnu/packages/mail.scm (perl-email-address): Update to 1.908.
2016-11-30 21:26:41 +02:00
Marius Bakke bc118f1a03
gnu: cairo: Eliminate graft.
* gnu/packages/gtk.scm (cairo)[replacement]: Remove field.
[source]: Add patch from 'cairo/fixed'.
(cairo-xcb)[source]: Inherit from cairo.
[replacement]: Remove field.
(cairo/fixed): Remove variable.
* gnu/packages/pdf.scm (poppler)[inputs]: Remove cairo replacement.
2016-11-30 18:31:37 +01:00
Marius Bakke 8b6aee5f82
gnu: dbus: Update to 1.10.14.
* gnu/packages/glib.scm (dbus): Update to 1.10.14.
2016-11-30 18:26:15 +01:00
Marius Bakke 86cf191426
gnu: dbus: Eliminate graft.
* gnu/packages/glib.scm (dbus)[replacement]: Remove field.
[version]: Update to 1.10.12.
[source]: Update hash.
(dbus-1.10.12): Remove variable.
2016-11-30 18:26:05 +01:00
Marius Bakke 35bbe88b3c
gnu: pixman: Eliminate graft.
* gnu/packages/xdisorg.scm (pixman)[replacement]: Remove field.
[source]: Add patch from 'pixman/fixed'.
(pixman/fixed): Remove variable.
2016-11-30 18:25:57 +01:00
Marius Bakke 8a7cbc882a
Merge branch 'master' into staging 2016-11-30 18:24:32 +01:00
Ludovic Courtès 72f0c5ea3c
gnu: iw: Update to 4.9.
* gnu/packages/linux.scm (iw): Update to 4.9.
2016-11-30 17:35:21 +01:00
Ludovic Courtès 873c469e74
gnu: pciutils: Update to 3.5.2.
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.2.
2016-11-30 17:35:21 +01:00
Leo Famulari dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
2016-11-30 11:16:18 -05:00
Ricardo Wurmus 7edd195ac8
gnu: gcj: Conditionally apply patch for armhf.
* gnu/packages/gcc.scm (gcj)[source]: Inherit from "gcc" package.
[native-inputs]: Conditionally add arm-patch.
[arguments]: Conditionally add phase "apply-arm-patch".
2016-11-30 16:03:11 +01:00
Tobias Geerinckx-Rice 7d07e2a527
gnu: gnutls: Update 3.5.6.
* gnu/packages/tls.scm (gnutls): Update to 3.5.6.
2016-11-30 14:26:28 +01:00
Manolis Ragkousis 9b5f498def
gnu: glibc-hurd: Force mach/hurd/libpthread subdirs to build first.
* gnu/packages/base.scm (glibc/hurd)[arguments]: Replace 'build' phase.

Co-authored-by: Ludovic Court<C3><A8>s <ludo@gnu.org>
2016-11-30 15:17:38 +02:00
Leo Famulari 1d60f7c2b3
gnu: borg: Fix the test suite.
* gnu/packages/backup.scm (borg)[arguments]: Use
add-installed-pythonpath and disable tests related to FUSE.
2016-11-30 01:52:16 -05:00
Leo Famulari 663d5b5330
gnu: git: Update to 2.11.0.
* gnu/packages/version-control.scm (git): Update to 2.11.0.
2016-11-29 23:54:37 -05:00
Mathieu Lirzin 365de1e7a5
gnu: Add Cuirass.
* gnu/packages/ci.scm (cuirass): New variable.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2016-11-29 23:10:11 +01:00
David Craven 43ddcd723e
gnu: guix-0.11.0: Add guile-ssh to inputs.
* gnu/packages/package-management.scm (guile-ssh)[inputs]: Add
  guile-ssh.
  [arguments]: Add guile-ssh to GUILE_LOAD_PATH.
2016-11-29 22:40:03 +01:00
Ricardo Wurmus a19a6d3ac8
gnu: frescobaldi: Disable tests.
* gnu/packages/music.scm (frescobaldi)[arguments]: Disable tests.
2016-11-29 22:06:50 +01:00
John Darrington 660516e875
gnu: Add zzuf
* gnu/packages/debug.scm (zzuf): New variable.
2016-11-29 21:32:09 +01:00
Tobias Geerinckx-Rice 3084a99084
gnu: libxi: Update to 1.7.8.
* gnu/packages/xorg.scm (libxi): Update to 1.7.8.
2016-11-29 19:16:15 +01:00
Tobias Geerinckx-Rice 7f81d7f4a5
gnu: libxfont: Update to 1.5.2.
* gnu/packages/xorg.scm (libxfont): Update to 1.5.2.
2016-11-29 19:15:48 +01:00
Tobias Geerinckx-Rice 7e49a851b5
gnu: gphoto2, libgphoto2: Use libjpeg-turbo.
* gnu/packages/photo.scm (gphoto2, libgphoto2)[inputs]: Add libjpeg-turbo.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 9b81876f5f
gnu: spice: Use libjpeg-turbo instead of libjpeg.
* gnu/packages/spice.scm (spice)[inputs]: Use libjpeg-turbo as suggested
during the build.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 7cba7647a5
gnu: icecat: Use libjpeg-turbo instead of bundled libjpeg.
* gnu/packages/gnuzilla.scm (icecat)[source]: Remove bundled libjpeg, which
is actually libjpeg-turbo.
[inputs]: Add libjpeg-turbo.
[arguments]: Use it.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 37e05d64e4
gnu: Add libjpeg-turbo.
* gnu/packages/image.scm (libjpeg-turbo): New variable.
2016-11-29 19:15:47 +01:00
Hartmut Goebel dc2ef09ad7
gnu: kauth: Fix cmake macros to be used by other packages.
* gnu/packages/kde-framework.scm (kauth)[phases]: New phase
  fix-cmake-install-paths.
2016-11-29 19:13:40 +01:00
Hartmut Goebel 7b722e3cba
gnu: extra-cmake-modules: Always install into /lib and not into /lib64.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[phases]:
  New phase fix-lib-path.
2016-11-29 19:11:09 +01:00
Hartmut Goebel c1265fcc70
gnu: Add ksyntaxhighlighting.
* gnu/packages/kde-frameworks.scm (ksyntaxhighlighting): New variable.
2016-11-29 19:11:09 +01:00
Hartmut Goebel 7feff6f6dc
gnu: Update kde-frameworks to 5.28.
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.28.1
  (extra-cmake-modules, attica, bluez-qt, breeze-icons, kapidox,
  karchive, kcodecs, kconfig, kcoreaddons, kdbusaddons, kdnssd,
  kguiaddons, ki18n, kidletime, kitemmodels, kitemviews, kplotting,
  kwayland, kwidgetsaddons, kwindowsystem, modemmanager-qt,
  networkmanager-qt, oxygen-icons, solid, sonnet, threadweaver, kauth,
  kcompletion, kcrash, kdoctools, kfilemetadata, kimageformats,
  kjobwidgets, knotifications, kpty, kunitconversion, baloo,
  kactivities, kactivities-stats, kbookmarks, kcmutils,
  kconfigwidgets, kdeclarative, kded, kdesignerplugin, kdesu,
  kemoticons, kglobalaccel, kiconthemes, kinit, kio, knewstuff,
  knotifyconfig, kparts, kpeople, krunner, kservice, ktexteditor,
  ktextwidgets, kwallet, kxmlgui, kxmlrpcclient, plasma-framework,
  frameworkintegration): Update to 5.28.0
2016-11-29 19:11:09 +01:00
Hartmut Goebel 03e856ddf5
Merge branch 'python-build-system'. 2016-11-29 19:06:27 +01:00
Hartmut Goebel 80983df357
gnu: python2-discogs-client: Remove python2-setuptools from inputs.
* gnu/packages/music.scm (python2-discogs-client): Use simply
  "package-with-python2". Remove inheriting from python-discogs-client
  since adding python2-setuptools to [native-inputs] has been the sole
  reason for inheriting.
  (python-discogs-client) Remove the now needless [properties]
  "python2-variant".
2016-11-29 19:02:35 +01:00
Efraim Flashner 072f1e22cc
gnu: dovecot: Update to 2.2.26.0.
* gnu/packages/mail.scm (dovecot): Update to 2.2.26.0.
[arguments]: Patch shebangs in test file.
2016-11-29 19:52:21 +02:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Hartmut Goebel 2cb64f3b1b
gnu: wicd: Fix build.
* gnu/packages/wicd.scm (wicd) [arguments]: Disable installation
  via setuptools (and --single-version-externally-managed).
2016-11-29 18:39:16 +01:00
Hartmut Goebel 388606a72b
gnu: wxPython: Remove useless inputs.
* gnu/packages/wxwidgets.scm (python2-wxpython) [native-inputs]: Remove
  setuptools, which is already included in python.
2016-11-29 18:39:15 +01:00
Hartmut Goebel 6f1dcafd81
gnu: wxPython: Fix build.
* gnu/packages/wxwidgets.scm (python2-wxpython) [arguments]: Disable
  installation via setuptools (and --single-version-externally-managed).
2016-11-29 18:39:14 +01:00
Ludovic Courtès 683c5ab70a
gnu: oxygen-icons: Add 'upstream-name' property.
Fixes <http://bugs.gnu.org/25020>.
Reported by Hartmut Goebel <h.goebel@goebel-consult.de>.

* gnu/packages/kde-frameworks.scm (oxygen-icons)[properties]: New
field.
2016-11-29 16:12:32 +01:00
Efraim Flashner a409de9811
gnu: efl: Update to 1.18.3.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.3.
2016-11-29 16:12:47 +02:00
Efraim Flashner 07cda02c5b
gnu: wine: Use 'modify-phases' syntax.
* gnu/packages/wine.scm (wine)[arguments]: Use 'modify-phases' syntax.
2016-11-29 16:12:47 +02:00
Efraim Flashner 658c987fdd
gnu: wine: Update to 1.9.24.
* gnu/packages/wine.scm (wine): Update to 1.9.24.
[home-page]: Use https.
2016-11-29 16:12:41 +02:00
Ricardo Wurmus ded69d6f86
gnu: Add non-session-manager.
* gnu/packages/music.scm (non-session-manager): New variable.
2016-11-29 10:59:17 +01:00
Efraim Flashner 0944bb1a6a
gnu: offlineimap: Update to 7.0.10.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.10.
2016-11-29 11:02:39 +02:00
Efraim Flashner c51d926c74
gnu: cairo: Fix CVE-2016-9082.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb)[source]: Use patch.
[replacement]: New field, set false.
* gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be
replaced by a new custom patched cairo.
* gnu/packages/patches/cairo-CVE-2016-9082.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-11-29 09:45:48 +02:00
Efraim Flashner eb55f01821
gnu: Add viewnior.
* gnu/packages/image-viewers.scm (viewnior): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-29 09:38:33 +02:00
Efraim Flashner 22486fbea6
gnu: Add wgetpaste.
* gnu/packages/wget.scm (wgetpaste): New variable.
2016-11-29 09:35:39 +02:00
Efraim Flashner 3e757c005f
gnu: aspell-dict-en: Update to 2016.11.20-0.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.11.20-0.
2016-11-29 09:35:11 +02:00
Leo Famulari f265a3cee5
gnu: libarchive: Update to 3.2.2.
* gnu/packages/backup.scm (libarchive): Update to 3.2.2.
[source]: Remove obsolete patches.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-28 21:10:25 -05:00
Leo Famulari e673a1df29
gnu: libarchive: Fix typo in 'libarchive-safe_fprintf-buffer-overflow.patch'.
* gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch:
Use correct URL in patch documentation.
2016-11-28 21:10:19 -05:00
Marius Bakke 7c635ed6f7
gnu: perl-dbd-mysql: Update to 4.041 [security fix].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.041.
[source]: Update CPAN URI.
2016-11-28 23:05:23 +01:00
Ricardo Wurmus bd3be46e7f
gnu: Add r-gkmsvm.
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr.
* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots.
* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata.
* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 2d9fb1702f
gnu: Add r-seqgl.
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus c827f20286
gnu: Add r-chipkernels.
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools.
* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus f05c7eb48d
gnu: Add r-kernlab.
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc.
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus d71605294f
gnu: Add r-wgcna.
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster.
* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore.
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut.
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus e619a5c245
gnu: Add r-r4rna.
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams.
* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets.
* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger.
* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch.
* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-28 22:43:15 +01:00
Ricardo Wurmus eb21d24806
gnu: lv2: Update to 1.14.0.
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
2016-11-28 22:08:37 +01:00
Ricardo Wurmus 1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f.
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
2016-11-28 22:07:20 +01:00
Efraim Flashner 5e9cce55b5
gnu: ntp: Update to 4.2.8p9.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
2016-11-28 21:56:30 +02:00
Efraim Flashner d35de59b64
gnu: ntp: Fix indentation.
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
2016-11-28 20:53:14 +02:00
John Darrington f0ddc5e55b
gnu: Add editres.
* gnu/packages/xorg.scm (editres): New variable.
2016-11-28 18:22:15 +01:00
Ben Woodcroft 9926875572
gnu: Add newick-utils.
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
2016-11-28 09:00:41 +10:00
Efraim Flashner c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues].
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
2016-11-27 22:19:55 +02:00
Tobias Geerinckx-Rice f6c44a3f04
gnu: gphoto2: Update to 2.5.11.
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
2016-11-27 20:58:18 +01:00
Tobias Geerinckx-Rice 69874f5fd2
gnu: libgphoto2: Update to 2.5.11.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
2016-11-27 20:58:18 +01:00
Leo Famulari f27ec24d88
gnu: beets: Update to 1.4.1.
* gnu/packages/music.scm (beets): Update to 1.4.1.
[inputs]: Add python2-discogs-client.
2016-11-27 14:49:36 -05:00
Leo Famulari d3db5efbf9
gnu: Add python-discogs-client.
* gnu/packages/music.scm (python-discogs-client,
python2-discogs-client): New variables.
2016-11-27 14:49:36 -05:00
Leo Famulari 6782444764
gnu: python-rarfile: Update to 2.8.
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-27 14:49:35 -05:00
Leo Famulari 8c4964dd51
gnu: python-jellyfish: Update to 0.5.6.
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to
0.5.6.
2016-11-27 14:49:35 -05:00
Leo Famulari b04d9b97c4
gnu: python-pylast: Update 1.6.0.
* gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
2016-11-27 14:49:35 -05:00
Leo Famulari daedf34db9
gnu: python-musicbrainzngs: Update to 0.6.
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update
to 0.6.
[arguments]: Disable the test suites.
2016-11-27 14:49:35 -05:00
Leo Famulari 38e81a2c55
gnu: python-munkres: Update to 1.0.8.
* gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
2016-11-27 14:49:34 -05:00
Leo Famulari 4228a79e6f
gnu: python-mutagen: Update to 1.35.1.
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1.
[native-inputs]: Add python-pytest.
2016-11-27 14:49:30 -05:00
Ricardo Wurmus 1bf5a7e920
gnu: gcj: Inherit source field from "gcc".
* gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
2016-11-27 19:00:57 +01:00
Ricardo Wurmus bac6409970
gnu: gcj: Correct paths in ARM patch.
* gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
2016-11-27 18:59:54 +01:00
Marius Bakke 8c4140e49e
gnu: notmuch: Update to 0.23.3.
* gnu/packages/mail.scm (notmuch): Update to 0.23.3.
[arguments]: Re-enable previously failing tests.
2016-11-27 18:29:44 +01:00
Leo Famulari cd569f0d29
gnu: gcj: Fix typo in patch filename.
This is a followup to commit dbf8f84f15.

Reported by quigonjinn on #guix.

* gnu/packages/gcc.scm (gcj)[source]: Fix typo.
2016-11-27 10:57:33 -05:00
Danny Milosavljevic 7574cecf0f
gnu: python2-flask: Pick up python-flask's native-inputs.
* gnu/packages/python.scm (python2-flask)[native-inputs]:
  Pick up python-flask's native-inputs.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-27 13:23:53 +01:00
Marius Bakke cf7daaf5da
gnu: docbook-xsl: Update to 1.79.1.
* gnu/packages/docbook.scm (docbook-xsl): Update to 1.79.1.
2016-11-27 11:26:49 +01:00
Marius Bakke 988e1dca4b
gnu: udisks: Update to 2.1.8.
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.8.
[home-page]: Use HTTPS.
2016-11-27 11:13:50 +01:00
Maxim Cournoyer aef5055ff9
gnu: udisks: Add manpages.
* gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml
and docbook-xsl.
[arguments]: Add #:make-flags to specify XML catalog files for manuals.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-27 11:10:31 +01:00
Ricardo Wurmus dbf8f84f15
gnu: gcj: Fix build on armhf.
* gnu/packages/patches/gcj-arm-mode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gcc.scm (gcj): Add patch.
[arguments]: Delete failing tests.
2016-11-27 10:04:57 +01:00
Ricardo Wurmus 253cdd6c14
gnu: Add biber-2.5.
* gnu/packages/tex.scm (biber-2.5): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus d400068085
gnu: Add biber.
* gnu/packages/tex.scm (biber): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus ebcf74daf8
gnu: Add perl-text-bibtex.
* gnu/packages/tex.scm (perl-text-bibtex): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 93863a5e72
gnu: Add perl-xml-libxslt.
* gnu/packages/xml.scm (perl-xml-libxslt): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus df669244f9
gnu: perl-unicode-linebreak: Update to 2016.003.
* gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2016.003.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 5d2ecbffb2
gnu: Add perl-unicode-collate.
* gnu/packages/perl.scm (perl-unicode-collate): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 37e7a4929f
gnu: Add perl-unicode-normalize.
* gnu/packages/perl.scm (perl-unicode-normalize): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus dc32ee5381
gnu: Add perl-text-roman.
* gnu/packages/perl.scm (perl-text-roman): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 44c31aaae8
gnu: Add perl-text-csv-xs.
* gnu/packages/perl.scm (perl-text-csv-xs): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 0ef5191c88
gnu: Add perl-sort-key.
* gnu/packages/perl.scm (perl-sort-key): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 3521dc9293
gnu: Add perl-mozilla-ca.
* gnu/packages/perl.scm (perl-mozilla-ca): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 37115dc650
gnu: Add perl-lingua-translit.
* gnu/packages/perl.scm (perl-lingua-translit): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus e9ef394ac9
gnu: Add perl-ipc-cmd.
* gnu/packages/perl.scm (perl-ipc-cmd): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 81157cf5a7
gnu: Add perl-extutils-libbuilder.
* gnu/packages/perl.scm (perl-extutils-libbuilder): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 0185442003
gnu: Add perl-encode-hanextra.
* gnu/packages/perl.scm (perl-encode-hanextra): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 2bc1b85ce6
gnu: Add perl-encode-jis2k.
* gnu/packages/perl.scm (perl-encode-jis2k): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 891d9679a2
gnu: Add perl-encode-eucjpascii.
* gnu/packages/perl.scm (perl-encode-eucjpascii): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 49a3fcc13c
gnu: perl-encode-detect: Move to alphabetical position.
* gnu/packages/perl.scm (perl-encode-detect): Move variable definition.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 7a146c2528
gnu: Add perl-datetime-calendar-julian.
* gnu/packages/perl.scm (perl-datetime-calendar-julian): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 36dd594316
gnu: Add perl-date-simple.
* gnu/packages/perl.scm (perl-date-simple): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus cc3dafbb02
gnu: Add perl-data-uniqid.
* gnu/packages/perl.scm (perl-data-uniqid): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 9413e95f59
gnu: Add perl-data-compare.
* gnu/packages/perl.scm (perl-data-compare): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus adbf4b944c
gnu: Add perl-business-ismn.
* gnu/packages/perl.scm (perl-business-ismn): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 296663839b
gnu: Add perl-tie-cycle.
* gnu/packages/perl.scm (perl-tie-cycle): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus e0b6accf19
gnu: Add perl-business-issn.
* gnu/packages/perl.scm (perl-business-issn): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 72f8646ef5
gnu: Add perl-business-isbn.
* gnu/packages/perl.scm (perl-business-isbn): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus a3f5beb7a2
gnu: Add perl-business-isbn-data.
* gnu/packages/perl.scm (perl-business-isbn-data): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 3f1df54cc0
gnu: Add perl-autovivification.
* gnu/packages/perl.scm (perl-autovivification): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus d4ba9a5f21
gnu: Add perl-mojolicious.
* gnu/packages/perl-web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 45591fd7fd
gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host.
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): New
variables.
* gnu/packages/audio.scm (ardour)[inputs]: Replace "fftw" and "fftwf"
with "fftw-with-threads" and "fftwf-with-threads", respectively.
* gnu/packages/music.scm (mod-host)[inputs]: Likewise.
2016-11-27 09:48:16 +01:00
Efraim Flashner bd128e2e8f
gnu: mpfr: Update to 3.1.5.
* gnu/packages/multiprecision.scm (mpfr): Update to 3.1.5.
2016-11-27 10:47:06 +02:00
Efraim Flashner 51c8e2996c
gnu: sed: Use 'modify-phases' syntax.
* gnu/packages/base.scm (sed)[arguments]: Use 'modify-phases' syntax.
2016-11-27 10:25:45 +02:00
Efraim Flashner b7a5a4821f
gnu: grep: Update to 2.26.
* gnu/packages/base.scm (grep): Update to 2.26.
2016-11-27 10:23:59 +02:00
Efraim Flashner 31bd09e5a8
gnu: nettle: Update to 3.3.
* gnu/packages/nettle.scm (nettle): Update to 3.3.
[home-page]: Use https.
2016-11-27 09:44:48 +02:00
Efraim Flashner feefbb0946
gnu: bash: Update to patch level 5.
* gnu/packages/bash.scm (%patch-url-seqno): Update for bash-4.4.
(%patch-series-4.4): Add patches 1 to 5.
2016-11-27 09:24:40 +02:00
Efraim Flashner c296d5d119
gnu: icu4c: Use 'modify-phases' syntax.
* gnu/packages/icu4c.scm (icu4c)[arguments]: Use 'modify-phases' syntax.
2016-11-27 09:24:40 +02:00
Efraim Flashner 5499de02ca
gnu: icu4c: Update to 58.1.
* gnu/packages/icu4c.scm (icu4c): Update to 58.1.
[source]: Download from their website.
[arguments]: Remove extra bash replacement.
2016-11-27 09:24:40 +02:00
Leo Famulari b46cefc954
gnu: libsodium: Update to 1.0.11.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.11.
2016-11-26 20:48:34 -05:00
Tobias Geerinckx-Rice d32f4800d6
gnu: libgphoto2: Add XML support.
* gnu/packages/photo.scm (libgphoto2)[inputs]: Add libxml2.
2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice 9dcc9bbf3b
gnu: gphoto2: Update to 2.5.10.
* gnu/packages/photo.scm (gphoto2): Update to 2.5.10.
2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice 35c0ad4448
gnu: libgphoto2: Update to 2.5.10.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.10.
2016-11-27 01:43:39 +01:00
Toni Reina c3e2a2471c
gnu: Add Mozilla Fira Mono font.
* gnu/packages/fonts.scm (font-fira-mono): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-26 23:21:37 +01:00
Leo Famulari e30abbbb02
gnu: cyrus-sasl: Incorporate grafted patch.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[source]: Use
'cyrus-sasl-CVE-2013-4122.patch'.
[replacement]: Remove field.
(cyrus-sasl/fixed): Remove variable.
2016-11-26 16:23:42 -05:00
Leo Famulari a282cdae10
Merge branch 'master' into core-updates 2016-11-26 16:21:47 -05:00
Leo Famulari cd65d600ac
gnu: cyrus-sasl: Fix CVE-2013-4122.
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field.
(cyrus-sasl/fixed): New variable.
[source]: Use patch.
2016-11-26 16:21:02 -05:00
Efraim Flashner 439a2f62ce
gnu: ffmpeg: Update to 3.2.1.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.1.
2016-11-26 22:53:13 +02:00
Leo Famulari 9e46245b89
gnu: gst-plugins-good: Fix CVE-2016-{9634,9635,9636} and other security issues.
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good): Use them.
2016-11-26 14:27:24 -05:00
Leo Famulari cf3678df6e
gnu: psyclpc: Update comment.
This is a followup to commit eaa45301f4.

* gnu/packages/messaging.scm (psyclpc): Update comment.
2016-11-26 13:36:51 -05:00
ng0 ebfc2ecc3c
gnu: Move content of (gnu packages psyc) into (gnu packages messaging).
* gnu/packages/psyc.scm (perl-net-psyc, libpsyc, psyclpc): Move this ...
* gnu/packages/messaging.scm (perl-net-psyc, libpsyc, psyclpc): ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove psyc.scm.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26 13:23:46 -05:00
ng0 eaa45301f4
gnu: psyclpc: Upgrade to 20160821-2.61cf9aa.
This makes the package reproducible.

* gnu/packages/psyc.scm (psyclpc): Upgrade to 20160821-2.61cf9aa.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26 13:23:46 -05:00
Danny Milosavljevic c6c80104ab
gnu: python-flask: Update to 0.11.1.
* gnu/packages/python.scm (python-flask): Update to 0.11.1.
[native-inputs]: Add python-click.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
Danny Milosavljevic 61684de287
gnu: python-pyopenssl: Update to 16.2.0.
* gnu/packages/python.scm (python-pyopenssl): Update to 16.2.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
Danny Milosavljevic b2e6e150aa
gnu: python-simplejson: Update to 3.10.0.
* gnu/packages/python.scm (python-simplejson): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
ng0 faa29e4bdb
gnu: Add mumble.
* gnu/packages/telephony.scm (mumble): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 12:32:22 +01:00
Marius Bakke 4f55441fe3
gnu: transmission: Update to 2.92.
* gnu/packages/bittorrent.scm (transmission): Update to 2.92.
[inputs]: Add cyrus-sasl.
2016-11-26 12:32:01 +01:00
Ben Woodcroft 5e0a0f4226
gnu: roary: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (roary): Update to 3.7.0.
2016-11-26 20:15:39 +10:00
Ben Woodcroft 31a9d653ad
gnu: Add proteinortho.
* gnu/packages/bioinformatics.scm (proteinortho): New variable.
2016-11-26 20:15:37 +10:00
Julien Lepiller d3eff97afd
gnu: Add python-polib.
* gnu/packages/python.scm (python-polib, python2-polib): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 10:29:29 +01:00
Marius Bakke 3ad8cb4163
gnu: sqlite: Update to 3.15.1.
* gnu/packages/databases.scm (sqlite): Update to 3.15.1.
[source]: Download from sqlite.org.
[home-page]: Use HTTPS.
(sqlite-3.15.1): Remove.
* gnu/packages/php.scm (php)[inputs]: Change 'sqlite-3.15.1' to 'sqlite'.
2016-11-26 09:09:17 +01:00
Leo Famulari 53d892dd92
gnu: imagemagick: Update to 6.9.6-6 [fixes CVE-2016-9556].
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-6.
2016-11-26 00:38:45 -05:00
Leo Famulari 0959478c72
gnu: Add missing module import to (gnu packages ldc).
This is a followup to commit e44b511298.

* gnu/packages/ldc.scm: Import (gnu packages python).
2016-11-25 23:18:29 -05:00
Danny Milosavljevic e44b511298
gnu: ldc: Update to 0.17.2.
* gnu/packages/ldc.scm (ldc): Update to 0.17.2.
* gnu/packages/patches/ldc-disable-tests.patch: Fix timezone file name.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-25 23:54:51 +01:00
Ludovic Courtès 6634180f9e
gnu: guile-ssh: Update to 0.10.2.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.10.2.
[home-page]: Update.
[source]: Use the 'url-fetch' method and a GitHub generated
tarball.
[arguments] <autoreconf>: Remove now unneeded 'chmod' call.
2016-11-25 23:44:20 +01:00
Ricardo Wurmus 7276b5604d
gnu: hydrogen: Update to 0.9.7.
* gnu/packages/music.scm (hydrogen): Update to 0.9.7.
2016-11-25 21:44:16 +01:00
Leo Famulari c415f76302
gnu: python-betamax: Fix typo.
* gnu/packages/python.scm (python-betamax): Fix typo.
2016-11-25 11:31:43 -05:00
Leo Famulari de32aa74b4
Merge branch 'master' into python-build-system 2016-11-25 11:20:21 -05:00
Tobias Geerinckx-Rice d66cbd1adc
gnu: btrfs-progs: Update to 4.8.4.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.4.
2016-11-25 17:00:51 +01:00
Tobias Geerinckx-Rice fc89cb691d
gnu: lz4: Update to 1.7.4.2.
* gnu/packages/compression.scm (lz4): Update to 1.7.4.2.
2016-11-25 16:31:20 +01:00
Tobias Geerinckx-Rice dead1067c3
gnu: hplip: Update to 3.16.11.
* gnu/packages/cups.scm (hplip): Update to 3.16.11.
2016-11-25 16:31:10 +01:00
Ricardo Wurmus aaaf8b3844
gnu: qtractor: Update to 0.8.0.
* gnu/packages/music.scm (qtractor): Update to 0.8.0.
2016-11-25 13:08:06 +01:00
Alex Kost 1e34721435
gnu: qemu: Install all required info files.
* gnu/packages/qemu.scm (qemu)[arguments]: Adjust 'install-info' phase
to find all info files (including "*.info-N").
2016-11-25 16:09:22 +03:00
Theodoros Foradis 8f528bd442
gnu: Add kicad-library.
* gnu/packages/engineering.scm (kicad-library): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:11 -05:00
Theodoros Foradis befc9ff643
gnu: Add kicad.
* gnu/packages/engineering.scm (kicad): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:11 -05:00
Theodoros Foradis b353c7d201
gnu: Add python2-wxpython.
* gnu/packages/wxwidgets.scm (python2-wxpython): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:10 -05:00
Theodoros Foradis 2cd3b6fd03
gnu: Add wxwidgets-gtk2.
* gnu/packages/wxwidgets.scm (wxwidgets-gtk2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:10 -05:00
Leo Famulari 88d45b74c1
gnu: nginx: Update to 1.11.6.
* gnu/packages/web.scm (nginx): Update to 1.11.6.
[arguments]: Remove the obsolete option --with-ipv6 from #:configure-flags.
2016-11-25 00:07:40 -05:00
Tobias Geerinckx-Rice e0f8a520ed
gnu: miniupnpc: Improve synopsis and description.
* gnu/packages/upnp.scm (miniupnp)[synopsis, description]: Edit, fix typos,
add some relevant (search) terms from the home page, and expand acronyms.
2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice 5af82630fe
gnu: miniupnpc: Use the correct ‘upnpc’ in ‘external-ip’.
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Add ‘qualify-paths’ phase.
2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice cdbdaf7b6b
gnu: miniupnpc: Use ‘modify-phases’ syntax.
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Use ‘modify-phases’.
2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice 2d3b0203f4
gnu: miniupnpc: Update to 2.0.
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.
2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice ade5848576
gnu: vim: Update to 8.0.0101.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0101.
2016-11-25 02:21:49 +01:00
Ludovic Courtès 62126576fc
gnu: hdf5: Build the C++ interface.
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
2016-11-24 21:43:47 +01:00
Tobias Geerinckx-Rice 6f09c100d9
gnu: vim: Update to 8.0.0096.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0096.
2016-11-24 16:57:22 +01:00
Tobias Geerinckx-Rice c50f2af9f8
gnu: ir: Use archived tarball and home page.
* gnu/packages/audio.scm (ir)[source]: Use a list of archive mirrors.
[home-page]: Link to an Internet Archive snapshot.
2016-11-24 06:34:37 +01:00
Tobias Geerinckx-Rice 2df984f278
gnu: ir: Use ‘modify-phases’ syntax.
* gnu/packages/audio.scm (ir)[arguments]: Use ‘modify-phases’.
2016-11-24 06:34:37 +01:00
Leo Famulari c8d1e7a130
gnu: libgc-7.2: Remove package.
This package variant was unused.

* gnu/packages/bdw-gc.scm (libgc-7.2): Delete variable.
2016-11-23 23:11:30 -05:00
Leo Famulari 0bd1097c50
gnu: libtiff: Update to 4.0.7.
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
[native-inputs]: Add gcc-5.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-23 22:53:43 -05:00
Leo Famulari 2ac7d54616
Merge branch 'master' into staging 2016-11-23 22:24:52 -05:00
Leo Famulari 1c9f78eca1
gnu: python-passlib: Update to 1.7.0.
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.0.
2016-11-23 14:38:05 -05:00
Efraim Flashner 262c2d33bc
gnu: perl-digest-md5: Fix typo.
* gnu/packages/perl.scm (perl-digest-md5)[arguments]: Remove extra ')'.
2016-11-23 18:16:53 +02:00
ng0 8a28e717ba
gnu: Add perl-digest-md5.
* gnu/packages/perl.scm (perl-digest-md5): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-23 16:46:47 +01:00
Efraim Flashner bc05caee77
gnu: chez.scm: Add '#:use-module srfi srfi-1'.
This is a follow-up to 1e16648f82.

* gnu/packages/chez.scm: Add '#:use-module srfi srfi-1'.
2016-11-23 12:42:36 +02:00
Efraim Flashner 8553fe5734
gnu: Add aspell-dict-he.
* gnu/packages/aspell.scm (aspell-dict-he): New variable.
2016-11-23 12:38:28 +02:00
Efraim Flashner 1e16648f82
gnu: chez-scheme: Remove support for armhf.
* gnu/packages/chez.scm (chez-scheme)[supported-systems]: Remove
armhf-linux from the list of supported systems.
2016-11-23 12:37:17 +02:00
John Darrington 5ac13f9218
gnu: Update mit-krb5 to version 1.14.4.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.4
2016-11-23 07:21:28 +01:00
Leo Famulari c0bb7178be
gnu: libtiff: Update to 4.0.7.
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-23 00:17:12 -05:00
Leo Famulari de76f0a45b
Merge branch 'master' into core-updates 2016-11-23 00:11:30 -05:00
Mark H Weaver 08b3e4a970
gnu: linux-libre: Update to 4.8.10.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.10.
2016-11-22 21:59:54 -05:00
Mark H Weaver 4263eb4dd0
gnu: linux-libre@4.4: Update to 4.4.34.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.34.
2016-11-22 21:49:39 -05:00
Ludovic Courtès 66ebb5bca3
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 1f410017.
2016-11-23 00:03:18 +01:00
Ludovic Courtès 35b2f18c5f
Revert "gnu: Update mit-krb5 to version 1.14.4."
This reverts commit 2947ff6430, which
would have caused too many rebuilds for 'master'.
2016-11-23 00:03:17 +01:00
Ludovic Courtès 106b389e52
gnu: Add 'cryptsetup-static'.
* gnu/packages/cryptsetup.scm (static-library): New procedure.
(cryptsetup-static): New variable.
2016-11-22 23:45:01 +01:00
Ludovic Courtès 01f94cca19
gnu: Add 'lvm2-static'.
* gnu/packages/patches/lvm2-static-link.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (lvm2)[source](patches): New field.
(lvm2-static): New variable.
2016-11-22 22:59:31 +01:00
Ludovic Courtès 10da75dff8
gnu: grub: Add dependency on LVM2.
* gnu/packages/grub.scm (grub)[inputs]: Add LVM2.
2016-11-22 22:59:31 +01:00
Christopher Allan Webber 8957af324b
gnu: python-pyld: Update to 0.7.1.
* gnu/packages/python.scm (python-pyld): Update to 0.7.1.
2016-11-22 15:29:33 -06:00
Marius Bakke 61320932ed
gnu: harfbuzz: Update to 1.3.3.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.3.3.
[home-page]: Use HTTPS.
2016-11-22 21:46:59 +01:00
John Darrington 2947ff6430
gnu: Update mit-krb5 to version 1.14.4.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.4
2016-11-22 21:27:19 +01:00
Marius Bakke 1f410017ff
gnu: notmuch: Update to 0.23.2.
* gnu/packages/mail.scm (notmuch): Update to 0.23.2.
2016-11-22 20:44:53 +01:00
Marius Bakke 6317d36f3b
gnu: notmuch: Skip tests that fail with gnupg-2.1.16.
* gnu/packages/mail.scm (notmuch)[arguments]: Add environment variable
to skip tests that broke after gnupg-2.1.16.
2016-11-22 20:44:48 +01:00
Leo Famulari be72eb98fa
gnu: libtiff: Update replacement to 4.0.7.
* gnu/packages/image.scm (libtiff)[replacement]: Update to 4.0.7.
(libtiff-4.0.7): New variable. Update home-page and source URLs.
(libtiff/fixed): Delete variable.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch,
gnu/packages/patches/libtiff-CVE-2016-9273.patch,
gnu/packages/patches/libtiff-CVE-2016-9297.patch,
gnu/packages/patches/libtiff-CVE-2016-9448.patch,
gnu/packages/patches/libtiff-uint32-overflow.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-22 12:30:36 -05:00
Marius Bakke c70047f12d
gnu: freetype: Update to 2.7.
* gnu/packages/fontutils.scm (freetype): Update to 2.7.
[home-page]: Use HTTPS.
2016-11-22 17:50:07 +01:00
Marius Bakke d8e3bb082d
gnu: vim: Update to 8.0.0095.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0095.
2016-11-22 17:33:07 +01:00
Kei Kebreau c3cc7d412a
gnu: Add espeak.
* gnu/packages/audio.scm (espeak): New variable.
2016-11-22 11:24:41 -05:00
Eric Bavier e36a67c91a
gnu: Add openfwwf-firmware.
* gnu/packages/firmware.scm (b43-tools, openfwwf-firmware): New
variables.
2016-11-22 09:38:36 -06:00
Efraim Flashner 4a5ec78d5f
gnu: w3m: Update to 0.5.3+git20161120 [fixes security issues].
Fixes CVE-2016-9439 and others.

* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20161120.
2016-11-22 14:00:11 +02:00
Efraim Flashner 83a3e805be
gnu: w3m: Use 'modify-phases' syntax.
* gnu/packages/w3m.scm (w3m)[arguments]: Use 'modify-phases' syntax.
2016-11-22 14:00:11 +02:00
Ben Woodcroft ee7518a009
gnu: ruby: Update replacement to 2.3.3.
* gnu/packages/ruby.scm (ruby)[replacement]: Update to 2.3.3.
(ruby-2.3.2): Replace this ...
(ruby-2.3.3): ... with this.
2016-11-22 21:39:18 +10:00
Ben Woodcroft f4a8081d24
gnu: ruby: Update to 2.3.3.
* gnu/packages/ruby.scm (ruby): Update to 2.3.3.
2016-11-22 21:35:58 +10:00
Ben Woodcroft 8e5f8c98e2
gnu: diamond: Update to 0.8.27.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.27.
2016-11-22 21:01:21 +10:00
Ricardo Wurmus 1ea7969fa6
gnu: zynaddsubfx: Update to 3.0.0.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.0.
[inputs]: Add "mesa".
2016-11-22 09:47:16 +01:00
Tobias Geerinckx-Rice eec9c4a7c5
gnu: progress: Update to 0.13.1.
* gnu/packages/admin.scm (progress): Update to 0.13.1.
[native-inputs]: Add pkg-config and which.
[arguments]: Drop LDFLAGS (now handled by pkg-config) from #:make-flags.
2016-11-22 01:12:03 +01:00
Tobias Geerinckx-Rice 57742b35dc
gnu: ncurses: Install pkg-config ‘.pc’ files.
* gnu/packages/ncurses.scm (ncurses)[arguments]: Add ‘--enable-pc-files’
and ‘--with-pkg-config-libdir=’ to #:configure-flags. Create ‘non-wide’
compatibility symbolic links for ‘.pc’ files in the post-install-phase.
[native-inputs]: Add pkg-config.
2016-11-22 01:12:02 +01:00
Efraim Flashner dd3f8fe660
gnu: connman: Update to 1.33.
* gnu/packages/connman.scm (connman): Update to 1.33.
2016-11-21 23:52:19 +02:00
Petter 6e388b0839
gnu: openssl: Remove redundant use of mkdir-p.
* gnu/packages/tls.scm (openssl)[arguments]: Remove redundant (mkdir-p).

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:41:28 -05:00
Petter daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:39:54 -05:00
Leo Famulari 4b269baf44
gnu: libgc: Update to 7.6.0.
* gnu/packages/bdw-gc.scm (libgc): Update to 7.6.0.
2016-11-21 14:24:29 -05:00
Leo Famulari a8ce976fe6
gnu: libgc-7.2: Update to 7.2g.
* gnu/packages/bdw-gc.scm (libgc-7.2): Update to 7.2g.
2016-11-21 14:24:28 -05:00
Leo Famulari a373c68588
gnu: libatomic-ops: Update to 7.4.4.
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.4.4.
2016-11-21 14:17:29 -05:00
Alex Kost 7c90d0f40e
gnu: packages: Use gettext-minimal.
* gnu/packages/crypto.scm (tomb): Use 'gettext-minimal' instead of
'gnu-gettext'.
* gnu/packages/emacs.scm (m17n-db): Likewise.
* gnu/packages/ftp.scm (weex): Likewise.
* gnu/packages/games.scm (chromium-bsu): Likewise.
* gnu/packages/image.scm (steghide): Likewise.
* gnu/packages/linux.scm (radeontop): Likewise.
* gnu/packages/mpd.scm (sonata): Likewise.
* gnu/packages/networking.scm (whois): Likewise.
* gnu/packages/package-management.scm (guix-0.11.0): Likewise.
* gnu/packages/psyc.scm (psyclpc): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
* gnu/packages/vim.scm (vim-full): Likewise.
2016-11-21 19:47:30 +03:00
Hartmut Goebel 856f30b000
gnu: shared-mime-info: Update to 1.7
* gnu/packages/gnome.scm (shared-mime-info): Update to 1.7.
2016-11-21 17:17:11 +01:00
Leo Famulari dc6d1b9609
gnu: libtiff: Fix URL in 'libtiff-uint32-overflow.patch'.
* gnu/packages/patches/libtiff-uint32-overflow.patch: Fix URL.
2016-11-21 11:16:37 -05:00
Leo Famulari 6305b81fed
gnu: swig: Update to 3.0.10.
* gnu/packages/swig.scm (swig): Update to 3.0.10.
2016-11-21 11:10:06 -05:00
Ludovic Courtès c9eae83ffa
gnu: dico: Update to 2.4.
* gnu/packages/dico.scm (dico): Update to 2.4.
[source]: Remove 'snippet'.
2016-11-21 15:25:38 +01:00
Ricardo Wurmus 2316078a4e
gnu: Add emacs-emms-mode-line-cycle.
* gnu/packages/emacs.scm (emacs-emms-mode-line-cycle): New variable.
2016-11-21 11:52:26 +01:00
Efraim Flashner 83b294b6d6
gnu: opusfile: Update to 0.8.
* gnu/packages/xiph.scm (opusfile): Update to 0.8.
2016-11-21 10:49:45 +02:00
Efraim Flashner b1e25b08f2
gnu: obs: Update to 0.16.6.
* gnu/packages/video.scm (obs): Update to 0.16.6.
2016-11-21 07:14:05 +02:00
Efraim Flashner 89a30625b9
gnu: mpv: Update to 0.22.0.
* gnu/packages/video.scm (mpv): Update to 0.22.0.
2016-11-21 06:57:16 +02:00
Efraim Flashner 7ceee88c43
gnu: chez-scheme: Properly identify system architecture.
* gnu/packages/chez.dcm (chez-scheme)[arguments]: Substitute `uname -m'
for `uname -a' in configure, allowing proper identification of the
machine architecture.
2016-11-21 06:57:16 +02:00
Julien Lepiller 1845c2a436
gnu: Add php.
* gnu/packages/php.scm: New file.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch: New file.
* gnu/packages/patches/gd-fix-truecolor-format-correction.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add php.
(dist_patch_DATA): Add gd patches.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-11-20 17:54:14 +01:00
Marius Bakke b28a33512f
gnu: Add sqlite-3.15.1.
* gnu/packages/databases.scm (sqlite-3.15.1): New variable.
2016-11-20 17:46:32 +01:00
Nicolas Goaziou 43ffe220c8
gnu: lilypond: Update to 2.19.51.
* gnu/packages/music.scm (lilypond): Update to 2.19.51.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-20 17:46:21 +01:00
Leo Famulari 25291aca74
gnu: python-icalendar: Update to 3.11.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.
2016-11-20 11:22:27 -05:00
Ben J Woodcroft 66b1bac355
gnu: ruby: Update to 2.3.2.
* gnu/packages/ruby.scm (ruby): Update to 2.3.2.
[replacement]: Remove field.
[origin]: Remove patch.
* gnu/packages/patches/ruby-symlinkfix.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-20 15:50:10 +10:00
Leo Famulari 764c566221
gnu: gnupg: Update to 2.1.16.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.16.
[arguments]: Remove obsolete substitution from 'patch-paths' phase.
Remove 'set-home' phase. Add 'set-gnupg-home' phase.
2016-11-19 23:43:32 -05:00
宋文武 9fff9e6484
gnu: gtk-engines: Don't propagate GTK+.
* gnu/packages/gtk.scm (gtk-engines): Move gtk+ to 'inputs'.
2016-11-20 12:02:04 +08:00
Mark H Weaver 5a1ef07d3e
gnu: linux-libre: Update to 4.8.9.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.9.
2016-11-19 22:29:38 -05:00
Mark H Weaver 13172f0d79
gnu: linux-libre@4.4: Update to 4.4.33.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.33.
2016-11-19 22:28:07 -05:00
Ben Woodcroft 9b62c5a8fb
gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900].
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.2): New variable.
2016-11-20 11:38:12 +10:00
Ludovic Courtès 966a543b36
gnu: Use 'mirror://' URLs in several places.
* gnu/packages/emacs.scm (m17n-lib)[source]: Use 'mirror://'.
* gnu/packages/games.scm (extremetuxracer)[source]: Likewise.
* gnu/packages/gcc.scm (%gcc-infrastructure): Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[source]: Likewise.
* gnu/packages/perl.scm (perl)[source]: Likewise.
* gnu/packages/telephony.scm (exosip)[source]: Likewise.
* gnu/packages/wm.scm (xmonad)[source]: Likewise.
(ghc-xmonad-contrib)[source]: Likewise.
2016-11-19 18:44:54 +01:00
Ricardo Wurmus 18675264c6
gnu: Add samplv1.
* gnu/packages/music.scm (samplv1): New variable.
2016-11-19 17:54:50 +01:00
Ricardo Wurmus cf9af706fb
gnu: Add drumkv1.
* gnu/packages/music.scm (drumkv1): New variable.
2016-11-19 17:54:50 +01:00
Leo Famulari d3d2167728
gnu: libgpg-error: Update to 1.25.
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.25.
2016-11-19 11:54:40 -05:00
Leo Famulari 2fedcd1895
gnu: libtiff: Fix CVE-2016-9448.
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-19 11:31:00 -05:00
Leo Famulari b7e0f65b40
gnu: imagemagick: Update to 6.9.6-5.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-5.
2016-11-19 10:48:51 -05:00
Rene Saavedra 3446ffb57c
gnu: gnome-control-center: Add gdk-pixbuf input.
* gnu/packages/gnome.scm (gnome-control-center)[inputs]: Add gdk-pixbuf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-19 10:38:01 -05:00
ng0 8f49395064
gnu: Add emacs-danneskjold-theme.
* gnu/packages/emacs.scm (emacs-danneskjold-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 21:31:20 +08:00
ng0 5cd4129221
gnu: emacs-cyberpunk-theme: Update to 1.18.
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): Update to 1.18.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 20:19:03 +08:00
Nicolas Goaziou fd057b84ec
gnu: emacs-org: Update to 20161118.
* gnu/packages/emacs.scm (emacs-org): Update to 20161118.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 20:09:50 +08:00
宋文武 ae1e2133b9
gnu: opensmtpd: Correct CA certificates file path.
* gnu/packages/mail.scm (opensmtpd)[arguments]: Pass
'--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt' to #:configure-flags.
2016-11-19 19:19:16 +08:00
Ricardo Wurmus cfcef2c2ac
gnu: gx-switchless-wah-lv2: Update to 0-2.7b0869120.
* gnu/packages/music.scm (gx-switchless-wah-lv2): Update to
0-2.7b0869120.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus 8e6f6503f0
gnu: gx-slow-gear-lv2: Update to 0-2.cb852e042.
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-2.cb852e042.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus a7cd2d44e1
gnu: gx-vintage-fuzz-master-lv2: Update to 0-2.0fec0bc1e.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): Update to
0-2.0fec0bc1e.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus 1df4d85f8b
gnu: gx-super-fuzz-lv2: Update to 0-2.f40389575.
* gnu/packages/music.scm (gx-super-fuzz-lv2): Update to 0-2.f40389575.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus c1802b0834
gnu: gx-voodoo-fuzz-lv2: Update to 0-2.aec7889b4.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): Update to 0-2.aec7889b4.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus dad6cb50da
gnu: gx-hyperion-lv2: Update to 0-2.6a096a664.
* gnu/packages/music.scm (gx-hyperion-lv2): Update to 0-2.6a096a664.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus 31de5e2244
gnu: gx-saturator-lv2: Update to 0-2.0b581ac85.
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-2.0b581ac85.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus 4ed4bb11cb
gnu: qsynth: Update to 0.4.3.
* gnu/packages/audio.scm (qsynth): Update to 0.4.3.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus f2bd238bcd
gnu: synthv1: Update to 0.8.0.
* gnu/packages/music.scm (synthv1): Update to 0.8.0.
2016-11-19 11:26:15 +01:00
Nicolas Goaziou 2c453091e4
gnu: wireshark: Update to 2.2.2.
* gnu/packages/networking.scm (wireshark): Update to 2.2.2.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 16:33:55 +08:00
Nicolas Goaziou ce53f5cbf0
gnu: giac-xcas: Update to 1.2.2-103
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-103.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 16:28:58 +08:00
Muriithi Frederick Muriuki 6689c636d0
gnu: Add ruby-net-http-digest-auth.
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): New variable.
2016-11-19 15:16:19 +10:00
Ben J Woodcroft 4af80275a8
gnu: ruby-2.2: Update to 2.2.6.
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.6.
2016-11-19 07:48:01 +10:00
ng0 175d626478
gnu: mps-youtube: Disable tests.
* gnu/packages/video.scm (mps-youtube): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:16:48 -05:00
ng0 ed3fee5f7b
gnu: python-pafy: Disable tests.
* gnu/packages/python.scm (python-pafy): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:16:48 -05:00
Petter 01278f16a9
gnu: Add xcalib.
* gnu/packages/xdisorg (xcalib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:05:59 -05:00
Ludovic Courtès c2662820f3
gnu: emacs-org: Update to 20161102.
* gnu/packages/emacs.scm (emacs-org)[source]: Switch to elpa.gnu.org so
'guix refresh' can pick it up.  Update to 20161102.
2016-11-18 18:28:03 +01:00
Ludovic Courtès 8134dc1f74
gnu: guile@2.0.13: Fix non-determinism issue in REPL server test.
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
2016-11-18 18:28:02 +01:00
Danny Milosavljevic 651049789f
gnu: xonsh: Update to 0.4.7.
* gnu/packages/shells.scm (xonsh): Update to 0.4.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-18 17:02:30 +01:00
宋文武 d7da76044b
gnu: opensmtpd: Build man pages.
* gnu/packages/mail.scm (opensmtpd)[native-inputs]: Add groff.
2016-11-18 22:19:49 +08:00
Efraim Flashner 4d17fe2ad3
gnu: python-gst: Update to 1.10.1.
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.10.1.
2016-11-18 14:26:40 +02:00
Efraim Flashner 950548b0f7
gnu: gst-libav: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.1.
2016-11-18 14:26:40 +02:00
Efraim Flashner 2e747a3ff6
gnu: gst-plugins-ugly: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.1.
2016-11-18 14:26:39 +02:00
Efraim Flashner 95e89a4510
gnu: gst-plugins-bad: Update to 1.10.1 (Fixes security issues).
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.1.
2016-11-18 14:26:39 +02:00
Efraim Flashner faa3c13920
gnu: gst-plugins-good: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.1.
2016-11-18 10:01:29 +02:00
Efraim Flashner de0e591a53
gnu: gst-plugins-base: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.1.
2016-11-18 10:01:29 +02:00
Efraim Flashner 28e3663134
gnu: gstreamer: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.1.
2016-11-18 10:01:17 +02:00
Leo Famulari 175c910380
gnu: mpop: Use 'sourceforge' mirror.
This is a followup to commit 5837e69936.

* gnu/packages/mail.scm (mpop)[source]: Use 'sourceforge' mirror.
2016-11-17 15:56:06 -05:00
Arun Isaac 5837e69936
gnu: mpop: Update to 1.2.6.
* gnu/packages/mail.scm (mpop): Update to 1.2.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-17 17:45:38 +01:00
Efraim Flashner e5294500d6
gnu: obs: Update to 0.16.5.
* gnu/packages/video.scm (obs): Update to 0.16.5.
2016-11-17 07:26:20 +02:00
Efraim Flashner ca569eb89f
gnu: aria2: Update to 1.29.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.29.0.
2016-11-17 07:26:20 +02:00
Mark H Weaver 2f63e087fe
Revert "gnu: icecat: Enable gtk3 support."
This reverts commit eaf72e218e.

IceCat misbehaves with gtk+3, most notably the scroll bar handles are
invisible.  Here we revert back to gtk+2 until these problems can be
addressed.
2016-11-16 22:34:11 -05:00
Eric Bavier fe047e1380
gnu: Add Handbrake.
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-16 20:58:12 -06:00
Leo Famulari 1339a8ed1c
gnu: libtiff: Fix some buffer overflows.
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-16 19:59:28 -05:00
Leo Famulari 7cea56e2ac
gnu: libtiff: Fix CVE-2016-9297.
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-16 19:59:24 -05:00
Efraim Flashner d87c201f96
gnu: jasper: Update to 1.900.29.
* gnu/packages/image.scm (jasper): Update to 1.900.29.
[inputs]: Add libjpeg.
2016-11-16 22:06:33 +02:00
Mark H Weaver 9cdb405b81
gnu: icecat: Remove unneeded patch.
This is a followup to commit 1a87aa7567.

* gnu/packages/gnuzilla.scm (icecat)[sources][patches]: Remove patch for
CVE-2016-5296, which is for a bundled copy of pixman that is
subsequently deleted by a snippet.
2016-11-16 14:14:25 -05:00
John Darrington d9804e5011
gnu: util-linux: Add current system profile to fs search path.
* gnu/packages/linux.scm (util-linux)[arguments]: Add
"--enable-fs-paths-default=/run/current-system/profile/sbin"
to configure-flags.
2016-11-16 20:13:41 +01:00
Marius Bakke d3e5dc0a44
gnu: perl-dbd-mysql: Update to 4.039 [Fixes CVE-2016-1249].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.039.
[source]: Update CPAN URI.
2016-11-16 18:33:57 +00:00
Leo Famulari 1d87fdf531
gnu: ncmpcpp: Update to 0.7.7.
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.7.
2016-11-16 13:09:36 -05:00
Leo Famulari 0ffa8b8e7b
gnu: shotwell: Update to 0.25.0.1.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.1.
2016-11-16 13:09:36 -05:00
Mark H Weaver 1a87aa7567
gnu: icecat: Add fixes from Firefox ESR 45.5.0.
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.

* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0.  Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-16 13:04:02 -05:00
Mark H Weaver 56ac2bf442
gnu: pixman: Add fix for CVE-2016-5296.
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
2016-11-16 13:03:56 -05:00
宋文武 eb4b3e4bef
gnu: opensmtpd: Update to 6.0.2p1.
* gnu/packages/mail.scm (opensmtpd): Update to 6.0.2p1.
[arguments]: Pass '--with-path-sock=/var/run' to #:configure-flags.
2016-11-16 21:00:40 +08:00
Mark H Weaver d55019136e
gnu: linux-libre: Update to 4.8.8.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.8.
2016-11-16 00:08:19 -05:00
Mark H Weaver 7d154949c9
gnu: linux-libre@4.4: Update to 4.4.32.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.32.
2016-11-16 00:06:46 -05:00
Hartmut Goebel d46491779e
gnu: python-awscli: fix inputs.
* gnu/packages/python.scm (python-awscli): [inputs] change to
  [native-inputs].
2016-11-15 22:36:22 +01:00
Hartmut Goebel 8fa6890b6c
gnu: python-botocore: fix inputs.
* gnu/packages/python.scm (python-botocore): [inputs] change to
  [native-inputs].
2016-11-15 22:36:21 +01:00
Hartmut Goebel 05e2e4cf00
gnu: python-pip: fix inputs.
* gnu/packages/python.scm (python-pip): [inputs] change to
  [native-inputs].
2016-11-15 22:36:21 +01:00
Hartmut Goebel e62600feb6
gnu: python2-ipython: fix inputs.
* gnu/packages/python.scm (python2-ipython): [inputs] change to
  [native-inputs].
2016-11-15 22:36:20 +01:00
Hartmut Goebel 5b1416d983
gnu: python-betamax: fix inputs.
* gnu/packages/python.scm (python-betamax): [inputs] change to
  [propagated-inputs].
2016-11-15 22:36:19 +01:00
Hartmut Goebel 1b5241c515
gnu: python-scikit-learn: Remove useless property "python2-variant".
The Python 2 packages does not change the definition, thus the
propery is useless.

* gnu/packages/python.scm (python-scikit-learn): [properties]:
  Remove  "python2-variant". (python2-scikit-learn): Remove
  now needless "strip-python2-variant".
2016-11-15 22:36:18 +01:00
Hartmut Goebel bac23672ee
gnu: python-tables: Remove python byte-code files from source.
* gnu/packages/python.scm (python-tables)[source]: Add snippet.
2016-11-15 22:36:18 +01:00
Hartmut Goebel b9c8ccce04
gnu: python-flake8-2.2.4: Remove python byte-code files from source.
* gnu/packages/python.scm (python-flake8-2.2.4)[source]: Add snippet.
2016-11-15 22:36:17 +01:00
Hartmut Goebel 011271c769
gnu: python-flake8: Remove python byte-code files from source.
* gnu/packages/python.scm (python-flake8)[source]: Add snippet.
2016-11-15 22:36:09 +01:00
Hartmut Goebel bac6816879
gnu: python-pytest-django: Remove needless propagated input "python-py".
This is already propagated by python-pytest.

* gnu/packages/python.scm (python-pytest-django) [propagated-inputs]:
  Remove python-py.
2016-11-15 22:32:02 +01:00
Hartmut Goebel de5bc89093
gnu: python2-pbcore: Fix inputs:
* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
  [propagated-inputs]. [native-inputs]: Remove python-docutils, which
  comes with sphinx. [former propagated-inputs]: move all (which is only
  pyxb) to [inputs].
2016-11-15 22:32:01 +01:00
Hartmut Goebel 54c85e12fd
gnu: python2-warpedlmm: Remove phase remove-bin-directory.
This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)

* gnu/packages/bioinformatics.scm (python2-warpedlmm)
  [modify-phases] Remove, since remove-bin-directory was the only
  modification here.
2016-11-15 22:32:00 +01:00
Hartmut Goebel 3221207417
gnu: khal: Fix build.
The old one was plain wrong and only worked by luck since the old
python build system did manipulate PYTHONPATH.

* gnu/packages/calendar.scm(khal)[phase manpage]: Use
  add-installed-pythonpath.
2016-11-15 22:31:59 +01:00
Hartmut Goebel 632735f215
gnu: python-testlib: Remove useless self-defined phase "unpack".
Unzipping is now done by standard-phase "unpack" automatically.

* gnu/packages/python.scm (python-testlib, python2-testlib)[phases] No longer
  replace "unpack".
2016-11-15 22:31:59 +01:00
Hartmut Goebel 251ed7f2fe
gnu: python-sphinxcontrib-newsfeed: Remove needless input.
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed) [propagated-inputs]:
  Remove python-docutils, already porpagated by python-sphinx.
2016-11-15 22:31:58 +01:00
Hartmut Goebel 38ceb106bd
gnu: python-nautilus: Correct inputs
* gnu/packages/python.scm(python-nautilus, python2-nautilus):
  [propagated-inputs] remove python-graphql-core, python-graphql-relay,
  python-requests: not listed and already propagated by others. Remove
  pycparser: not listed, not used in source. Move python-nose2 to
  [native-inputs] (used for tests only).
2016-11-15 22:31:57 +01:00
Hartmut Goebel 4e0969686c
gnu: python-freezegun: Correct input.
* u/packages/python.scm(python-freezegun)[native-inputs] move
  python-dateutils-2 to [propagated-inputs].
2016-11-15 22:31:56 +01:00
Hartmut Goebel fd1d6de729
gnu: python-consul: Correct inputs.
* gnu/packages/python.scm(python-consul)[native-inuts] move python-requests
  and python-six to [propagated-inputs].
2016-11-15 22:31:55 +01:00
Hartmut Goebel 2c199b5527
gnu: python-prompt-toolkit: Correct inputs
* gnu/packages/python.scm(python-prompt-toolkit)[native-inputs] move
  python-six to [propagated-inputs]. Remove now empty [native-inputs].
2016-11-15 22:31:55 +01:00
Hartmut Goebel d8ea5f2f27
gnu: python-responses: Correct inputs
* gnu/packages/python.scm(python-responses)[native-inputs] move python-cookies
  to [propagated-inputs]
2016-11-15 22:31:54 +01:00
Hartmut Goebel a0a0985978
gnu: python-sphinxcontrib-programoutput: Remove needless input.
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinxcontrib-programoutput)
  [propagated-inputs]: Remove python-docutils.
2016-11-15 22:31:53 +01:00
Hartmut Goebel 47c7dc4a3f
gnu: python-sphinx-repoze-autointerface: Remove needless input.
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinx-repoze-autointerface)
  [propagated-inputs]: Remove python-docutils.
2016-11-15 22:31:52 +01:00
Hartmut Goebel 06f1d73ed4
gnu: python-celery: Remove needless inputs.
These are indirect requirements and propagated by python-kombu.

* gnu/packages/python.scm(python-celery)[propagated-inputs] Remove python-amqp
  and python-anyjson.
2016-11-15 22:31:51 +01:00
Hartmut Goebel f7989b8bb0
gnu: Remove some outdated comments.
These comments were about setuptools used at runtime for pkg_resources.

* gnu/packages/python.scm: Remove some outdated comments.
2016-11-15 22:31:50 +01:00
Hartmut Goebel 7ba07edfb1
gnu: python-tox: Update FIXME comments.
* gnu/packages/python.scm(python-tox)[arguments]: Update FIXME
  comment. [inputs]: Add FIXME comment.
2016-11-15 22:31:49 +01:00
Hartmut Goebel 8322749a1c
gnu: python-urllib3: update comment.
* gnu/packages/python.scm(python-urllib3)[propagated-inputs]: Update comment.
2016-11-15 22:31:49 +01:00
Hartmut Goebel b9fc496ff6
gnu: python-wsgi-intercept: Correct inputs.
* gnu/packages/python.scm(python-wsgi-intercept): [native-inputs]: move
  python-six to [propagated-inputs].  [propagated-inputs] move
  python-httplib2, python-requests to [native-inputs].
2016-11-15 22:31:48 +01:00
Hartmut Goebel a5333f7c61
gnu: python-websocket-client: Correct inputs.
* gnu/packages/python.scm (python-websocket-client)[native-inputs] change to
  [propagated-inputs], remove a wrong comment.
2016-11-15 22:31:47 +01:00
Hartmut Goebel fd8e23b7b3
gnu: python-zope-security: Correct inputs.
* gnu/packages/python.scm(python-zope-security)[native-inputs] New element,
  move python-zope-component, python-zope-configuration, python-zope-location,
  python-zope-testrunner, python-zope-testing here.
2016-11-15 22:31:46 +01:00
Hartmut Goebel 861f70c9da
gnu: python-configobj: Correct inputs.
* gnu/packages/python.scm(python-configobj)[native-inputs] change to
  [propagated-inputs].
2016-11-15 22:31:46 +01:00
Hartmut Goebel d27f176a72
gnu: python-zope-location: Correct inputs.
* gnu/packages/python.scm(python-zope-location)[native-inputs] change to
  [propagated-inputs].
2016-11-15 22:31:45 +01:00
Hartmut Goebel 38d480a8a6
gnu: python-zope-interface: Correct inputs.
* gnu/packages/python.scm(python-zope-interface)[propagated-inputs] change to
  [native-inputs].
2016-11-15 22:31:44 +01:00
Hartmut Goebel 2887700e4d
gnu: python-pathpy: Build documentation.
* gnu/packages/python.scm (python-pathpy, python2-pathpy)
  [output] Add output "doc".
  [native-inputs]: Add python-sphinx and python-rst.linker
  [build-doc], [install-doc]: New build phases.
2016-11-15 22:31:43 +01:00
Hartmut Goebel fe94cf0cdd
gnu: Add python-rst.linker, python2-rst.linker.
* gnu/packages/python.scm (python-rst.linker, python2-rst.linker): New
  variables.
2016-11-15 22:31:43 +01:00
Hartmut Goebel 213d1745c6
gnu: python-numpydoc: Correct inputs.
* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
  [native-inputs]: Remove python-docutils. Move python-shpinx to
  [propagated-inputs].
2016-11-15 22:31:42 +01:00
Hartmut Goebel cf8124b017
gnu: python-redis: Remove unused input.
* gnu/packages/python.scm (python-redis, python2-redis) Comment out
  [native-inputs] since these are used only for running tests, which
  is disabled since it requires a Redis server.
2016-11-15 22:31:41 +01:00
Hartmut Goebel 1273359455
gnu: python2-scikit-image: Remove needless native-input and inheritance.
Remove last additional [native-inputs] python-mock, thus there is no
need to inherit python-scikit-image package. Simply use
package-with-python2.

* gnu/packages/python.scm: (python-scikit-image): [properties]: Remove
  python2-variant. (python2-scikit-image) Use simply
  "package-with-python2" after removing last [native-inputs] python-mock.
2016-11-15 22:31:40 +01:00
Hartmut Goebel ddd1dc3d2d
gnu: python2-scikit-image: Remove needless propagated-input.
* gnu/packages/python.scm: (python2-scikit-image)
  [propagated-inputs]: Remove python-pytz, it does not occur anywhere in
  the source.
2016-11-15 22:31:39 +01:00
Hartmut Goebel b83e23337b
gnu: python-scikit-image: Correct inputs.
* gnu/packages/python.scm: (python-scikit-image, python2-scikit-image)
  [propagated-inputs]: Move python-numpy and python-six to [native-inputs].
  Add comment.
2016-11-15 22:31:39 +01:00
Hartmut Goebel 9fbe7b2bca
gnu: python-blinker: No longer disable tests.
The package does not provide tests, but there is no need to disable them.
Having them enabled allows running them if some newer version may provide
tests.

* gnu/package/python.scm (python-blinker, python2-blinker):
  [arguments]: Remove.
2016-11-15 22:31:38 +01:00
Hartmut Goebel 7c88bcf4bb
gnu: python-feedgenerator: Remove python byte-code files from source.
* gnu/packages/python.scm (python-feedgenerator, python2-feedgenerator)
  [source]: Add snippet.
2016-11-15 22:31:37 +01:00
Hartmut Goebel f052ec9a50
gnu: python-joblib: Add comment.
* gnu/packages/python.scm (python-joblib): Add comment.
2016-11-15 22:31:36 +01:00
Hartmut Goebel 6aa5f1ca24
gnu: python-joblib: Remove python byte-code files from source.
* gnu/packages/python.scm (python-joblib, python2-joblib)[source]:
  Add snippet.
2016-11-15 22:31:36 +01:00
Hartmut Goebel bb06aa3446
gnu: python-oauthlib, python-oauthlib2: Correct inputs.
* gnu/packages/python.scm (python-oauthlib) [propagated-inputs] Move all to
  [native-inputs]. [native-inputs]: Remove python-mock, python-coverage.
  (python2-oauthlib)[native-inputs]: Add python2-mock.
2016-11-15 22:31:35 +01:00
Hartmut Goebel 130fe99410
gnu: python-pyjwt: Add missing inputs and enable test-suite.
* gnu/packages/python.scm (python-pyjwt) [native-inputs]: Add
  python-pytest and python-pytest-cov. [arguments]. Remove.
2016-11-15 22:31:34 +01:00
Hartmut Goebel f78e1c27ef
gnu: python-cov-core: Fix imports.
* gnu/packages/python.scm (python-cov-core) [inputs]: change
  to [propagated-inputs].
2016-11-15 22:31:33 +01:00
Hartmut Goebel 25b2c47d75
gnu: python-statsmodels: Fix build
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
2016-11-15 22:31:33 +01:00
Hartmut Goebel d5e41cf28c
gnu: pytest-mock: remove needless propagated input "python-py".
This is not listed as an requirement and is already propagated by
python-pytest.

* gnu/packages/python.scm (python-pytest-mock, python2-pytest-mock):
  [propagated-inputs]: Remove python-py.
2016-11-15 22:31:32 +01:00
Hartmut Goebel 8e73d3baab
gnu: python-testscenarios: remove needless input "mimetools".
This does not occur in the source.

* gnu/packages/python.scm (python-testscenarios, python2-testscenarios)
  [propagated-inputs]: Remove python-mimeparse.
2016-11-15 22:31:31 +01:00
Hartmut Goebel e0ed457944
gnu: python-setuptools: remove pre-built binaries from source.
These are used to build self-extracting installers for Windows.

* gnu/packages/python.scm (python-setuptools, python2-setuptools) [source]:
  Add snippet to delete *.exe files.
2016-11-15 22:31:30 +01:00
Hartmut Goebel c4516ad206
gnu: python-pytest-xdist: Remove needless input python-apipkg.
* gnu/packages/python.scm (python-pytest-xdist): Remove input
  python-apipkg.
2016-11-15 22:31:29 +01:00
Hartmut Goebel b52ad3714a
gnu: python-subunit, python-testrepository: Fix inputs
* gnu/packages/python.scm (python-subunit, python2-subunit):
  [propagated-inputs]:: Add python-extras, remove python-testtools, move
  python-testscenarios to [native-inputs].  (python-testrepository,
  python2-testrepository): [native-inputs] move python-fixtures and
  python-subunit to [propagated-inputs]
2016-11-15 22:31:29 +01:00
Hartmut Goebel 521b77729e
gnu: python-scripttest: Correct inputs.
python-pytest is only required for testing, not at run-time.

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [propagated-inputs] Move python-pytest to [native-inputs].
2016-11-15 22:31:28 +01:00
Hartmut Goebel abcc7a0eb9
gnu: python-pandas: Fix build.
* gnu/packages/python.scm (python-pandas): Add python-cython to
  native-inputs.
2016-11-15 22:31:27 +01:00
Hartmut Goebel e116d100fd
gnu: openstack: Correct inputs.
* gnu/packages/openstack.scm (python-os-testr) Propagate input
  python-subunit, change all other inputs to native-inputs.
  (python-mox3): Remove needless input python-six.
  (python-stevedore, python-requests-mock): Move python-pbr to
  native-inputs.
2016-11-15 22:31:27 +01:00
Hartmut Goebel 48160559a1
gnu: thefuck: Fix build.
Requires setuptools >= 17.1 due to some features used, while our
python currently only includes 12.0.

* gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
2016-11-15 22:31:26 +01:00
Hartmut Goebel a08a835034
gnu: vdirsyncer: Fix build by setting correct PYTHONPATH.
For thus, use add-installed-pythonpath.

* gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using
  add-installed-pythonpath.
2016-11-15 22:31:25 +01:00
Hartmut Goebel eee5cd0440
gnu: python-ipython: Fix build.
* gnu/packages/python.scm (python-ipython, python2-ipython) [check,
  install-doc] set PYTHONPATH prior to running tests.
2016-11-15 22:31:24 +01:00
Hartmut Goebel d548e6aa06
gnu: python-scipy: Fix build.
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath.  Add
  dummy newlines character to string to make emacs happy.
2016-11-15 22:31:23 +01:00
Hartmut Goebel ca33a3ad97
gnu: python-matplotlib: Fix build.
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
  inputs. [install-doc] set PYTHONPATH prior to building docs.
2016-11-15 22:31:23 +01:00
Hartmut Goebel 2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build.
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
  modify-phases, add dummy newlines character to string to make emacs happy,
  set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
  PYTHONPATH prior to building docs.
2016-11-15 22:31:22 +01:00
Hartmut Goebel 9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges.
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
2016-11-15 22:31:21 +01:00
Hartmut Goebel b72ac1b54b
gnu: python2-pysnptools: Correct inputs.
dateutil, pytz, and six do not occur in the code.

Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
2016-11-15 22:31:21 +01:00
Hartmut Goebel e408ffc302
gnu: python-zope-testing: Remove needless input.
* gnu/packages.python.scm (python-zope-testing): Remove
  python-zope-interface from native-imports.
2016-11-15 22:31:20 +01:00
Hartmut Goebel 47f77210fc
gnu: python-zope-schema: Add missing inputs.
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
  python-nose to native-inputs.
2016-11-15 22:31:19 +01:00
Hartmut Goebel 05c2fd3685
gnu: python-pytest-flakes: Fix build.
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
2016-11-15 22:31:18 +01:00
Hartmut Goebel 6151120a71
gnu: python-pillow: Fix build.
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
  installed site-package to PYTHONPATH.
2016-11-15 22:31:17 +01:00
Hartmut Goebel 5e1c9d242a
gnu: python-singledispatch: correct inputs.
python-six is only required for conversion, not at run-time

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [inputs] Move python-six to [native-inputs].
2016-11-15 22:31:17 +01:00
Hartmut Goebel d2a8db92fe
gnu: python-pbr: Rework bootstrapping.
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping.  Now we use the same version just without tests and without
test dependencies.

* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
  replace by … (python-pbr-minimal, python2-pbr-minimal).
  (python-pbr) inherit from python-pbr-minimal, adding the requirements for
  testing and building the documentation.
  (python-fixtures) [native-inputs] Use python-pbr-minimal here.
  (python-testrepository): [native-inputs] Add it here, it was a missing
  dependency.
2016-11-15 22:31:16 +01:00
Hartmut Goebel b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs.
python-fixtures is required only for building.

* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
  python-fixtures to [native-inputs].
2016-11-15 22:31:15 +01:00
Hartmut Goebel 424f0a4175
gnu: python-fixture: Enable tests.
* gnu/packages/python.scm (python-fixtures) [arguments] remove
  keyword `#:tests?`.
2016-11-15 22:31:14 +01:00
Hartmut Goebel ae92caddc5
gnu: python-fixture: Correct inputs.
python-pbr is required only for building.

* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
  python-pbr-0.11 to [native-inputs].
2016-11-15 22:31:13 +01:00
Hartmut Goebel 6986669012
gnu: python-hdf5: Correct inputs.
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.

* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
  [propagated-inputs].
2016-11-15 22:31:12 +01:00
Hartmut Goebel 9820a02858
gnu: python-h5py: Remove needless "python2-variant" property.
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
  property. (python2-h5py): Don't strip property "strip-python2-variant".
2016-11-15 22:31:12 +01:00
Hartmut Goebel d9a6e221e2
gnu: python-ccm: Update synopsis and description.
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
2016-11-15 22:31:11 +01:00
Hartmut Goebel e165f137d8
gnu: python-ccm: Add missing input python-psutil.
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
  python-psutil.
2016-11-15 22:31:10 +01:00
Hartmut Goebel ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs.
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.

* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
2016-11-15 22:31:09 +01:00
Hartmut Goebel ce40b38395
gnu: python-pytest-cov: Use upstream options for testing.
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
  by one passing the options found in upstream's tox.ini-file
  to "python setup.py check".
2016-11-15 22:31:08 +01:00
Hartmut Goebel b3e8b4bd0f
gnu: scons: Do not use setuptools for building.
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
2016-11-15 22:31:07 +01:00
Hartmut Goebel f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
  [native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
2016-11-15 22:31:07 +01:00
Hartmut Goebel 328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs.
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.

* gnu/packages/python.scm
  (python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
  python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
  change to [native-inputs].
  (python-flake8, tox) Likewise, add a comment.
  (python-scikit-learn, python-numpy)[native-inputs] New element, move
  python-nose here.
  (python2-kombu)[inputs] change to [native-inputs], use python-kombu's
  package-native-inputs.
2016-11-15 22:31:06 +01:00
Hartmut Goebel 482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs
* gnu/packages/openstack.scm
  (python-os-client-config)[inputs] change to
  [native-inputs]. [propagated-inputs]: New element, move python-appdirs,
  python-pyyaml here.
  (python-git-review)[propagated-inputs]: New element, move python-requests
  here.
* gnu/packages/python.scm
  (python-rpy2)[propagated-inputs]: New element, move python-six here.
  (python-xcffib)[inputs] move python-six to [propagated-inputs].
  (python-flake8)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-pytest)[propagated-inputs]: New element, move python-py here.
  (python-tox)[propagated-inputs]: New element, move all inputs except of
  python-pytest here.
  (python-botocore)[propagated-inputs]: New element, move python-dateutil,
  python-docutils, python-jmespath here.
  (awscli)[propagated-inputs]: New element, move python-colorama,
  python-botocore, python-s3transfer, python-docutils, python-rsa here.
  (python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
  python-lxml here.
2016-11-15 22:31:05 +01:00
Hartmut Goebel dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs.
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].

* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
  changed to [propagated-inputs].
2016-11-15 22:31:04 +01:00
Hartmut Goebel e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs.
This patch contains the changes where all [inputs] are changed to
[native-inputs].

* gnu/packages/python.scm (python-pytest, python-fixtures,
  python-testrepository, python-virtualenv): All [inputs] are changed to
  [native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
  python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
  python-oslo.i18n, python-oslo.log, python-oslo.serialization,
  python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
2016-11-15 22:31:03 +01:00
Hartmut Goebel f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs.
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]

* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
  python-babel, python-keyring python-pandas, python-tzlocal,
  python-parse-type, python-nose2, python-pytest, python-pytest-mock,
  python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
  python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
  python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
  pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
  python-tornado, python2-tornado, python-debian, python-execnet,
  python-pytest-cache, pytest-localserver, python-clint, python-rply,
  python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
  python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
  python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
  python-schematics, python-url, python2-url, python-freezegun,
  python-glances, python-graphql-core, python-graphql-relay, python-graphene,
  python-nautilus, python-s3transfer): All [inputs] become
  [propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.

SQACH all become propagated
2016-11-15 22:31:03 +01:00
Hartmut Goebel b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
Hartmut Goebel d8013ee221
gnu: Remove needless inputs python-pip and python2-pip.
This is installed together with Python 3 anyway and for our build
of Python 2.

* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
  "python2-pip". (python-reportlab)[properties]: remove "python2-variant".
2016-11-15 22:31:01 +01:00
Hartmut Goebel f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b)
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).

* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
  from a Python 3 package if adding python-setuptools respective
  python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
  been the sole reason for inheriting. Remove now needless [properties]
  "python2-variant" where applicable.
  (python2-lockfile, python2-keyring, python2-dateutil-2,
  python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
  python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
  python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
  python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
  python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
  python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
  python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
  python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
  python2-flask, python2-cookies, python2-responses, python2-future,
  python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
  python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
  python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
  python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
  python2-pytest-pep8, python2-pytest-flakes, python2-glances,
  python2-betamax, python2-file, python2-flask-babel, python2-furl,
  python2-imagesize python2-orderedmultidict, python2-pycodestyle,
  python2-vcversioner, python2-graphql-core, python2-graphql-relay,
  python2-validictory): Remove neesless input "python2-setuptools", don't
  inherit, don't call strip-python2-variant.
  (python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
  python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
  python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
  python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
  python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
  python-execnet, python-pytest-cache, python-wtforms, python-mako,
  python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
  python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
  python-psycopg2, python-vobject, python-flask, python-cookies,
  python-responses, python-future, python-ply, python-wcwidth,
  python-prompt-toolkit, python-jedi, python-requests-oauthlib,
  python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
  python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
  python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
  python-file, python-flask-babel, python-furl, python-imagesize,
  python-orderedmultidict, python-pycodestyle, python-vcversioner,
  python-graphql-core, python-graphql-relay, python-validictory): Remove
  "python2-variant" property.
2016-11-15 22:29:00 +01:00
Hartmut Goebel 5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
Hartmut Goebel 00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
Hartmut Goebel f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.

* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
  [propagated-inputs] where python-setuptools or python2-setuptools are the
  sole entries. Remove python-setuptools and python2-setuptools listed on a
  line by its own from [inputs], [native-inputs] and [propagated-inputs].

* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
  python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
  crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
  pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
  python-os-testr, python2-os-testr,
  python-stevedore, python2-stevedore,
  python-tempest-lib, python2-tempest-lib,
  python-oslo.log, python2-oslo.log,
  python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
  python-babel, python2-babel,
  python-parse-type,
  python-pytest, python2-pytest,
  python-scripttest, python2-scripttest,
  python-testtools, python2-testtools,
  python-testscenarios, python2-testscenarios,
  python-subunit, python2-subunit,
  python-pbr-0.11,
  python-pbr, python2-pbr,
  python-testrepository, python2-testrepository,
  behave,
  python-wheel, python2-wheel,
  python-requests, python2-requests,
  python-jsonschema, python2-jsonschema,
  python-pyjwt, python2-pyjwt,
  python-virtualenv, python2-virtualenv,
  python-jinja2, python2-jinja2,
  python-joblib, python2-joblib,
  python-sphinx, python2-sphinx,
  python-feedgenerator, python2-feedgenerator,
  python-scikit-image, python2-scikit-image,
  python-redis, python2-redis,
  python2-fastlmm,
  python-numpydoc, python2-numpydoc,
  python-matplotlib, python2-matplotlib,
  python2-pysnptools,
  python-rpy2, python2-rpy2,
  python-pillow, python2-pillow,
  python-pycparser, python2-pycparser,
  python-cffi, python2-cffi,
  python-cairocffi, python2-cairocffi,
  python-drmaa, python2-drmaa,
  python-pathpy, python2-pathpy,
  python-simplegeneric, python2-simplegeneric,
  python-ipython, python2-ipython,
  python-apsw, python2-apsw,
  python-lxml, python2-lxml,
  python-networkx, python2-networkx,
  python-pyzmq, python2-pyzmq,
  python-mccabe, python2-mccabe,
  python-mccabe-0.2.1,
  python-flake8, python2-flake8,
  python-flake8-2.2.4,
  python-mistune, python2-mistune,
  python-ptyprocess, python2-ptyprocess,
  python-llfuse, python2-llfuse,
  python-webob, python2-webob,
  python-xlrd, python2-xlrd,
  python-tables, python2-tables,
  python-pip, python2-pip,
  python-libarchive-c, python2-libarchive-c,
  python-docopt, python2-docopt,
  python-pyrfc3339, python2-pyrfc3339,
  python-configobj, python2-configobj,
  python-clint, python2-clint,
  python-rply, python2-rply,
  python2-rpython,
  python-widgetsnbextension, python2-widgetsnbextension
  jupyter,
  python-jupyter-console, python2-jupyter-console,
  python-hy, python2-hy,
  python-urllib3, python2-urllib3,
  python-rsa, python2-rsa,
  python-tox, python2-tox,
  python2-hypothesis,
  python-paste, python2-paste,
  python-pastescript, python2-pastescript,
  python2-unicodecsv,
  python-pkgconfig, python2-pkgconfig,
  python2-rope,
  python-sqlparse, python2-sqlparse,
  python-gevent, python2-gevent,
  python-tabulate, python2-tabulate,
  python-arrow, python2-arrow,
  python-cleo, python2-cleo,
  python-fake-factory, python2-fake-factory,
  ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15 22:27:31 +01:00
Ricardo Wurmus 86f4e9d76a
gnu: fftw: Build threads library.
* gnu/packages/algebra.scm (fftw)[arguments]: Add "--enable-threads" to
configure flags.
2016-11-15 22:09:25 +01:00
Hartmut Goebel 5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.

* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
  [native-inputs] and [propagated-inputs] where python-setuptools or
  python2-setuptools are the sole entries. Remove python-setuptools and
  python2-setuptools listed on a line by its own from [inputs],
  [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
  multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
  python-django-simple-math-captcha, python2-django-simple-math-captcha):
  Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
  python-debtcollector, python2-debtcollector,
  python-mox3, python2-mox3,
  python-os-client-config, python2-os-client-config,
  python-oslo.config, python2-oslo.config,
  python-oslo.context, python2-oslo.context,
  python-oslo.i18n, python2-oslo.i18n,
  python-oslo.serialization, python2-oslo.serialization,
  python-oslosphinx, python2-oslosphinx,
  python-oslotest, python2-oslotest,
  python-oslo.utils, python2-oslo.utils,
  python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-15 21:58:44 +01:00
Hartmut Goebel f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a)
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.

* gnu/packages/python.scm (python-psutil, python2-psutil,
  python-py-bcrypt, python2-py-bcrypt,
  python-paramiko, python2-paramiko,
  python-httplib2, python2-httplib2,
  python-ecdsa, python2-ecdsa,
  python-ccm, python2-ccm,
  python2-backport-ssl-match-hostname,
  python-pycrypto, python2-pycrypto,
  python-six, python2-six,
  python-dateutil, python2-dateutil,
  python2-mechanize,
  python-extras, python2-extras,
  python-mimeparse, python2-mimeparse,
  python-nose, python2-nose,
  python-nose2, python2-nose2,
  python-unittest2, python2-unittest2,
  python-py, python2-py,
  python-testresources, python2-testresources,
  python-fixtures-0.3.16,
  python-fixtures, python2-fixtures,
  python-coverage, python2-coverage,
  python-discover, python2-discover,
  python-exif-read, python2-exif-read,
  python-pyld, python2-pyld,
  python-certifi, python2-certifi,
  python-click, python2-click,
  python-vcversioner, python2-vcversioner,
  python-unidecode, python2-unidecode,
  python-pyyaml, python2-pyyaml,
  python-markupsafe, python2-markupsafe,
  python-pystache, python2-pystache,
  python-docutils, python2-docutils,
  python-pygments, python2-pygments,
  python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
  python-blinker, python2-blinker,
  python-rq, python2-rq,
  python-numpy, python2-numpy,
  python-distutils-extra, python2-distutils-extra,
  python2-elib.intl,
  python-pillow, python2-pillow,
  python-xcffib, python2-xcffib,
  python-decorator, python2-decorator,
  python-gridmap, python2-gridmap,
  python-pickleshare, python2-pickleshare,
  python-isodate, python2-isodate,
  python-html5lib, python2-html5lib,
  python2-cssutils,
  python-cssselect, python2-cssselect,
  python-netifaces, python2-netifaces,
  python-sympy, python2-sympy,
  python-testlib, python2-testlib,
  python2-xlib,
  python-singledispatch, python2-singledispatch,
  python-backports-abc, python2-backports-abc,
  python-pep8, python2-pep8,
  python-pyflakes, python2-pyflakes,
  python-fonttools, python2-fonttools,
  python-ly,
  python-appdirs, python2-appdirs,
  python-netaddr, python2-netaddr,
  python-wrapt, python2-wrapt,
  python-iso8601, python2-iso8601,
  python-monotonic, python2-monotonic,
  python-prettytable, python2-prettytable,
  python-pyasn1-modules, python2-pyasn1-modules,
  python-idna, python2-idna,
  python-pretend, python2-pretend,
  python-cryptography-vectors, python2-cryptography-vectors,
  python-cryptography, python2-cryptography,
  python-pyopenssl, python2-pyopenssl,
  python-debian, python2-debian,
  python-chardet, python2-chardet,
  python-zope-event, python2-zope-event,
  python-zope-i18nmessageid, python2-zope-i18nmessageid,
  python-websocket-client, python2-websocket-client,
  python-args, python2-args,
  python-astor, python2-astor,
  python2-functools32,
  python2-futures,
  python2-promise,
  python-colorama, python2-colorama,
  python-pluggy, python2-pluggy,
  python-jmespath, python2-jmespath,
  python-botocore, python2-botocore,
  awscli,
  python-pytest-subtesthack, python2-pytest-subtesthack,
  python-pastedeploy, python2-pastedeploy,
  python-magic, python2-magic,
  python2-s3cmd,
  python2-bz2file,
  python-cysignals, python2-cysignals,
  python-py3status,
  python-tblib, python2-tblib,
  python-greenlet, python2-greenlet,
  python-twisted, python2-twisted,
  python-kazoo, python2-kazoo,
  python-pykafka, python2-pykafka,
  python2-jsonrpclib,
  python-chai, python2-chai,
  python-inflection, python2-inflection,
  python-pylev, python2-pylev,
  python-lazy-object-proxy, python2-lazy-object-proxy,
  python-dnspython, python2-dnspython,
  python-email-validator, python2-email-validator,
  python-ukpostcodeparser, python2-ukpostcodeparser,
  python-pyaml, python2-pyaml,
  python-flexmock, python2-flexmock,
  python-orator, python2-orator,
  python-bleach, python2-bleach,
  python-ipywidgets, python2-ipywidgets,
  python-nbconvert, python2-nbconvert,
  python-nbformat, python2-nbformat,
  python-axolotl-curve25519, python-axolotl2-curve25519,
  python-axolotl, python2-axolotl,
  python-nautilus, python-s3transfer): Remove python-setuptools and
  python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
  Remove [inputs], [native-inputs] and [propagated-inputs] where
  python-setuptools or python2-setuptools were the sole entry.
2016-11-15 21:54:58 +01:00
ng0 e1b0b8f5b7
gnu: Fix name for ng0.
* gnu/packages/gnupg.scm: Change name in copyright header.
2016-11-15 14:36:58 -05:00
Tobias Geerinckx-Rice bb6e641588
gnu: Add httptunnel.
* gnu/packages/web.scm (httptunnel): New variable.
2016-11-15 20:27:14 +01:00
Ricardo Wurmus 84590149e6
gnu: hisat: Fix typo.
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
2016-11-15 20:21:08 +01:00
Ricardo Wurmus 49c2665f7b
gnu: Add pcb-rnd.
* gnu/packages/engineering.scm (pcb-rnd): New variable.
2016-11-15 20:21:03 +01:00
Hartmut Goebel 15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15 17:37:48 +01:00
Hartmut Goebel aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2.
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
  configure-flags.
* doc/guix.texi (Python Modules): Document it.
2016-11-15 17:37:40 +01:00
Efraim Flashner b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
2016-11-15 15:25:15 +02:00
Efraim Flashner f5a077b10f
gnu: octave: Update to 4.2.0.
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
Efraim Flashner fccab9931c
gnu: parallel: Update to 20161022.
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
2016-11-15 11:45:53 +02:00
Efraim Flashner 6312043ca5
gnu: libcdio: Update to 0.94.
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
2016-11-15 11:13:24 +02:00
Efraim Flashner 3ded2761ab
gnu: gvpe: Update to 3.0.
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
2016-11-15 11:06:15 +02:00
Efraim Flashner 336f830961
gnu: cryptsetup: Update to 1.7.3.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
2016-11-15 09:45:37 +02:00
Efraim Flashner 538fe01934
gnu: python-vcversioner: Update to 2.16.0.0.
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-11-15 09:45:28 +02:00
Tobias Geerinckx-Rice 1f781865fb
gnu: fish: Update to 2.4.0.
* gnu/packages/shells.scm (fish): Update to 2.4.0.
2016-11-15 01:17:01 +01:00
Tomáš Čech 028bf3c0b2
gnu: connman: Use localstatedir outside of store.
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
2016-11-15 00:13:29 +01:00
Efraim Flashner 8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'.
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
2016-11-14 22:49:50 +02:00
Efraim Flashner 571ffdebc3
gnu: accountsservice: Update to 0.6.43.
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
2016-11-14 21:02:10 +02:00
Ludovic Courtès a4cb821791
gnu: guix-devel: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855.
2016-11-14 15:39:32 +01:00
Ludovic Courtès 198eac2bca
gnu: guix: Really skip all the container tests.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
2016-11-14 15:39:32 +01:00
Tobias Geerinckx-Rice 88eaed6174
gnu: libpsl: Update to 0.15.0.
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
2016-11-14 14:12:50 +01:00
Efraim Flashner 7ca37da855
gnu: libinput: Enable GUI event tool.
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
2016-11-14 13:06:02 +02:00
Efraim Flashner 73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically.
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
2016-11-14 12:15:40 +02:00
Efraim Flashner 8c5cdf5f20
gnu: libinput: Update to 1.5.1.
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
2016-11-14 12:12:26 +02:00
Efraim Flashner b231b057cd
gnu: wayland-protocols: Update to 1.7.
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
2016-11-14 11:55:01 +02:00
Andy Patterson e66f0dd232
gnu: mpv: Use lua@5.2.
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
2016-11-14 09:03:55 +00:00
Leo Famulari d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524.
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
2016-11-13 17:01:01 -05:00
Leo Famulari 27d7c4e93a
gnu: signify: Update to 20.
* gnu/packages/crypto.scm (signify): Update to 20.
2016-11-13 17:01:01 -05:00
Ludovic Courtès 142530178d
gnu: mailutils: Update to 3.0.
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-11-13 21:12:32 +01:00
Efraim Flashner d81850d438
gnu: guile-ncurses: Update to 2.1.
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
2016-11-13 22:02:05 +02:00
Tobias Geerinckx-Rice 927d850512
gnu: btrfs-progs: Update to 4.8.3.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice 917239ff99
gnu: tidy: Use ‘modify-phases’.
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice 3b0ac79500
gnu: protobuf: Replace dead Google Code home-page.
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
2016-11-13 13:33:59 +01:00
Tobias Geerinckx-Rice 3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
2016-11-13 13:33:59 +01:00
Andy Patterson c25a51d5c6
gnu: clisp: Use readline@6.2.
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:00:44 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Efraim Flashner 15abcabe4e
gnu: Add newsbeuter.
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-12 20:50:48 +02:00
Efraim Flashner c76dab7b36
gnu: Add stfl.
* gnu/packages/ncurses.scm (stfl): New variable.
2016-11-12 20:50:47 +02:00
Alex Sassmannshausen 8883b30165
gnu: Add perl-modern-perl.
* gnu/packages/perl.scm (perl-modern-perl): New variable.
2016-11-12 18:26:28 +01:00
Leo Famulari 5c66314bd9
gnu: libtiff: Fix CVE-2016-9273.
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
2016-11-12 11:05:19 -05:00
Danny Milosavljevic 0a7f17f0e0
gnu: Add python-flask-restplus.
* gnu/packages/python.scm (python-flask-restplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:17:40 +01:00
Danny Milosavljevic 1e6112d89f
gnu: Add python-rednose.
* gnu/packages/python.scm (python-rednose): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:15:08 +01:00
Danny Milosavljevic e2fca4906e
gnu: Add python-termstyle.
* gnu/packages/python.scm (python-termstyle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:10:23 +01:00
Ludovic Courtès 998f9ac56d
gnu: guix: Update development snapshot.
This is a followup to 166ba5b102.

* gnu/packages/package-management.scm (guix-devel): Update to commit
166ba5b102.
2016-11-12 14:49:04 +01:00
Clément Lassieur 4a38422157
gnu: prosody: fix SSL/TLS.
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 13:04:45 +01:00
Ben Woodcroft 8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10.
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
2016-11-11 22:56:13 +10:00
Ben Woodcroft e87dfdee86
gnu: ruby-arel: Update to 7.1.4.
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
2016-11-11 22:48:22 +10:00
Ben Woodcroft 16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1.
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
2016-11-11 22:45:38 +10:00
Ben Woodcroft 81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2.
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
2016-11-11 22:44:03 +10:00
Ben Woodcroft c59491183a
gnu: ruby-rspec-core: Update to 3.5.4.
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
2016-11-11 22:40:39 +10:00
Ben Woodcroft bb4bcb02c2
gnu: bundler: Update to 1.13.6.
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
2016-11-11 22:38:13 +10:00
Ben Woodcroft e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions.  Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-11 22:15:37 +10:00
Ricardo Wurmus 7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus 0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus 83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11 09:08:07 +01:00
Leo Famulari 071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11 01:31:19 -05:00
Leo Famulari 86fc6fe777
gnu: linux-libre: Update to 4.8.7.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
2016-11-11 01:31:15 -05:00
Ludovic Courtès 472fc855bc
gnu: Add guile-aspell.
* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11 00:23:16 +01:00
Ludovic Courtès 2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
2016-11-11 00:23:16 +01:00
Leo Famulari aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10 18:17:50 -05:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
Ricardo Wurmus 3f62fa2b81
gnu: inkscape: Use modify-phases syntax.
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
2016-11-10 18:49:48 +01:00
Marius Bakke 65d2f396f7
gnu: vim: Update to 8.0.0073.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10 17:30:08 +00:00
Ludovic Courtès 9e4e431e04
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c.
2016-11-10 18:01:44 +01:00
Paul Garlick 1c79e0861a
gnu: gmsh: Update to 2.14.1
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
Marius Bakke 1b35fea19f
gnu: milkytracker: Update upstream location.
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.

Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10 16:33:57 +00:00
Leo Famulari 8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
2016-11-10 11:33:20 -05:00
Tobias Geerinckx-Rice f34284abcb
gnu: claws-mail: Update to 3.14.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
2016-11-10 14:30:09 +01:00
Hartmut Goebel 99abcdbd9b
gnu: Add pdfposter.
* gnu/packages/pdf.scm(pdfposter): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel c68e8591d8
gnu: Add python2-pypdf.
* gnu/packages/pdf.scm (python2-pypdf): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel ad5a7d49c3
gnu: Add python-pypdf2.
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
2016-11-10 14:26:04 +01:00
Ludovic Courtès 8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings.
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
2016-11-09 21:24:44 +01:00
Thomas Danckaert 8bb115e0c6
gnu: Add kdevelop-pg-qt.
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Thomas Danckaert 5a16e1c04e
gnu: Add libkomparediff2.
* gnu/packages/kde.scm (libkomparediff2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Ludovic Courtès 28791c1c8d
gnu: hidapi: Fix 'license'.
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
2016-11-09 21:24:44 +01:00
Efraim Flashner 65dccb3a86
gnu: Add vifm.
* gnu/packages/vim.scm (vifm): New variable.
2016-11-09 20:56:36 +02:00
Leo Famulari 0b34b58688
gnu: libxslt: Fix CVE-2016-4738.
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
2016-11-09 10:19:49 -05:00
Efraim Flashner d887f420d2
gnu: postgresql: Update to 9.5.5.
* gnu/packages/databases.scm (postgresql): Update to 9.5.5.
[home-page]: Use https.
2016-11-09 11:39:30 +02:00
Efraim Flashner bc332a638b
gnu: mariadb: Update to 10.1.19.
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
2016-11-09 11:04:36 +02:00
Ludovic Courtès de7da4e5d1
gnu: gnome-calculator: Update to 3.22.2.
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.22.2.
2016-11-09 09:25:18 +01:00
Ludovic Courtès 7894ea6122
gnu: gcc-arm-none-eabi-4.9: Remove non-applicable patch.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)[patches]: Remove
"gcc-arm-bug-71399.patch" from XGCC's patches.
2016-11-08 23:57:29 +01:00
Efraim Flashner e3ec6c806a
gnu: mate-themes: Update to 3.20.9.
* gnu/packages/mate.scm (mate-themes): Update to 3.20.9.
[source]: Update package location.
[inputs]: Remove gtk+-2, add gtk+-3.
[description]: Add note about dual gtk+-2/gtk+-3 support.
2016-11-08 22:53:43 +02:00
Efraim Flashner 27caff1b5d
gnu: mate-menus: Update to 1.16.0.
* gnu/packages/mate.scm (mate-menus): Update to 1.16.0.
[propagated-inputs]: Move glib ...
[inputs]: ... to here.
2016-11-08 22:35:27 +02:00
Efraim Flashner 9927943c30
gnu: mate-desktop: Update to 1.16.1.
* gnu/packages/mate.scm (mate-desktop): Update to 1.16.1.
[arguments]: Build with gtk+-3, enable mpaste.
[propagated-inputs]: Remove gtk+-2, move libxrandr,
startup-notification ...
[inputs]: ... to here.  Add gtk+-3, python-2.
2016-11-08 22:18:07 +02:00
Efraim Flashner b6c5ad8564
gnu: mate-icon-theme: Update to 1.16.0.
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.16.0.
2016-11-08 22:16:54 +02:00
Efraim Flashner 065999807d
gnu: libmateweather: Update to 1.16.1.
* gnu/packages/mate.scm (libmateweather): Update to 1.16.1.

[arguments]: Build with gtk+-3.
[propagated-inputs]: Remove gtk+-2, move gdk-pixbuf ...
[inputs]: ... to here. Add gtk+-3.
2016-11-08 22:16:18 +02:00
Ricardo Wurmus 8ae6040451
gnu: Add faust-2.
* gnu/packages/audio.scm (faust-2): New variable.
2016-11-08 21:00:02 +01:00
Ricardo Wurmus 83c49858b5
gnu: Add LLVM variant with RTTI support.
* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
2016-11-08 20:59:58 +01:00
Marius Bakke f0ad50af8c
gnu: python-tempest-lib: Update to 1.0.0.
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:48 +00:00
Marius Bakke 43b53bbbf5
gnu: python-os-testr: Update to 0.8.0.
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update
to 0.8.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:18 +00:00
Marius Bakke eaba9d6670
gnu: python-jsonschema: Correct inputs.
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove
python-setuptools. Move python-vcversioner to ...
[native-inputs]: ... here.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Move
python2-functools32 to ...
[propagated-inputs]: ... here.
[native-inputs]: Add python2-setuptools.
2016-11-08 18:22:07 +00:00
Leo Famulari c163a28473
gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}].
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
2016-11-08 12:48:26 -05:00
Marius Bakke 912dcbad86
gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3.
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.5.3.
[native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
2016-11-08 16:14:15 +00:00
Leo Famulari fca4ff3559
gnu: Add python-pytest-2.9.2.
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-11-08 16:14:04 +00:00
Leo Famulari 667e777b4e
gnu: mupdf: Fix CVE-2016-{7504,7505,7506,7563,7564,9017,9136} in bundled mujs.
* gnu/packages/patches/mupdf-CVE-2016-7504.patch,
gnu/packages/patches/mupdf-CVE-2016-7505.patch
gnu/packages/patches/mupdf-CVE-2016-7506.patch
gnu/packages/patches/mupdf-CVE-2016-7563.patch
gnu/packages/patches/mupdf-CVE-2016-7564.patch
gnu/packages/patches/mupdf-CVE-2016-9017.patch
gnu/packages/patches/mupdf-CVE-2016-9136.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2016-11-08 11:03:14 -05:00
Efraim Flashner 72246dc029
gnu: gcc@4.7: Build with texinfo@5.
* gnu/packages/gcc.scm (gcc@4.7)[native-inputs]: Use texinfo@5 in place
of texinfo@6.
2016-11-08 16:24:29 +02:00
Theodoros Foradis 842a1400a7
gnu: Add plantuml.
* gnu/packages/uml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Roel Janssen <roel@gnu.org>
2016-11-08 14:59:04 +01:00
Leo Famulari 5045d80ff1
gnu: gnupg: Add TODO comment about custom build phase.
* gnu/packages/gnupg.scm (gnupg)[arguments]: Add comment.
2016-11-08 04:07:23 -05:00
Efraim Flashner a00fbe8adf
gnu: keepassx: Update to 2.0.3.
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.3.
[inputs]: Add libxi.
2016-11-07 21:57:00 +02:00
Efraim Flashner 2523691a22
gnu: owncloud-client: Update to 2.2.4.
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.4.
[arguments]: Enable tests, disable two failing tests.
[inputs]: Remove python-wrapper, qt, ruby.  Add qtbase, qtwebkit.
Move perl ...
[native-inputs]: ... to here.  Add cmocka and qttools.
2016-11-07 21:56:47 +02:00
Danny Milosavljevic 6a686b18e0
gnu: python-sqlalchemy-utils: Mention optional dependencies in description.
* gnu/packages/python.scm (python-sqlalchemy-utils,
python2-sqlalchemy-utils)[description]: Mention optional dependencies.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-07 12:49:03 -05:00
Marius Bakke 1581406e23
gnu: Add efibootmgr.
* gnu/packages/linux.scm (efibootmgr): New variable.
2016-11-07 12:12:59 +00:00
Marius Bakke 0d74462a5f
gnu: Add efivar.
* gnu/packages/linux.scm (efivar): New variable.
2016-11-07 12:12:56 +00:00
Ben Woodcroft 06028aed7c
gnu: ruby-tzinfo-data: Update to 1.2016.9.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.9.
2016-11-07 21:36:24 +10:00
Ben Woodcroft 17ba688c49
gnu: ruby-sqlite3: Update to 1.3.12.
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.12.
2016-11-07 21:35:31 +10:00
Ben Woodcroft e7d1d472cd
gnu: ruby-shoulda-context: Update to 1.2.2.
* gnu/packages/ruby.scm (ruby-shoulda-context): Update to 1.2.2.
2016-11-07 21:35:07 +10:00
Ben Woodcroft ca0839142e
gnu: ruby-domain-name: Update to 0.5.20161021.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20161021.
2016-11-07 21:34:15 +10:00
Ben Woodcroft 2a2eb07d87
gnu: ruby-http-cookie: Update to 1.0.3.
* gnu/packages/ruby.scm (ruby-http-cookie): Update to 1.0.3.
2016-11-07 21:33:41 +10:00
Ben Woodcroft 420fdfef9a
gnu: ruby-sequel: Update to 4.40.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.40.0.
2016-11-07 21:32:32 +10:00
Ben Woodcroft 3cf7c31720
gnu: diamond: Update to 0.8.26.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.26.
2016-11-07 21:31:09 +10:00
Thomas Danckaert bd9174860c
gnu: texmaker: Use modular qt and qtwebkit.
* gnu/packages/tex.scm (texmaker)[inputs]: Use modular qt and qtwebkit.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
Thomas Danckaert 47e1d280d5
gnu: Add qtwebkit.
* gnu/packages/qt.scm (qtwebkit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
Efraim Flashner fbc44ef2cd
gnu: nano: Update to 2.7.1.
* gnu/packages/nano.scm (nano): Update to 2.7.1.
[home-page]: Use https.
2016-11-07 07:55:01 +02:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
Leo Famulari 14ac8e4865
gnu: jansson: Update to 2.9.
* gnu/packages/web.scm (jansson): Update to 2.9.
[source]: Remove 'jansson-CVE-2016-4425.patch'.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-06 19:50:30 -05:00
Ludovic Courtès 19ac2ba858
gnu: glibc: Add version 2.23.
* gnu/packages/base.scm (glibc-2.23): New variable.
2016-11-07 00:44:56 +01:00
Ludovic Courtès fd68cc2c8b
gnu: ghostscript: Add 'upstream-name' property.
This allows 'guix refresh' to do the right thing.

* gnu/packages/ghostscript.scm (ghostscript)[properties]: New field.
2016-11-06 23:52:32 +01:00
Leo Famulari 2ad0240c56
gnu: acme-client: Update to 0.1.14.
* gnu/packages/tls.scm (acme-client): Update to 0.1.14.
2016-11-06 15:58:22 -05:00
Marius Bakke a95403876e
gnu: vim: Update to 8.0.0069.
* gnu/packages/vim.scm (vim): Update to 8.0.0069.
2016-11-06 20:44:43 +00:00
Efraim Flashner 63d8f08fbf
gnu: qtmultimedia: Remove bundled library.
* gnu/packages/qt.scm (qtmultimedia)[source]: Remove bundled library.
2016-11-06 22:25:11 +02:00
Efraim Flashner c04854da93
gnu: qtimageformats: Remove bundled libraries.
* gnu/packages/qt.scm (qtimagesformats)[source]: Remove bundled 3rd
party libraries.
2016-11-06 22:25:11 +02:00
Danny Milosavljevic 26d07efb79
gnu: python-sqlalchemy-utils: Use python-pytest.
* gnu/packages/python.scm (python-sqlalchemy-utils)[native-inputs]: Add
python-pytest.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:15 +00:00
Danny Milosavljevic c22b4f87c2
gnu: python-sqlalchemy-utils: Propagate existing inputs.
* gnu/packages/python.scm (python-sqlalchemy-utils)[inputs]: Move to ...
[propagated-inputs]: ... here.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic 462bf27157
gnu: Add python-flask-babel.
* gnu/packages/python.scm (python-flask-babel, python2-flask-babel):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic 9dede065ba
gnu: Add python-furl.
* gnu/packages/python.scm (python-furl, python2-furl): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic b91912c42a
gnu: Add python-orderedmultidict.
* gnu/packages/python.scm (python-orderedmultidict, python2-orderedmultidict):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
Danny Milosavljevic 4a0933307e
gnu: Add python-pycodestyle.
* gnu/packages/python.scm (python-pycodestyle, python2-pycodestyle):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
Marius Bakke f4dc22bcd9
gnu: nmap: Update to 7.31.
* gnu/packages/admin.scm (nmap): Update to 7.31.
[arguments]: Add phase 'patch-Makefile' to prevent lua from being built.
2016-11-06 16:17:29 +00:00
Marius Bakke 331ef882ff
gnu: wireshark: Use lua-5.2.
* gnu/packages/networking.scm (wireshark)[inputs]: Change from 'lua' to
'lua-5.2'.
2016-11-06 16:17:27 +00:00
Marius Bakke 6dbf1fec0d
gnu: lua: Update to 5.3.3.
* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.
2016-11-06 16:17:16 +00:00
ng0 f0badf98d7
gnu: pingus: Update upstream location.
* gnu/packages/games.scm (pingus)[source]: Update source uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:33 +02:00
ng0 73ea83f517
gnu: r-proto: Update project's home-page.
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:21 +02:00
Hartmut Goebel fab959d308
gnu: java-hamcrest-core: Fix build.
Since we now remove the directory "lib" from the source, we need to
create a directory where build.xml searches for .jar-files.

* gnu/packages/java.scm (java-hamcrest-core)[pahases]: New phase
  create-dummy-directories.
2016-11-06 11:49:12 +01:00
Hartmut Goebel e5213cd63b
gnu: java-hamcrest-core: Remove wrong source file-name.
The sources file-name was set to "java-hamcrest-core", while it contains
not only the "core" but all of hamcrest. Further the source archive
already has the correct name.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Remove file-name.
2016-11-06 10:55:08 +01:00
Hartmut Goebel 006728966a
gnu: java-hamcrest-core: Update upstream location.
The checksum changed since the new location's archive contains no
jar-files (except those of external libraries) and line endings are
different.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Update source
  uri and checksum. [snippet]: Remove directory "lib" completely.
2016-11-06 10:42:57 +01:00
Efraim Flashner 937bc2d137
gnu: bullet: Update to 2.85.1.
* gnu/packages/game-development.scm (bullet): Update to 2.85.1.
[source]: Change to new Github url.
[arguments]: Enable tests, build shared libraries.
[inputs]: Add glu, libx11, mesa.
2016-11-06 10:30:18 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Mark H Weaver 7f4658983a
gnu: epiphany: Update to 3.22.1.
* gnu/packages/gnome.scm (epiphany): Update to 3.22.1.
2016-11-06 02:55:52 -05:00
Efraim Flashner 569fc290b3
gnu: ibus: Update to 1.5.14.
* gnu/packages/ibus.scm (ibus): Update to 1.5.14.
[arguments]: Disable emojis.
[inputs]: Add json-glib.
[home-page]: Use project's new home-page.
2016-11-05 23:23:37 +02:00
Efraim Flashner 7acc2a3eb3
gnu: libkate: Update upstream location.
* gnu/packages/xiph.scm (libkate)[source]: Update source uri.
[home-page]: Update project's home-page.
2016-11-05 23:23:36 +02:00
ng0 2c62b31619
gnu: w3m: Fix the commit string.
* gnu/packages/w3m.scm (w3m)[source]: Fix the commit string.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 17:12:24 -04:00
Leo Famulari 683cdbf51b
gnu: python-axolotl-curve25519: Fix license.
* gnu/packages/python.scm (python-axolotl-curve25519,
python2-axolotl-curve25519)[license]: Replace ISC with BSD-3.
2016-11-05 16:34:14 -04:00
Arun Isaac 06ff083754
gnu: Add python-axolotl.
* gnu/packages/python.scm (python-axolotl, python2-axolotl): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:19 -04:00
Arun Isaac 2f6dd9cdef
gnu: Add python-axolotl-curve25519.
* gnu/packages/python.scm (python-axolotl-curve25519,
  python2-axolotl-curve25519): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:15 -04:00
Leo Famulari 9422c98a0a
gnu: python-imagesize: Disable the test suite.
* gnu/packages/python.scm (python-imagesize, python2-imagesize)[arguments]:
Disable the tests.
2016-11-05 14:13:39 -04:00
Leo Famulari 2d125a9b21
gnu: weex: Update to 2.8.2 [fixes CVE-2005-3150].
* gnu/packages/ftp.scm (weex): Update to 2.8.2.
[source]: Use new URL. Remove obsolete 'weex-vacopy.patch'.
[arguments]: Remove custom 'configure' phase and add 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and gnu-gettext.
* gnu/packages/patches/weex-vacopy.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-05 13:31:44 -04:00
Efraim Flashner 268b3802e9
gnu: whois: Update to 5.2.13.
* gnu/packages/networking.scm (whois): Update to 5.2.13.
2016-11-05 17:46:55 +02:00
Efraim Flashner 0cee33ac96
gnu: gst-plugins-bad: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.0.
[inputs]: Remove wayland.
[tests]: Update comment about failing tests.
[home-page]: Use https.
2016-11-05 17:41:39 +02:00
Efraim Flashner 18a9a7ef38
gnu: jasper: Update to 1.900.19.
* gnu/packages/image.scm (jasper): Update to 1.900.19.
[arguments]: Remove custom make-flags.
2016-11-05 17:41:38 +02:00
Efraim Flashner 378a0535e1
gnu: freeipmi: Update to 1.5.5.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.5.
2016-11-05 17:41:38 +02:00
Efraim Flashner 96451462c5
gnu: python-gst: Update to 1.10.0.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.0.
2016-11-05 17:41:38 +02:00
Efraim Flashner 81fc4b20c7
gnu: gst-libav: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 7aa083e581
gnu: gst-plugins-ugly: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 49eddefbf0
gnu: gst-plugins-good: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 74e6c84444
gnu: gst-plugins-base: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner e2a2eeecce
gnu: gstreamer: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.0.
2016-11-05 17:41:36 +02:00
ng0 05234973c7
gnu: Add mps-youtube.
* gnu/packages/video.scm (mps-youtube): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
ng0 02f8f804f0
gnu: Add python-pafy.
* gnu/packages/python.scm (python-pafy): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
Leo Famulari c2f4cab9a0
gnu: libidn: Distinguish from libidn2.
* gnu/packages/libidn.scm (libidn)[description]: Add detail to help distinguish
from libidn2.
2016-11-05 01:12:35 -04:00
Leo Famulari 250a8abc66
gnu: Add libidn2.
* gnu/packages/libidn.scm (libidn2): New variable.
2016-11-05 01:12:31 -04:00
Kei Kebreau 674a0f9558
gnu: w3m: Switch to Debian's actively maintained fork of w3m.
Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3>

* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-04 20:06:03 -04:00
Leo Famulari 682bfb8124
gnu: webkitgtk: Update to 2.14.2.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-11-04 19:49:11 -04:00
Ricardo Wurmus c27ae827da
gnu: Add jupyter.
* gnu/packages/python.scm (jupyter): New variable.
2016-11-04 21:23:08 +01:00
Ricardo Wurmus accd5f996e
gnu: python-ipython: Update to 4.0.0.
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus 8ceebf8fa6
gnu: Add python-jupyter-console.
* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus 4fe2e34409
gnu: Add python-ipywidgets.
* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus d55724ed5b
gnu: Add python-widgetsnbextension.
* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus a0d62280f5
gnu: Add python-notebook.
* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus c60898a845
gnu: Add python-nbconvert.
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus 60590a3ae8
gnu: Add python-entrypoints.
* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.
2016-11-04 21:23:04 +01:00
Kei Kebreau 08722837b0
gnu: chromium-bsu: Update to 0.9.16.1.
* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.
2016-11-04 11:17:09 -04:00
Ludovic Courtès bd2e1a8cb0
gnu: cross-base: Remove exports of cross compilers.
They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html>.

* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.
2016-11-04 15:36:00 +01:00
Ludovic Courtès fb77c61422
gnu: Remove '%final-inputs' references at the top level.
Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon.  This patch addresses one of
the remaining cases.

* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.
2016-11-04 15:36:00 +01:00
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory.
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory.
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity.
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri.
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
宋文武 1a79d4767a
gnu: xmp: Update to 4.1.0.
* gnu/packages/audio.scm (xmp): Update to 4.1.0.
2016-11-04 21:08:44 +08:00
宋文武 2784fca032
gnu: libxmp: Update to 4.4.1.
* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
2016-11-04 21:08:44 +08:00
Florian Paul Schmidt 18f3d92b39
gnu: Add swh-plugins-lv2.
* gnu/packages/audio.scm (swh-plugins-lv2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-11-04 12:11:06 +01:00
Ricardo Wurmus 55436048d8
gnu: Add python-bleach.
* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
2016-11-04 11:32:35 +01:00
Ricardo Wurmus 2d321bb2c5
gnu: Add python-nbformat.
* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
2016-11-04 11:29:16 +01:00
Ricardo Wurmus 8ee62c97f6
gnu: Add python-html5lib-0.9.
* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
2016-11-04 11:26:34 +01:00
Ricardo Wurmus 5ff6effcc0
gnu: Add python-testpath.
* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
2016-11-04 11:24:02 +01:00
Ricardo Wurmus ab526102ed
gnu: Add python-ipykernel.
* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
2016-11-04 11:23:19 +01:00
Ricardo Wurmus 9ff01f2d01
gnu: Add python-jupyter-client.
* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
2016-11-04 11:22:54 +01:00
Ricardo Wurmus 4263b06fa2
gnu: Add python-jupyter-core.
* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
2016-11-04 11:21:37 +01:00
Ricardo Wurmus a5ba14811a
gnu: python-traitlets: Update to 4.2.0.
* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
2016-11-04 11:19:22 +01:00
Leo Famulari 8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function.
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
2016-11-04 01:44:42 -04:00
Marius Bakke 6e1d7aa94e
gnu: Add font-adobe-source-code-pro.
* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
2016-11-03 20:32:04 +00:00
Marius Bakke b4edcd28cf
gnu: Add geteltorito.
* gnu/packages/cdrom.scm (geteltorito): New variable.
2016-11-03 20:31:36 +00:00
Kei Kebreau ccbc575824
gnu: maxima: Update to 5.38.1.
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
Kei Kebreau 043f1535c2
gnu: starfighter: Update to 1.6.
* gnu/packages/games.scm (starfighter): Update to 1.6.
2016-11-03 15:40:17 -04:00
Ricardo Wurmus ed8fbe5e62
gnu: r-rcas: Update to 1.0.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus 16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus c15ae9b008
gnu: r-biocparallel: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus 5b3b2d2f02
gnu: r-limma: Update to 3.30.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus ed3054231d
gnu: r-edger: Update to 3.16.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0.
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival.
* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus ac3265abad
gnu: Add r-htmltable.
* gnu/packages/web.scm (r-htmltable): New variable.
2016-11-03 19:01:44 +01:00
Kei Kebreau b81245ccb3
[PATCH] gnu: Add libjxr.
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
2016-11-03 13:43:23 -04:00
Danny Milosavljevic b054b26a48
gnu: sunxi-tools: Update to 1.4.1.
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags.  Remove 'fix-Makefile'
phase.  Add 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 15:58:04 +01:00
Arun Isaac 5d68e9d620
gnu: Add pdf2svg.
* gnu/packages/pdf.scm (pdf2svg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 14:33:50 +01:00
Ludovic Courtès 4c93fe83e8
gnu: mesa: Apply MIPS patch conditionally.
Fixes <http://bugs.gnu.org/24833>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/gl.scm (mesa)[source](patches): Remove.
[native-inputs]: Add conditional "mips-patch" input.
[arguments]: Add conditional 'apply-mips-patch' phase.
2016-11-03 11:24:39 +01:00
ng0 05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-02 23:16:11 -04:00
Leo Famulari b3cc0dce08
Merge branch 'master' into core-updates 2016-11-02 20:03:35 -04:00
Alex Sassmannshausen e681e347c4
gnu: Add perl-getopt-long.
* gnu/packages/perl.scm (perl-getopt-long): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-02 14:23:24 +00:00
Marius Bakke cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
2016-11-02 12:01:37 +00:00
Mark H Weaver ac1dc6d12f
gnu: linux-libre: Update to 4.8.6.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
2016-11-02 07:31:53 -04:00
Mark H Weaver b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
2016-11-02 07:29:28 -04:00
Ricardo Wurmus d439aa36ce
gnu: perl-test-simple: Update to 1.302062.
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
2016-11-02 11:51:46 +01:00
Marius Bakke 24dfc13bfa
gnu: re2: Update to 2016-11-01.
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
2016-11-02 05:34:09 +00:00
Leo Famulari 86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
2016-11-01 21:46:09 -04:00
Leo Famulari e777d07db9
gnu: iproute2: Update to 4.8.0.
* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.
2016-11-01 21:46:06 -04:00
David Thompson 2c1d46b257
gnu: love: Update to 0.10.2.
* gnu/packages/game-development.scm (love): Update to 0.10.2.
2016-11-01 21:03:18 -04:00
Ludovic Courtès 21f828e02e
gnu: emacs-debbugs: Update to 0.12.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.
2016-11-01 22:23:48 +01:00
Leo Famulari 3325803b0b
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].
* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.
2016-11-01 17:03:12 -04:00
Leo Famulari e3e3e488a1
gnu: diffoscope: Update to 62.
* gnu/packages/package-management.scm (diffoscope): Update to 62.
2016-11-01 16:17:12 -04:00
Marius Bakke bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-01 14:02:01 -04:00
Marius Bakke b56d9ce304
gnu: xapian: Update to 1.4.1.
* gnu/packages/search.scm (xapian): Update to 1.4.1.
2016-11-01 10:37:19 +00:00
Efraim Flashner 6846f08471
gnu: Correct hackage mirror usage.
* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.
2016-11-01 10:37:18 +02:00
Leo Famulari 40330e555f
gnu: icecat: Fix build with binutils >= 2.26.
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
2016-10-31 20:59:40 -04:00
Marius Bakke b3df4d7e57
gnu: Add speech-dispatcher.
* gnu/packages/speech.scm (speech-dispatcher): New variable.
2016-11-01 00:05:22 +00:00
Marius Bakke 0905048ab3
gnu: Add dotconf.
* gnu/packages/textutils.scm (dotconf): New variable.
2016-11-01 00:05:22 +00:00
Ricardo Wurmus 6e9d5d5fba
gnu: librecad: Update to 2.1.3.
* gnu/packages/engineering.scm (librecad): Update to 2.1.3.
2016-10-31 23:10:48 +01:00
Tobias Geerinckx-Rice e6efcd5837
gnu: virt-manager: Fix build by including 'gtk-update-icon-cache'.
* gnu/packages/qemu.scm (virt-manager)[native-inputs]: Add gtk+:bin.
2016-10-31 22:44:30 +01:00
Tobias Geerinckx-Rice 88dfd8b8aa
gnu: cups-minimal: Update to 2.2.1.
* gnu/packages/cups.scm (cups-minimal): Update to 2.2.1.
[source]: Use new https://github.com download URL.
2016-10-31 22:33:51 +01:00
Leo Famulari 65a3bdf7eb
gnu: borg: Run the tests with python-pytest-2.9.2.
* gnu/packages/backup.scm (borg)[native-inputs]: Use python-pytest-2.9.2.
2016-10-31 17:02:38 -04:00
Leo Famulari 0bc6ef2a87
gnu: Add python-pytest-2.9.2.
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-10-31 17:02:34 -04:00
Manolis Ragkousis d76181a7a3
gnu: cross-libc: Use the correct libc.
* gnu/packages/cross-base.scm (cross-libc): Use cross-libc-for-target
to determine the correct libc to use.
2016-10-31 19:42:26 +02:00
Leo Famulari fdc45ab1b0
gnu: imagemagick: Update to 6.9.6-3.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-3.
2016-10-31 13:31:32 -04:00
Federico Beffa 1a86b671ce
gnu: Add ghc-gnuplot.
* gnu/packages/haskell.scm (ghc-gnuplot): New variable.
2016-10-31 16:13:38 +01:00
Federico Beffa a5cbef03ba
gnu: Add ghc-utility-ht.
* gnu/packages/haskell.scm (ghc-utility-ht): New variable.
2016-10-31 16:13:35 +01:00
Federico Beffa 81a1191922
gnu: Add ghc-data-access-transformers.
* gnu/packages/haskell.scm (ghc-data-access-transformers): New variable.
2016-10-31 16:13:33 +01:00
Federico Beffa 505e0150dc
gnu: Add ghc-data-accessor.
* gnu/packages/haskell.scm (ghc-data-accessor): New variable.
2016-10-31 16:13:31 +01:00
Federico Beffa 6af886f492
gnu: geiser-next: Re-introduce it.
* gnu/packages/emacs.scm (geiser-next): Re-introduce it.
2016-10-31 16:13:27 +01:00