Commit Graph

14522 Commits

Author SHA1 Message Date
Chris Marusich 426e6083ae
gnu: Add asunder.
* gnu/packages/cdrom.scm (asunder): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-23 11:34:42 -05:00
Marius Bakke d0f1673dc3
gnu: dnscrypt-proxy: Update to 1.8.1.
* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.8.1.
2016-12-23 15:53:51 +01:00
Marius Bakke 14251e30c4
gnu: curl: Update replacement to 7.52.1 [fixes CVE-2016-{9586,9594}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.1.
[home-page]: Use HTTPS.
(curl-7.51.0): Replace with ...
(curl-7.52.1): ... this.
2016-12-23 15:31:36 +01:00
Bake Timmons b881dc6d98
gnu: Add wwwoffle.
* gnu/packages/web.scm (wwwoffle): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-23 15:18:02 +01:00
Thomas Danckaert d205f895ca
gnu: Add python-hdf4.
* gnu/packages/python.scm (python-hdf4, python2-hdf4): New variables.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-12-23 14:51:56 +01:00
Leo Famulari 4b4ff6938d
gnu: qsyncthingtray: Update to 0.5.7.
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.7.
2016-12-23 02:01:28 -05:00
Kei Kebreau e813f3956e
gnu: xonsh: Fix description.
* gnu/packages/shells.scm (xonsh)[description]: Two spaces after a period.
2016-12-22 18:06:56 -05:00
Efraim Flashner a532a6711e
gnu: qtimageformats: Add jasper support.
* gnu/packages/qt.scm (qtimageformats)[inputs]: Add jasper.
2016-12-23 01:01:27 +02:00
Stefan Reichör 572ee05c31
gnu: xonsh: Update to 0.5.0.
* gnu/packages/shells.scm (xonsh): Update to 0.5.0.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-12-22 17:59:41 -05:00
Marius Bakke 059b3aa9c3
gnu: gnupg: Fix build on 32-bit architectures.
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
2016-12-22 15:05:50 +01:00
Ricardo Wurmus 8e401ab6db
gnu: python-scikit-learn: Update to 0.18.1.
* gnu/packages/python.scm (python-scikit-learn): Update to 0.18.1.
[arguments]: Remove special "check" phase.
[native-inputs]: Add python-cython.
2016-12-22 13:19:20 +01:00
Leo Famulari 8bf4a6aecd
gnu: shotwell: Update to 0.25.2.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.2.
2016-12-22 02:54:42 -05:00
Leo Famulari 5d97f4c74a
gnu: libssh2: Update to 1.8.0.
* gnu/packages/ssh.scm (libssh2): Update to 1.8.0.
2016-12-22 00:17:54 -05:00
Efraim Flashner 5d0ebcc4cf
gnu: gcc: Update to 6.3.0.
* gnu/packages/gcc.scm (gcc): Update to 6.3.0.
2016-12-22 02:53:24 +02:00
Efraim Flashner 0d1baed223
gnu: abcde: Add flac support.
* gnu/packages/cdrom.scm (abcde)[inputs]: Add flac.
[arguments]: Wrap the bunary with flac's bin dir also.
2016-12-22 02:53:19 +02:00
Ricardo Wurmus 590b80d29a
Merge branch 'version-0.12.0' 2016-12-21 23:33:18 +01:00
Efraim Flashner d229ba9502
gnu: qemu: Update to 2.8.0.
* gnu/packages/qemu.scm (qemu): Update to 2.8.0.
[source]: Remove patches.
[arguments]: Set host_cc during 'configure.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-21 21:28:15 +02:00
Julien Lepiller 4da696877c
gnu: coq: Build coqide
* gnu/packages/ocaml.scm (coq): Build coqide.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-21 17:54:18 +01:00
Julien Lepiller 8afd19585f
gnu: lablgtk: use ocamlfind in installation
* gnu/packages/ocaml.scm (lablgtk): Use ocamlfind in installation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-21 17:54:18 +01:00
Julien Lepiller 054fea97b7
gnu: lablgtk: Update to 2.18.5
* gnu/packages/ocaml.scm (lablgtk): Update to 2.18.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-21 17:54:18 +01:00
Leo Famulari c8c385a04a
Revert "gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}]."
The curl maintainers said this about 7.52.0:

"Attention! We will release a patch update within a few days to fix a
serious security problem found in curl 7.52.0. You may consider holding
off until then."

This message was displayed at <https://curl.haxx.se/download.html> on
2016-12-21.

This reverts commit 42366b35c3.
2016-12-21 11:52:36 -05:00
Tobias Geerinckx-Rice f05f5b307e
gnu: mlt: Update to 6.4.1.
* gnu/packages/video.scm (mlt): Update to 6.4.1.
2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice 9fa7284155
gnu: jsoncpp: Update to 1.8.0.
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.0.
2016-12-21 16:37:01 +01:00
Tobias Geerinckx-Rice e177f819c0
gnu: xf86-video-vmware: Update to 13.2.1.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.2.1.
[native-inputs]: Add eudev.
2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice 7aef9930f0
gnu: xcb-util-xrm: Update to 1.2.
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.2.
2016-12-21 16:37:00 +01:00
Tobias Geerinckx-Rice 82f44a36e4
gnu: xcape: Update to 1.2.
* gnu/packages/xdisorg.scm (xcape): Update to 1.2.
2016-12-21 16:37:00 +01:00
Marius Bakke 42366b35c3
gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586,9952,9953}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.52.0.
(curl-7.51.0): Replace with ...
(curl-7.52.0): ... this.
2016-12-21 14:56:34 +01:00
Ludovic Courtès 7af6ecab6e
gnu: guix: Really skip "pivot-root" test.
This is a followup to fe9bdb581e (which
introduced 'test-equal' for the "pivot-root" test) and to
198eac2bca (which updated the regexps for
skipped tests.)

* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'disable-container-tests' phase, add "test-equal" to the regexp, so that
"pivot-root" is really skipped.
2016-12-21 14:28:28 +01:00
Ricardo Wurmus 7aa8785c41
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to b291b327.
2016-12-21 10:32:17 +01:00
Ludovic Courtès b291b3271a
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el.
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
2016-12-21 10:22:32 +01:00
Leo Famulari 6a148b9db5
gnu: imagemagick: Update to 6.9.7-0.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-0.
2016-12-20 20:50:50 -05:00
Marius Bakke 21eced80a0
gnu: nmap: Update to 7.40.
* gnu/packages/admin.scm (nmap): Update to 7.40.
2016-12-21 00:14:08 +01:00
Ludovic Courtès 64b5e41376
gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el.
This fixes a bug whereby:

  guix build linux-libre -s armhf-linux

would fail with:

  guix build: error: gnu/packages/linux.scm:231:2: package `linux-libre-4.8.15' has an invalid input: ("kconfig" #f)

This led 'tests/guix-system.sh' to fail.

* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Never add #f
as a "kconfig" input.
2016-12-20 23:39:30 +01:00
Efraim Flashner 899358d18a
gnu: msmtp: Update to 1.6.6.
* gnu/packages/mail.scm (msmtp): Update to 1.6.6.
2016-12-20 22:43:07 +02:00
Efraim Flashner 837ca0f071
gnu: getmail: Update to 4.52.0.
* gnu/packages/mail.scm (getmail): Update to 4.52.0.
2016-12-20 22:43:06 +02:00
Efraim Flashner c55fa42b2d
gnu: bogofilter: Use 'modify-phases'.
* gnu/packages/mail.scm (bogofilter)[arguments]: Use 'modify-phases'.
2016-12-20 22:43:06 +02:00
Efraim Flashner 329e0a9ca0
gnu: mutt: Update to 1.7.2.
* gnu/packages/mail.scm (mutt): Update to 1.7.2.
2016-12-20 22:43:06 +02:00
Efraim Flashner de75f0b1bf
gnu: mailutils: Use 'modify-phases' syntax.
* gnu/packages/mail.scm (mailutils)[arguments]: Use 'modify-phases'.
2016-12-20 22:43:06 +02:00
Efraim Flashner abe5d2dc8d
gnu: mailutils: Update to 3.1.1.
* gnu/packages/mail.scm (mailutils): Update to 3.1.1.
[inputs]: Build with current readline.
[arguments]: Set sysconfdir as /etc.
[home-page]: Use https.
2016-12-20 22:43:05 +02:00
Efraim Flashner e31d35de3f
gnu: gnupg: Remove unneeded input.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Remove adns.
2016-12-20 22:43:01 +02:00
Leo Famulari 8cb3e7e7de
gnu: borg: Update to 1.0.9.
* gnu/packages/backup.scm (borg): Update to 1.0.9.
[arguments]: Run the check phase in its own directory. Skip the test
'test_get_security_dir'.
2016-12-20 14:50:19 -05:00
Leo Famulari 4f6ff977c2
gnu: nss: Add comment about test failures in NSS 3.27.2
* gnu/packages/gnuzilla.scm (nss): Add comment.
2016-12-20 14:44:53 -05:00
Leo Famulari 6eda11de44
Revert "gnu: nss, nss-certs: Update to 3.27.2."
This reverts commit 7ab3ea4266.
2016-12-20 14:35:21 -05:00
Ricardo Wurmus 62a3179395
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to c8e2219c.
(guix): Set to GUIX-DEVEL.
2016-12-20 18:06:00 +01:00
Ricardo Wurmus c8e2219cfb
gnu: guix: Update to 0.12.0.
* gnu/packages/package-management.scm (guix-0.11.0): Rename to...
(guix-0.12.0): ... this.  Adjust users.
(guix): Set to GUIX-0.12.0.
2016-12-20 17:58:06 +01:00
ng0 7d2511bc6b
gnu: Add alsa-plugins.
* gnu/packages/linux.scm (alsa-plugins): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-12-20 10:22:06 -05:00
Marius Bakke 06fcd4a89e
gnu: gnupg: Update to 2.1.17.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.17.
2016-12-20 15:48:24 +01:00
Ludovic Courtès 4a78638f1f
gnu: cuirass: Make sure 'cuirass' has 'evaluate' in $PATH.
* gnu/packages/ci.scm (cuirass)[arguments]: Add OUT/bin to 'PATH'.
2016-12-20 10:27:08 +01:00
John Darrington 8c4e99cca3
gnu: Fix load-extension path in packaging of guile-ncurses.
* gnu/packages/guile.scm (guile-ncurses) [arguments]: Install shared object before
attempting to build the package.  Patch load-extension path before building instead
of after.
2016-12-20 06:43:29 +01:00
Tobias Geerinckx-Rice 1feeb2e035
gnu: argon2: Update to 20161029.
* gnu/packages/password-utils.scm (argon2): Update to 20161029.
2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 934ba12f3d
gnu: cppcheck: Update to 1.76.1.
* gnu/packages/check.scm (cppcheck): Update to 1.76.1.
2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 17c2294c24
gnu: hunspell: Add missing perl dependency.
* gnu/packages/libreoffice.scm (hunspell)[inputs]: Add perl dependency
for ispellaff2myspell.
2016-12-20 05:36:58 +01:00
Tobias Geerinckx-Rice 4dec10baa8
gnu: hunspell: Update to 1.5.4.
* gnu/packages/libreoffice.scm (hunspell): Update to 1.5.4.
[source]: Add a file-name.
2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice d36935cdd1
gnu: Add Ancient Greek Aspell dictionary.
* gnu/packages/aspell.scm (aspell-dict-grc): New variable.
2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice 707ee32471
gnu: aspell-dictionary: Use ‘modify-phases’ syntax.
* gnu/packages/aspell.scm (aspell-dictionary)[arguments]: Use
‘modify-phases’.
2016-12-20 05:36:57 +01:00
Tobias Geerinckx-Rice f87b8e25c3
gnu: weechat: Use new xz-compressed tarball.
* gnu/packages/irc.scm (weechat)[source]: Use ‘.tar.xz’ source.
2016-12-20 05:36:56 +01:00
Tobias Geerinckx-Rice 33d5b2464d
gnu: cutadapt: Use ‘modify-phases’ syntax.
* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Use
‘modify-phases’.
2016-12-20 05:36:55 +01:00
Efraim Flashner 2fb5af2c2b
gnu: enlightenment: Update to 0.21.5.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.5.
2016-12-20 04:22:29 +02:00
Efraim Flashner 0870372159
gnu: tor: Update to 0.2.9.8.
* gnu/packages/tor.scm (tor): Update to 0.2.9.8.
2016-12-20 03:55:38 +02:00
Ludovic Courtès 2eadd8285a
gnu: cuirass: Add Git to 'PATH'.
* gnu/packages/ci.scm (cuirass)[arguments]: In 'wrap-program' phase, add
Git to 'PATH'.
[inputs]: Add GIT.
2016-12-19 23:57:18 +01:00
ng0 c27b31e8d2
gnu: utox: Fix description.
* gnu/packages/messaging.scm (utox): Fix description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 23:57:18 +01:00
ng0 c413c6ade8
gnu: utox: Update to 0.11.0.
* gnu/packages/messaging.scm (utox): Update to 0.11.0.
[source]: Update source uri to new group namespace on github.
[build-system]: Change to cmake-build-system.
[arguments]: Remove previous content and disable tests,
add two new phases.
[inputs]: Remove libtoxcore, add c-toxcore.
[native-inputs]: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 23:57:18 +01:00
ng0 0ed5554a01
gnu: Add c-toxcore.
* gnu/packages/messaging.scm (c-toxcore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 23:57:18 +01:00
Marius Bakke acb5f7c3fc
gnu: Add grub-efi.
* gnu/packages/grub.scm (grub-efi): New variable.
2016-12-19 23:43:47 +01:00
Marius Bakke 7d0910d4a7
Revert "gnu: grub: Add dependency on efibootmgr."
This reverts commit 3eee16130d.

Reverted in favor of separate grub-efi package. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2016-12/msg00765.html .
2016-12-19 23:43:47 +01:00
Marius Bakke 7d8f7ab9be
gnu: grub: Use qemu-minimal for tests.
* gnu/packages/grub.scm (qemu-for-tests): Remove variable.
(grub)[native-inputs]: Replace QEMU-FOR-TESTS with QEMU-MINIMAL.
2016-12-19 23:43:09 +01:00
Tobias Geerinckx-Rice 8d1ef002ee
gnu: linux-libre: Fix typo.
* gnu/packages/linux.scm (%linux-libre-hash): Remove excess quote.
2016-12-19 20:42:19 +01:00
Tobias Geerinckx-Rice 1f94bff2d4
gnu: cutadapt: Update to 1.12.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12.
[inputs]: Add python-xopen.
2016-12-19 20:33:32 +01:00
Tobias Geerinckx-Rice 361a2fcf8d
gnu: Add python-xopen.
* gnu/packages/python.scm (python-xopen, python2-xopen): New variables.
2016-12-19 20:33:31 +01:00
Mark H Weaver 565775399e
gnu: linux-libre: Update to 4.8.15.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.15.
2016-12-19 14:07:27 -05:00
Mark H Weaver 9cedffe5db
Revert "gnu: linux-libre: Update to 4.9."
This reverts commit 5a3849443a.

Module loading is broken on i686 with some configurations, including our
default configuration.  See <https://bugs.gnu.org/25231>.
2016-12-19 14:03:41 -05:00
Marius Bakke a25b6880f1
gnu: python-efl: Disable tests.
* gnu/packages/enlightenment.scm (python-efl, python2-efl)[arguments]: Add
phase to set test environment. And set #:tests? #f.
2016-12-19 18:13:24 +01:00
Thomas Danckaert 834d12226b
gnu: kdbusaddons: Embed kinit store dir, avoid dependency cycles.
kdbusaddons needs to know the location of the kdeinit5 executable,
provided by kinit. kinit depends on kdbusaddons, so we add bootstrap
versions of all packages in the dependency chain from kinit to
kdbusaddons to avoid cyclic dependencies.

* gnu/packages/kde-frameworks.scm (kinit-bootstrap,
  kdbusaddons-bootstrap): New variables.
  (kdbusaddons)[inputs]: Add kinit-bootstrap.
  [source,arguments]: Add patch and substitution to embed
  kinit-bootstrap's store directory in the code.
* gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-19 17:51:00 +01:00
Leo Famulari 43686dcb2f
gnu: openssh: Update to 7.4p1.
* gnu/packages/ssh.scm (openssh): Update to 7.4p1.
[source]: Remove 'openssh-memory-exhaustion.patch'.
* gnu/packages/patches/openssh-memory-exhaustion.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-19 10:54:11 -05:00
Leo Famulari 307349f6f7
gnu: samba: Update to 4.5.3 [fixes CVE-2016-{2123,2125,2126}].
* gnu/packages/samba.scm (samba): Update to 4.5.3.
2016-12-19 09:50:02 -05:00
Marius Bakke 94a84d8367
gnu: pcsc-lite: Update to 1.8.19.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.19.
2016-12-19 14:27:33 +01:00
Manolis Ragkousis be6a70edc2
gnu: hurd-headers: Update to 0.9.
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.9.
2016-12-19 12:04:48 +02:00
Manolis Ragkousis 9c9402be2e
gnu: mig: Update to 1.8.
* gnu/packages/hurd.scm (mig): Update to version 1.8.
2016-12-19 12:04:43 +02:00
Manolis Ragkousis d950f03848
gnu: gnumach-headers: Update to 1.8.
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.8.
2016-12-19 12:04:21 +02:00
Kei Kebreau 5f80054053
gnu: gnuplot: Update to 5.0.5.
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
2016-12-18 23:27:43 -05:00
Marius Bakke c0b12a606b
gnu: sshoot: Fix tests.
* gnu/packages/vpn.scm (sshoot)[arguments]: Add 'patch-paths' phase.
2016-12-19 04:13:59 +01:00
Marius Bakke 1c1b67a3c9
gnu: thefuck: Correct inputs and disable tests.
* gnu/packages/admin.scm (thefuck)[arguments]: Set #:tests? #f.
[inputs]: Move everything to ...
[propagated-inputs]: ... here. Remove duplicate [inputs] and python-setuptools.
[native-inputs]: Add python-pytest, python-pytest-mock and python-mock.
2016-12-19 01:28:27 +01:00
Kei Kebreau 5a2604bfb6
gnu: wxmaxima: Update to 16.12.0.
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
2016-12-18 14:05:40 -05:00
Kei Kebreau 55b2756906
gnu: tor: split description into two parts for easier reading.
* gnu/packages/tor.scm (tor)[description]: Split it.
2016-12-18 13:00:11 -05:00
Kei Kebreau 4a652c78d4
gnu: maxima: Update to 5.39.0.
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
2016-12-18 12:57:09 -05:00
Marius Bakke 0599416520
gnu: mumble: Update to 1.2.18.
* gnu/packages/telephony.scm (mumble): Update to 1.2.18.
2016-12-18 16:53:21 +01:00
Hartmut Goebel 00e0ca7ccb
gnu: python-docutils: Update to 0.13.1
* gnu/packages/python.scm(python-docutils): Update to 0.13.1.
[source]: Use pypi-uri.
2016-12-18 16:31:35 +01:00
Ludovic Courtès 8a4c988892
build: check-final-inputs-self-contained has an exception for 'bash:include'.
Currently 'bash:include' of the final Bash depends on bootstrap stuff.

* build-aux/check-final-inputs-self-contained.scm (final-inputs): Add
clause for 'bash:include'.
* gnu/packages/commencement.scm (bash-final): Add FIXME comment.
2016-12-18 12:37:26 +01:00
Ricardo Wurmus 5073ecf055
gnu: yoshimi: Update to 1.5.0.
* gnu/packages/music.scm (yoshimi): Update to 1.5.0.
2016-12-18 12:00:33 +01:00
Nicolas Goaziou 36a318adc7
gnu: emacs-org: Update to 20161214.
* gnu/packages/emacs.scm (emacs-org): Update to 20161214.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2016-12-18 17:05:45 +08:00
Leo Famulari 51d8395ac6
gnu: youtube-dl: Update to 2016.12.15.
* gnu/packages/video.scm (youtube-dl): Update to 2016.12.15.
2016-12-17 20:27:21 -05:00
Raoul Bonnal a1814e4a27
gnu: r: Update to 3.3.2.
* gnu/packages/statistics.scm (r): Update to 3.3.2.
2016-12-18 10:02:52 +10:00
Ben Woodcroft 3fffabce2a
gnu: Add attribution line for Raoul Bonnal.
This is a follow-up commit to c9e9154e99.

* gnu/packages/bioinformatics.scm: Add attribution.
2016-12-18 10:01:04 +10:00
Marius Bakke 7b6ff42aa3
gnu: git-annex-remote-hubic: Fix python-dateutil dependency.
This is a followup to 22d7360b16.

* gnu/packages/version-control.scm (git-annex-remote-hubic)[propagated-inputs]:
Change python-dateutil-2 to python-dateutil.
2016-12-18 00:44:09 +01:00
Ludovic Courtès a32d0c8304
gnu: sane-backends: Remove timestamps from the output.
* gnu/packages/scanner.scm (sane-backends-minimal)[source](modules, snippet):
New fields.
2016-12-17 23:13:05 +01:00
Andy Patterson 4c92874328
gnu: Add and use sane-backends.
* gnu/packages/scanner.scm (sane-backends): New variable.
* gnu/packages/gnome.scm (colord, simple-scan): Use it instead of
'sane-backends-minimal'.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-17 23:13:05 +01:00
Andy Patterson 32aa37a2e7
gnu: Add and use sane-backends-minimal.
* gnu/packages/scanner.scm (sane-backends): Rename to...
(sane-backends-minimal): this. Adjust name, source, synopsis and
description accordingly.
* gnu/packages/cups.scm (hplip): Use 'sane-backends-minimal' instead of
'sane-backends'.
* gnu/packages/gnome.scm (colord, simple-scan): Likewise.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
* gnu/packages/wine.scm (wine): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-17 23:13:04 +01:00
Andy Patterson 33a14e29f9
gnu: sane-backends: Disable backend generation.
* gnu/packages/scanner.scm (sane-backends)[arguments]: Add a phase to
disable the compilation of backends.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-17 23:13:04 +01:00
Leo Famulari 9b1d77f6d4
gnu: pinentry: Update to 1.0.0.
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.0.0.
2016-12-17 13:40:42 -05:00
Leo Famulari 402efb61d3
gnu: npth: Update to 1.3.
* gnu/packages/gnupg.scm (npth): Update to 1.3.
2016-12-17 13:40:42 -05:00
Ludovic Courtès d44fb7dd60
gnu: bootstrap: Add FTP URL for bootstrap binaries.
* gnu/packages/bootstrap.scm (%bootstrap-base-urls): Add
ftp://alpha.gnu.org (http://alpha.gnu.org is currently unresponsive.)
2016-12-17 14:46:42 +01:00
Raoul Bonnal c9e9154e99
gnu: star: Update to 2.5.2b.
* gnu/packages/bioinformatics (star): Update to 2.5.2b.
[source]: Delete precompiled binary.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2016-12-17 23:26:35 +10:00
Marius Bakke 39d0de3375
gnu: asciinema: Fix test requirements.
* gnu/packages/terminals.scm (asciinema)[native-inputs]: Add python-requests.
2016-12-17 12:19:41 +01:00
Marius Bakke 51ad11ad62
gnu: Add fatfsck-static.
* gnu/packages/disk.scm (dosfstools/static): New private variable.
(fatfsck/static): New variable.
2016-12-17 10:13:22 +01:00
Alex Kost 64e43c674e
gnu: Add emacs-guix.
* gnu/packages/emacs.scm (emacs-guix): New variable.
2016-12-17 10:56:39 +03:00
Alex Kost 753baf775f
gnu: Add emacs-bui.
* gnu/packages/emacs.scm (emacs-bui): New variable.
2016-12-17 10:56:39 +03:00
Leo Famulari e02f1473da
gnu: libgcrypt: Update to 1.7.5.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.7.5.
2016-12-17 00:56:48 -05:00
Leo Famulari c7ec7c9926
gnu: imagemagick: Update to 6.9.6-8.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-8.
2016-12-17 00:46:48 -05:00
Leo Famulari 7c1a7bf484
gnu: acme-client: Provide path to certificates.
* gnu/packages/tls.scm (acme-client)[arguments]: Add 'patch-paths' phase.
2016-12-17 00:09:10 -05:00
Leo Famulari f8faf537ca
gnu: libupnp: Fix CVE-2016-8863.
* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/libupnp.scm (libupnp)[source]: Use it.
2016-12-16 15:28:02 -05:00
Marius Bakke cdc2bb50b2
gnu: pbtranscript-tofu: Disable tests.
* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Set #:tests? #f.
2016-12-16 18:15:47 +01:00
Theodoros Foradis 850812decf
gnu: Add Greek Aspell dictionary
* gnu/packages/aspell.scm (aspell-dict-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-16 18:04:55 +01:00
ng0 fc9286d03a
gnu: tor: Recommend torsocks.
* gnu/packages/tor.scm (tor)[description]: Recommend torsocks.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-12-16 10:49:01 -05:00
Marius Bakke ee94ca11a1
gnu: python-beautifulsoup4: Fix python2 variant.
This is a followup to 5f37f0b66e.

* gnu/packages/python.scm (python-beautifulsoup4)[properties]: New
  field. Delay python2 variant.
2016-12-16 16:15:41 +01:00
Marius Bakke 752eb9e0d8
gnu: python2-kombu: Disable tests.
* gnu/packages/python.scm (python2-kombu)[arguments]: Set #:tests? #f.
2016-12-16 15:33:13 +01:00
Ludovic Courtès 3eee16130d
gnu: grub: Add dependency on efibootmgr.
Suggested by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/grub.scm (grub)[arguments]: In 'patch-stuff', set
efibootmgr absolute file name in 'platform.c'.
[inputs]: Add EFIBOOTMGR.
2016-12-16 14:45:56 +01:00
Marius Bakke 7c6bf660d8
gnu: python-pyopenssl: Enable tests.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[source]: Use it.
[arguments]: Replace 'check' with custom phase.
2016-12-16 14:36:15 +01:00
Marius Bakke 329553482d
gnu: ptpython: Disable tests.
* gnu/packages/python.scm (ptpython, ptpython2)[arguments]: Set #:tests? #f.
2016-12-16 13:39:07 +01:00
Marius Bakke 0d90875974
gnu: multiqc: Fix test dependencies.
* gnu/packages/bioinformatics.scm (multiqc)[native-inputs]: Add python-nose.
2016-12-16 13:28:49 +01:00
Marius Bakke 52f622ef9f
gnu: python-sympy: Update to 1.0.
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.0.
[propagated-inputs]: Add python-mpmath.
2016-12-16 13:22:12 +01:00
Marius Bakke 58a35665d9
gnu: Add python-mpmath.
* gnu/packages/python.scm (python-mpmath, python2-mpmath): New variables.
2016-12-16 13:22:10 +01:00
Marius Bakke 14386fc7d9
gnu: idr: Remove explicit wrapper. This is now done implicitly.
* gnu/packages/bioinformatics.scm (idr)[arguments]: Remove #:phases.
2016-12-16 13:16:39 +01:00
Marius Bakke b7a820fc97
gnu: idr: Correct inputs.
* gnu/packages/bioinformatics.scm (idr)[inputs]: Move everything from here ...
[propagated-inputs]: ... to here. Add python-sympy.
2016-12-16 13:11:20 +01:00
Marius Bakke 1c10a1d75c
gnu: idr: Disable tests.
* gnu/packages/bioinformatics.scm (idr)[arguments]: Set #:tests? #f.
2016-12-16 13:08:57 +01:00
Tobias Geerinckx-Rice c8502d9ec1
Revert "gnu: kmod: Update to 23."
This should have been pushed to the ‘staging’ branch first.

This reverts commit 1e1cd41629.
2016-12-16 12:19:50 +01:00
Marius Bakke aaffb9c97b
gnu: deeptools: Fix test dependency.
* gnu/packages/bioinformatics.scm (deeptools)[native-inputs]: Add python-nose.
2016-12-16 04:27:35 +01:00
Marius Bakke d281be18bc
gnu: clipper: Fix test dependency.
* gnu/packages/bioinformatics.scm (clipper)[native-inputs]: Add python2-nose.
2016-12-16 04:26:32 +01:00
Tobias Geerinckx-Rice 68ea090b93
gnu: libcap: Update to 2.25.
* gnu/packages/linux.scm (libcap): Update to 2.25.
2016-12-16 03:09:13 +01:00
Tobias Geerinckx-Rice 7c58c852c4
gnu: libraw1394: Update to 2.1.2.
* gnu/packages/linux.scm (libraw1394): Update to 2.1.2.
2016-12-16 03:08:43 +01:00
Tobias Geerinckx-Rice 1e1cd41629
gnu: kmod: Update to 23.
* gnu/packages/linux.scm (kmod): Update to 23.
2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice 3fe7cb872a
gnu: ethtool: Update to 4.8.
* gnu/packages/networking.scm (ethtool): Update to 4.8.
2016-12-16 03:08:42 +01:00
Tobias Geerinckx-Rice 7d162df8ce
gnu: mcelog: Update to 146.
* gnu/packages/linux.scm (mcelog): Update to 146.
2016-12-16 03:08:41 +01:00
Marius Bakke 154d207c43
gnu: python-apsw: Fix tests.
* gnu/packages/python.scm (python-apsw, python2-apsw)[arguments]: Use
  'modify-phases'. Add installed PYTHONPATH before running tests.
2016-12-16 02:45:49 +01:00
Mark H Weaver 0eb36dd17f
gnu: linux-libre@4.4: Update to 4.4.39.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.39.
2016-12-15 20:35:24 -05:00
Marius Bakke 80ce42bdbf
gnu: python-argcomplete: Fix tests.
* gnu/packages/python.scm (python-argcomplete,
  python2-argcomplete)[native-inputs]: Add python-pexpect and tcsh.
2016-12-16 02:16:23 +01:00
Marius Bakke 58f5fae7c4
gnu: python-widgetsnbextension: Fix tests.
* gnu/packages/python.scm (python-widgetsnbextension,
  python2-widgetsnbextension)[native-inputs]: Add python-certifi.
2016-12-16 02:14:54 +01:00
Marius Bakke ed11804309
gnu: python-pexpect: Update to 4.2.1.
* gnu/packages/python.scm (python-pexpect, python2-pexpect): Update to 4.2.1.
[source]: Use 'pypi-uri'.
[arguments]: Add 'prepare-tests' phase to patch paths and delete network test.
[native-inputs]: Add python-pytest, man-db and which.
[propagated-inputs]: Add python-ptyprocess.
2016-12-16 02:10:58 +01:00
Marius Bakke 01fb9f6638
gnu: python-axolotl: Remove workaround for bug #20765.
* gnu/packages/python.scm (python-axolotl, python2-axolotl)[arguments]:
Remove #:configure-flags.
2016-12-16 01:07:41 +01:00
Marius Bakke 22d7360b16
gnu: Remove python-dateutil@1.5.
* gnu/packages/python.scm (python-dateutil-2, python2-dateutil-2): Rename to ...
(python-dateutil, python2-dateutil): ... this. Remove 1.5 version.
(python-tzlocal, python2-tzlocal): Adjust variable name.
(python-rst.linker, python2-rst.linker): Likewise.
(pelican): Likewise.
(python-matplotlib, python2-matplotlib): Likewise.
(python-sqlalchemy-utils, python2-sqlalchemy-utils): Likewise.
(python-icalendar, python2-icalendar): Likewise.
(python-botocore, python2-botocore): Likewise.
(python-vobject, python2-vobject): Likewise.
(python-arrow, python2-arrow): Likewise.
(python-fake-factory, python2-fake-factory): Likewise.
(python-freezegun, python2-freezegun): Likewise.
(python-aniso8601, python2-aniso8601): Likewise.
* gnu/packages/jrnl.scm (jrnl): Likewise.
* gnu/packages/calendar.scm (limnoria): Likewise.
2016-12-16 00:54:48 +01:00
Leo Famulari fb73f07a0f
gnu: guile-irregex: Update to 0.9.6 [fixes CVE-2016-9954].
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.6.
2016-12-15 18:40:19 -05:00
Mathieu Lirzin 44ccd9622e
gnu: cuirass: Update to revision 2.
* gnu/packages/ci.scm (cuirass): Update to revision 2.
[native-inputs]: Add texinfo.
2016-12-15 22:50:24 +01:00
Tobias Geerinckx-Rice 177de53784
gnu: libpsl: Update to 0.16.0.
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
2016-12-15 21:05:05 +01:00
Marius Bakke 59f74825d6
gnu: python-flask-restplus: Disable tests.
* gnu/packages/python.scm (python-flask-restplus)[arguments]: Set #:tests? #f.
2016-12-15 19:56:44 +01:00
Marius Bakke ad348f9f39
gnu: python-gridmap: Disable tests.
* gnu/packages/python.scm (python-gridmap, python2-gridmap)[arguments]:
Set #:tests? #f.
2016-12-15 19:50:12 +01:00
Marius Bakke 15c37077bc
gnu: python-hy: Fix test suite.
* gnu/packages/python.scm (python-hy, python2-hy)[arguments]: Replace 'check'
phase with custom command.
[native-inputs]: Add python-coverage and python-nose.
2016-12-15 19:49:06 +01:00
Tobias Geerinckx-Rice 426aecfd48
gnu: openconnect: Update to 7.08.
* gnu/packages/vpn.scm (openconnect): Update to 7.09.
2016-12-15 19:31:45 +01:00
Marius Bakke 8653c1d557
gnu: python-py3status: Disable tests.
* gnu/packages/python.scm (python-py3status)[arguments]: Set #:tests? #f.
2016-12-15 19:09:18 +01:00
Marius Bakke 810f89839c
gnu: python-pylast: Disable tests.
* gnu/packages/music.scm (python-pylast, python2-pylast)[arguments]:
Set #:tests? #f.
2016-12-15 19:06:12 +01:00
Marius Bakke 0a70200951
gnu: python-pyserial: Disable tests.
* gnu/packages/python.scm (python-pyserial, python2-pyserial)[arguments]:
Set #:tests? #f.
2016-12-15 18:42:22 +01:00
Marius Bakke 8bd5164b4a
gnu: python-pystache: Disable tests for python3 variant.
* gnu/packages/python.scm (python-pystache)[arguments]: Disable tests.
[properties]: New field. Delay python2 variant.
(python2-pystache)[arguments]: Replace 'check' phase with custom command.
2016-12-15 18:35:21 +01:00
Marius Bakke 1f31a5e0bf
gnu: python-pytest-django: Disable tests.
* gnu/packages/django.scm (python-pytest-django,
  python2-pytest-django)[arguments]: Set #:tests? #f.
2016-12-15 18:19:34 +01:00
Marius Bakke 4eb385fb33
gnu: python-pytest-xdist: Disable tests.
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[arguments]: Set #:tests? #f.
2016-12-15 18:11:43 +01:00
Marius Bakke 9e378e6a5c
gnu: python-reportlab: Fix tests.
* gnu/packages/pdf.scm (python-reportlab, python2-reportlab)[arguments]:
Set #:test-target.
2016-12-15 17:55:36 +01:00
Marius Bakke 444464ec28
gnu: python-rpy2: Fix tests.
* gnu/packages/python.scm (python-rpy2, python2-rpy2)[arguments]: Replace
  check phase with custom post-install command.
2016-12-15 17:55:36 +01:00
Marius Bakke 6f976df677
gnu: python-seaborn: Disable tests.
* gnu/packages/python.scm (python-seaborn, python2-seaborn)[arguments]:
  Disable tests.
2016-12-15 17:31:29 +01:00
Marius Bakke 35d56b7b60
gnu: python-sqlalchemy-utils: Disable tests.
* gnu/packages/python.scm (python-sqlalchemy-utils,
  python2-sqlalchemy-utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-dateutil-2, python-flexmock, python-pcycopg2 and
  python-pytz.
2016-12-15 17:26:42 +01:00
Thomas Danckaert 7781afde65
gnu: Add kdevelop.
* gnu/packages/kde.scm (kdevelop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 17:11:32 +01:00
Thomas Danckaert c02c8cf4a8
gnu: Add kdevplatform.
* gnu/packages/kde.scm (kdevplatform): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 17:09:27 +01:00
Thomas Danckaert 7c1a52090d
gnu: libksysguard: Correct inputs.
* gnu/packages/kde.scm (libksysguard)[inputs]: Remove kdbusaddons,
  kdoctools, kinit, knewstruff, knotifications, kio; add kauth,
  kcompletion, kconfig, kcoreaddons, kwidgetsaddons.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 17:06:49 +01:00
Marius Bakke bfba083684
gnu: python-keystoneclient: Disable tests.
* gnu/packages/openstack.scm (python-keystoneclient,
  python2-keystoneclient)[arguments]: Set #:tests? #f.
2016-12-15 16:55:17 +01:00
Chris Marusich eee7878f4e
gnu: gnome-settings-daemon: Add dependency on NetworkManager.
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Remove
"--disable-network-manager".
[inputs]: Add NETWORK-MANAGER.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 16:51:11 +01:00
Chris Marusich fd070f35d3
gnu: network-manager: Enable session tracking with elogind.
* gnu/packages/gnome.scm (network-manager): Add configuration options
  "--with-systemd-logind=yes" (so we can use elogind to track login sessions)
  and "--with-consolekit=no" (so we don't use consolekit to track sessions,
  since it isn't packaged yet).  Add elogind as an input, and add a snippet to
  replace some references to systemd with elogind.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-15 16:50:48 +01:00
Marius Bakke c616b5d3b5
gnu: python-oauthlib: Fix tests.
* gnu/packages/python.scm (python-oauthlib)[native-inputs]:
  Add python-mock.
(python2-oauthlib)[native-inputs]: Inherit python-mock.
2016-12-15 16:50:15 +01:00
Marius Bakke f959495ba0
gnu: python-tempest-lib: Disable tests.
* gnu/packages/openstack.scm (python-tempest-lib,
  python2-tempest-lib)[arguments]: Set #:tests? #f.
2016-12-15 15:23:39 +01:00
Marius Bakke 73b494a11d
gnu: python-oslo.log: Disable tests.
* gnu/packages/openstack.scm (python-oslo.log, python2-oslo.log)[arguments]:
  Set #:tests? #f.
2016-12-15 15:22:16 +01:00
Marius Bakke 49910e6a7c
gnu: python-paramiko: Disable tests.
* gnu/packages/python.scm (python-paramiko, python2-paramiko)[arguments]:
Set #:tests? #f.
2016-12-15 14:01:27 +01:00
Marius Bakke 5ae31b547c
gnu: python-oslo.serialization: Disable tests.
* gnu/packages/openstack.scm (python-oslo.serialization,
  python2-oslo.serialization)[arguments]: Set #:tests? #f.
2016-12-15 13:55:54 +01:00
Marius Bakke ad59ebda53
gnu: python-oslo.utils: Disable tests.
* gnu/packages/openstack.scm (python-oslo.utils,
  python2-oslo.utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-bandit and python-oslo.config.
2016-12-15 13:50:55 +01:00
Marius Bakke d9184f4f76
gnu: python-oslo.config: Disable tests.
* gnu/packages/openstack.scm (python-oslo.config,
  python2-oslo.config)[arguments]: Set #:tests? #f.
2016-12-15 13:49:08 +01:00
Marius Bakke 130f68ec3b
gnu: python-stevedore: Fix tests.
* gnu/packages/openstack.scm (python-stevedore,
  python2-stevedore)[native-inputs]: Add python-discover, python-oslosphinx,
  python-sphinx and python-testrepository.
2016-12-15 13:45:07 +01:00
Marius Bakke bb56d9a18c
gnu: python-oslo.i18n: Disable tests.
* gnu/packages/openstack.scm (python-oslo.i18n, python2-oslo.i18n)[arguments]:
  Set #:tests? #f.
2016-12-15 13:35:57 +01:00
Marius Bakke f30e53369b
gnu: python-oslo.context: Disable tests.
* gnu/packages/openstack.scm (python-oslo.context,
  python2-oslo.context)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-coverage, python-hacking, python-mock,
  python-os-client-config, python-oslosphinx and python-sphinx.
2016-12-15 13:33:16 +01:00
Marius Bakke 767c7e0ed1
gnu: python-debtcollector: Disable tests.
* gnu/packages/openstack.scm (python-debtcollector,
  python2-debtcollector)[arguments]: Set #:tests? #f.
2016-12-15 13:23:56 +01:00
Marius Bakke 7917a13554
gnu: python-termstyle: Fix tests.
* gnu/packages/python.scm (python-termstyle)[arguments]: Replace 'check' phase
with custom command.
2016-12-15 13:17:29 +01:00
Marius Bakke a960e73fad
gnu: python-twisted: Disable tests.
* gnu/packages/python.scm (python-twisted, python2-twisted)[arguments]:
Set #:tests? #f.
2016-12-15 13:13:23 +01:00
Marius Bakke a74f9b12ae
gnu: python-zope-security: Disable tests.
* gnu/packages/python.scm (python-zope-security,
  python2-zope-security)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-six.
2016-12-15 12:45:26 +01:00
Marius Bakke 40bb8e07ae
gnu: python-zope-location: Disable tests.
* gnu/packages/python.scm (python-zope-location,
  python2-zope-location)[arguments]: Set #:tests? #f.
2016-12-15 12:42:39 +01:00
Marius Bakke 66b3aadb73
gnu: python-zope-proxy: Disable tests.
* gnu/packages/python.scm (python-zope-proxy, python2-zope-proxy)[arguments]:
  Set #:tests? #f.
2016-12-15 12:40:10 +01:00
Marius Bakke 7e8b1bfa4b
gnu: python-zope-configuration: Disable tests.
* gnu/packages/python.scm (python-zope-configuration,
  python2-zope-configuration)[arguments]: Set #:tests? #f.
2016-12-15 12:38:04 +01:00
Marius Bakke 22dba2eff9
gnu: python-zope-interface: Disable tests.
* gnu/packages/python.scm (python-zope-schema,
  python2-zope-schema)[arguments]: Set #:tests? #f.
2016-12-15 12:35:26 +01:00
Marius Bakke 385871e5f7
gnu: python-zope-testrunner: Disable tests.
* gnu/packages/python.scm (python-zope-testrunner,
  python2-zope-testrunner)[arguments]: Set #:tests? #f.
2016-12-15 12:12:13 +01:00
Marius Bakke 7b93d86670
gnu: snakemake: Update to 3.9.0.
* gnu/packages/python.scm (snakemake): Update to 3.9.0.
[source]: Use 'pypi-uri'.
[arguments]: Disable tests.
[home-page]: Update.
2016-12-15 10:12:38 +01:00
Marius Bakke 972cf9be52
gnu: python-ly: Disable tests.
* gnu/packages/python.scm (python-ly): Set #:tests? #f.
2016-12-15 10:02:41 +01:00
Mark H Weaver 48ef3f9d9c
gnu: icecat: Label patches that have since been assigned CVEs.
Document that the following CVEs are fixed: CVE-2016-9893, CVE-2016-9895,
CVE-2016-9897, CVE-2016-9898, CVE-2016-9899, CVE-2016-9900, CVE-2016-9901,
CVE-2016-9902, CVE-2016-9904, and CVE-2016-9905.  Note that these are all of
the CVEs fixed in Firefox ESR 45.6.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add comments to patches that
have since been assigned CVEs.
2016-12-14 19:55:26 -05:00
Marius Bakke 9026e6890a
gnu: python-scikit-image: Disable tests.
* gnu/packages/python.scm (python-scikit-image,
  python2-scikit-image)[arguments]: Set #:tests? #f.
2016-12-14 23:01:40 +01:00
Marius Bakke bfce8a344d
gnu: python-jedi: Disable tests.
* gnu/packages/python.scm (python-jedi, python2-jedi)[arguments]: Disable
  tests.
  [native-inputs]: Add python-pytest.
2016-12-14 22:59:56 +01:00
Marius Bakke ee4722411f
gnu: python-rdflib: Disable tests.
* gnu/packages/rdf.scm (python-rdflib)[arguments]: Set #:tests? #f.
[native-inputs]: Add python-nose.
(python2-rdflib)[inputs]: Remove field. Use 'package-with-python2'.
2016-12-14 22:24:50 +01:00
Tobias Geerinckx-Rice 0c6c9c00ab
gnu: Update more dead Google Code home pages.
* gnu/packages/bioinformatics.scm (cutadapt, mosaik, pepr)[home-page]:
Update to their respective replacements.
2016-12-14 22:08:51 +01:00
Marius Bakke 6145b60462
gnu: python-clint: Fix tests.
* gnu/packages/python.scm (python-clint, python2-clint)[native-inputs]: Add
  python-pytest.
  [arguments]: Replace 'check' phase with custom command.
2016-12-14 22:07:38 +01:00
Marius Bakke b7f3ea9532
gnu: python-fake-factory: Fix tests.
* gnu/packages/python.scm (python-fake-factory,
  python2-fake-factory)[arguments]: Replace 'check' phase with custom command.
2016-12-14 22:01:36 +01:00
Tobias Geerinckx-Rice 62d652a710
gnu: mdds: Replace dead Google Code home-page.
* gnu/packages/boost.scm (mdds)[home-page]: Update it.
2016-12-14 21:59:40 +01:00
Tobias Geerinckx-Rice 50995554f8
gnu: chibi-scheme: Replace dead Google Code home-page.
* gnu/packages/scheme.scm (chibi-scheme)[home-page]: Update it.
2016-12-14 21:59:39 +01:00
Tobias Geerinckx-Rice 6b7877e12c
gnu: python-mock: Update source and home-page URIs.
* gnu/packages/python.scm (python-mock)[source]: Use ‘pypi-uri’.
[home-page]: Replace dead Google Code home page.
2016-12-14 21:59:39 +01:00
Ricardo Wurmus 958f657656
gnu: libosinfo: Use stable URL for pci.ids.
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Use a stable URL for
the pci.ids file.
2016-12-14 21:58:32 +01:00
Tobias Geerinckx-Rice 8471a8d1fe
gnu: xkeyboard-config: Update to 2.19.
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.19.
2016-12-14 20:04:23 +01:00
Marius Bakke f620311a39
gnu: python-pyaml: Fix tests.
* gnu/packages/python.scm (python-pyaml, python2-pyaml)[native-inputs]: Add
  python-unidecode.
2016-12-14 19:53:21 +01:00
Marius Bakke e912752567
gnu: python-inflection: Fix test requirements.
* gnu/packages/python.scm (python-inflection,
  python2-inflection)[native-inputs]: Add python-pytest.
2016-12-14 19:50:44 +01:00
Marius Bakke 877fdac9e3
gnu: python-botocore: Disable tests.
* gnu/packages/python.scm (python-botocore, python2-botocore): Set #:tests? #f.
2016-12-14 19:49:35 +01:00
Marius Bakke 52a75a83f9
gnu: python-jmespath: Fix tests.
* gnu/packages/python.scm (python-jmespath, python2-jmespath)[native-inputs]:
  Add python-nose.
2016-12-14 19:45:46 +01:00
Marius Bakke 1b6d7c3f3f
gnu: python2-fastlmm: Fix test requirements.
* gnu/packages/python.scm (python2-fastlmm)[native-inputs]: Add python2-nose.
2016-12-14 19:38:50 +01:00
Marius Bakke da5ebd1007
gnu: python-biom-format: Fix tests.
* gnu/packages/bioinformatics.scm (python-biom-format,
  python2-biom-format)[native-inputs]: Add python-nose.
2016-12-14 19:18:26 +01:00
Marius Bakke 27fab2bf65
gnu: python-cryptography: Update to 1.7.1.
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
  to 1.7.1.
  [arguments]: Remove field.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.7.1.
2016-12-14 19:12:14 +01:00
Tobias Geerinckx-Rice 938f66cb86
gnu: man-pages: Update to 4.09.
* gnu/packages/man.scm (man-pages): Update to 4.09.
2016-12-14 19:09:49 +01:00
Marius Bakke 30e0229a17
gnu: python-pyopenssl: Disable tests.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[arguments]:
Set #:tests? #f.
[native-inputs]: Add python-pytest.
2016-12-14 18:36:52 +01:00
Marius Bakke bd100c7112
gnu: python-hypothesis: Don't propagate test inputs.
* gnu/packages/python.scm (python-hypothesis,
  python2-hypothesis)[propagated-inputs]: Move everything from here ...
  [native-inputs]: ... to here.
(python2-hypothesis)[native-inputs]: Append inherited native-inputs.
2016-12-14 17:35:28 +01:00
David Craven ecee21473b
gnu: Add rustc.
* gnu/packages/rust.scm (rustc): New variable.

Co-authored-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
2016-12-14 16:30:43 +01:00
David Craven 423f9e4494
gnu: Add rust bootstrap binaries.
* gnu/packages/rust.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm.
2016-12-14 16:30:42 +01:00
David Craven 22897187c1
gnu: llvm: Enable install utils.
* gnu/packages/llvm.scm (llvm)[arguments]: Add -DLLVM_INSTALL_UTILS=ON
  to configure-flags.
2016-12-14 16:30:42 +01:00
Leo Famulari 7ab3ea4266
gnu: nss, nss-certs: Update to 3.27.2.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.2.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.2.
2016-12-14 10:19:32 -05:00
Leo Famulari 5ac6b841c2
gnu: icedtea-8: Update to 3.2.0 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}].
* gnu/packages/java.scm (icedtea-8): Update to 3.2.0.
[arguments]: Pass '--disable-system-pcsc' and '--disable-system-sctp'
to #:configure-flags.
2016-12-14 10:19:32 -05:00
Leo Famulari ab129dac7d
gnu: icedtea-7: Update to 2.6.8 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}]
* gnu/packages/java.scm (icedtea-7): Update to 2.6.8.
2016-12-14 10:19:29 -05:00
Marius Bakke 497355dc09
gnu: python-nbconvert: Disable tests.
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert)[arguments]:
Set #:tests? #f.
[native-inputs]: Add python-pytest.
2016-12-14 12:59:40 +01:00
Marius Bakke 63b02364aa
gnu: python-iso8601: Fix test dependencies.
* gnu/packages/python.scm (python-iso8601, python2-iso8601)[native-inputs]:
  Add python-pytest.
2016-12-14 12:47:22 +01:00
Marius Bakke 55ab64516b
gnu: python-django-filter: Fix test suite.
* gnu/packages/django.scm (python-django-filter,
  python2-django-filter)[arguments]: Replace 'check' phase with custom command.
2016-12-14 12:43:36 +01:00
Marius Bakke 281cc11c8e
gnu: python-django-simple-math-captcha: Disable tests.
* gnu/packages/django.scm (python-django-simple-math-captcha,
  python2-django-simple-math-captcha)[arguments]: Set #:tests? #f.
2016-12-14 12:40:13 +01:00
Marius Bakke ea8907c5d5
gnu: python-mox3: Disable tests.
* gnu/packages/openstack.scm (python-mox3, python2-mox3)[arguments]: Disable
  tests.
  [native-inputs]: Add python-oslosphinx and python-sphinx.
2016-12-14 12:02:45 +01:00
Ben Woodcroft ce3f92e701
gnu: Add r-bit64.
* gnu/packages/statistics.scm (r-bit64): New variable.
2016-12-14 20:43:28 +10:00
Ben Woodcroft 42066e6b4a
gnu: Add r-bit.
* gnu/packages/statistics.scm (r-bit): New variable.
2016-12-14 20:43:28 +10:00
Marius Bakke 2ff4559b49
gnu: python-hacking: Disable tests.
* gnu/packages/openstack.scm (python-hacking, python2-hacking)[arguments]:
Set #:tests? #f.
2016-12-14 11:40:34 +01:00
Marius Bakke a717e8a698
gnu: python-flake8-2.2.4: Disable tests.
* gnu/packages/python.scm (python-flake8-2.2.4,
  python2-flake8-2.2.4)[arguments]: Set #:tests? #f.
2016-12-14 11:40:25 +01:00
Marius Bakke 73e3060d57
gnu: python-pep8-1.5.7: Disable tests.
* gnu/packages/python.scm (python-pep8-1.5.7, python2-pep8-1.5.7)[arguments]:
Set #:tests? #f.
2016-12-14 11:21:50 +01:00
Marius Bakke 0d84e1ef22
gnu: python-pyflakes-0.8.1: Disable tests.
* gnu/packages/python.scm (python-pyflakes-0.8.1,
  python2-pyflakes-0.8.1)[arguments]: Set #:tests? #f.
2016-12-14 11:19:11 +01:00
Marius Bakke 90110ef956
gnu: python-testrepository: Disable tests.
* gnu/packages/python.scm (python-testrepository, python2-testrepository):
Set #:tests? #f.
2016-12-14 10:46:47 +01:00
Marius Bakke f6c1ef1804
gnu: python-fixtures: Fix test suite.
* gnu/packages/python.scm (python-fixtures, python2-fixtures): Replace 'check'
  with custom phase.
  [native-inputs]: Add python-mock.
2016-12-14 10:40:21 +01:00
Marius Bakke fb08c4fedc
gnu: python-psutil: Disable tests.
* gnu/packages/python.scm (python-psutil, python2-psutil): Disable tests.
2016-12-14 10:18:33 +01:00
Mark H Weaver 5a3849443a
gnu: linux-libre: Update to 4.9.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-12-14 03:27:26 -05:00
Ludovic Courtès 4fbd0f4f86
gnu: guile-next: Update to 2.1.5.
* gnu/packages/guile.scm (guile-next): Update to 2.1.5.
[properties]: Add 'upstream-name', 'ftp-server', and 'ftp-directory'.
2016-12-14 08:48:38 +01:00
Leo Famulari 9d3a15b496
gnu: python-sphinx-rtd-theme: Build with python-sphinx.
* gnu/packages/python.scm (python-sphinx-rtd-theme,
python2-sphinx-rtd-theme)[propagated-inputs]: Add python-sphinx.
2016-12-13 20:54:34 -05:00
Leo Famulari 2b9e4bead9
gnu: python-zope-schema: Build with python-zope-exceptions.
* gnu/packages/python.scm (python-zope-schema,
python2-zope-schema)[propagated-inputs]: Add python-zope-schema.
2016-12-13 20:54:29 -05:00
Ludovic Courtès e8a463e646
gnu: usbutils: Update to 008.
* gnu/packages/linux.scm (usbutils): Update to 008.
[inputs]: Add EUDEV.
2016-12-14 00:22:49 +01:00
Ludovic Courtès 3232613e63
gnu: wireless-regdb: Update to 2016.06.10.
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.06.10.
2016-12-14 00:22:49 +01:00
Marius Bakke a792e1aa8d
gnu: python-cairocffi: Disable tests.
* gnu/packages/python.scm (python-cairocffi, python2-cairocffi)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:20 -05:00
Marius Bakke 6734c7bae3
gnu: python-cairocffi: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-cairocffi)[arguments]: Use 'modify-phases'.
2016-12-13 17:04:20 -05:00
Marius Bakke e2816ac72d
gnu: python-xcffib: Disable tests.
* gnu/packages/python.scm (python-xcffib, python2-xcffib)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:20 -05:00
Marius Bakke c8cd850c87
gnu: python-xcffib: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-xcffib)[arguments]: Use 'modify-phases'.
2016-12-13 17:04:19 -05:00
Marius Bakke cff0ccf9dc
gnu: python-requests: Disable tests.
* gnu/packages/python.scm (python-requests, python2-requests,
python-requests-2.7)[native-inputs]: Remove field.
[arguments]: New field. Set #:tests? #f.
2016-12-13 17:04:19 -05:00
Marius Bakke 97be1bc231
gnu: python-click: Fix tests.
* gnu/packages/python.scm (python-click, python2-click)[arguments]: Replace
'check' with custom phase.
[native-inputs]: Add python-pytest.
2016-12-13 17:04:19 -05:00
Marius Bakke 3fe2c209e0
gnu: python-tornado: Disable tests.
* gnu/packages/python.scm (python-tornado, python2-tornado)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:19 -05:00
Marius Bakke 03cb5f9edb
gnu: python-sphinx: Disable tests.
* gnu/packages/python.scm (python-sphinx, python2-sphinx)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:18 -05:00
Marius Bakke 995cb99e4b
gnu: python-pygments: Disable tests.
* gnu/packages/python.scm (python-pygments, python2-pygments)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:18 -05:00
Marius Bakke bd10e677d1
gnu: python-coverage: Disable tests.
* gnu/packages/python.scm (python-coverage, python2-coverage)[arguments]:
Set #:tests? #f.
2016-12-13 17:04:18 -05:00
Marius Bakke 4fd129ee86
gnu: python-six: Fix test dependencies.
* gnu/packages/python.scm (python-six, python2-six)[native-inputs]: Add
python-py and python-pytest.
2016-12-13 17:04:18 -05:00
Marius Bakke dcb0da7bff
gnu: python-py: Disable tests.
* gnu/packages/python.scm (python-py, python2-py)[arguments]: Set #:tests? #f.
2016-12-13 21:04:31 +01:00
Marius Bakke 673c0390aa
gnu: xproto: Update to 7.0.31.
* gnu/packages/xorg.scm (xproto): Update to 7.0.31.
2016-12-13 20:48:14 +01:00
Marius Bakke 3f1b4bc316
gnu: xf86-input-keyboard: Update to 1.9.0.
* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.9.0.
2016-12-13 20:39:01 +01:00
Marius Bakke 12f3af5f1a
gnu: xf86-video-ati: Update to 7.8.0.
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.8.0.
2016-12-13 20:37:13 +01:00
Marius Bakke 546856a3de
gnu: xf86-input-libinput: Update to 0.23.0.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.23.0.
2016-12-13 20:31:29 +01:00
Tobias Geerinckx-Rice d7f84eab02
gnu: iproute2: Update to 4.9.0.
* gnu/packages/linux.scm (iproute2): Update to 4.9.0.
[home-page]: Point to the latest attempt, and use HTTPS.
2016-12-13 19:32:34 +01:00
Alex Kost bee075e706
gnu: libjpeg-turbo: Fix typo.
This is a followup to commit e90a706e16.

* gnu/packages/image.scm (libjpeg-turbo): Remove extra "\".
2016-12-13 19:56:07 +03:00
Ludovic Courtès 1975ec69e7
gnu: epic5: Fix 'license' field to contain only licenses.
* gnu/packages/irc.scm (epic5)[license]: Call 'license:non-copyleft'.
2016-12-13 17:24:30 +01:00
Efraim Flashner 1d0814670c
gnu: python-pyqt: Update to 5.7.
* gnu/packages/qt.scm (python-pyqt): Update to 5.7.
2016-12-13 15:11:25 +02:00
Efraim Flashner e5a12fba82
gnu: onionshare: Update to 0.9.2 (fixes CVE-2016-5026).
* gnu/packages/tor.scm (onionshare): Update to 0.9.2.
[source]: Remove patch.
[arguments]: Update substitutions for new version.
* gnu/packages/patches/onionshare-fix-install-paths.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-13 13:12:31 +02:00
Ben Woodcroft 991e143d25
gnu: diamond: Update to 0.8.29.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.29.
2016-12-13 20:01:56 +10:00
Ben Woodcroft ced1c496aa
gnu: orfm: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.1.
2016-12-13 20:00:50 +10:00
Efraim Flashner 310248c621
gnu: libsrtp: Fix building on mips.
* gnu/packages/telephony.scm (libsrtp)[arguments]: Add substitution
changing variable name from 'mips' to 'mips_value'. Also substitute
dictionary location in test suite.
2016-12-13 11:15:49 +02:00
Efraim Flashner 6f09178d2a
gnu: libsrtp: Have source use file-name.
* gnu/packages/telephony.scm (libsrtp)[source]: Add file-name field.
2016-12-13 11:15:48 +02:00
Efraim Flashner e90a706e16
gnu: libjpeg-turbo: Fix build on mips.
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add substitution to
set variable type before use.
2016-12-13 11:15:32 +02:00
Marius Bakke 61dd253f8e
gnu: lftp: Update to 4.7.4.
* gnu/packages/ftp.scm (lftp): Update to 4.7.4.
[home-page]: Change to new domain.
[source]: Adjust to new domain. Add mirror.
2016-12-13 09:38:01 +01:00
Marius Bakke d660f7be6d
gnu: python-setuptools: Update to 31.0.0.
* gnu/packages/python.scm (python-setuptools, python2-setuptools): Update to
31.0.0.
[source]: Use 'pypi-uri'.
[license]: Update for bundled libraries.
2016-12-13 09:37:49 +01:00
Marius Bakke ad04bd6b2a
gnu: duplicity: Use 'modify-phases' syntax.
* gnu/packages/backup.scm (duplicity)[arguments]: Use 'modify-phases'.
2016-12-13 09:37:43 +01:00
Tobias Geerinckx-Rice 7843f276d1
gnu: xf86-video-nouveau: Update to 1.0.13.
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.13.
2016-12-13 04:59:22 +01:00
Tobias Geerinckx-Rice 80a612dccf
gnu: xf86-input-synaptics: Update to 1.9.0.
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.0.
2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice f63491a385
gnu: xf86-input-mouse: Update to 1.9.2.
* gnu/packages/xorg.scm (xf86-input-mouse): Update to 1.9.2.
2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice 5de2ec6deb
gnu: xf86-input-joystick: Update to 1.6.3.
* gnu/packages/xorg.scm (xf86-input-joystick): Update to 1.6.3.
2016-12-13 04:50:28 +01:00
Tobias Geerinckx-Rice 08cf3e4ce5
gnu: xf86-input-evdev: Update to 2.10.4.
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.4.
2016-12-13 04:50:27 +01:00
Tobias Geerinckx-Rice 2f79bbfc01
gnu: nano: Update to 2.7.2.
* gnu/packages/nano.scm (nano): Update to 2.7.2.
2016-12-13 04:30:04 +01:00
Tobias Geerinckx-Rice c82fd97e0b
gnu: libgcrypt: Update to 1.7.4.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.7.4.
2016-12-13 03:46:58 +01:00
Tobias Geerinckx-Rice 20f7a750ed
gnu: gnutls: Update to 3.5.7.
* gnu/packages/tls.scm (gnutls): Update to 3.5.7.
2016-12-13 03:46:57 +01:00
Ludovic Courtès b810a85019
gnu: Default to GCC 5.
This reinstates and adjusts
commit e3d0fcbf7e.

* gnu/packages/patches/gcc-libiberty-printf-decl.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source]: Use it.
[patches]: Add "gcc-arm-bug-71399.patch".
(gcc): Switch to GCC-5.
* gnu/packages/commencement.scm (libstdc++-boot0): New variable.
(gcc-boot0)[inputs]: Add it.
(gcc-toolchain-4.9): Switch to GCC-4.9.
(gcc-toolchain-5): Switch to GCC-FINAL.
* gnu/local.mk (dist_patch_DATA): Add 'gcc-libiberty-printf-decl.patch'.
2016-12-13 00:40:57 +01:00
Marius Bakke 1d0ceb4775
gnu: sqlite: Update to 3.15.2.
* gnu/packages/databases.scm (sqlite): Update to 3.15.2.
2016-12-12 22:54:25 +01:00
Tobias Geerinckx-Rice 68a9d6df5e
gnu: perl-dbix-class-introspectablem2m: Update source tarball URL.
* gnu/packages/perl.scm (perl-dbix-class-introspectablem2m)[source]: Update
tarball URL.
2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice 32fd260076
gnu: cssc: Update to 1.4.0.
* gnu/packages/version-control.scm (cssc): Update to 1.4.0.
[source]: Remove unneeded patches (i.e. all of them).
* gnu/packages/patches/cssc-gets-undeclared.patch: Delete file.
* gnu/packages/patches/cssc-missing-include.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove deleted patches.
2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice bea3cf4b90
gnu: gsl: Update to 2.3.
* gnu/packages/maths.scm (gsl): Update to 2.3.
2016-12-12 22:08:45 +01:00
Tobias Geerinckx-Rice 469846a7ba
gnu: vim: Update to 8.0.0133.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0133.
2016-12-12 22:08:44 +01:00
Kei Kebreau b43ec33b6d
gnu: denemo: Change default preferences to use the already-present lilypond.
* gnu/packages/music.scm (denemo)[progpagated-inputs]: Move lilypond to ...
[inputs]: ... here.
[phases]: New phase set-lilypond.
2016-12-12 12:16:17 -05:00
Efraim Flashner 987ad88fb6
gnu: calibre: Update to 2.74.0.
* gnu/packages/ebook.scm (calibre): Update to 2.74.0.
2016-12-12 16:14:30 +02:00
Efraim Flashner 0468eddafb
gnu: python-sip: Update to 4.18.1.
* gnu/packages/qt.scm (python-sip): Update to 4.18.1.
2016-12-12 16:14:30 +02:00
Efraim Flashner f9513086c4
gnu: python-pyqt-4: Use 'modify-phases' syntax.
* gnu/packages/qt.scm (python-pyqt-4)[arguments]: Use 'modify-phases'
syntax.
2016-12-12 16:14:30 +02:00
Efraim Flashner a0bc2d45eb
gnu: python-pyqt@5.5: Remove variable.
* gnu/packages/qt.scm (python-pyqt@5.5, python2-pyqt@5.5): Remove them.
2016-12-12 16:14:29 +02:00
Efraim Flashner c5ea912016
gnu: calibre: Update qt dependancies.
* gnu/packages/ebook.scm (calibre)[native-inputs]: Remove qt, add
qtbase.
[inputs]: Remove qt, replace python2-pyqt@5.5 with python2-pyqt.
2016-12-12 16:14:29 +02:00
Efraim Flashner e9adcd81b1
gnu: python-pyqt: Build with more qt modules.
* gnu/packages/qt.scm (python-pyqt)[inputs]: Add qtbase, qtconnectivity,
qtdeclarative, qtlocation, qtmultimedia, qtsensors, qtserialport, qtsvg,
qttools, qtwebchannel, qtwebkit, qtwebsockets, qtx11extras,
qtxmlpatterns.
(python2-pyqt)[inputs]: Same.
(python-pyqt@4)[inputs]: Only use python.
2016-12-12 16:14:24 +02:00
Ben Woodcroft 2df3d147ef
gnu: orfm: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.0.
2016-12-12 20:49:31 +10:00
Ludovic Courtès 92cc9cf180
gnu: guile: Update to 2.0.13.
* gnu/packages/guile.scm (guile-2.0): Update to 2.0.13.
[source](patches): New field.
[replacement]: Remove.
(guile-2.0.13): Remove.
2016-12-12 00:42:32 +01:00
Christopher Baines 23b40c6625
gnu: direnv: Update to 2.10.0.
* gnu/packages/shellutils.scm (direnv): Update to 2.10.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-11 17:58:55 -05:00
Leo Famulari 4a990395d7
Merge branch 'staging' 2016-12-11 15:03:52 -05:00
Danny Milosavljevic 0c6fc4b7e5
gnu: sunxi-tools: Update to 1.4.2.
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-11 14:14:31 -05:00
Marius Bakke 4eb6ed28a3
gnu: python-html5lib: Add dependency on python-webencodings.
* gnu/packages/python.scm (python-html5lib,
python2-html5lib)[propagated-inputs]: Add python-webencodings.
2016-12-11 20:09:26 +01:00
Marius Bakke adbca19e83
gnu: Add python-webencodings.
* gnu/packages/python.scm (python-webencodings, python2-webencodings): New
variables.
2016-12-11 20:09:23 +01:00
Mark H Weaver 81d6fd2457
gnu: linux-libre: Update to 4.8.14.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.14.  Remove patches.
(linux-libre-arm-generic): Remove patches.
2016-12-11 09:51:10 -05:00
Mark H Weaver 762bc71e21
gnu: linux-libre@4.4: Update to 4.4.38.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.38.
Remove patches.
2016-12-11 09:51:08 -05:00
Ricardo Wurmus 0ff55f9d77
gnu: fcgi: Disable parallel building.
* gnu/packages/web.scm (fcgi)[arguments]: Disable parallel building.
2016-12-11 15:18:36 +01:00
Tobias Geerinckx-Rice 1ce6f33b0c
gnu: Add sshoot.
* gnu/packages/vpn.scm (sshoot): New variable.
2016-12-11 11:58:41 +01:00
Tobias Geerinckx-Rice 6c2e82bcb7
gnu: Add python-argcomplete.
* gnu/packages/python.scm (python-argcomplete): New variable.
2016-12-11 11:58:40 +01:00
Tobias Geerinckx-Rice 5c863d57ff
gnu: Add sshuttle.
* gnu/packages/vpn.scm (sshuttle): New variable.
2016-12-11 11:58:40 +01:00
Leo Famulari 5ce09ef18f
gnu: openjpeg-2.1.2: Use a meaningful file-name for the source code.
This is a followup to commit 0e8b7b1c35.

* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Give a meaningful
file-name.
2016-12-11 02:25:16 -05:00
Leo Famulari b245f7589e
gnu: diffoscope: Update to 63.
* gnu/packages/package-management.scm (diffoscope): Update to 63.
[arguments]: Remove obsolete 'disable-failing-test' and 'disable-egg-zipping'
phases. The former was fixed upstream, and the latter is fixed by the new Python
build system.
2016-12-11 02:04:38 -05:00
Leo Famulari 0e8b7b1c35
gnu: openjpeg: Update replacement to 2.1.2 [fixes CVE-2016-{7445,8332}].
* gnu/packages/image.scm (openjpeg/fixed): Replace variable with ...
(openjpeg-2.1.2): ... this.
[patches]: Remove patches inherited from openjpeg.
(openjpeg)[replacement]: Replace with openjpeg-2.1.2.
2016-12-11 02:04:31 -05:00
Mark H Weaver d94691e0c2
Merge branch 'master' into staging 2016-12-10 23:03:57 -05:00
Kei Kebreau edd1652e0a
gnu: Add denemo.
* gnu/packages/music.scm (denemo): New variable.
2016-12-10 19:40:01 -05:00
Tobias Geerinckx-Rice 14f4a46c98
gnu: libpsl: Update to 0.16.0.
* gnu/packages/web.scm (libpsl): Update to 0.16.0.
2016-12-11 00:50:13 +01:00
David Craven e31b75f22f
gnu: Add ocaml-menhir.
* gnu/packages/ocaml.scm (ocaml-menhir): New variable.
2016-12-10 21:47:08 +01:00
David Craven 2694d1dc80
gnu: coq: Update to 8.5pl2.
* gnu/packages/ocaml.scm (coq): Update to 8.5pl2.
  [arguments]: Configure script takes single hyphen arguments.
2016-12-10 21:47:08 +01:00
David Craven 60bc622b1d
gnu: idris: Update to 0.12.3.
* gnu/packages/haskell.scm (idris): Update to 0.12.3.
  [origin]: Remove snippet.
  [inputs]: Add ghc-aeson, ghc-async, ghc-fsnotify, ghc-regex-tdfa,
  ghc-tasty-golden, ghc-tasty-rerun and ghc-terminal-size.
  [arguments]: Disable tests.
2016-12-10 21:47:08 +01:00
David Craven 3ea25176f0
gnu: ghc-trifecta: Update to 1.6.
* gnu/packages/haskell.scm (ghc-trifecta): Update to 1.6.
  [inputs]: Add ghc-doctest and ghc-quickcheck.
  [arguments]: Enable tests.
2016-12-10 21:47:08 +01:00
David Craven 4e05c326ef
gnu: Add ghc-terminal-size.
* gnu/packages/haskell.scm (ghc-terminal-size): New variable.
2016-12-10 21:47:08 +01:00
David Craven 5e6cafe157
gnu: Add ghc-ieee754.
* gnu/packages/haskell.scm (ghc-ieee754): New variable.
2016-12-10 21:47:07 +01:00
David Craven f7e624b639
gnu: Add ghc-tasty-rerun.
* gnu/packages/haskell.scm (ghc-tasty-rerun): New variable.
2016-12-10 21:47:07 +01:00
David Craven b7f96285a5
gnu: Add ghc-fsnotify.
* gnu/packages/haskell.scm (ghc-fsnotify): New variable.
2016-12-10 21:47:07 +01:00
David Craven f63981de14
gnu: Add ghc-hinotify.
* gnu/packages/haskell.scm (ghc-hinotify): New variable.
2016-12-10 21:47:07 +01:00
Mark H Weaver 56c394ee43
gnu: icecat: Add more fixes from upstream mozilla-esr45.
* gnu/packages/gnuzilla.scm (icecat)[sources]: Add more fixes from the
upstream mozilla-esr45 repository.
2016-12-10 15:22:38 -05:00
Efraim Flashner 78636f0b8c
gnu: grep: Update to 2.27.
* gnu/packages/base.scm (grep): Update to 2.27.
2016-12-10 22:10:30 +02:00
Efraim Flashner 67c539e21f
gnu: Remove unused patch.
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-10 21:59:56 +02:00
Efraim Flashner a304b6c362
gnu: openjpeg: Add fixes for CVE-2016-{9850,9851}.
* gnu/packages/image.scm (openjpeg)[replacement]: New field.
(openjpeg/fixed): New variable, patch against CVE-2016-9850,
CVE-2016-9851.
* gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-12-10 21:46:45 +02:00
Efraim Flashner 70c1d5ed05
gnu: ffmpeg@2.8: Update to 2.8.9.
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.9.
2016-12-10 21:00:23 +02:00
Efraim Flashner a6cd85742d
gnu: jasper: Update to 2.0.6.
* gnu/packages/image.scm (jasper): Update to 2.0.6.
2016-12-10 20:59:19 +02:00
Christopher Baines a77f036084
gnu: password-store: Don't run tests in parallel.
* gnu/packages/password-utils.scm (password-store): Don't run tests in
  parallel, as it causes them to hang and the build to timeout.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-10 14:07:32 +01:00
Christopher Baines 619f98fa8f
gnu: password-store: Delete build phase
* gnu/packages/password-utils.scm (password-store): Remove the build
  phase, as it is unused.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-10 14:04:18 +01:00
Marius Bakke fc184fe2de
gnu: openssl-next: Update to 1.1.0c [fixes CVE-{7053,7054,7055}].
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0c.
[arguments]: Duplicate 'configure' to add rpath flag previously handled by
now-defunct 'patch-runpath' phase. Duplicate 'remove-miscellany' phase.
2016-12-10 14:00:05 +01:00
Kei Kebreau fdb552bbd4
gnu: windowmaker: Fix invocation of 'wmsetbg'.
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Add substitution of
40-character limit with a 107-character limit.
2016-12-09 22:10:06 -05:00
Ben Woodcroft a225db5293
gnu: vsearch: Update to 2.3.4.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
2016-12-10 10:45:13 +10:00
Ben Woodcroft 7922ab8fe8
gnu: pardre: Update to 1.1.5-1.
* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source]: Update source hash.
2016-12-10 10:45:12 +10:00
Mark H Weaver 6b2921c3ac
gnu: linux-libre: Add fixes for CVE-2016-8655 et al.
* gnu/packages/linux.scm (linux-libre, linux-libre-arm-generic):
Add patches for CVE-2016-8655 and the vulnerability described in
<http://seclists.org/oss-sec/2016/q4/644>.
2016-12-09 18:36:21 -05:00
Mark H Weaver 1134e99d86
gnu: linux-libre@4.4: Add fixes for CVE-2016-8655 et al.
* gnu/packages/linux.scm (linux-libre-4.4): Add patches for CVE-2016-8655 and
the vulnerability described in <http://seclists.org/oss-sec/2016/q4/644>.
2016-12-09 18:36:03 -05:00
Ludovic Courtès 72c0b68780
gnu: libsoup: Update to 2.56.0.
* gnu/packages/gnome.scm (libsoup): Update to 2.56.0.
2016-12-10 00:10:30 +01:00
Ben Woodcroft fdf3a68d9e
gnu: ruby-sdoc: Update to 0.4.2.
* gnu/packages/ruby.scm (ruby-sdoc): Update to 0.4.2.
[arguments]: Remove 'relax-minitest-requirement' phase, Add 'set-rubylib'
phase.
[native-inputs]: Add ruby-hoe.
2016-12-10 07:51:47 +10:00
Ben Woodcroft 71596c3ce6
gnu: Adjust gemspec modifications for ruby-2.3.2.
* gnu/packages/ruby.scm (ruby-mocha)[arguments]: Adjust 'substitute*' of
gemspec.
(ruby-domain-name)[arguments]: Likewise.
2016-12-10 07:50:16 +10:00
Mark H Weaver 750778abd4
gnu: linux-libre: Update to 4.8.13.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.13.
2016-12-09 15:13:22 -05:00
Mark H Weaver 33d6a2ff9f
gnu: linux-libre@4.4: Update to 4.4.37.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.37.
2016-12-09 15:10:17 -05:00
Paul Garlick f81c6a4932
gnu: gmsh: Update to 2.15.0.
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 19:14:21 +01:00
Marius Bakke dfdc92259b
gnu: libev: Update to 4.23.
* gnu/packages/libevent.scm (libev): Update to 4.23.
2016-12-09 18:23:05 +01:00
Ludovic Courtès f80b4d2ce0
Merge remote-tracking branch 'origin/master' into staging 2016-12-09 18:11:14 +01:00
Ludovic Courtès 13b5f44b47
gnu: libepoxy: Add patch to avoid segfault when GL support is missing.
* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file.
* gnu/packages/gl.scm (libepoxy)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-12-09 18:09:43 +01:00
Ludovic Courtès d99ee3d923
gnu: ruby-sdoc: Really relax minitest version requirement.
* gnu/packages/ruby.scm (ruby-sdoc)[arguments]: Adjust pattern in
'relax-minitest-requirement'.
2016-12-09 15:39:13 +01:00
Hartmut Goebel 43e8824d3c
gnu: python-pyqt: Fix build by explicitly setting the stubsdir.
* gnu/packages.qt.scm (python-pyqt, python2-pyqt)[arguments]: In phase
'configure' pass option --stubsdir.
2016-12-09 13:04:17 +01:00
Hartmut Goebel 931eaeaad9
gnu: python-pyqt-5.5: Use non-inherited "configure" phase.
This allows passing different options for 5.5 than for the main version
(which is currently 5.6).

* gnu/packages.qt.scm (python-pyqt-5.5, python2-pyqt-5.5)[arguments]: Copy
from (python-pyqt)[arguments].
2016-12-09 13:04:17 +01:00
Hartmut Goebel 9fde877856
gnu: python2-pyqt-4: Change package name to python2-pyqt.
* gnu/packages/qt.scm (python2-pyqt-4)[package]: Change "name"
python2-pyqt.
2016-12-09 13:04:17 +01:00
Danny Milosavljevic 444a79b6fe
gnu: Add python-flask-restful-swagger.
* gnu/packages/python.scm (python-flask-restful-swagger,
  python2-flask-restful-swagger): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 11:57:10 +01:00
Marius Bakke fe3b8862cf
gnu: alot: Update to 0.4.
* gnu/packages/mail.scm (alot): Update to 0.4.
[arguments]: Update python3 comment.
2016-12-09 11:47:39 +01:00
Julien Lepiller b1a3c533f3
gnu: php: Update to 7.0.14.
* gnu/packages/php.scm (php): Update to 7.0.14.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 09:58:36 +01:00
Leo Famulari e11fb2b862
gnu: parallel: Update 20161122.
* gnu/packages/parallel.scm (parallel): Update to 20161122.
2016-12-08 23:12:51 -05:00
rennes 1f6a73ee6b
gnu: Add gnome-system-monitor.
* gnu/packages/gnome.scm (gnome-system-monitor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-08 23:42:12 +01:00
ng0 0c69a17efd
gnu: Add epic5.
* gnu/packages/irc.scm (epic5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-12-08 22:36:15 +02:00
Efraim Flashner c32f0e3059
gnu: enlightenment: Update to 0.21.4.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.4.
2016-12-08 21:45:37 +02:00
Efraim Flashner 80a92a0fb5
gnu: efl: Update to 1.18.4.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.4.
2016-12-08 21:45:37 +02:00
Efraim Flashner 256470325b
gnu: tor: Update to 0.2.8.11.
* gnu/packages/tor.scm (tor): Update to 0.2.8.11.
2016-12-08 21:45:33 +02:00
Leo Famulari cb5a32c022
gnu: imagemagick: Update to 6.9.6-7.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-7.
2016-12-08 14:32:02 -05:00
Leo Famulari 57513498de
gnu: tcsh: Fix out of bounds read.
* gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[replacement]: New field.
(tcsh/fixed): New variable.
2016-12-08 13:53:36 -05:00
José Miguel Sánchez García a2c1dceadd
gnu: Add vis.
* gnu/packages/text-editors.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-12-08 15:07:34 +01:00
Marius Bakke a14061aae6
gnu: python-html5lib: Update to 1.0b10 [fixes CVE-2016-{9909,9910}].
* gnu/packages/python.scm (python-html5lib, python2-html5lib): Update to 1.0b10.
2016-12-08 13:55:46 +01:00
Ben Woodcroft 1b7f17ef90
gnu: vsearch: Update to 2.3.3.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.3.
2016-12-08 22:39:10 +10:00
Alex Kost cb72d34348
gnu: libreoffice: Add 'libreoffice' symlink.
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Adjust
'bin-install' phase to make 'libreoffice' symlink along with 'soffice'.

Co-authored-by: ng0 <ng0@libertad.pw>
2016-12-08 12:32:52 +03:00
Alex Kost a9c61335c9
gnu: Update 'geiser' hash and deprecate 'geiser-next'.
* gnu/packages/emacs.scm (geiser)[source]: Update the hash (the release
tarball was updated in place).
(geiser-next): Deprecate.
2016-12-08 12:32:52 +03:00
John Darrington 7b706a4930
gnu: Fix path to /etc/netconfig in libtirpc.
* gnu/packages/onc-rpc.scm (libtirpc) [arguments]: Replace "/etc/netconfig"
with (string-append %output "/etc/netconfig")
2016-12-08 08:30:57 +01:00
Adonay Felipe Nogueira c451474488
gnu: samba: Don't expect configuration files inside the store.
Fixes <http://bugs.gnu.org/24834>.

* gnu/packages/samba.scm (samba)[arguments]: Add --sysconfdir configure flag.
Add 'disable-etc-samba-directory-creation' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-08 00:28:47 +01:00
José Miguel Sánchez García 35cdc267ae
gnu: Add lua-lpeg.
* gnu/packages/lua.scm (lua-lpeg): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 23:20:24 +01:00
José Miguel Sánchez García db913ac431
gnu: Add libtermkey.
* gnu/packages/terminals.scm (libtermkey): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 23:09:49 +01:00
Ludovic Courtès 3593e5d5c5
gnu: cross-base: Move phases to (gnu build cross-toolchain).
* gnu/packages/cross-base.scm (cross-gcc-arguments) <#:phases>: Use
'cross-gcc-build-phases', and move body cross-toolchain.scm.
(cross-gcc): Add #:imported-modules.  Add (gnu build cross-toolchain) to
 #:modules.
* gnu/build/cross-toolchain.scm: New file, with code from
'cross-gcc-arguments'.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-12-07 21:52:26 +01:00
Ludovic Courtès 3009a9e451
gnu: cross-base: Factorize list of cross environment variables.
* gnu/packages/cross-base.scm (cross-libc): Replace literal list of
environment variable names with %GCC-CROSS-INCLUDE-PATHS.
(cross-kernel-headers): Likewise.
2016-12-07 21:52:26 +01:00
Efraim Flashner 8a3ce2c7b0
gnu: ams-lv2: Remove CPU optimization flags on non-Intel hardware.
* gnu/packages/music.scm (ams-lv2)[arguments]: Add phase to remove
Intel specific CPU optimization flags when compiling on non-Intel
hardware.
2016-12-07 21:38:43 +02:00
Danny Milosavljevic bb4b17064d
gnu: python-sqlalchemy-utils: Update to 0.32.11.
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.11.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 18:51:46 +01:00
Danny Milosavljevic 1ed21519f7
gnu: Add python-sadisplay.
* gnu/packages/python.scm (python-sadisplay, python2-sadisplay): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-07 14:20:46 +01:00
Efraim Flashner 491f291892
gnu: subversion: Update to 1.8.17.
* gnu/packages/version-control.scm (subversion): Update to 1.8.17.
2016-12-07 13:15:06 +02:00
Manolis Ragkousis f13f60cb26
gnu: make-bootstrap: Produce the correct %glibc-bootstrap-tarball for Hurd systems.
* gnu/packages/make-bootstrap.scm (%glibc-bootstrap-tarball): Make it a procedure.
  (%glibc-stripped): Make it a procedure and move the kernel specific part from
  here to ...
* guix/build/make-bootstrap.scm (make-stripped-libc): ... here. New file.
* Makefile.am (MODULES): Add it.
2016-12-07 12:59:02 +02:00
Manolis Ragkousis 1ecb7be8b7
gnu: cross-kernel-headers: Remove propagated-inputs from xhurd-headers.
* gnu/packages/cross-base.scm (xhurd-headers)[propagated-inputs]: Remove them.
2016-12-07 12:56:02 +02:00
Jan Nieuwenhuizen 88da729ff7
gnu: guile-2.0: support mingw.
* gnu/packages/guile.scm (guile-2.0): Support MinGW.
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen ae12d58627
gnu: readline: support mingw.
* gnu/packages/patches/readline-7.0-mingw.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline): Support MinGW.
2016-12-07 10:23:17 +01:00
Mark H Weaver d230cf61f6
gnu: ncurses: support mingw.
* gnu/packages/ncurses.scm (ncurses): Support MinGW.

Co-Authored-By: Jan Nieuwenhuizen <janneke@gnu.org>
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen 7f1c32f0e6
gnu: gmp: build shared library for mingw.
* gnu/packages/multiprecision.scm (gmp)[MINGW]: Use --enable-shared.
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen d788fcd3ba
gnu: libunistring: support mingw: propagate libiconv if needed.
* gnu/packages/libunistring (libunistring): propagated-inputs: add
libiconv-if-needed.  Fixes unicode translation in MinGW.
2016-12-07 10:23:17 +01:00
Jan Nieuwenhuizen 4dab8c5906
gnu: Add function libiconv-if-needed.
* gnu/packages/base.scm (libiconv-if-needed): New function.
2016-12-07 10:23:16 +01:00
Jan Nieuwenhuizen cba36e6482
gnu: cross-base: Add i686-w64-mingw32 target.
* guix/utils.scm (mingw-target?): New function.
* gnu/packages/cross-base.scm (cross-gcc-snippet): New procedure
(cross-gcc): Use it.
(cross-gcc-arguments, cross-gcc-patches, cross-gcc): Support MinGW.
(native-libc, cross-newlib?): New functions.
(cross-libc): Use cross-newlib? to support MinGW.
(%gcc-include-paths, %gcc-cross-include-paths): New variables.
2016-12-07 10:23:16 +01:00
Jan Nieuwenhuizen cf0ef075c4
gnu: Add mingw-w64.
* gnu/packages/patches/gcc-4.9.3-mingw-gthr-default.patch,
gnu/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch,
gnu/packages/mingw.scm: New files.
* gnu/local.mk (dist_patch_DATA): Add the patches.
(GNU_SYSTEM_MODULES): Add mingw.scm.
2016-12-07 10:23:16 +01:00
Ricardo Wurmus 4908ae4847
gnu: zynaddsubfx: Update to 3.0.1.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.1.
2016-12-07 10:13:04 +01:00
Efraim Flashner 4ff71cac67
gnu: libx264: Update to 20161205-2245.
* gnu/packages/video.scm (libx264): Update to 20161205-2245.
[source]: Use https.
[home-page]: Same.
2016-12-07 07:33:23 +02:00
Leo Famulari 425fabfc9a
gnu: radicale: Skip the test suite.
* gnu/packages/dav.scm (radicale)[arguments]: Skip the tests.
2016-12-06 20:46:18 -05:00
Efraim Flashner 37479058a1
gnu: ffmpeg: Update to 3.2.2.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.2.
2016-12-06 20:48:56 +02:00
Ricardo Wurmus 61c71171a2
gnu: emacs-expand-region: Update to 0.11.0.
* gnu/packages/emacs.scm (emacs-expand-region): Update to 0.11.0.
2016-12-06 16:14:53 +01:00
Efraim Flashner 1ebe49f192
gnu: httpd: Add fix for CVE-2016-8740.
* gnu/packages/web.scm (httpd)[source]: Add patch for CVE-2016-8740.
* gnu/packages/patches/httpd-CVE-2016-8740.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-12-06 15:39:25 +02:00
Hartmut Goebel 3a735ecf0e
gnu: python2-notebook: Fix build.
* gnu/packages/python.scm (python2-notebook)[properties]: Add
python2-variant.
(python2-notebook)[native-packages] add python2-mock. [arguments] Add
phase "disable-test-case" for disabling a failing test. immediately
2016-12-06 11:30:15 +01:00
Hartmut Goebel c4abbac349
gnu: python-ipython-genutils: Update description.
* gnu/packages/python.scm (python-ipython-genutils)[description]: Add
deprecation note and TODO comment.
2016-12-06 11:29:37 +01:00
Hartmut Goebel 4dbc8ec483
gnu: python-ipython: Update to 4.0.3
* gnu/packages/python.scm (python-ipython, python2-ipython): Update to
version 4.0.3.
2016-12-06 11:29:35 +01:00
Ricardo Wurmus 5a66e25ce6
gnu: Add seq24.
* gnu/packages/music.scm (seq24): New variable.
* gnu/packages/patches/seq24-rename-mutex.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
2016-12-06 10:15:49 +01:00
Efraim Flashner 24420005ec
gnu: links: Update to 2.14.
* gnu/packages/links.scm (links): Update to 2.14.
2016-12-06 10:11:27 +02:00
Jan Nieuwenhuizen 590abe010b
gnu: Add openh264.
* gnu/packages/video.scm (openh264): New variable.
2016-12-06 10:11:18 +02:00
Ludovic Courtès 40f2d1bc3b
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 8d125c.
2016-12-06 01:24:06 +01:00
Ludovic Courtès 8243951ef1
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to e11c42f.
2016-12-06 00:24:24 +01:00
Leo Famulari 4bd391f557
gnu: i3-wm: Update to 4.13.
* gnu/packages/wm.scm (i3-wm): Update to 4.13.
[arguments]: Pass '-std=c11' to #:make-flags. Provide path to XML_CATALOG_FILES.
Pass '--disable-builddir' to #:configure-flags. Re-enable the 'configure' phase
to adjust to new Autotools build system.
[inputs]: Add xcb-util-xrm.
[native-inputs]: Add docbook-xsl.
2016-12-05 17:09:15 -05:00
Leo Famulari 81f4f1051f
gnu: xcb-util-cursor: Propagate dependencies from 'xcb-cursor.pc'.
* gnu/packages/xorg.scm (xcb-util-cursor)[inputs]: Move xcb-util-renderutil and
xcb-util-image to ...
[propagated-inputs]: ... here.
2016-12-05 17:09:15 -05:00
Leo Famulari 6e02766d43
gnu: ruby-2.2, ruby-2.1, ruby-1.8: Don't replace with ruby-2.3.3.
* gnu/packages/ruby.scm (ruby-2.2, ruby-2.1, ruby-1.8)[replacement]: New field.
2016-12-05 16:41:23 -05:00
Ludovic Courtès 3a6a563228
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 9328eaf.
2016-12-05 21:09:02 +01:00
Tobias Geerinckx-Rice c0cc805e3f
gnu: fuse-exfat: Update to 1.2.5.
* gnu/packages/linux.scm (fuse-exfat): Update to 1.2.5.
[native-inputs]: Remove scons build system which is no longer used.
[arguments]: Remove.
[home-page]: Replace dead Google Code home page.
2016-12-05 20:33:31 +01:00
Tobias Geerinckx-Rice 694f485b47
gnu: exfat-utils: Update to 1.2.5.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.5.
2016-12-05 20:33:31 +01:00
Tobias Geerinckx-Rice 8975d00cd6
gnu: Add mktorrent.
* gnu/packages/bittorrent.scm (mktorrent): New variable.
2016-12-05 20:33:30 +01:00
Leo Famulari 8f35c03061
gnu: python-flask: Propagate python-click.
* gnu/packages/python.scm (python-flask, python2-flask)[native-inputs]: Move
python-click to ...
[propagated-inputs]: ... here.
2016-12-04 19:27:47 -05:00
Ludovic Courtès 95088559a9
gnu: shepherd: Update to 0.3.2.
* gnu/packages/admin.scm (shepherd): Update to 0.3.2.
[properties]: New field.
2016-12-04 22:32:47 +01:00
Marius Bakke 222222be63
gnu: vim: Update to 8.0.0124.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0124.
2016-12-04 22:25:30 +01:00
Tobias Geerinckx-Rice c8608faf14
gnu: dovecot: Update to 2.2.27.
* gnu/packages/mail.scm (dovecot): Update to 2.2.27.
[source, home-page]: Use HTTPS.
2016-12-04 22:15:02 +01:00
Tobias Geerinckx-Rice 9865a15057
gnu: vim: Update to 8.0.0118.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0118.
2016-12-04 22:15:02 +01:00
Ricardo Wurmus b3410b44b2
gnu: Add qmidiarp.
* gnu/packages/music.scm (qmidiarp): New variable.
2016-12-04 20:52:51 +01:00
Christopher Andersson 4cf9f57b0e
gnu: Add Swedish Aspell dictionary.
* gnu/packages/aspell.scm (aspell-dict-sv): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-04 19:05:06 +01:00
Marius Bakke 76bbce6af2
gnu: mupdf: Update to 1.10a.
* gnu/packages/patches/mupdf-CVE-2016-6265.patch: Delete file.
* gnu/packages/patches/mupdf-CVE-2016-6525.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7504.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7505.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7506.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7563.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-7564.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-9017.patch: Likewise.
* gnu/packages/patches/mupdf-CVE-2016-9136.patch: Likewise.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Adjust to 1.10a.
* gnu/local.mk (dist_patch_DATA): Remove deleted patches.
* gnu/packages/pdf.scm (mupdf): Update to 1.10a.
[source]: Remove patches.
2016-12-04 17:41:54 +01:00
Marius Bakke a351fc8369
Merge branch 'master' into staging 2016-12-04 17:41:36 +01:00
Alex Kost d1a5b20081
gnu: Move image viewers to (gnu packages image-viewers).
* gnu/packages/feh.scm (feh): Remove file.  Move package to...
* gnu/packages/geeqie.scm (geeqie): Likewise...
* gnu/packages/sxiv.scm (sxiv): Likewise...
* gnu/packages/image-viewers.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove files.
2016-12-04 17:42:05 +03:00
Alex Kost 023f0fb06e
gnu: exiv2: Move to (gnu packages image).
* gnu/packages/geeqie.scm (exiv2): Move to...
* gnu/packages/image.scm: ... here.
* gnu/packages/gnome.scm: Adjust the used modules.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gps.scm: Likewise.
2016-12-04 17:39:48 +03:00
Alex Kost c3a10d30d1
gnu: emms: Update to 4.2.
* gnu/packages/emacs.scm (emms): Update to 4.2.
[arguments]: EMMS installs "emms-print-metadata" now but assumes that
BINDIR exists, so do not install it manually in 'post-install' phase,
and make "/bin" directory in 'pre-install' phase.
2016-12-04 17:39:48 +03:00
Alex Kost c44ec4a8b4
gnu: emacs-with-editor: Update to 2.5.6.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.6.
2016-12-04 17:39:48 +03:00
Alex Kost 4e0d9fce5a
gnu: emacs-hl-todo: Update to 1.7.4.
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.7.4.
2016-12-04 17:39:47 +03:00
Ricardo Wurmus 951581a2d6
gnu: Add ingen.
* gnu/packages/music.scm (ingen): New variable.
2016-12-04 11:24:24 +01:00
Ricardo Wurmus f91d0d08dd
gnu: Add raul-devel.
* gnu/packages/audio.scm (raul-devel): New variable.
2016-12-04 11:17:46 +01:00
Ricardo Wurmus a9276c12ba
gnu: Add ganv-devel.
* gnu/packages/gtk.scm (ganv-devel): New variable.
2016-12-04 11:17:45 +01:00
Ricardo Wurmus 849c3d03f0
gnu: Add ams-lv2.
* gnu/packages/music.scm (ams-lv2): New variable.
2016-12-04 10:16:37 +01:00
Ricardo Wurmus 85f4863f3b
gnu: lvtk: Build UI library.
* gnu/packages/audio.scm (lvtk)[inputs]: Add gtkmm-2.
[arguments]: Pass "-std=c++11" flag.
2016-12-04 10:16:37 +01:00
Efraim Flashner 8a610eb605
gnu: Fix header in (gnu packages golang).
* gnu/packages/golang.scm: Replace header line declaring this file as
part of GNU Guix.
2016-12-04 08:50:30 +02:00
Efraim Flashner 8c15851717
gnu: Add econnman.
* gnu/packages/connman.scm (econnman): New variable.
2016-12-04 08:39:49 +02:00
Efraim Flashner 22fda787f6
gnu: Add lekha.
* gnu/packages/enlightenment.scm (lekha): New variable.
2016-12-04 08:39:49 +02:00
Efraim Flashner cf3504c69c
gnu: Add qsyncthingtray.
* gnu/packages/sync.scm (qsyncthingtray): New variable.
2016-12-04 08:39:48 +02:00
Efraim Flashner 760d6066f7
gnu: Rename owncloud.scm to sync.scm.
* gnu/packages/owncloud.scm: Rename to ...
* gnu/packages/sync.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2016-12-04 08:39:48 +02:00
Efraim Flashner 7526edb9d5
gnu: Add rkflashtool.
* gnu/packages/flashing-tools.scm (rkflashtool): New variable.
2016-12-04 08:39:48 +02:00
Efraim Flashner c7ad32d94a
gnu: uget: Add missing input.
* gnu/packages/bittorrent.scm (uget)[native-inputs]: Add intltool.
2016-12-04 08:39:48 +02:00
Efraim Flashner 12ed023fb7
gnu: tor: Update to 0.2.8.10.
* gnu/packages/tor.scm (tor): Update to 0.2.8.10.
2016-12-04 08:39:48 +02:00
Leo Famulari 4b569a4ff5
gnu: acme-client: Update to 0.1.15.
* gnu/packages/tls.scm (acme-client): Update to 0.1.15.
[native-inputs]: Add pkg-config.
2016-12-03 23:28:22 -05:00
Leo Famulari b172196976
gnu: taglib: Update to 1.10.
* gnu/packages/mp3.scm (taglib): Update to 1.10.
2016-12-03 20:52:00 -05:00
Ben Woodcroft e990c81d38
gnu: aragorn: Update to 1.2.38.
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.38.
2016-12-04 10:51:54 +10:00
Ricardo Wurmus 57b94e9d8d
gnu: Add highlight.
* gnu/packages/pretty-print.scm (highlight): New variable.
2016-12-03 23:26:16 +01:00
Ricardo Wurmus 3bec8a016f
gnu: git: Fix gitweb.
* gnu/packages/version-control.scm (git)[inputs]: Add perl-cgi.
[arguments]: Wrap "gitweb.cgi" with PERL5LIB.
2016-12-03 20:11:37 +01:00
Thomas Danckaert aa8c0ada2e
gnu: Add grantlee.
* gnu/packages/qt.scm (grantlee): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-03 18:55:01 +01:00
Thomas Danckaert f447dbc796
gnu: Add libksysguard.
* gnu/packages/kde.scm (libksysguard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-03 18:55:01 +01:00
Efraim Flashner d54c0bfde4
gnu: libunistring: Update to 0.9.7.
* gnu/packages/libunistring.scm (libunistring): Update to 0.9.7.
[home-page]: Use https.
[license]: License has changed to dual lgpl3+ gpl2.
2016-12-03 19:35:27 +02:00
Mark H Weaver 5bdec7d634
gnu: icecat: Update to 45.5.1-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 45.5.1-gnu1.
[source]: Remove temporary URI for 45.3 beta.  Fix URI computation.  Remove
outdated patches.  Add more cherry-picked bug fixes from upstream
mozilla-esr45.  Use 'list' instead of quasiquote in 'patches' field.
2016-12-03 12:29:53 -05:00
Ricardo Wurmus 9bad404355
gnu: Add fcgiwrap.
* gnu/packages/web.scm (fcgiwrap): New variable.
2016-12-03 17:06:51 +01:00
Ricardo Wurmus ab519cfa3d
gnu: Add fcgi.
* gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch: New file.
* gnu/packages/patches/fcgi-2.4.0-poll.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
* gnu/packages/web.scm (fcgi): New variable.
2016-12-03 17:06:47 +01:00
Efraim Flashner bec5022ffe
gnu: coreutils: Update to 8.26.
* gnu/packages/base.scm (coreutils): Update to 8.26.
2016-12-03 17:30:33 +02:00
Mark H Weaver e9913f8271
gnu: linux-libre: Update to 4.8.12.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.12.
2016-12-03 10:20:59 -05:00
Mark H Weaver bc6d461249
gnu: linux-libre@4.4: Update to 4.4.36.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.36.
2016-12-03 10:20:00 -05:00
Mark H Weaver 80a359f293
gnu: linux-libre@4.1: Update to 4.1.36.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.36.
2016-12-03 10:19:08 -05:00
Ludovic Courtès 020434d497
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 463fb7d.
2016-12-03 12:05:32 +01:00
Leo Famulari a6c4790567
gnu: python-cryptography: Update to 1.6.
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
to 1.6.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.6.
2016-12-03 02:39:09 -05:00
David Craven 83dcfa72d4
gnu: flex: Update to 2.6.2.
* gnu/packages/flex.scm (flex): Update to 2.6.2.
  [native-inputs]: Add help2man.
  [origin]: Update uri to github. Remove CVE-2016-6354 patch.
  (flex-2.6.1): Remove variable.
* gnu/packages/patches/flex-CVE-2016-6354.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Update.
* gnu/packages/kde-frameworks.scm (solid, kservice)[native-inputs]: Use
  flex.
2016-12-02 21:28:05 +01:00
Leo Famulari 80b63e670e
gnu: tzdata: Update to 2016j.
* gnu/packages/base.scm (tzdata): Update to 2016j.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-12-02 13:16:35 -05:00
Hartmut Goebel 447b9473cb
gnu: dblatex: Update comment.
* gnu/packages/docbook.scm (dblatex)[arguments]: Detail comment about why
the use of setuptools needs to be disabled.
2016-12-02 18:07:36 +01:00
Hartmut Goebel b0aa6ede25
gnu: python-numpy: Fix inputs.
This fixes 2efabc5589, where some inputs
have been changed to propagated-inputs, but the propagated-inputs are
still extended from inputs and the inputs are not extended at all.

* gnu/packages/python.scm (python-numpy, python2-numpy)[inputs]:
Extend from python-numpy-bootstrap's package-inputs. [propagated-inputs]:
Extend from python-numpy-bootstrap's package-propagated-inputs.
2016-12-02 18:07:36 +01:00
Hartmut Goebel 77a6932adf
gnu: python2-ipython: Fix inputs.
This fixes e62600feb6, where the inputs
have been changed to native-inputs, but still extended from inputs.

* gnu/packages/python.scm (python2-ipython)[native-inputs]: Extend
from python-ipython's package-native-inputs.
2016-12-02 18:07:36 +01:00
Hartmut Goebel fe4a8da445
gnu: python-numpydoc: Correct inputs.
This does what 213d1745c6 was
supposed to do.

* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
Change first of the duplicate [native-inputs] definitions to
[propagated-inputs].
2016-12-02 18:07:36 +01:00
Hartmut Goebel e89aceab63
gnu: calibre: Do not use python setuptools for building.
* gnu/packages/ebook.scm (calibre)[arguments]: Set #:use-setuptools?
to false.
2016-12-02 18:07:36 +01:00
Marius Bakke d24727c019
gnu: Add dnscrypt-proxy.
* gnu/packages/dns.scm (dnscrypt-proxy): New variable.
2016-12-02 16:58:58 +01:00
Marius Bakke afe62a8bfb
gnu: Add dnscrypt-wrapper.
* gnu/packages/dns.scm (dnscrypt-wrapper): New variable.
2016-12-02 16:58:31 +01:00
Marius Bakke 5834a405ea
gnu: virt-manager: Do not use python setuptools for building.
* gnu/packages/qemu.scm (virt-manager)[arguments]: Set #use-setuptools? to #f.
2016-12-02 13:27:09 +01:00
Marius Bakke a189ac715d
gnu: bluez: Update to 5.43.
* gnu/packages/linux.scm (bluez): Update to 5.43.
2016-12-02 13:08:11 +01:00
Marius Bakke 17f2b485b1
gnu: mesa: Update to 13.0.2.
* gnu/packages/gl.scm (mesa): Update to 13.0.2.
[inputs]: Remove eudev.
[native-inputs]: Move 'mesa-wayland-egl-symbols-check-mips.patch' to ...
[source]: ... here.
[arguments]: Don't apply patch. Remove udev substitution.
2016-12-02 12:16:15 +01:00
Marius Bakke 2028be238b
gnu: dblatex: Update to 0.3.9.
* gnu/packages/docbook.scm (dblatex): Update to 0.3.9.
2016-12-02 12:01:42 +01:00
Marius Bakke 000c5a1163
gnu: libsigc++: Update to 2.10.0.
* gnu/packages/glib.scm (libsigc++): Update to 2.10.0.
2016-12-02 11:40:41 +01:00
Leo Famulari cb8edaac35
gnu: go-1.7: Update to 1.7.4 [security fixes].
* gnu/packages/golang.scm (go-1.7): Update to 1.7.4.
2016-12-02 03:52:06 -05:00
Eric Bavier 786b66ef75
gnu: vtk: Build with more system libraries.
* gnu/packages/vtk.scm (vtk)[inputs]: Add expat, freetype, hdf5, jpeg,
png, tiff, jsoncpp, libogg, libtheora, and zlib.
[arguments]: Use #:build-type keyword.  Add cmake flags for system
libraries.
2016-12-01 23:50:17 -06:00
Eric Bavier 0e988a8483
gnu: vtk: Upgrade to 7.1.0.
* gnu/packages/vtk.scm (vtk): Upgrade to 7.1.0.
[source]: Remove patches.  Use version-major+minor.
* gnu/packages/patches/vtk-mesa-10.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01 23:50:17 -06:00
Eric Bavier 996f5ece8c
gnu: jsoncpp: Build shared libraries.
* gnu/packages/serialization.scm (jsoncpp)[arguments]: New field.
2016-12-01 23:50:17 -06:00
Eric Bavier a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1.
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this.  Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
2016-12-01 23:50:09 -06:00
Efraim Flashner b45baef156
gnu: offlineimap: Update to 7.0.12.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.12.
2016-12-02 07:41:03 +02:00
Marius Bakke 3cc0342b45
gnu: dblatex: Do not use python setuptools for building.
* gnu/packages/docbook.scm (dblatex)[arguments]: Set #:use-setuptools?
to false.
2016-12-01 23:43:37 +01:00
Tomáš Čech 4b67098d9a
gnu: Add uget.
* gnu/packages/bittorrent.scm (uget): New variable.
2016-12-01 21:05:20 +01:00
David Thompson 02ecdeaa02
gnu: ardour: Update to 5.5.
* gnu/packages/audio.scm (ardour): Update to 5.5.
2016-12-01 13:22:24 -05:00
Efraim Flashner 329e432d60
gnu: python-gst: Update to 1.10.2.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.2.
2016-12-01 12:56:23 +02:00
Efraim Flashner 68c2ab8c22
gnu: gst-libav: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.2.
2016-12-01 12:55:45 +02:00
Efraim Flashner acc4d15c0d
gnu: gst-plugins-ugly: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.2.
2016-12-01 12:55:09 +02:00
Efraim Flashner 3103a71f65
gnu: gst-plugins-bad: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.2.
2016-12-01 12:54:19 +02:00
Efraim Flashner 1742132fb1
gnu: gst-plugins-good: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.2.
[source]: Remove patches.
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-01 12:53:30 +02:00
Efraim Flashner 2f0b72af50
gnu: gst-plugins-base: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.2.
2016-12-01 12:50:30 +02:00
Efraim Flashner a8ce5851ce
gnu: gstreamer: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.2.
2016-12-01 12:49:32 +02:00
Efraim Flashner d0b9c34fb3
gnu: perl-catalyst-action-rest: Change to new uri.
This is a followup to abafd66d04.

* gnu/packages/web.scm (perl-catalyst-action-rest)[source]: Update to
new source uri.
2016-12-01 12:44:44 +02:00
Efraim Flashner 9469275790
gnu: perl-catalyst-view-tt: Change source uri.
This is a followup to 776ca1cb22.

* gnu/packages/web.scm (perl-catalyst-view-tt)[source]: Change to new
source uri.
2016-12-01 12:44:44 +02:00
Efraim Flashner 08af1a420a
gnu: perl-http-server-simple: Change source uri.
This is a followup to 5b3646f100.

* gnu/packages/web.scm (perl-http-server-simple)[source]: Update to new
source uri.
2016-12-01 12:44:43 +02:00
Ricardo Wurmus 084f8e0435
gnu: perl-http-message: Update URLs.
* gnu/packages/web.scm (perl-http-message)[source]: Update URL.
[home-page]: Likewise.
2016-12-01 11:07:13 +01:00
Efraim Flashner 8e9badce00
gnu: nasm: Update to 2.12.02.
* gnu/packages/assembly.scm (nasm): Update to 2.12.02.
2016-12-01 10:50:46 +02:00
Efraim Flashner 161fb9be8e
gnu: nasm: Switch patch to phase.
* gnu/packages/assembly.scm (nasm)[source]: Remove patch.
[arguments]: Disable ps and pdf doc outputs in new phase.
* gnu/packages/patches/nasm-no-ps-pdf.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01 10:47:29 +02:00
Efraim Flashner 4181c9393d
gnu: nasm: Allow building on all systems.
* gnu/packages/assembly.scm (nasm)[supported-systems]: Remove field.
2016-12-01 09:46:56 +02:00
Mark H Weaver 9689e71d2f
gnu: icecat: Add fixes for CVE-2016-9079 and other bugs.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
CVE-2016-9079 and other selected fixes from the upstream mozilla-esr45
repository.
2016-11-30 20:51:05 -05:00
Mark H Weaver a9427ce556
gnu: linux-libre: Update to 4.8.11.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.11.
2016-11-30 20:24:07 -05:00
Mark H Weaver 7d9df7ca22
gnu: linux-libre@4.4: Update to 4.4.35.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.35.
2016-11-30 20:23:11 -05:00
Tobias Geerinckx-Rice e0593466a1
gnu: btrfs-progs: Update to 4.8.5.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.5.
2016-12-01 01:42:30 +01:00
Ludovic Courtès d30e578a00
gnu: Add Nagios.
* gnu/packages/monitoring.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-30 23:31:03 +01:00
Efraim Flashner ee264bbf90
gnu: perl-http-tiny: Update to 0.070.
* gnu/packages/web.scm (perl-http-tiny): Update to 0.070.
[propagated-inputs]: Add perl-mozilla-ca.
2016-11-30 21:45:18 +02:00
Efraim Flashner 5b3646f100
gnu: perl-http-server-simple: Update to 0.51.
* gnu/packages/web.scm (perl-http-server-simple): Update to 0.51.
2016-11-30 21:39:51 +02:00
Efraim Flashner a8a7227b7d
gnu: perl-http-message: Update to 6.11.
* gnu/packages/web.scm (perl-http-message): Update to 6.11.
[propagated-inputs]: Add perl-encode-locale.
2016-11-30 21:37:10 +02:00
Efraim Flashner 1ade054c2e
gnu: perl-http-cookiejar: Update to 0.008.
* gnu/packages/web.scm (perl-http-cookiejar): Update to 0.008.
[native-inputs]: Add perl-uri.
2016-11-30 21:33:05 +02:00
Efraim Flashner fb332b15aa
gnu: perl-libwww: Update to 6.15.
* gnu/packages/web.scm (perl-libwww): Update to 6.15.
[propagated-inputs]: Add perl-http-date, perl-http-message, perl-uri.
2016-11-30 21:26:50 +02:00
Efraim Flashner 1bb8ca409a
gnu: perl-http-body: Update to 1.22.
* gnu/packages/web.scm (perl-http-body): Update to 1.22.
2016-11-30 21:26:50 +02:00
Efraim Flashner 3700b27dc6
gnu: perl-html-parser: Update to 3.72.
* gnu/packages/web.scm (perl-html-parser): Update to 3.72.
[inputs]: Add perl-http-message.
2016-11-30 21:26:49 +02:00
Efraim Flashner 97c0cfdc3f
gnu: perl-finance-quote: Update to 1.38.
* gnu/packages/web.scm (perl-finance-quote): Update to 1.38.
2016-11-30 21:26:49 +02:00
Efraim Flashner 85b9c18b1a
gnu: perl-encode-locale: Update to 1.05.
* gnu/packages/web.scm (perl-encode-locale): Update to 1.05.
2016-11-30 21:26:48 +02:00
Efraim Flashner caa0194434
gnu: perl-cgi: Update to 4.35.
* gnu/packages/web.scm (perl-cgi): Update to 4.35.
2016-11-30 21:26:48 +02:00
Efraim Flashner 776ca1cb22
gnu: perl-catalyst-view-tt: Update to 0.44.
* gnu/packages/web.scm (perl-catalyst-view-tt): Update to 0.44.
[propagated-inputs]: Add perl-data-dump.
2016-11-30 21:26:48 +02:00
Efraim Flashner 0018eb57c9
gnu: perl-catalyst-view-json: Update to 0.36.
* gnu/packages/web.scm (perl-catalyst-view-json): Update to 0.36.
2016-11-30 21:26:48 +02:00
Efraim Flashner e8b20020ba
gnu: perl-catalyst-plugin-session: Update to 0.40.
* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.40.
[propagated-inputs]: Add perl-mro-compat.
2016-11-30 21:26:47 +02:00
Efraim Flashner 9fc4145211
gnu: perl-catalyst-plugin-accesslog: Update to 1.10.
* gnu/packages/web.scm (perl-catalyst-plugin-accesslog): Update to 1.10.
[arguments]: Enable tests.
2016-11-30 21:26:47 +02:00
Efraim Flashner abafd66d04
gnu: perl-catalyst-action-rest: Update to 1.20.
* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.20.
[propagated-inputs]: Add perl-config-general, perl-cpanel-json-xs,
perl-xml-simple.
2016-11-30 21:26:47 +02:00
Efraim Flashner faf806dba9
gnu: perl-apache-logformat-compiler: Update to 0.33.
* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.33.
2016-11-30 21:26:47 +02:00
Efraim Flashner 1b49fc8fc3
gnu: perl-email-sender: Update to 1.300028.
* gnu/packages/mail.scm (perl-email-sender): Update to 1.300028.
2016-11-30 21:26:46 +02:00
Efraim Flashner 47b4cedf5d
gnu: perl-xml-xpath: Update to 1.40.
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.40.
2016-11-30 21:26:46 +02:00
Efraim Flashner 28a3b6b42c
gnu: perl-xml-compile-wsdl11: Update to 3.05.
* gnu/packages/xml.scm (perl-xml-compile-wsdl11): Update to 3.05.
2016-11-30 21:26:46 +02:00
Efraim Flashner 0c3e27a4f4
gnu: perl-xml-compile-soap: Update to 3.20.
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.20.
2016-11-30 21:26:45 +02:00
Efraim Flashner 6b9d3f5539
gnu: perl-xml-compile-cache: Update to 1.05.
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.05.
2016-11-30 21:26:45 +02:00
Efraim Flashner 18c832b02e
gnu: perl-xml-compile: Update to 1.54.
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.54.
2016-11-30 21:26:45 +02:00
Efraim Flashner 4e5465f255
gnu: perl-xml-dom: Update to 1.46.
* gnu/packages/xml.scm (perl-xml-dom): Update to 1.46.
[propagated-inputs]: Add perl-xml-parser.
2016-11-30 21:26:45 +02:00
Efraim Flashner f3aa34cc5a
gnu: perl-xml-libxml-simple: Update to 0.97.
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.97.
2016-11-30 21:26:44 +02:00
Efraim Flashner ffbc7d6553
gnu: perl-graph-readwrite: Update to 2.09.
* gnu/packages/xml.scm (perl-graph-readwrite): Update to 2.09.
2016-11-30 21:26:44 +02:00
Efraim Flashner 467d4c85c3
gnu: perl-dbd-sqlite: Update to 1.52.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.52.
2016-11-30 21:26:44 +02:00
Efraim Flashner ebd2dbbfc1
gnu: perl-dbix-class-schema-loader: Update to 0.07046.
* gnu/packages/databases.scm (perl-dbix-class-schema-loader):
Update to 0.07046.
2016-11-30 21:26:43 +02:00
Efraim Flashner 7a462b8023
gnu: perl-dbix-class-introspectablem2m: Update to 0.001002.
* gnu/packages/databases.scm (perl-dbix-class-introspectablem2m):
Update to 0.001002.
2016-11-30 21:26:43 +02:00
Efraim Flashner 180cb81b4c
gnu: perl-dbix-class-cursor-cached: Update to 1.001004.
* gnu/packages/databases.scm (perl-dbix-class-cursor-cached):
Update to 1.001004.
2016-11-30 21:26:43 +02:00
Efraim Flashner 5d78d746af
gnu: perl-dbix-class: Update to 0.082840.
* gnu/packages/databases.scm (perl-dbix-class): Update to 0.082840.
2016-11-30 21:26:43 +02:00
Efraim Flashner f363d5d854
gnu: perl-email-simple: Update to 2.211.
* gnu/packages/mail.scm (perl-email-simple): Update to 2.211.
2016-11-30 21:26:42 +02:00
Efraim Flashner e4146b0485
gnu: perl-namespace-autoclean: Update to 0.28.
* gnu/packages/perl.scm (perl-namespace-autoclean): Update to 0.28.
2016-11-30 21:26:42 +02:00
Efraim Flashner 199bbbe1ed
gnu: perl-class-method-modifiers: Update to 2.12.
* gnu/packages/perl.scm (perl-class-method-modifiers): Update to 2.12.
2016-11-30 21:26:42 +02:00
Efraim Flashner a883ba0246
gnu: perl-email-mime-contenttype: Update to 1.018.
* gnu/packages/mail.scm (perl-email-mime-contenttype): Update to 1.018.
2016-11-30 21:26:41 +02:00
Efraim Flashner b4522b9855
gnu: perl-email-mime: Update to 1.937.
* gnu/packages/mail.scm (perl-email-mime): Update to 1.937.
2016-11-30 21:26:41 +02:00
Efraim Flashner 1fb37ef06e
gnu: perl-email-messageid: Update to 1.406.
* gnu/packages/mail.scm (perl-email-messageid): Update to 1.406.
2016-11-30 21:26:41 +02:00
Efraim Flashner 151bba2b3d
gnu: perl-email-address: Update to 1.908.
* gnu/packages/mail.scm (perl-email-address): Update to 1.908.
2016-11-30 21:26:41 +02:00
Marius Bakke bc118f1a03
gnu: cairo: Eliminate graft.
* gnu/packages/gtk.scm (cairo)[replacement]: Remove field.
[source]: Add patch from 'cairo/fixed'.
(cairo-xcb)[source]: Inherit from cairo.
[replacement]: Remove field.
(cairo/fixed): Remove variable.
* gnu/packages/pdf.scm (poppler)[inputs]: Remove cairo replacement.
2016-11-30 18:31:37 +01:00
Marius Bakke 8b6aee5f82
gnu: dbus: Update to 1.10.14.
* gnu/packages/glib.scm (dbus): Update to 1.10.14.
2016-11-30 18:26:15 +01:00
Marius Bakke 86cf191426
gnu: dbus: Eliminate graft.
* gnu/packages/glib.scm (dbus)[replacement]: Remove field.
[version]: Update to 1.10.12.
[source]: Update hash.
(dbus-1.10.12): Remove variable.
2016-11-30 18:26:05 +01:00
Marius Bakke 35bbe88b3c
gnu: pixman: Eliminate graft.
* gnu/packages/xdisorg.scm (pixman)[replacement]: Remove field.
[source]: Add patch from 'pixman/fixed'.
(pixman/fixed): Remove variable.
2016-11-30 18:25:57 +01:00
Marius Bakke 8a7cbc882a
Merge branch 'master' into staging 2016-11-30 18:24:32 +01:00
Ludovic Courtès 72f0c5ea3c
gnu: iw: Update to 4.9.
* gnu/packages/linux.scm (iw): Update to 4.9.
2016-11-30 17:35:21 +01:00
Ludovic Courtès 873c469e74
gnu: pciutils: Update to 3.5.2.
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.2.
2016-11-30 17:35:21 +01:00
Leo Famulari dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
2016-11-30 11:16:18 -05:00
Ricardo Wurmus 7edd195ac8
gnu: gcj: Conditionally apply patch for armhf.
* gnu/packages/gcc.scm (gcj)[source]: Inherit from "gcc" package.
[native-inputs]: Conditionally add arm-patch.
[arguments]: Conditionally add phase "apply-arm-patch".
2016-11-30 16:03:11 +01:00
Tobias Geerinckx-Rice 7d07e2a527
gnu: gnutls: Update 3.5.6.
* gnu/packages/tls.scm (gnutls): Update to 3.5.6.
2016-11-30 14:26:28 +01:00
Manolis Ragkousis 9b5f498def
gnu: glibc-hurd: Force mach/hurd/libpthread subdirs to build first.
* gnu/packages/base.scm (glibc/hurd)[arguments]: Replace 'build' phase.

Co-authored-by: Ludovic Court<C3><A8>s <ludo@gnu.org>
2016-11-30 15:17:38 +02:00
Leo Famulari 1d60f7c2b3
gnu: borg: Fix the test suite.
* gnu/packages/backup.scm (borg)[arguments]: Use
add-installed-pythonpath and disable tests related to FUSE.
2016-11-30 01:52:16 -05:00
Leo Famulari 663d5b5330
gnu: git: Update to 2.11.0.
* gnu/packages/version-control.scm (git): Update to 2.11.0.
2016-11-29 23:54:37 -05:00
Mathieu Lirzin 365de1e7a5
gnu: Add Cuirass.
* gnu/packages/ci.scm (cuirass): New variable.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2016-11-29 23:10:11 +01:00
David Craven 43ddcd723e
gnu: guix-0.11.0: Add guile-ssh to inputs.
* gnu/packages/package-management.scm (guile-ssh)[inputs]: Add
  guile-ssh.
  [arguments]: Add guile-ssh to GUILE_LOAD_PATH.
2016-11-29 22:40:03 +01:00
Ricardo Wurmus a19a6d3ac8
gnu: frescobaldi: Disable tests.
* gnu/packages/music.scm (frescobaldi)[arguments]: Disable tests.
2016-11-29 22:06:50 +01:00
John Darrington 660516e875
gnu: Add zzuf
* gnu/packages/debug.scm (zzuf): New variable.
2016-11-29 21:32:09 +01:00
Tobias Geerinckx-Rice 3084a99084
gnu: libxi: Update to 1.7.8.
* gnu/packages/xorg.scm (libxi): Update to 1.7.8.
2016-11-29 19:16:15 +01:00
Tobias Geerinckx-Rice 7f81d7f4a5
gnu: libxfont: Update to 1.5.2.
* gnu/packages/xorg.scm (libxfont): Update to 1.5.2.
2016-11-29 19:15:48 +01:00
Tobias Geerinckx-Rice 7e49a851b5
gnu: gphoto2, libgphoto2: Use libjpeg-turbo.
* gnu/packages/photo.scm (gphoto2, libgphoto2)[inputs]: Add libjpeg-turbo.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 9b81876f5f
gnu: spice: Use libjpeg-turbo instead of libjpeg.
* gnu/packages/spice.scm (spice)[inputs]: Use libjpeg-turbo as suggested
during the build.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 7cba7647a5
gnu: icecat: Use libjpeg-turbo instead of bundled libjpeg.
* gnu/packages/gnuzilla.scm (icecat)[source]: Remove bundled libjpeg, which
is actually libjpeg-turbo.
[inputs]: Add libjpeg-turbo.
[arguments]: Use it.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 37e05d64e4
gnu: Add libjpeg-turbo.
* gnu/packages/image.scm (libjpeg-turbo): New variable.
2016-11-29 19:15:47 +01:00
Hartmut Goebel dc2ef09ad7
gnu: kauth: Fix cmake macros to be used by other packages.
* gnu/packages/kde-framework.scm (kauth)[phases]: New phase
  fix-cmake-install-paths.
2016-11-29 19:13:40 +01:00
Hartmut Goebel 7b722e3cba
gnu: extra-cmake-modules: Always install into /lib and not into /lib64.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[phases]:
  New phase fix-lib-path.
2016-11-29 19:11:09 +01:00
Hartmut Goebel c1265fcc70
gnu: Add ksyntaxhighlighting.
* gnu/packages/kde-frameworks.scm (ksyntaxhighlighting): New variable.
2016-11-29 19:11:09 +01:00
Hartmut Goebel 7feff6f6dc
gnu: Update kde-frameworks to 5.28.
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.28.1
  (extra-cmake-modules, attica, bluez-qt, breeze-icons, kapidox,
  karchive, kcodecs, kconfig, kcoreaddons, kdbusaddons, kdnssd,
  kguiaddons, ki18n, kidletime, kitemmodels, kitemviews, kplotting,
  kwayland, kwidgetsaddons, kwindowsystem, modemmanager-qt,
  networkmanager-qt, oxygen-icons, solid, sonnet, threadweaver, kauth,
  kcompletion, kcrash, kdoctools, kfilemetadata, kimageformats,
  kjobwidgets, knotifications, kpty, kunitconversion, baloo,
  kactivities, kactivities-stats, kbookmarks, kcmutils,
  kconfigwidgets, kdeclarative, kded, kdesignerplugin, kdesu,
  kemoticons, kglobalaccel, kiconthemes, kinit, kio, knewstuff,
  knotifyconfig, kparts, kpeople, krunner, kservice, ktexteditor,
  ktextwidgets, kwallet, kxmlgui, kxmlrpcclient, plasma-framework,
  frameworkintegration): Update to 5.28.0
2016-11-29 19:11:09 +01:00
Hartmut Goebel 03e856ddf5
Merge branch 'python-build-system'. 2016-11-29 19:06:27 +01:00
Hartmut Goebel 80983df357
gnu: python2-discogs-client: Remove python2-setuptools from inputs.
* gnu/packages/music.scm (python2-discogs-client): Use simply
  "package-with-python2". Remove inheriting from python-discogs-client
  since adding python2-setuptools to [native-inputs] has been the sole
  reason for inheriting.
  (python-discogs-client) Remove the now needless [properties]
  "python2-variant".
2016-11-29 19:02:35 +01:00
Efraim Flashner 072f1e22cc
gnu: dovecot: Update to 2.2.26.0.
* gnu/packages/mail.scm (dovecot): Update to 2.2.26.0.
[arguments]: Patch shebangs in test file.
2016-11-29 19:52:21 +02:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Hartmut Goebel 2cb64f3b1b
gnu: wicd: Fix build.
* gnu/packages/wicd.scm (wicd) [arguments]: Disable installation
  via setuptools (and --single-version-externally-managed).
2016-11-29 18:39:16 +01:00
Hartmut Goebel 388606a72b
gnu: wxPython: Remove useless inputs.
* gnu/packages/wxwidgets.scm (python2-wxpython) [native-inputs]: Remove
  setuptools, which is already included in python.
2016-11-29 18:39:15 +01:00
Hartmut Goebel 6f1dcafd81
gnu: wxPython: Fix build.
* gnu/packages/wxwidgets.scm (python2-wxpython) [arguments]: Disable
  installation via setuptools (and --single-version-externally-managed).
2016-11-29 18:39:14 +01:00
Ludovic Courtès 683c5ab70a
gnu: oxygen-icons: Add 'upstream-name' property.
Fixes <http://bugs.gnu.org/25020>.
Reported by Hartmut Goebel <h.goebel@goebel-consult.de>.

* gnu/packages/kde-frameworks.scm (oxygen-icons)[properties]: New
field.
2016-11-29 16:12:32 +01:00
Efraim Flashner a409de9811
gnu: efl: Update to 1.18.3.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.3.
2016-11-29 16:12:47 +02:00
Efraim Flashner 07cda02c5b
gnu: wine: Use 'modify-phases' syntax.
* gnu/packages/wine.scm (wine)[arguments]: Use 'modify-phases' syntax.
2016-11-29 16:12:47 +02:00
Efraim Flashner 658c987fdd
gnu: wine: Update to 1.9.24.
* gnu/packages/wine.scm (wine): Update to 1.9.24.
[home-page]: Use https.
2016-11-29 16:12:41 +02:00
Ricardo Wurmus ded69d6f86
gnu: Add non-session-manager.
* gnu/packages/music.scm (non-session-manager): New variable.
2016-11-29 10:59:17 +01:00
Efraim Flashner 0944bb1a6a
gnu: offlineimap: Update to 7.0.10.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.10.
2016-11-29 11:02:39 +02:00
Efraim Flashner c51d926c74
gnu: cairo: Fix CVE-2016-9082.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb)[source]: Use patch.
[replacement]: New field, set false.
* gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be
replaced by a new custom patched cairo.
* gnu/packages/patches/cairo-CVE-2016-9082.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-11-29 09:45:48 +02:00
Efraim Flashner eb55f01821
gnu: Add viewnior.
* gnu/packages/image-viewers.scm (viewnior): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-29 09:38:33 +02:00
Efraim Flashner 22486fbea6
gnu: Add wgetpaste.
* gnu/packages/wget.scm (wgetpaste): New variable.
2016-11-29 09:35:39 +02:00
Efraim Flashner 3e757c005f
gnu: aspell-dict-en: Update to 2016.11.20-0.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.11.20-0.
2016-11-29 09:35:11 +02:00
Leo Famulari f265a3cee5
gnu: libarchive: Update to 3.2.2.
* gnu/packages/backup.scm (libarchive): Update to 3.2.2.
[source]: Remove obsolete patches.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-28 21:10:25 -05:00
Leo Famulari e673a1df29
gnu: libarchive: Fix typo in 'libarchive-safe_fprintf-buffer-overflow.patch'.
* gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch:
Use correct URL in patch documentation.
2016-11-28 21:10:19 -05:00
Marius Bakke 7c635ed6f7
gnu: perl-dbd-mysql: Update to 4.041 [security fix].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.041.
[source]: Update CPAN URI.
2016-11-28 23:05:23 +01:00
Ricardo Wurmus bd3be46e7f
gnu: Add r-gkmsvm.
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr.
* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots.
* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata.
* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 2d9fb1702f
gnu: Add r-seqgl.
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus c827f20286
gnu: Add r-chipkernels.
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools.
* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus f05c7eb48d
gnu: Add r-kernlab.
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc.
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus d71605294f
gnu: Add r-wgcna.
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster.
* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore.
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut.
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus e619a5c245
gnu: Add r-r4rna.
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams.
* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets.
* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger.
* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch.
* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-28 22:43:15 +01:00
Ricardo Wurmus eb21d24806
gnu: lv2: Update to 1.14.0.
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
2016-11-28 22:08:37 +01:00
Ricardo Wurmus 1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f.
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
2016-11-28 22:07:20 +01:00
Efraim Flashner 5e9cce55b5
gnu: ntp: Update to 4.2.8p9.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
2016-11-28 21:56:30 +02:00
Efraim Flashner d35de59b64
gnu: ntp: Fix indentation.
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
2016-11-28 20:53:14 +02:00
John Darrington f0ddc5e55b
gnu: Add editres.
* gnu/packages/xorg.scm (editres): New variable.
2016-11-28 18:22:15 +01:00
Ben Woodcroft 9926875572
gnu: Add newick-utils.
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
2016-11-28 09:00:41 +10:00
Efraim Flashner c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues].
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
2016-11-27 22:19:55 +02:00
Tobias Geerinckx-Rice f6c44a3f04
gnu: gphoto2: Update to 2.5.11.
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
2016-11-27 20:58:18 +01:00
Tobias Geerinckx-Rice 69874f5fd2
gnu: libgphoto2: Update to 2.5.11.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
2016-11-27 20:58:18 +01:00
Leo Famulari f27ec24d88
gnu: beets: Update to 1.4.1.
* gnu/packages/music.scm (beets): Update to 1.4.1.
[inputs]: Add python2-discogs-client.
2016-11-27 14:49:36 -05:00
Leo Famulari d3db5efbf9
gnu: Add python-discogs-client.
* gnu/packages/music.scm (python-discogs-client,
python2-discogs-client): New variables.
2016-11-27 14:49:36 -05:00
Leo Famulari 6782444764
gnu: python-rarfile: Update to 2.8.
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-27 14:49:35 -05:00
Leo Famulari 8c4964dd51
gnu: python-jellyfish: Update to 0.5.6.
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to
0.5.6.
2016-11-27 14:49:35 -05:00
Leo Famulari b04d9b97c4
gnu: python-pylast: Update 1.6.0.
* gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
2016-11-27 14:49:35 -05:00
Leo Famulari daedf34db9
gnu: python-musicbrainzngs: Update to 0.6.
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update
to 0.6.
[arguments]: Disable the test suites.
2016-11-27 14:49:35 -05:00
Leo Famulari 38e81a2c55
gnu: python-munkres: Update to 1.0.8.
* gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
2016-11-27 14:49:34 -05:00
Leo Famulari 4228a79e6f
gnu: python-mutagen: Update to 1.35.1.
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1.
[native-inputs]: Add python-pytest.
2016-11-27 14:49:30 -05:00
Ricardo Wurmus 1bf5a7e920
gnu: gcj: Inherit source field from "gcc".
* gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
2016-11-27 19:00:57 +01:00
Ricardo Wurmus bac6409970
gnu: gcj: Correct paths in ARM patch.
* gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
2016-11-27 18:59:54 +01:00
Marius Bakke 8c4140e49e
gnu: notmuch: Update to 0.23.3.
* gnu/packages/mail.scm (notmuch): Update to 0.23.3.
[arguments]: Re-enable previously failing tests.
2016-11-27 18:29:44 +01:00
Leo Famulari cd569f0d29
gnu: gcj: Fix typo in patch filename.
This is a followup to commit dbf8f84f15.

Reported by quigonjinn on #guix.

* gnu/packages/gcc.scm (gcj)[source]: Fix typo.
2016-11-27 10:57:33 -05:00
Danny Milosavljevic 7574cecf0f
gnu: python2-flask: Pick up python-flask's native-inputs.
* gnu/packages/python.scm (python2-flask)[native-inputs]:
  Pick up python-flask's native-inputs.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-27 13:23:53 +01:00
Marius Bakke cf7daaf5da
gnu: docbook-xsl: Update to 1.79.1.
* gnu/packages/docbook.scm (docbook-xsl): Update to 1.79.1.
2016-11-27 11:26:49 +01:00
Marius Bakke 988e1dca4b
gnu: udisks: Update to 2.1.8.
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.8.
[home-page]: Use HTTPS.
2016-11-27 11:13:50 +01:00
Maxim Cournoyer aef5055ff9
gnu: udisks: Add manpages.
* gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml
and docbook-xsl.
[arguments]: Add #:make-flags to specify XML catalog files for manuals.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-27 11:10:31 +01:00
Ricardo Wurmus dbf8f84f15
gnu: gcj: Fix build on armhf.
* gnu/packages/patches/gcj-arm-mode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gcc.scm (gcj): Add patch.
[arguments]: Delete failing tests.
2016-11-27 10:04:57 +01:00
Ricardo Wurmus 253cdd6c14
gnu: Add biber-2.5.
* gnu/packages/tex.scm (biber-2.5): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus d400068085
gnu: Add biber.
* gnu/packages/tex.scm (biber): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus ebcf74daf8
gnu: Add perl-text-bibtex.
* gnu/packages/tex.scm (perl-text-bibtex): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 93863a5e72
gnu: Add perl-xml-libxslt.
* gnu/packages/xml.scm (perl-xml-libxslt): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus df669244f9
gnu: perl-unicode-linebreak: Update to 2016.003.
* gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2016.003.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 5d2ecbffb2
gnu: Add perl-unicode-collate.
* gnu/packages/perl.scm (perl-unicode-collate): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 37e7a4929f
gnu: Add perl-unicode-normalize.
* gnu/packages/perl.scm (perl-unicode-normalize): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus dc32ee5381
gnu: Add perl-text-roman.
* gnu/packages/perl.scm (perl-text-roman): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 44c31aaae8
gnu: Add perl-text-csv-xs.
* gnu/packages/perl.scm (perl-text-csv-xs): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 0ef5191c88
gnu: Add perl-sort-key.
* gnu/packages/perl.scm (perl-sort-key): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 3521dc9293
gnu: Add perl-mozilla-ca.
* gnu/packages/perl.scm (perl-mozilla-ca): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 37115dc650
gnu: Add perl-lingua-translit.
* gnu/packages/perl.scm (perl-lingua-translit): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus e9ef394ac9
gnu: Add perl-ipc-cmd.
* gnu/packages/perl.scm (perl-ipc-cmd): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 81157cf5a7
gnu: Add perl-extutils-libbuilder.
* gnu/packages/perl.scm (perl-extutils-libbuilder): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 0185442003
gnu: Add perl-encode-hanextra.
* gnu/packages/perl.scm (perl-encode-hanextra): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 2bc1b85ce6
gnu: Add perl-encode-jis2k.
* gnu/packages/perl.scm (perl-encode-jis2k): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 891d9679a2
gnu: Add perl-encode-eucjpascii.
* gnu/packages/perl.scm (perl-encode-eucjpascii): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 49a3fcc13c
gnu: perl-encode-detect: Move to alphabetical position.
* gnu/packages/perl.scm (perl-encode-detect): Move variable definition.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 7a146c2528
gnu: Add perl-datetime-calendar-julian.
* gnu/packages/perl.scm (perl-datetime-calendar-julian): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 36dd594316
gnu: Add perl-date-simple.
* gnu/packages/perl.scm (perl-date-simple): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus cc3dafbb02
gnu: Add perl-data-uniqid.
* gnu/packages/perl.scm (perl-data-uniqid): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 9413e95f59
gnu: Add perl-data-compare.
* gnu/packages/perl.scm (perl-data-compare): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus adbf4b944c
gnu: Add perl-business-ismn.
* gnu/packages/perl.scm (perl-business-ismn): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 296663839b
gnu: Add perl-tie-cycle.
* gnu/packages/perl.scm (perl-tie-cycle): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus e0b6accf19
gnu: Add perl-business-issn.
* gnu/packages/perl.scm (perl-business-issn): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 72f8646ef5
gnu: Add perl-business-isbn.
* gnu/packages/perl.scm (perl-business-isbn): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus a3f5beb7a2
gnu: Add perl-business-isbn-data.
* gnu/packages/perl.scm (perl-business-isbn-data): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 3f1df54cc0
gnu: Add perl-autovivification.
* gnu/packages/perl.scm (perl-autovivification): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus d4ba9a5f21
gnu: Add perl-mojolicious.
* gnu/packages/perl-web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 45591fd7fd
gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host.
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): New
variables.
* gnu/packages/audio.scm (ardour)[inputs]: Replace "fftw" and "fftwf"
with "fftw-with-threads" and "fftwf-with-threads", respectively.
* gnu/packages/music.scm (mod-host)[inputs]: Likewise.
2016-11-27 09:48:16 +01:00
Efraim Flashner bd128e2e8f
gnu: mpfr: Update to 3.1.5.
* gnu/packages/multiprecision.scm (mpfr): Update to 3.1.5.
2016-11-27 10:47:06 +02:00
Efraim Flashner 51c8e2996c
gnu: sed: Use 'modify-phases' syntax.
* gnu/packages/base.scm (sed)[arguments]: Use 'modify-phases' syntax.
2016-11-27 10:25:45 +02:00
Efraim Flashner b7a5a4821f
gnu: grep: Update to 2.26.
* gnu/packages/base.scm (grep): Update to 2.26.
2016-11-27 10:23:59 +02:00
Efraim Flashner 31bd09e5a8
gnu: nettle: Update to 3.3.
* gnu/packages/nettle.scm (nettle): Update to 3.3.
[home-page]: Use https.
2016-11-27 09:44:48 +02:00
Efraim Flashner feefbb0946
gnu: bash: Update to patch level 5.
* gnu/packages/bash.scm (%patch-url-seqno): Update for bash-4.4.
(%patch-series-4.4): Add patches 1 to 5.
2016-11-27 09:24:40 +02:00
Efraim Flashner c296d5d119
gnu: icu4c: Use 'modify-phases' syntax.
* gnu/packages/icu4c.scm (icu4c)[arguments]: Use 'modify-phases' syntax.
2016-11-27 09:24:40 +02:00
Efraim Flashner 5499de02ca
gnu: icu4c: Update to 58.1.
* gnu/packages/icu4c.scm (icu4c): Update to 58.1.
[source]: Download from their website.
[arguments]: Remove extra bash replacement.
2016-11-27 09:24:40 +02:00
Leo Famulari b46cefc954
gnu: libsodium: Update to 1.0.11.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.11.
2016-11-26 20:48:34 -05:00
Tobias Geerinckx-Rice d32f4800d6
gnu: libgphoto2: Add XML support.
* gnu/packages/photo.scm (libgphoto2)[inputs]: Add libxml2.
2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice 9dcc9bbf3b
gnu: gphoto2: Update to 2.5.10.
* gnu/packages/photo.scm (gphoto2): Update to 2.5.10.
2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice 35c0ad4448
gnu: libgphoto2: Update to 2.5.10.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.10.
2016-11-27 01:43:39 +01:00
Toni Reina c3e2a2471c
gnu: Add Mozilla Fira Mono font.
* gnu/packages/fonts.scm (font-fira-mono): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-26 23:21:37 +01:00
Leo Famulari e30abbbb02
gnu: cyrus-sasl: Incorporate grafted patch.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[source]: Use
'cyrus-sasl-CVE-2013-4122.patch'.
[replacement]: Remove field.
(cyrus-sasl/fixed): Remove variable.
2016-11-26 16:23:42 -05:00
Leo Famulari a282cdae10
Merge branch 'master' into core-updates 2016-11-26 16:21:47 -05:00
Leo Famulari cd65d600ac
gnu: cyrus-sasl: Fix CVE-2013-4122.
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field.
(cyrus-sasl/fixed): New variable.
[source]: Use patch.
2016-11-26 16:21:02 -05:00
Efraim Flashner 439a2f62ce
gnu: ffmpeg: Update to 3.2.1.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.1.
2016-11-26 22:53:13 +02:00
Leo Famulari 9e46245b89
gnu: gst-plugins-good: Fix CVE-2016-{9634,9635,9636} and other security issues.
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good): Use them.
2016-11-26 14:27:24 -05:00
Leo Famulari cf3678df6e
gnu: psyclpc: Update comment.
This is a followup to commit eaa45301f4.

* gnu/packages/messaging.scm (psyclpc): Update comment.
2016-11-26 13:36:51 -05:00
ng0 ebfc2ecc3c
gnu: Move content of (gnu packages psyc) into (gnu packages messaging).
* gnu/packages/psyc.scm (perl-net-psyc, libpsyc, psyclpc): Move this ...
* gnu/packages/messaging.scm (perl-net-psyc, libpsyc, psyclpc): ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove psyc.scm.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26 13:23:46 -05:00
ng0 eaa45301f4
gnu: psyclpc: Upgrade to 20160821-2.61cf9aa.
This makes the package reproducible.

* gnu/packages/psyc.scm (psyclpc): Upgrade to 20160821-2.61cf9aa.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26 13:23:46 -05:00
Danny Milosavljevic c6c80104ab
gnu: python-flask: Update to 0.11.1.
* gnu/packages/python.scm (python-flask): Update to 0.11.1.
[native-inputs]: Add python-click.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
Danny Milosavljevic 61684de287
gnu: python-pyopenssl: Update to 16.2.0.
* gnu/packages/python.scm (python-pyopenssl): Update to 16.2.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
Danny Milosavljevic b2e6e150aa
gnu: python-simplejson: Update to 3.10.0.
* gnu/packages/python.scm (python-simplejson): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
ng0 faa29e4bdb
gnu: Add mumble.
* gnu/packages/telephony.scm (mumble): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 12:32:22 +01:00
Marius Bakke 4f55441fe3
gnu: transmission: Update to 2.92.
* gnu/packages/bittorrent.scm (transmission): Update to 2.92.
[inputs]: Add cyrus-sasl.
2016-11-26 12:32:01 +01:00
Ben Woodcroft 5e0a0f4226
gnu: roary: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (roary): Update to 3.7.0.
2016-11-26 20:15:39 +10:00
Ben Woodcroft 31a9d653ad
gnu: Add proteinortho.
* gnu/packages/bioinformatics.scm (proteinortho): New variable.
2016-11-26 20:15:37 +10:00
Julien Lepiller d3eff97afd
gnu: Add python-polib.
* gnu/packages/python.scm (python-polib, python2-polib): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 10:29:29 +01:00
Marius Bakke 3ad8cb4163
gnu: sqlite: Update to 3.15.1.
* gnu/packages/databases.scm (sqlite): Update to 3.15.1.
[source]: Download from sqlite.org.
[home-page]: Use HTTPS.
(sqlite-3.15.1): Remove.
* gnu/packages/php.scm (php)[inputs]: Change 'sqlite-3.15.1' to 'sqlite'.
2016-11-26 09:09:17 +01:00
Leo Famulari 53d892dd92
gnu: imagemagick: Update to 6.9.6-6 [fixes CVE-2016-9556].
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-6.
2016-11-26 00:38:45 -05:00
Leo Famulari 0959478c72
gnu: Add missing module import to (gnu packages ldc).
This is a followup to commit e44b511298.

* gnu/packages/ldc.scm: Import (gnu packages python).
2016-11-25 23:18:29 -05:00
Danny Milosavljevic e44b511298
gnu: ldc: Update to 0.17.2.
* gnu/packages/ldc.scm (ldc): Update to 0.17.2.
* gnu/packages/patches/ldc-disable-tests.patch: Fix timezone file name.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-25 23:54:51 +01:00
Ludovic Courtès 6634180f9e
gnu: guile-ssh: Update to 0.10.2.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.10.2.
[home-page]: Update.
[source]: Use the 'url-fetch' method and a GitHub generated
tarball.
[arguments] <autoreconf>: Remove now unneeded 'chmod' call.
2016-11-25 23:44:20 +01:00
Ricardo Wurmus 7276b5604d
gnu: hydrogen: Update to 0.9.7.
* gnu/packages/music.scm (hydrogen): Update to 0.9.7.
2016-11-25 21:44:16 +01:00
Leo Famulari c415f76302
gnu: python-betamax: Fix typo.
* gnu/packages/python.scm (python-betamax): Fix typo.
2016-11-25 11:31:43 -05:00
Leo Famulari de32aa74b4
Merge branch 'master' into python-build-system 2016-11-25 11:20:21 -05:00
Tobias Geerinckx-Rice d66cbd1adc
gnu: btrfs-progs: Update to 4.8.4.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.4.
2016-11-25 17:00:51 +01:00
Tobias Geerinckx-Rice fc89cb691d
gnu: lz4: Update to 1.7.4.2.
* gnu/packages/compression.scm (lz4): Update to 1.7.4.2.
2016-11-25 16:31:20 +01:00
Tobias Geerinckx-Rice dead1067c3
gnu: hplip: Update to 3.16.11.
* gnu/packages/cups.scm (hplip): Update to 3.16.11.
2016-11-25 16:31:10 +01:00
Ricardo Wurmus aaaf8b3844
gnu: qtractor: Update to 0.8.0.
* gnu/packages/music.scm (qtractor): Update to 0.8.0.
2016-11-25 13:08:06 +01:00
Alex Kost 1e34721435
gnu: qemu: Install all required info files.
* gnu/packages/qemu.scm (qemu)[arguments]: Adjust 'install-info' phase
to find all info files (including "*.info-N").
2016-11-25 16:09:22 +03:00
Theodoros Foradis 8f528bd442
gnu: Add kicad-library.
* gnu/packages/engineering.scm (kicad-library): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:11 -05:00
Theodoros Foradis befc9ff643
gnu: Add kicad.
* gnu/packages/engineering.scm (kicad): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:11 -05:00
Theodoros Foradis b353c7d201
gnu: Add python2-wxpython.
* gnu/packages/wxwidgets.scm (python2-wxpython): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:10 -05:00
Theodoros Foradis 2cd3b6fd03
gnu: Add wxwidgets-gtk2.
* gnu/packages/wxwidgets.scm (wxwidgets-gtk2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:10 -05:00
Leo Famulari 88d45b74c1
gnu: nginx: Update to 1.11.6.
* gnu/packages/web.scm (nginx): Update to 1.11.6.
[arguments]: Remove the obsolete option --with-ipv6 from #:configure-flags.
2016-11-25 00:07:40 -05:00
Tobias Geerinckx-Rice e0f8a520ed
gnu: miniupnpc: Improve synopsis and description.
* gnu/packages/upnp.scm (miniupnp)[synopsis, description]: Edit, fix typos,
add some relevant (search) terms from the home page, and expand acronyms.
2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice 5af82630fe
gnu: miniupnpc: Use the correct ‘upnpc’ in ‘external-ip’.
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Add ‘qualify-paths’ phase.
2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice cdbdaf7b6b
gnu: miniupnpc: Use ‘modify-phases’ syntax.
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Use ‘modify-phases’.
2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice 2d3b0203f4
gnu: miniupnpc: Update to 2.0.
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.
2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice ade5848576
gnu: vim: Update to 8.0.0101.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0101.
2016-11-25 02:21:49 +01:00
Ludovic Courtès 62126576fc
gnu: hdf5: Build the C++ interface.
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
2016-11-24 21:43:47 +01:00
Tobias Geerinckx-Rice 6f09c100d9
gnu: vim: Update to 8.0.0096.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0096.
2016-11-24 16:57:22 +01:00
Tobias Geerinckx-Rice c50f2af9f8
gnu: ir: Use archived tarball and home page.
* gnu/packages/audio.scm (ir)[source]: Use a list of archive mirrors.
[home-page]: Link to an Internet Archive snapshot.
2016-11-24 06:34:37 +01:00
Tobias Geerinckx-Rice 2df984f278
gnu: ir: Use ‘modify-phases’ syntax.
* gnu/packages/audio.scm (ir)[arguments]: Use ‘modify-phases’.
2016-11-24 06:34:37 +01:00
Leo Famulari c8d1e7a130
gnu: libgc-7.2: Remove package.
This package variant was unused.

* gnu/packages/bdw-gc.scm (libgc-7.2): Delete variable.
2016-11-23 23:11:30 -05:00
Leo Famulari 0bd1097c50
gnu: libtiff: Update to 4.0.7.
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
[native-inputs]: Add gcc-5.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-23 22:53:43 -05:00
Leo Famulari 2ac7d54616
Merge branch 'master' into staging 2016-11-23 22:24:52 -05:00
Leo Famulari 1c9f78eca1
gnu: python-passlib: Update to 1.7.0.
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.0.
2016-11-23 14:38:05 -05:00
Efraim Flashner 262c2d33bc
gnu: perl-digest-md5: Fix typo.
* gnu/packages/perl.scm (perl-digest-md5)[arguments]: Remove extra ')'.
2016-11-23 18:16:53 +02:00
ng0 8a28e717ba
gnu: Add perl-digest-md5.
* gnu/packages/perl.scm (perl-digest-md5): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-23 16:46:47 +01:00
Efraim Flashner bc05caee77
gnu: chez.scm: Add '#:use-module srfi srfi-1'.
This is a follow-up to 1e16648f82.

* gnu/packages/chez.scm: Add '#:use-module srfi srfi-1'.
2016-11-23 12:42:36 +02:00
Efraim Flashner 8553fe5734
gnu: Add aspell-dict-he.
* gnu/packages/aspell.scm (aspell-dict-he): New variable.
2016-11-23 12:38:28 +02:00
Efraim Flashner 1e16648f82
gnu: chez-scheme: Remove support for armhf.
* gnu/packages/chez.scm (chez-scheme)[supported-systems]: Remove
armhf-linux from the list of supported systems.
2016-11-23 12:37:17 +02:00
John Darrington 5ac13f9218
gnu: Update mit-krb5 to version 1.14.4.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.4
2016-11-23 07:21:28 +01:00
Leo Famulari c0bb7178be
gnu: libtiff: Update to 4.0.7.
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-23 00:17:12 -05:00
Leo Famulari de76f0a45b
Merge branch 'master' into core-updates 2016-11-23 00:11:30 -05:00
Mark H Weaver 08b3e4a970
gnu: linux-libre: Update to 4.8.10.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.10.
2016-11-22 21:59:54 -05:00
Mark H Weaver 4263eb4dd0
gnu: linux-libre@4.4: Update to 4.4.34.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.34.
2016-11-22 21:49:39 -05:00
Ludovic Courtès 66ebb5bca3
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 1f410017.
2016-11-23 00:03:18 +01:00
Ludovic Courtès 35b2f18c5f
Revert "gnu: Update mit-krb5 to version 1.14.4."
This reverts commit 2947ff6430, which
would have caused too many rebuilds for 'master'.
2016-11-23 00:03:17 +01:00
Ludovic Courtès 106b389e52
gnu: Add 'cryptsetup-static'.
* gnu/packages/cryptsetup.scm (static-library): New procedure.
(cryptsetup-static): New variable.
2016-11-22 23:45:01 +01:00
Ludovic Courtès 01f94cca19
gnu: Add 'lvm2-static'.
* gnu/packages/patches/lvm2-static-link.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (lvm2)[source](patches): New field.
(lvm2-static): New variable.
2016-11-22 22:59:31 +01:00
Ludovic Courtès 10da75dff8
gnu: grub: Add dependency on LVM2.
* gnu/packages/grub.scm (grub)[inputs]: Add LVM2.
2016-11-22 22:59:31 +01:00
Christopher Allan Webber 8957af324b
gnu: python-pyld: Update to 0.7.1.
* gnu/packages/python.scm (python-pyld): Update to 0.7.1.
2016-11-22 15:29:33 -06:00
Marius Bakke 61320932ed
gnu: harfbuzz: Update to 1.3.3.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.3.3.
[home-page]: Use HTTPS.
2016-11-22 21:46:59 +01:00
John Darrington 2947ff6430
gnu: Update mit-krb5 to version 1.14.4.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.4
2016-11-22 21:27:19 +01:00
Marius Bakke 1f410017ff
gnu: notmuch: Update to 0.23.2.
* gnu/packages/mail.scm (notmuch): Update to 0.23.2.
2016-11-22 20:44:53 +01:00
Marius Bakke 6317d36f3b
gnu: notmuch: Skip tests that fail with gnupg-2.1.16.
* gnu/packages/mail.scm (notmuch)[arguments]: Add environment variable
to skip tests that broke after gnupg-2.1.16.
2016-11-22 20:44:48 +01:00
Leo Famulari be72eb98fa
gnu: libtiff: Update replacement to 4.0.7.
* gnu/packages/image.scm (libtiff)[replacement]: Update to 4.0.7.
(libtiff-4.0.7): New variable. Update home-page and source URLs.
(libtiff/fixed): Delete variable.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch,
gnu/packages/patches/libtiff-CVE-2016-9273.patch,
gnu/packages/patches/libtiff-CVE-2016-9297.patch,
gnu/packages/patches/libtiff-CVE-2016-9448.patch,
gnu/packages/patches/libtiff-uint32-overflow.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-22 12:30:36 -05:00
Marius Bakke c70047f12d
gnu: freetype: Update to 2.7.
* gnu/packages/fontutils.scm (freetype): Update to 2.7.
[home-page]: Use HTTPS.
2016-11-22 17:50:07 +01:00
Marius Bakke d8e3bb082d
gnu: vim: Update to 8.0.0095.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0095.
2016-11-22 17:33:07 +01:00
Kei Kebreau c3cc7d412a
gnu: Add espeak.
* gnu/packages/audio.scm (espeak): New variable.
2016-11-22 11:24:41 -05:00
Eric Bavier e36a67c91a
gnu: Add openfwwf-firmware.
* gnu/packages/firmware.scm (b43-tools, openfwwf-firmware): New
variables.
2016-11-22 09:38:36 -06:00
Efraim Flashner 4a5ec78d5f
gnu: w3m: Update to 0.5.3+git20161120 [fixes security issues].
Fixes CVE-2016-9439 and others.

* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20161120.
2016-11-22 14:00:11 +02:00
Efraim Flashner 83a3e805be
gnu: w3m: Use 'modify-phases' syntax.
* gnu/packages/w3m.scm (w3m)[arguments]: Use 'modify-phases' syntax.
2016-11-22 14:00:11 +02:00
Ben Woodcroft ee7518a009
gnu: ruby: Update replacement to 2.3.3.
* gnu/packages/ruby.scm (ruby)[replacement]: Update to 2.3.3.
(ruby-2.3.2): Replace this ...
(ruby-2.3.3): ... with this.
2016-11-22 21:39:18 +10:00
Ben Woodcroft f4a8081d24
gnu: ruby: Update to 2.3.3.
* gnu/packages/ruby.scm (ruby): Update to 2.3.3.
2016-11-22 21:35:58 +10:00
Ben Woodcroft 8e5f8c98e2
gnu: diamond: Update to 0.8.27.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.27.
2016-11-22 21:01:21 +10:00
Ricardo Wurmus 1ea7969fa6
gnu: zynaddsubfx: Update to 3.0.0.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.0.
[inputs]: Add "mesa".
2016-11-22 09:47:16 +01:00
Tobias Geerinckx-Rice eec9c4a7c5
gnu: progress: Update to 0.13.1.
* gnu/packages/admin.scm (progress): Update to 0.13.1.
[native-inputs]: Add pkg-config and which.
[arguments]: Drop LDFLAGS (now handled by pkg-config) from #:make-flags.
2016-11-22 01:12:03 +01:00
Tobias Geerinckx-Rice 57742b35dc
gnu: ncurses: Install pkg-config ‘.pc’ files.
* gnu/packages/ncurses.scm (ncurses)[arguments]: Add ‘--enable-pc-files’
and ‘--with-pkg-config-libdir=’ to #:configure-flags. Create ‘non-wide’
compatibility symbolic links for ‘.pc’ files in the post-install-phase.
[native-inputs]: Add pkg-config.
2016-11-22 01:12:02 +01:00
Efraim Flashner dd3f8fe660
gnu: connman: Update to 1.33.
* gnu/packages/connman.scm (connman): Update to 1.33.
2016-11-21 23:52:19 +02:00
Petter 6e388b0839
gnu: openssl: Remove redundant use of mkdir-p.
* gnu/packages/tls.scm (openssl)[arguments]: Remove redundant (mkdir-p).

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:41:28 -05:00
Petter daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:39:54 -05:00
Leo Famulari 4b269baf44
gnu: libgc: Update to 7.6.0.
* gnu/packages/bdw-gc.scm (libgc): Update to 7.6.0.
2016-11-21 14:24:29 -05:00
Leo Famulari a8ce976fe6
gnu: libgc-7.2: Update to 7.2g.
* gnu/packages/bdw-gc.scm (libgc-7.2): Update to 7.2g.
2016-11-21 14:24:28 -05:00
Leo Famulari a373c68588
gnu: libatomic-ops: Update to 7.4.4.
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.4.4.
2016-11-21 14:17:29 -05:00
Alex Kost 7c90d0f40e
gnu: packages: Use gettext-minimal.
* gnu/packages/crypto.scm (tomb): Use 'gettext-minimal' instead of
'gnu-gettext'.
* gnu/packages/emacs.scm (m17n-db): Likewise.
* gnu/packages/ftp.scm (weex): Likewise.
* gnu/packages/games.scm (chromium-bsu): Likewise.
* gnu/packages/image.scm (steghide): Likewise.
* gnu/packages/linux.scm (radeontop): Likewise.
* gnu/packages/mpd.scm (sonata): Likewise.
* gnu/packages/networking.scm (whois): Likewise.
* gnu/packages/package-management.scm (guix-0.11.0): Likewise.
* gnu/packages/psyc.scm (psyclpc): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
* gnu/packages/vim.scm (vim-full): Likewise.
2016-11-21 19:47:30 +03:00
Hartmut Goebel 856f30b000
gnu: shared-mime-info: Update to 1.7
* gnu/packages/gnome.scm (shared-mime-info): Update to 1.7.
2016-11-21 17:17:11 +01:00
Leo Famulari dc6d1b9609
gnu: libtiff: Fix URL in 'libtiff-uint32-overflow.patch'.
* gnu/packages/patches/libtiff-uint32-overflow.patch: Fix URL.
2016-11-21 11:16:37 -05:00
Leo Famulari 6305b81fed
gnu: swig: Update to 3.0.10.
* gnu/packages/swig.scm (swig): Update to 3.0.10.
2016-11-21 11:10:06 -05:00
Ludovic Courtès c9eae83ffa
gnu: dico: Update to 2.4.
* gnu/packages/dico.scm (dico): Update to 2.4.
[source]: Remove 'snippet'.
2016-11-21 15:25:38 +01:00
Ricardo Wurmus 2316078a4e
gnu: Add emacs-emms-mode-line-cycle.
* gnu/packages/emacs.scm (emacs-emms-mode-line-cycle): New variable.
2016-11-21 11:52:26 +01:00
Efraim Flashner 83b294b6d6
gnu: opusfile: Update to 0.8.
* gnu/packages/xiph.scm (opusfile): Update to 0.8.
2016-11-21 10:49:45 +02:00
Efraim Flashner b1e25b08f2
gnu: obs: Update to 0.16.6.
* gnu/packages/video.scm (obs): Update to 0.16.6.
2016-11-21 07:14:05 +02:00
Efraim Flashner 89a30625b9
gnu: mpv: Update to 0.22.0.
* gnu/packages/video.scm (mpv): Update to 0.22.0.
2016-11-21 06:57:16 +02:00
Efraim Flashner 7ceee88c43
gnu: chez-scheme: Properly identify system architecture.
* gnu/packages/chez.dcm (chez-scheme)[arguments]: Substitute `uname -m'
for `uname -a' in configure, allowing proper identification of the
machine architecture.
2016-11-21 06:57:16 +02:00
Julien Lepiller 1845c2a436
gnu: Add php.
* gnu/packages/php.scm: New file.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch: New file.
* gnu/packages/patches/gd-fix-truecolor-format-correction.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add php.
(dist_patch_DATA): Add gd patches.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-11-20 17:54:14 +01:00
Marius Bakke b28a33512f
gnu: Add sqlite-3.15.1.
* gnu/packages/databases.scm (sqlite-3.15.1): New variable.
2016-11-20 17:46:32 +01:00
Nicolas Goaziou 43ffe220c8
gnu: lilypond: Update to 2.19.51.
* gnu/packages/music.scm (lilypond): Update to 2.19.51.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-20 17:46:21 +01:00
Leo Famulari 25291aca74
gnu: python-icalendar: Update to 3.11.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.
2016-11-20 11:22:27 -05:00
Ben J Woodcroft 66b1bac355
gnu: ruby: Update to 2.3.2.
* gnu/packages/ruby.scm (ruby): Update to 2.3.2.
[replacement]: Remove field.
[origin]: Remove patch.
* gnu/packages/patches/ruby-symlinkfix.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-20 15:50:10 +10:00
Leo Famulari 764c566221
gnu: gnupg: Update to 2.1.16.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.16.
[arguments]: Remove obsolete substitution from 'patch-paths' phase.
Remove 'set-home' phase. Add 'set-gnupg-home' phase.
2016-11-19 23:43:32 -05:00
宋文武 9fff9e6484
gnu: gtk-engines: Don't propagate GTK+.
* gnu/packages/gtk.scm (gtk-engines): Move gtk+ to 'inputs'.
2016-11-20 12:02:04 +08:00
Mark H Weaver 5a1ef07d3e
gnu: linux-libre: Update to 4.8.9.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.9.
2016-11-19 22:29:38 -05:00
Mark H Weaver 13172f0d79
gnu: linux-libre@4.4: Update to 4.4.33.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.33.
2016-11-19 22:28:07 -05:00
Ben Woodcroft 9b62c5a8fb
gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900].
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.2): New variable.
2016-11-20 11:38:12 +10:00
Ludovic Courtès 966a543b36
gnu: Use 'mirror://' URLs in several places.
* gnu/packages/emacs.scm (m17n-lib)[source]: Use 'mirror://'.
* gnu/packages/games.scm (extremetuxracer)[source]: Likewise.
* gnu/packages/gcc.scm (%gcc-infrastructure): Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[source]: Likewise.
* gnu/packages/perl.scm (perl)[source]: Likewise.
* gnu/packages/telephony.scm (exosip)[source]: Likewise.
* gnu/packages/wm.scm (xmonad)[source]: Likewise.
(ghc-xmonad-contrib)[source]: Likewise.
2016-11-19 18:44:54 +01:00
Ricardo Wurmus 18675264c6
gnu: Add samplv1.
* gnu/packages/music.scm (samplv1): New variable.
2016-11-19 17:54:50 +01:00
Ricardo Wurmus cf9af706fb
gnu: Add drumkv1.
* gnu/packages/music.scm (drumkv1): New variable.
2016-11-19 17:54:50 +01:00
Leo Famulari d3d2167728
gnu: libgpg-error: Update to 1.25.
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.25.
2016-11-19 11:54:40 -05:00
Leo Famulari 2fedcd1895
gnu: libtiff: Fix CVE-2016-9448.
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-19 11:31:00 -05:00
Leo Famulari b7e0f65b40
gnu: imagemagick: Update to 6.9.6-5.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-5.
2016-11-19 10:48:51 -05:00
Rene Saavedra 3446ffb57c
gnu: gnome-control-center: Add gdk-pixbuf input.
* gnu/packages/gnome.scm (gnome-control-center)[inputs]: Add gdk-pixbuf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-19 10:38:01 -05:00
ng0 8f49395064
gnu: Add emacs-danneskjold-theme.
* gnu/packages/emacs.scm (emacs-danneskjold-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 21:31:20 +08:00
ng0 5cd4129221
gnu: emacs-cyberpunk-theme: Update to 1.18.
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): Update to 1.18.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 20:19:03 +08:00
Nicolas Goaziou fd057b84ec
gnu: emacs-org: Update to 20161118.
* gnu/packages/emacs.scm (emacs-org): Update to 20161118.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 20:09:50 +08:00
宋文武 ae1e2133b9
gnu: opensmtpd: Correct CA certificates file path.
* gnu/packages/mail.scm (opensmtpd)[arguments]: Pass
'--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt' to #:configure-flags.
2016-11-19 19:19:16 +08:00
Ricardo Wurmus cfcef2c2ac
gnu: gx-switchless-wah-lv2: Update to 0-2.7b0869120.
* gnu/packages/music.scm (gx-switchless-wah-lv2): Update to
0-2.7b0869120.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus 8e6f6503f0
gnu: gx-slow-gear-lv2: Update to 0-2.cb852e042.
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-2.cb852e042.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus a7cd2d44e1
gnu: gx-vintage-fuzz-master-lv2: Update to 0-2.0fec0bc1e.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): Update to
0-2.0fec0bc1e.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus 1df4d85f8b
gnu: gx-super-fuzz-lv2: Update to 0-2.f40389575.
* gnu/packages/music.scm (gx-super-fuzz-lv2): Update to 0-2.f40389575.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus c1802b0834
gnu: gx-voodoo-fuzz-lv2: Update to 0-2.aec7889b4.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): Update to 0-2.aec7889b4.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus dad6cb50da
gnu: gx-hyperion-lv2: Update to 0-2.6a096a664.
* gnu/packages/music.scm (gx-hyperion-lv2): Update to 0-2.6a096a664.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus 31de5e2244
gnu: gx-saturator-lv2: Update to 0-2.0b581ac85.
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-2.0b581ac85.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus 4ed4bb11cb
gnu: qsynth: Update to 0.4.3.
* gnu/packages/audio.scm (qsynth): Update to 0.4.3.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus f2bd238bcd
gnu: synthv1: Update to 0.8.0.
* gnu/packages/music.scm (synthv1): Update to 0.8.0.
2016-11-19 11:26:15 +01:00
Nicolas Goaziou 2c453091e4
gnu: wireshark: Update to 2.2.2.
* gnu/packages/networking.scm (wireshark): Update to 2.2.2.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 16:33:55 +08:00
Nicolas Goaziou ce53f5cbf0
gnu: giac-xcas: Update to 1.2.2-103
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-103.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 16:28:58 +08:00
Muriithi Frederick Muriuki 6689c636d0
gnu: Add ruby-net-http-digest-auth.
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): New variable.
2016-11-19 15:16:19 +10:00
Ben J Woodcroft 4af80275a8
gnu: ruby-2.2: Update to 2.2.6.
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.6.
2016-11-19 07:48:01 +10:00
ng0 175d626478
gnu: mps-youtube: Disable tests.
* gnu/packages/video.scm (mps-youtube): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:16:48 -05:00
ng0 ed3fee5f7b
gnu: python-pafy: Disable tests.
* gnu/packages/python.scm (python-pafy): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:16:48 -05:00
Petter 01278f16a9
gnu: Add xcalib.
* gnu/packages/xdisorg (xcalib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:05:59 -05:00
Ludovic Courtès c2662820f3
gnu: emacs-org: Update to 20161102.
* gnu/packages/emacs.scm (emacs-org)[source]: Switch to elpa.gnu.org so
'guix refresh' can pick it up.  Update to 20161102.
2016-11-18 18:28:03 +01:00
Ludovic Courtès 8134dc1f74
gnu: guile@2.0.13: Fix non-determinism issue in REPL server test.
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
2016-11-18 18:28:02 +01:00
Danny Milosavljevic 651049789f
gnu: xonsh: Update to 0.4.7.
* gnu/packages/shells.scm (xonsh): Update to 0.4.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-18 17:02:30 +01:00
宋文武 d7da76044b
gnu: opensmtpd: Build man pages.
* gnu/packages/mail.scm (opensmtpd)[native-inputs]: Add groff.
2016-11-18 22:19:49 +08:00
Efraim Flashner 4d17fe2ad3
gnu: python-gst: Update to 1.10.1.
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.10.1.
2016-11-18 14:26:40 +02:00
Efraim Flashner 950548b0f7
gnu: gst-libav: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.1.
2016-11-18 14:26:40 +02:00
Efraim Flashner 2e747a3ff6
gnu: gst-plugins-ugly: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.1.
2016-11-18 14:26:39 +02:00
Efraim Flashner 95e89a4510
gnu: gst-plugins-bad: Update to 1.10.1 (Fixes security issues).
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.1.
2016-11-18 14:26:39 +02:00
Efraim Flashner faa3c13920
gnu: gst-plugins-good: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.1.
2016-11-18 10:01:29 +02:00
Efraim Flashner de0e591a53
gnu: gst-plugins-base: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.1.
2016-11-18 10:01:29 +02:00
Efraim Flashner 28e3663134
gnu: gstreamer: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.1.
2016-11-18 10:01:17 +02:00
Leo Famulari 175c910380
gnu: mpop: Use 'sourceforge' mirror.
This is a followup to commit 5837e69936.

* gnu/packages/mail.scm (mpop)[source]: Use 'sourceforge' mirror.
2016-11-17 15:56:06 -05:00
Arun Isaac 5837e69936
gnu: mpop: Update to 1.2.6.
* gnu/packages/mail.scm (mpop): Update to 1.2.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-17 17:45:38 +01:00
Efraim Flashner e5294500d6
gnu: obs: Update to 0.16.5.
* gnu/packages/video.scm (obs): Update to 0.16.5.
2016-11-17 07:26:20 +02:00
Efraim Flashner ca569eb89f
gnu: aria2: Update to 1.29.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.29.0.
2016-11-17 07:26:20 +02:00
Mark H Weaver 2f63e087fe
Revert "gnu: icecat: Enable gtk3 support."
This reverts commit eaf72e218e.

IceCat misbehaves with gtk+3, most notably the scroll bar handles are
invisible.  Here we revert back to gtk+2 until these problems can be
addressed.
2016-11-16 22:34:11 -05:00
Eric Bavier fe047e1380
gnu: Add Handbrake.
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-16 20:58:12 -06:00
Leo Famulari 1339a8ed1c
gnu: libtiff: Fix some buffer overflows.
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-16 19:59:28 -05:00
Leo Famulari 7cea56e2ac
gnu: libtiff: Fix CVE-2016-9297.
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-16 19:59:24 -05:00
Efraim Flashner d87c201f96
gnu: jasper: Update to 1.900.29.
* gnu/packages/image.scm (jasper): Update to 1.900.29.
[inputs]: Add libjpeg.
2016-11-16 22:06:33 +02:00
Mark H Weaver 9cdb405b81
gnu: icecat: Remove unneeded patch.
This is a followup to commit 1a87aa7567.

* gnu/packages/gnuzilla.scm (icecat)[sources][patches]: Remove patch for
CVE-2016-5296, which is for a bundled copy of pixman that is
subsequently deleted by a snippet.
2016-11-16 14:14:25 -05:00
John Darrington d9804e5011
gnu: util-linux: Add current system profile to fs search path.
* gnu/packages/linux.scm (util-linux)[arguments]: Add
"--enable-fs-paths-default=/run/current-system/profile/sbin"
to configure-flags.
2016-11-16 20:13:41 +01:00
Marius Bakke d3e5dc0a44
gnu: perl-dbd-mysql: Update to 4.039 [Fixes CVE-2016-1249].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.039.
[source]: Update CPAN URI.
2016-11-16 18:33:57 +00:00
Leo Famulari 1d87fdf531
gnu: ncmpcpp: Update to 0.7.7.
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.7.
2016-11-16 13:09:36 -05:00
Leo Famulari 0ffa8b8e7b
gnu: shotwell: Update to 0.25.0.1.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.1.
2016-11-16 13:09:36 -05:00
Mark H Weaver 1a87aa7567
gnu: icecat: Add fixes from Firefox ESR 45.5.0.
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.

* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0.  Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-16 13:04:02 -05:00
Mark H Weaver 56ac2bf442
gnu: pixman: Add fix for CVE-2016-5296.
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
2016-11-16 13:03:56 -05:00
宋文武 eb4b3e4bef
gnu: opensmtpd: Update to 6.0.2p1.
* gnu/packages/mail.scm (opensmtpd): Update to 6.0.2p1.
[arguments]: Pass '--with-path-sock=/var/run' to #:configure-flags.
2016-11-16 21:00:40 +08:00
Mark H Weaver d55019136e
gnu: linux-libre: Update to 4.8.8.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.8.
2016-11-16 00:08:19 -05:00
Mark H Weaver 7d154949c9
gnu: linux-libre@4.4: Update to 4.4.32.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.32.
2016-11-16 00:06:46 -05:00
Hartmut Goebel d46491779e
gnu: python-awscli: fix inputs.
* gnu/packages/python.scm (python-awscli): [inputs] change to
  [native-inputs].
2016-11-15 22:36:22 +01:00
Hartmut Goebel 8fa6890b6c
gnu: python-botocore: fix inputs.
* gnu/packages/python.scm (python-botocore): [inputs] change to
  [native-inputs].
2016-11-15 22:36:21 +01:00
Hartmut Goebel 05e2e4cf00
gnu: python-pip: fix inputs.
* gnu/packages/python.scm (python-pip): [inputs] change to
  [native-inputs].
2016-11-15 22:36:21 +01:00
Hartmut Goebel e62600feb6
gnu: python2-ipython: fix inputs.
* gnu/packages/python.scm (python2-ipython): [inputs] change to
  [native-inputs].
2016-11-15 22:36:20 +01:00
Hartmut Goebel 5b1416d983
gnu: python-betamax: fix inputs.
* gnu/packages/python.scm (python-betamax): [inputs] change to
  [propagated-inputs].
2016-11-15 22:36:19 +01:00
Hartmut Goebel 1b5241c515
gnu: python-scikit-learn: Remove useless property "python2-variant".
The Python 2 packages does not change the definition, thus the
propery is useless.

* gnu/packages/python.scm (python-scikit-learn): [properties]:
  Remove  "python2-variant". (python2-scikit-learn): Remove
  now needless "strip-python2-variant".
2016-11-15 22:36:18 +01:00
Hartmut Goebel bac23672ee
gnu: python-tables: Remove python byte-code files from source.
* gnu/packages/python.scm (python-tables)[source]: Add snippet.
2016-11-15 22:36:18 +01:00
Hartmut Goebel b9c8ccce04
gnu: python-flake8-2.2.4: Remove python byte-code files from source.
* gnu/packages/python.scm (python-flake8-2.2.4)[source]: Add snippet.
2016-11-15 22:36:17 +01:00
Hartmut Goebel 011271c769
gnu: python-flake8: Remove python byte-code files from source.
* gnu/packages/python.scm (python-flake8)[source]: Add snippet.
2016-11-15 22:36:09 +01:00
Hartmut Goebel bac6816879
gnu: python-pytest-django: Remove needless propagated input "python-py".
This is already propagated by python-pytest.

* gnu/packages/python.scm (python-pytest-django) [propagated-inputs]:
  Remove python-py.
2016-11-15 22:32:02 +01:00
Hartmut Goebel de5bc89093
gnu: python2-pbcore: Fix inputs:
* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
  [propagated-inputs]. [native-inputs]: Remove python-docutils, which
  comes with sphinx. [former propagated-inputs]: move all (which is only
  pyxb) to [inputs].
2016-11-15 22:32:01 +01:00
Hartmut Goebel 54c85e12fd
gnu: python2-warpedlmm: Remove phase remove-bin-directory.
This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)

* gnu/packages/bioinformatics.scm (python2-warpedlmm)
  [modify-phases] Remove, since remove-bin-directory was the only
  modification here.
2016-11-15 22:32:00 +01:00
Hartmut Goebel 3221207417
gnu: khal: Fix build.
The old one was plain wrong and only worked by luck since the old
python build system did manipulate PYTHONPATH.

* gnu/packages/calendar.scm(khal)[phase manpage]: Use
  add-installed-pythonpath.
2016-11-15 22:31:59 +01:00
Hartmut Goebel 632735f215
gnu: python-testlib: Remove useless self-defined phase "unpack".
Unzipping is now done by standard-phase "unpack" automatically.

* gnu/packages/python.scm (python-testlib, python2-testlib)[phases] No longer
  replace "unpack".
2016-11-15 22:31:59 +01:00
Hartmut Goebel 251ed7f2fe
gnu: python-sphinxcontrib-newsfeed: Remove needless input.
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed) [propagated-inputs]:
  Remove python-docutils, already porpagated by python-sphinx.
2016-11-15 22:31:58 +01:00
Hartmut Goebel 38ceb106bd
gnu: python-nautilus: Correct inputs
* gnu/packages/python.scm(python-nautilus, python2-nautilus):
  [propagated-inputs] remove python-graphql-core, python-graphql-relay,
  python-requests: not listed and already propagated by others. Remove
  pycparser: not listed, not used in source. Move python-nose2 to
  [native-inputs] (used for tests only).
2016-11-15 22:31:57 +01:00
Hartmut Goebel 4e0969686c
gnu: python-freezegun: Correct input.
* u/packages/python.scm(python-freezegun)[native-inputs] move
  python-dateutils-2 to [propagated-inputs].
2016-11-15 22:31:56 +01:00
Hartmut Goebel fd1d6de729
gnu: python-consul: Correct inputs.
* gnu/packages/python.scm(python-consul)[native-inuts] move python-requests
  and python-six to [propagated-inputs].
2016-11-15 22:31:55 +01:00
Hartmut Goebel 2c199b5527
gnu: python-prompt-toolkit: Correct inputs
* gnu/packages/python.scm(python-prompt-toolkit)[native-inputs] move
  python-six to [propagated-inputs]. Remove now empty [native-inputs].
2016-11-15 22:31:55 +01:00
Hartmut Goebel d8ea5f2f27
gnu: python-responses: Correct inputs
* gnu/packages/python.scm(python-responses)[native-inputs] move python-cookies
  to [propagated-inputs]
2016-11-15 22:31:54 +01:00
Hartmut Goebel a0a0985978
gnu: python-sphinxcontrib-programoutput: Remove needless input.
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinxcontrib-programoutput)
  [propagated-inputs]: Remove python-docutils.
2016-11-15 22:31:53 +01:00
Hartmut Goebel 47c7dc4a3f
gnu: python-sphinx-repoze-autointerface: Remove needless input.
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinx-repoze-autointerface)
  [propagated-inputs]: Remove python-docutils.
2016-11-15 22:31:52 +01:00
Hartmut Goebel 06f1d73ed4
gnu: python-celery: Remove needless inputs.
These are indirect requirements and propagated by python-kombu.

* gnu/packages/python.scm(python-celery)[propagated-inputs] Remove python-amqp
  and python-anyjson.
2016-11-15 22:31:51 +01:00
Hartmut Goebel f7989b8bb0
gnu: Remove some outdated comments.
These comments were about setuptools used at runtime for pkg_resources.

* gnu/packages/python.scm: Remove some outdated comments.
2016-11-15 22:31:50 +01:00
Hartmut Goebel 7ba07edfb1
gnu: python-tox: Update FIXME comments.
* gnu/packages/python.scm(python-tox)[arguments]: Update FIXME
  comment. [inputs]: Add FIXME comment.
2016-11-15 22:31:49 +01:00
Hartmut Goebel 8322749a1c
gnu: python-urllib3: update comment.
* gnu/packages/python.scm(python-urllib3)[propagated-inputs]: Update comment.
2016-11-15 22:31:49 +01:00
Hartmut Goebel b9fc496ff6
gnu: python-wsgi-intercept: Correct inputs.
* gnu/packages/python.scm(python-wsgi-intercept): [native-inputs]: move
  python-six to [propagated-inputs].  [propagated-inputs] move
  python-httplib2, python-requests to [native-inputs].
2016-11-15 22:31:48 +01:00
Hartmut Goebel a5333f7c61
gnu: python-websocket-client: Correct inputs.
* gnu/packages/python.scm (python-websocket-client)[native-inputs] change to
  [propagated-inputs], remove a wrong comment.
2016-11-15 22:31:47 +01:00
Hartmut Goebel fd8e23b7b3
gnu: python-zope-security: Correct inputs.
* gnu/packages/python.scm(python-zope-security)[native-inputs] New element,
  move python-zope-component, python-zope-configuration, python-zope-location,
  python-zope-testrunner, python-zope-testing here.
2016-11-15 22:31:46 +01:00
Hartmut Goebel 861f70c9da
gnu: python-configobj: Correct inputs.
* gnu/packages/python.scm(python-configobj)[native-inputs] change to
  [propagated-inputs].
2016-11-15 22:31:46 +01:00
Hartmut Goebel d27f176a72
gnu: python-zope-location: Correct inputs.
* gnu/packages/python.scm(python-zope-location)[native-inputs] change to
  [propagated-inputs].
2016-11-15 22:31:45 +01:00
Hartmut Goebel 38d480a8a6
gnu: python-zope-interface: Correct inputs.
* gnu/packages/python.scm(python-zope-interface)[propagated-inputs] change to
  [native-inputs].
2016-11-15 22:31:44 +01:00
Hartmut Goebel 2887700e4d
gnu: python-pathpy: Build documentation.
* gnu/packages/python.scm (python-pathpy, python2-pathpy)
  [output] Add output "doc".
  [native-inputs]: Add python-sphinx and python-rst.linker
  [build-doc], [install-doc]: New build phases.
2016-11-15 22:31:43 +01:00
Hartmut Goebel fe94cf0cdd
gnu: Add python-rst.linker, python2-rst.linker.
* gnu/packages/python.scm (python-rst.linker, python2-rst.linker): New
  variables.
2016-11-15 22:31:43 +01:00
Hartmut Goebel 213d1745c6
gnu: python-numpydoc: Correct inputs.
* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
  [native-inputs]: Remove python-docutils. Move python-shpinx to
  [propagated-inputs].
2016-11-15 22:31:42 +01:00
Hartmut Goebel cf8124b017
gnu: python-redis: Remove unused input.
* gnu/packages/python.scm (python-redis, python2-redis) Comment out
  [native-inputs] since these are used only for running tests, which
  is disabled since it requires a Redis server.
2016-11-15 22:31:41 +01:00
Hartmut Goebel 1273359455
gnu: python2-scikit-image: Remove needless native-input and inheritance.
Remove last additional [native-inputs] python-mock, thus there is no
need to inherit python-scikit-image package. Simply use
package-with-python2.

* gnu/packages/python.scm: (python-scikit-image): [properties]: Remove
  python2-variant. (python2-scikit-image) Use simply
  "package-with-python2" after removing last [native-inputs] python-mock.
2016-11-15 22:31:40 +01:00
Hartmut Goebel ddd1dc3d2d
gnu: python2-scikit-image: Remove needless propagated-input.
* gnu/packages/python.scm: (python2-scikit-image)
  [propagated-inputs]: Remove python-pytz, it does not occur anywhere in
  the source.
2016-11-15 22:31:39 +01:00
Hartmut Goebel b83e23337b
gnu: python-scikit-image: Correct inputs.
* gnu/packages/python.scm: (python-scikit-image, python2-scikit-image)
  [propagated-inputs]: Move python-numpy and python-six to [native-inputs].
  Add comment.
2016-11-15 22:31:39 +01:00
Hartmut Goebel 9fbe7b2bca
gnu: python-blinker: No longer disable tests.
The package does not provide tests, but there is no need to disable them.
Having them enabled allows running them if some newer version may provide
tests.

* gnu/package/python.scm (python-blinker, python2-blinker):
  [arguments]: Remove.
2016-11-15 22:31:38 +01:00
Hartmut Goebel 7c88bcf4bb
gnu: python-feedgenerator: Remove python byte-code files from source.
* gnu/packages/python.scm (python-feedgenerator, python2-feedgenerator)
  [source]: Add snippet.
2016-11-15 22:31:37 +01:00
Hartmut Goebel f052ec9a50
gnu: python-joblib: Add comment.
* gnu/packages/python.scm (python-joblib): Add comment.
2016-11-15 22:31:36 +01:00
Hartmut Goebel 6aa5f1ca24
gnu: python-joblib: Remove python byte-code files from source.
* gnu/packages/python.scm (python-joblib, python2-joblib)[source]:
  Add snippet.
2016-11-15 22:31:36 +01:00
Hartmut Goebel bb06aa3446
gnu: python-oauthlib, python-oauthlib2: Correct inputs.
* gnu/packages/python.scm (python-oauthlib) [propagated-inputs] Move all to
  [native-inputs]. [native-inputs]: Remove python-mock, python-coverage.
  (python2-oauthlib)[native-inputs]: Add python2-mock.
2016-11-15 22:31:35 +01:00
Hartmut Goebel 130fe99410
gnu: python-pyjwt: Add missing inputs and enable test-suite.
* gnu/packages/python.scm (python-pyjwt) [native-inputs]: Add
  python-pytest and python-pytest-cov. [arguments]. Remove.
2016-11-15 22:31:34 +01:00
Hartmut Goebel f78e1c27ef
gnu: python-cov-core: Fix imports.
* gnu/packages/python.scm (python-cov-core) [inputs]: change
  to [propagated-inputs].
2016-11-15 22:31:33 +01:00
Hartmut Goebel 25b2c47d75
gnu: python-statsmodels: Fix build
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
2016-11-15 22:31:33 +01:00
Hartmut Goebel d5e41cf28c
gnu: pytest-mock: remove needless propagated input "python-py".
This is not listed as an requirement and is already propagated by
python-pytest.

* gnu/packages/python.scm (python-pytest-mock, python2-pytest-mock):
  [propagated-inputs]: Remove python-py.
2016-11-15 22:31:32 +01:00
Hartmut Goebel 8e73d3baab
gnu: python-testscenarios: remove needless input "mimetools".
This does not occur in the source.

* gnu/packages/python.scm (python-testscenarios, python2-testscenarios)
  [propagated-inputs]: Remove python-mimeparse.
2016-11-15 22:31:31 +01:00
Hartmut Goebel e0ed457944
gnu: python-setuptools: remove pre-built binaries from source.
These are used to build self-extracting installers for Windows.

* gnu/packages/python.scm (python-setuptools, python2-setuptools) [source]:
  Add snippet to delete *.exe files.
2016-11-15 22:31:30 +01:00
Hartmut Goebel c4516ad206
gnu: python-pytest-xdist: Remove needless input python-apipkg.
* gnu/packages/python.scm (python-pytest-xdist): Remove input
  python-apipkg.
2016-11-15 22:31:29 +01:00
Hartmut Goebel b52ad3714a
gnu: python-subunit, python-testrepository: Fix inputs
* gnu/packages/python.scm (python-subunit, python2-subunit):
  [propagated-inputs]:: Add python-extras, remove python-testtools, move
  python-testscenarios to [native-inputs].  (python-testrepository,
  python2-testrepository): [native-inputs] move python-fixtures and
  python-subunit to [propagated-inputs]
2016-11-15 22:31:29 +01:00
Hartmut Goebel 521b77729e
gnu: python-scripttest: Correct inputs.
python-pytest is only required for testing, not at run-time.

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [propagated-inputs] Move python-pytest to [native-inputs].
2016-11-15 22:31:28 +01:00
Hartmut Goebel abcc7a0eb9
gnu: python-pandas: Fix build.
* gnu/packages/python.scm (python-pandas): Add python-cython to
  native-inputs.
2016-11-15 22:31:27 +01:00
Hartmut Goebel e116d100fd
gnu: openstack: Correct inputs.
* gnu/packages/openstack.scm (python-os-testr) Propagate input
  python-subunit, change all other inputs to native-inputs.
  (python-mox3): Remove needless input python-six.
  (python-stevedore, python-requests-mock): Move python-pbr to
  native-inputs.
2016-11-15 22:31:27 +01:00
Hartmut Goebel 48160559a1
gnu: thefuck: Fix build.
Requires setuptools >= 17.1 due to some features used, while our
python currently only includes 12.0.

* gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
2016-11-15 22:31:26 +01:00
Hartmut Goebel a08a835034
gnu: vdirsyncer: Fix build by setting correct PYTHONPATH.
For thus, use add-installed-pythonpath.

* gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using
  add-installed-pythonpath.
2016-11-15 22:31:25 +01:00
Hartmut Goebel eee5cd0440
gnu: python-ipython: Fix build.
* gnu/packages/python.scm (python-ipython, python2-ipython) [check,
  install-doc] set PYTHONPATH prior to running tests.
2016-11-15 22:31:24 +01:00
Hartmut Goebel d548e6aa06
gnu: python-scipy: Fix build.
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath.  Add
  dummy newlines character to string to make emacs happy.
2016-11-15 22:31:23 +01:00
Hartmut Goebel ca33a3ad97
gnu: python-matplotlib: Fix build.
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
  inputs. [install-doc] set PYTHONPATH prior to building docs.
2016-11-15 22:31:23 +01:00
Hartmut Goebel 2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build.
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
  modify-phases, add dummy newlines character to string to make emacs happy,
  set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
  PYTHONPATH prior to building docs.
2016-11-15 22:31:22 +01:00
Hartmut Goebel 9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges.
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
2016-11-15 22:31:21 +01:00
Hartmut Goebel b72ac1b54b
gnu: python2-pysnptools: Correct inputs.
dateutil, pytz, and six do not occur in the code.

Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
2016-11-15 22:31:21 +01:00
Hartmut Goebel e408ffc302
gnu: python-zope-testing: Remove needless input.
* gnu/packages.python.scm (python-zope-testing): Remove
  python-zope-interface from native-imports.
2016-11-15 22:31:20 +01:00
Hartmut Goebel 47f77210fc
gnu: python-zope-schema: Add missing inputs.
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
  python-nose to native-inputs.
2016-11-15 22:31:19 +01:00
Hartmut Goebel 05c2fd3685
gnu: python-pytest-flakes: Fix build.
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
2016-11-15 22:31:18 +01:00
Hartmut Goebel 6151120a71
gnu: python-pillow: Fix build.
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
  installed site-package to PYTHONPATH.
2016-11-15 22:31:17 +01:00
Hartmut Goebel 5e1c9d242a
gnu: python-singledispatch: correct inputs.
python-six is only required for conversion, not at run-time

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [inputs] Move python-six to [native-inputs].
2016-11-15 22:31:17 +01:00
Hartmut Goebel d2a8db92fe
gnu: python-pbr: Rework bootstrapping.
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping.  Now we use the same version just without tests and without
test dependencies.

* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
  replace by … (python-pbr-minimal, python2-pbr-minimal).
  (python-pbr) inherit from python-pbr-minimal, adding the requirements for
  testing and building the documentation.
  (python-fixtures) [native-inputs] Use python-pbr-minimal here.
  (python-testrepository): [native-inputs] Add it here, it was a missing
  dependency.
2016-11-15 22:31:16 +01:00
Hartmut Goebel b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs.
python-fixtures is required only for building.

* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
  python-fixtures to [native-inputs].
2016-11-15 22:31:15 +01:00
Hartmut Goebel 424f0a4175
gnu: python-fixture: Enable tests.
* gnu/packages/python.scm (python-fixtures) [arguments] remove
  keyword `#:tests?`.
2016-11-15 22:31:14 +01:00
Hartmut Goebel ae92caddc5
gnu: python-fixture: Correct inputs.
python-pbr is required only for building.

* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
  python-pbr-0.11 to [native-inputs].
2016-11-15 22:31:13 +01:00
Hartmut Goebel 6986669012
gnu: python-hdf5: Correct inputs.
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.

* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
  [propagated-inputs].
2016-11-15 22:31:12 +01:00
Hartmut Goebel 9820a02858
gnu: python-h5py: Remove needless "python2-variant" property.
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
  property. (python2-h5py): Don't strip property "strip-python2-variant".
2016-11-15 22:31:12 +01:00
Hartmut Goebel d9a6e221e2
gnu: python-ccm: Update synopsis and description.
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
2016-11-15 22:31:11 +01:00
Hartmut Goebel e165f137d8
gnu: python-ccm: Add missing input python-psutil.
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
  python-psutil.
2016-11-15 22:31:10 +01:00
Hartmut Goebel ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs.
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.

* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
2016-11-15 22:31:09 +01:00
Hartmut Goebel ce40b38395
gnu: python-pytest-cov: Use upstream options for testing.
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
  by one passing the options found in upstream's tox.ini-file
  to "python setup.py check".
2016-11-15 22:31:08 +01:00
Hartmut Goebel b3e8b4bd0f
gnu: scons: Do not use setuptools for building.
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
2016-11-15 22:31:07 +01:00
Hartmut Goebel f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
  [native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
2016-11-15 22:31:07 +01:00
Hartmut Goebel 328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs.
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.

* gnu/packages/python.scm
  (python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
  python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
  change to [native-inputs].
  (python-flake8, tox) Likewise, add a comment.
  (python-scikit-learn, python-numpy)[native-inputs] New element, move
  python-nose here.
  (python2-kombu)[inputs] change to [native-inputs], use python-kombu's
  package-native-inputs.
2016-11-15 22:31:06 +01:00
Hartmut Goebel 482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs
* gnu/packages/openstack.scm
  (python-os-client-config)[inputs] change to
  [native-inputs]. [propagated-inputs]: New element, move python-appdirs,
  python-pyyaml here.
  (python-git-review)[propagated-inputs]: New element, move python-requests
  here.
* gnu/packages/python.scm
  (python-rpy2)[propagated-inputs]: New element, move python-six here.
  (python-xcffib)[inputs] move python-six to [propagated-inputs].
  (python-flake8)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-pytest)[propagated-inputs]: New element, move python-py here.
  (python-tox)[propagated-inputs]: New element, move all inputs except of
  python-pytest here.
  (python-botocore)[propagated-inputs]: New element, move python-dateutil,
  python-docutils, python-jmespath here.
  (awscli)[propagated-inputs]: New element, move python-colorama,
  python-botocore, python-s3transfer, python-docutils, python-rsa here.
  (python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
  python-lxml here.
2016-11-15 22:31:05 +01:00
Hartmut Goebel dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs.
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].

* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
  changed to [propagated-inputs].
2016-11-15 22:31:04 +01:00
Hartmut Goebel e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs.
This patch contains the changes where all [inputs] are changed to
[native-inputs].

* gnu/packages/python.scm (python-pytest, python-fixtures,
  python-testrepository, python-virtualenv): All [inputs] are changed to
  [native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
  python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
  python-oslo.i18n, python-oslo.log, python-oslo.serialization,
  python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
2016-11-15 22:31:03 +01:00
Hartmut Goebel f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs.
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]

* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
  python-babel, python-keyring python-pandas, python-tzlocal,
  python-parse-type, python-nose2, python-pytest, python-pytest-mock,
  python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
  python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
  python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
  pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
  python-tornado, python2-tornado, python-debian, python-execnet,
  python-pytest-cache, pytest-localserver, python-clint, python-rply,
  python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
  python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
  python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
  python-schematics, python-url, python2-url, python-freezegun,
  python-glances, python-graphql-core, python-graphql-relay, python-graphene,
  python-nautilus, python-s3transfer): All [inputs] become
  [propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.

SQACH all become propagated
2016-11-15 22:31:03 +01:00
Hartmut Goebel b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
Hartmut Goebel d8013ee221
gnu: Remove needless inputs python-pip and python2-pip.
This is installed together with Python 3 anyway and for our build
of Python 2.

* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
  "python2-pip". (python-reportlab)[properties]: remove "python2-variant".
2016-11-15 22:31:01 +01:00
Hartmut Goebel f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b)
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).

* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
  from a Python 3 package if adding python-setuptools respective
  python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
  been the sole reason for inheriting. Remove now needless [properties]
  "python2-variant" where applicable.
  (python2-lockfile, python2-keyring, python2-dateutil-2,
  python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
  python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
  python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
  python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
  python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
  python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
  python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
  python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
  python2-flask, python2-cookies, python2-responses, python2-future,
  python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
  python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
  python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
  python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
  python2-pytest-pep8, python2-pytest-flakes, python2-glances,
  python2-betamax, python2-file, python2-flask-babel, python2-furl,
  python2-imagesize python2-orderedmultidict, python2-pycodestyle,
  python2-vcversioner, python2-graphql-core, python2-graphql-relay,
  python2-validictory): Remove neesless input "python2-setuptools", don't
  inherit, don't call strip-python2-variant.
  (python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
  python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
  python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
  python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
  python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
  python-execnet, python-pytest-cache, python-wtforms, python-mako,
  python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
  python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
  python-psycopg2, python-vobject, python-flask, python-cookies,
  python-responses, python-future, python-ply, python-wcwidth,
  python-prompt-toolkit, python-jedi, python-requests-oauthlib,
  python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
  python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
  python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
  python-file, python-flask-babel, python-furl, python-imagesize,
  python-orderedmultidict, python-pycodestyle, python-vcversioner,
  python-graphql-core, python-graphql-relay, python-validictory): Remove
  "python2-variant" property.
2016-11-15 22:29:00 +01:00
Hartmut Goebel 5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
Hartmut Goebel 00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
Hartmut Goebel f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.

* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
  [propagated-inputs] where python-setuptools or python2-setuptools are the
  sole entries. Remove python-setuptools and python2-setuptools listed on a
  line by its own from [inputs], [native-inputs] and [propagated-inputs].

* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
  python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
  crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
  pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
  python-os-testr, python2-os-testr,
  python-stevedore, python2-stevedore,
  python-tempest-lib, python2-tempest-lib,
  python-oslo.log, python2-oslo.log,
  python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
  python-babel, python2-babel,
  python-parse-type,
  python-pytest, python2-pytest,
  python-scripttest, python2-scripttest,
  python-testtools, python2-testtools,
  python-testscenarios, python2-testscenarios,
  python-subunit, python2-subunit,
  python-pbr-0.11,
  python-pbr, python2-pbr,
  python-testrepository, python2-testrepository,
  behave,
  python-wheel, python2-wheel,
  python-requests, python2-requests,
  python-jsonschema, python2-jsonschema,
  python-pyjwt, python2-pyjwt,
  python-virtualenv, python2-virtualenv,
  python-jinja2, python2-jinja2,
  python-joblib, python2-joblib,
  python-sphinx, python2-sphinx,
  python-feedgenerator, python2-feedgenerator,
  python-scikit-image, python2-scikit-image,
  python-redis, python2-redis,
  python2-fastlmm,
  python-numpydoc, python2-numpydoc,
  python-matplotlib, python2-matplotlib,
  python2-pysnptools,
  python-rpy2, python2-rpy2,
  python-pillow, python2-pillow,
  python-pycparser, python2-pycparser,
  python-cffi, python2-cffi,
  python-cairocffi, python2-cairocffi,
  python-drmaa, python2-drmaa,
  python-pathpy, python2-pathpy,
  python-simplegeneric, python2-simplegeneric,
  python-ipython, python2-ipython,
  python-apsw, python2-apsw,
  python-lxml, python2-lxml,
  python-networkx, python2-networkx,
  python-pyzmq, python2-pyzmq,
  python-mccabe, python2-mccabe,
  python-mccabe-0.2.1,
  python-flake8, python2-flake8,
  python-flake8-2.2.4,
  python-mistune, python2-mistune,
  python-ptyprocess, python2-ptyprocess,
  python-llfuse, python2-llfuse,
  python-webob, python2-webob,
  python-xlrd, python2-xlrd,
  python-tables, python2-tables,
  python-pip, python2-pip,
  python-libarchive-c, python2-libarchive-c,
  python-docopt, python2-docopt,
  python-pyrfc3339, python2-pyrfc3339,
  python-configobj, python2-configobj,
  python-clint, python2-clint,
  python-rply, python2-rply,
  python2-rpython,
  python-widgetsnbextension, python2-widgetsnbextension
  jupyter,
  python-jupyter-console, python2-jupyter-console,
  python-hy, python2-hy,
  python-urllib3, python2-urllib3,
  python-rsa, python2-rsa,
  python-tox, python2-tox,
  python2-hypothesis,
  python-paste, python2-paste,
  python-pastescript, python2-pastescript,
  python2-unicodecsv,
  python-pkgconfig, python2-pkgconfig,
  python2-rope,
  python-sqlparse, python2-sqlparse,
  python-gevent, python2-gevent,
  python-tabulate, python2-tabulate,
  python-arrow, python2-arrow,
  python-cleo, python2-cleo,
  python-fake-factory, python2-fake-factory,
  ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15 22:27:31 +01:00
Ricardo Wurmus 86f4e9d76a
gnu: fftw: Build threads library.
* gnu/packages/algebra.scm (fftw)[arguments]: Add "--enable-threads" to
configure flags.
2016-11-15 22:09:25 +01:00
Hartmut Goebel 5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.

* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
  [native-inputs] and [propagated-inputs] where python-setuptools or
  python2-setuptools are the sole entries. Remove python-setuptools and
  python2-setuptools listed on a line by its own from [inputs],
  [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
  multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
  python-django-simple-math-captcha, python2-django-simple-math-captcha):
  Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
  python-debtcollector, python2-debtcollector,
  python-mox3, python2-mox3,
  python-os-client-config, python2-os-client-config,
  python-oslo.config, python2-oslo.config,
  python-oslo.context, python2-oslo.context,
  python-oslo.i18n, python2-oslo.i18n,
  python-oslo.serialization, python2-oslo.serialization,
  python-oslosphinx, python2-oslosphinx,
  python-oslotest, python2-oslotest,
  python-oslo.utils, python2-oslo.utils,
  python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-15 21:58:44 +01:00
Hartmut Goebel f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a)
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.

* gnu/packages/python.scm (python-psutil, python2-psutil,
  python-py-bcrypt, python2-py-bcrypt,
  python-paramiko, python2-paramiko,
  python-httplib2, python2-httplib2,
  python-ecdsa, python2-ecdsa,
  python-ccm, python2-ccm,
  python2-backport-ssl-match-hostname,
  python-pycrypto, python2-pycrypto,
  python-six, python2-six,
  python-dateutil, python2-dateutil,
  python2-mechanize,
  python-extras, python2-extras,
  python-mimeparse, python2-mimeparse,
  python-nose, python2-nose,
  python-nose2, python2-nose2,
  python-unittest2, python2-unittest2,
  python-py, python2-py,
  python-testresources, python2-testresources,
  python-fixtures-0.3.16,
  python-fixtures, python2-fixtures,
  python-coverage, python2-coverage,
  python-discover, python2-discover,
  python-exif-read, python2-exif-read,
  python-pyld, python2-pyld,
  python-certifi, python2-certifi,
  python-click, python2-click,
  python-vcversioner, python2-vcversioner,
  python-unidecode, python2-unidecode,
  python-pyyaml, python2-pyyaml,
  python-markupsafe, python2-markupsafe,
  python-pystache, python2-pystache,
  python-docutils, python2-docutils,
  python-pygments, python2-pygments,
  python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
  python-blinker, python2-blinker,
  python-rq, python2-rq,
  python-numpy, python2-numpy,
  python-distutils-extra, python2-distutils-extra,
  python2-elib.intl,
  python-pillow, python2-pillow,
  python-xcffib, python2-xcffib,
  python-decorator, python2-decorator,
  python-gridmap, python2-gridmap,
  python-pickleshare, python2-pickleshare,
  python-isodate, python2-isodate,
  python-html5lib, python2-html5lib,
  python2-cssutils,
  python-cssselect, python2-cssselect,
  python-netifaces, python2-netifaces,
  python-sympy, python2-sympy,
  python-testlib, python2-testlib,
  python2-xlib,
  python-singledispatch, python2-singledispatch,
  python-backports-abc, python2-backports-abc,
  python-pep8, python2-pep8,
  python-pyflakes, python2-pyflakes,
  python-fonttools, python2-fonttools,
  python-ly,
  python-appdirs, python2-appdirs,
  python-netaddr, python2-netaddr,
  python-wrapt, python2-wrapt,
  python-iso8601, python2-iso8601,
  python-monotonic, python2-monotonic,
  python-prettytable, python2-prettytable,
  python-pyasn1-modules, python2-pyasn1-modules,
  python-idna, python2-idna,
  python-pretend, python2-pretend,
  python-cryptography-vectors, python2-cryptography-vectors,
  python-cryptography, python2-cryptography,
  python-pyopenssl, python2-pyopenssl,
  python-debian, python2-debian,
  python-chardet, python2-chardet,
  python-zope-event, python2-zope-event,
  python-zope-i18nmessageid, python2-zope-i18nmessageid,
  python-websocket-client, python2-websocket-client,
  python-args, python2-args,
  python-astor, python2-astor,
  python2-functools32,
  python2-futures,
  python2-promise,
  python-colorama, python2-colorama,
  python-pluggy, python2-pluggy,
  python-jmespath, python2-jmespath,
  python-botocore, python2-botocore,
  awscli,
  python-pytest-subtesthack, python2-pytest-subtesthack,
  python-pastedeploy, python2-pastedeploy,
  python-magic, python2-magic,
  python2-s3cmd,
  python2-bz2file,
  python-cysignals, python2-cysignals,
  python-py3status,
  python-tblib, python2-tblib,
  python-greenlet, python2-greenlet,
  python-twisted, python2-twisted,
  python-kazoo, python2-kazoo,
  python-pykafka, python2-pykafka,
  python2-jsonrpclib,
  python-chai, python2-chai,
  python-inflection, python2-inflection,
  python-pylev, python2-pylev,
  python-lazy-object-proxy, python2-lazy-object-proxy,
  python-dnspython, python2-dnspython,
  python-email-validator, python2-email-validator,
  python-ukpostcodeparser, python2-ukpostcodeparser,
  python-pyaml, python2-pyaml,
  python-flexmock, python2-flexmock,
  python-orator, python2-orator,
  python-bleach, python2-bleach,
  python-ipywidgets, python2-ipywidgets,
  python-nbconvert, python2-nbconvert,
  python-nbformat, python2-nbformat,
  python-axolotl-curve25519, python-axolotl2-curve25519,
  python-axolotl, python2-axolotl,
  python-nautilus, python-s3transfer): Remove python-setuptools and
  python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
  Remove [inputs], [native-inputs] and [propagated-inputs] where
  python-setuptools or python2-setuptools were the sole entry.
2016-11-15 21:54:58 +01:00
ng0 e1b0b8f5b7
gnu: Fix name for ng0.
* gnu/packages/gnupg.scm: Change name in copyright header.
2016-11-15 14:36:58 -05:00
Tobias Geerinckx-Rice bb6e641588
gnu: Add httptunnel.
* gnu/packages/web.scm (httptunnel): New variable.
2016-11-15 20:27:14 +01:00
Ricardo Wurmus 84590149e6
gnu: hisat: Fix typo.
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
2016-11-15 20:21:08 +01:00
Ricardo Wurmus 49c2665f7b
gnu: Add pcb-rnd.
* gnu/packages/engineering.scm (pcb-rnd): New variable.
2016-11-15 20:21:03 +01:00
Hartmut Goebel 15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15 17:37:48 +01:00
Hartmut Goebel aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2.
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
  configure-flags.
* doc/guix.texi (Python Modules): Document it.
2016-11-15 17:37:40 +01:00
Efraim Flashner b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
2016-11-15 15:25:15 +02:00
Efraim Flashner f5a077b10f
gnu: octave: Update to 4.2.0.
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
Efraim Flashner fccab9931c
gnu: parallel: Update to 20161022.
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
2016-11-15 11:45:53 +02:00
Efraim Flashner 6312043ca5
gnu: libcdio: Update to 0.94.
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
2016-11-15 11:13:24 +02:00
Efraim Flashner 3ded2761ab
gnu: gvpe: Update to 3.0.
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
2016-11-15 11:06:15 +02:00
Efraim Flashner 336f830961
gnu: cryptsetup: Update to 1.7.3.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
2016-11-15 09:45:37 +02:00
Efraim Flashner 538fe01934
gnu: python-vcversioner: Update to 2.16.0.0.
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-11-15 09:45:28 +02:00
Tobias Geerinckx-Rice 1f781865fb
gnu: fish: Update to 2.4.0.
* gnu/packages/shells.scm (fish): Update to 2.4.0.
2016-11-15 01:17:01 +01:00
Tomáš Čech 028bf3c0b2
gnu: connman: Use localstatedir outside of store.
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
2016-11-15 00:13:29 +01:00
Efraim Flashner 8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'.
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
2016-11-14 22:49:50 +02:00
Efraim Flashner 571ffdebc3
gnu: accountsservice: Update to 0.6.43.
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
2016-11-14 21:02:10 +02:00
Ludovic Courtès a4cb821791
gnu: guix-devel: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855.
2016-11-14 15:39:32 +01:00
Ludovic Courtès 198eac2bca
gnu: guix: Really skip all the container tests.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
2016-11-14 15:39:32 +01:00
Tobias Geerinckx-Rice 88eaed6174
gnu: libpsl: Update to 0.15.0.
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
2016-11-14 14:12:50 +01:00
Efraim Flashner 7ca37da855
gnu: libinput: Enable GUI event tool.
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
2016-11-14 13:06:02 +02:00
Efraim Flashner 73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically.
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
2016-11-14 12:15:40 +02:00
Efraim Flashner 8c5cdf5f20
gnu: libinput: Update to 1.5.1.
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
2016-11-14 12:12:26 +02:00
Efraim Flashner b231b057cd
gnu: wayland-protocols: Update to 1.7.
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
2016-11-14 11:55:01 +02:00
Andy Patterson e66f0dd232
gnu: mpv: Use lua@5.2.
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
2016-11-14 09:03:55 +00:00
Leo Famulari d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524.
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
2016-11-13 17:01:01 -05:00
Leo Famulari 27d7c4e93a
gnu: signify: Update to 20.
* gnu/packages/crypto.scm (signify): Update to 20.
2016-11-13 17:01:01 -05:00
Ludovic Courtès 142530178d
gnu: mailutils: Update to 3.0.
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-11-13 21:12:32 +01:00
Efraim Flashner d81850d438
gnu: guile-ncurses: Update to 2.1.
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
2016-11-13 22:02:05 +02:00
Tobias Geerinckx-Rice 927d850512
gnu: btrfs-progs: Update to 4.8.3.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice 917239ff99
gnu: tidy: Use ‘modify-phases’.
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice 3b0ac79500
gnu: protobuf: Replace dead Google Code home-page.
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
2016-11-13 13:33:59 +01:00
Tobias Geerinckx-Rice 3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
2016-11-13 13:33:59 +01:00
Andy Patterson c25a51d5c6
gnu: clisp: Use readline@6.2.
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:00:44 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Efraim Flashner 15abcabe4e
gnu: Add newsbeuter.
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-12 20:50:48 +02:00
Efraim Flashner c76dab7b36
gnu: Add stfl.
* gnu/packages/ncurses.scm (stfl): New variable.
2016-11-12 20:50:47 +02:00
Alex Sassmannshausen 8883b30165
gnu: Add perl-modern-perl.
* gnu/packages/perl.scm (perl-modern-perl): New variable.
2016-11-12 18:26:28 +01:00
Leo Famulari 5c66314bd9
gnu: libtiff: Fix CVE-2016-9273.
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
2016-11-12 11:05:19 -05:00
Danny Milosavljevic 0a7f17f0e0
gnu: Add python-flask-restplus.
* gnu/packages/python.scm (python-flask-restplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:17:40 +01:00
Danny Milosavljevic 1e6112d89f
gnu: Add python-rednose.
* gnu/packages/python.scm (python-rednose): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:15:08 +01:00
Danny Milosavljevic e2fca4906e
gnu: Add python-termstyle.
* gnu/packages/python.scm (python-termstyle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:10:23 +01:00
Ludovic Courtès 998f9ac56d
gnu: guix: Update development snapshot.
This is a followup to 166ba5b102.

* gnu/packages/package-management.scm (guix-devel): Update to commit
166ba5b102.
2016-11-12 14:49:04 +01:00
Clément Lassieur 4a38422157
gnu: prosody: fix SSL/TLS.
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 13:04:45 +01:00
Ben Woodcroft 8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10.
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
2016-11-11 22:56:13 +10:00
Ben Woodcroft e87dfdee86
gnu: ruby-arel: Update to 7.1.4.
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
2016-11-11 22:48:22 +10:00
Ben Woodcroft 16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1.
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
2016-11-11 22:45:38 +10:00
Ben Woodcroft 81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2.
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
2016-11-11 22:44:03 +10:00
Ben Woodcroft c59491183a
gnu: ruby-rspec-core: Update to 3.5.4.
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
2016-11-11 22:40:39 +10:00
Ben Woodcroft bb4bcb02c2
gnu: bundler: Update to 1.13.6.
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
2016-11-11 22:38:13 +10:00
Ben Woodcroft e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions.  Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-11 22:15:37 +10:00
Ricardo Wurmus 7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus 0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus 83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11 09:08:07 +01:00
Leo Famulari 071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11 01:31:19 -05:00
Leo Famulari 86fc6fe777
gnu: linux-libre: Update to 4.8.7.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
2016-11-11 01:31:15 -05:00
Ludovic Courtès 472fc855bc
gnu: Add guile-aspell.
* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11 00:23:16 +01:00
Ludovic Courtès 2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
2016-11-11 00:23:16 +01:00
Leo Famulari aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10 18:17:50 -05:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
Ricardo Wurmus 3f62fa2b81
gnu: inkscape: Use modify-phases syntax.
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
2016-11-10 18:49:48 +01:00
Marius Bakke 65d2f396f7
gnu: vim: Update to 8.0.0073.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10 17:30:08 +00:00
Ludovic Courtès 9e4e431e04
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c.
2016-11-10 18:01:44 +01:00
Paul Garlick 1c79e0861a
gnu: gmsh: Update to 2.14.1
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
Marius Bakke 1b35fea19f
gnu: milkytracker: Update upstream location.
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.

Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10 16:33:57 +00:00
Leo Famulari 8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
2016-11-10 11:33:20 -05:00
Tobias Geerinckx-Rice f34284abcb
gnu: claws-mail: Update to 3.14.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
2016-11-10 14:30:09 +01:00
Hartmut Goebel 99abcdbd9b
gnu: Add pdfposter.
* gnu/packages/pdf.scm(pdfposter): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel c68e8591d8
gnu: Add python2-pypdf.
* gnu/packages/pdf.scm (python2-pypdf): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel ad5a7d49c3
gnu: Add python-pypdf2.
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
2016-11-10 14:26:04 +01:00
Ludovic Courtès 8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings.
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
2016-11-09 21:24:44 +01:00
Thomas Danckaert 8bb115e0c6
gnu: Add kdevelop-pg-qt.
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Thomas Danckaert 5a16e1c04e
gnu: Add libkomparediff2.
* gnu/packages/kde.scm (libkomparediff2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Ludovic Courtès 28791c1c8d
gnu: hidapi: Fix 'license'.
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
2016-11-09 21:24:44 +01:00
Efraim Flashner 65dccb3a86
gnu: Add vifm.
* gnu/packages/vim.scm (vifm): New variable.
2016-11-09 20:56:36 +02:00
Leo Famulari 0b34b58688
gnu: libxslt: Fix CVE-2016-4738.
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
2016-11-09 10:19:49 -05:00
Efraim Flashner d887f420d2
gnu: postgresql: Update to 9.5.5.
* gnu/packages/databases.scm (postgresql): Update to 9.5.5.
[home-page]: Use https.
2016-11-09 11:39:30 +02:00
Efraim Flashner bc332a638b
gnu: mariadb: Update to 10.1.19.
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
2016-11-09 11:04:36 +02:00
Ludovic Courtès de7da4e5d1
gnu: gnome-calculator: Update to 3.22.2.
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.22.2.
2016-11-09 09:25:18 +01:00
Ludovic Courtès 7894ea6122
gnu: gcc-arm-none-eabi-4.9: Remove non-applicable patch.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)[patches]: Remove
"gcc-arm-bug-71399.patch" from XGCC's patches.
2016-11-08 23:57:29 +01:00
Efraim Flashner e3ec6c806a
gnu: mate-themes: Update to 3.20.9.
* gnu/packages/mate.scm (mate-themes): Update to 3.20.9.
[source]: Update package location.
[inputs]: Remove gtk+-2, add gtk+-3.
[description]: Add note about dual gtk+-2/gtk+-3 support.
2016-11-08 22:53:43 +02:00
Efraim Flashner 27caff1b5d
gnu: mate-menus: Update to 1.16.0.
* gnu/packages/mate.scm (mate-menus): Update to 1.16.0.
[propagated-inputs]: Move glib ...
[inputs]: ... to here.
2016-11-08 22:35:27 +02:00
Efraim Flashner 9927943c30
gnu: mate-desktop: Update to 1.16.1.
* gnu/packages/mate.scm (mate-desktop): Update to 1.16.1.
[arguments]: Build with gtk+-3, enable mpaste.
[propagated-inputs]: Remove gtk+-2, move libxrandr,
startup-notification ...
[inputs]: ... to here.  Add gtk+-3, python-2.
2016-11-08 22:18:07 +02:00
Efraim Flashner b6c5ad8564
gnu: mate-icon-theme: Update to 1.16.0.
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.16.0.
2016-11-08 22:16:54 +02:00
Efraim Flashner 065999807d
gnu: libmateweather: Update to 1.16.1.
* gnu/packages/mate.scm (libmateweather): Update to 1.16.1.

[arguments]: Build with gtk+-3.
[propagated-inputs]: Remove gtk+-2, move gdk-pixbuf ...
[inputs]: ... to here. Add gtk+-3.
2016-11-08 22:16:18 +02:00
Ricardo Wurmus 8ae6040451
gnu: Add faust-2.
* gnu/packages/audio.scm (faust-2): New variable.
2016-11-08 21:00:02 +01:00
Ricardo Wurmus 83c49858b5
gnu: Add LLVM variant with RTTI support.
* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
2016-11-08 20:59:58 +01:00
Marius Bakke f0ad50af8c
gnu: python-tempest-lib: Update to 1.0.0.
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:48 +00:00
Marius Bakke 43b53bbbf5
gnu: python-os-testr: Update to 0.8.0.
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update
to 0.8.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:18 +00:00
Marius Bakke eaba9d6670
gnu: python-jsonschema: Correct inputs.
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove
python-setuptools. Move python-vcversioner to ...
[native-inputs]: ... here.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Move
python2-functools32 to ...
[propagated-inputs]: ... here.
[native-inputs]: Add python2-setuptools.
2016-11-08 18:22:07 +00:00
Leo Famulari c163a28473
gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}].
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
2016-11-08 12:48:26 -05:00
Marius Bakke 912dcbad86
gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3.
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.5.3.
[native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
2016-11-08 16:14:15 +00:00
Leo Famulari fca4ff3559
gnu: Add python-pytest-2.9.2.
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-11-08 16:14:04 +00:00
Leo Famulari 667e777b4e
gnu: mupdf: Fix CVE-2016-{7504,7505,7506,7563,7564,9017,9136} in bundled mujs.
* gnu/packages/patches/mupdf-CVE-2016-7504.patch,
gnu/packages/patches/mupdf-CVE-2016-7505.patch
gnu/packages/patches/mupdf-CVE-2016-7506.patch
gnu/packages/patches/mupdf-CVE-2016-7563.patch
gnu/packages/patches/mupdf-CVE-2016-7564.patch
gnu/packages/patches/mupdf-CVE-2016-9017.patch
gnu/packages/patches/mupdf-CVE-2016-9136.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2016-11-08 11:03:14 -05:00
Efraim Flashner 72246dc029
gnu: gcc@4.7: Build with texinfo@5.
* gnu/packages/gcc.scm (gcc@4.7)[native-inputs]: Use texinfo@5 in place
of texinfo@6.
2016-11-08 16:24:29 +02:00
Theodoros Foradis 842a1400a7
gnu: Add plantuml.
* gnu/packages/uml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Roel Janssen <roel@gnu.org>
2016-11-08 14:59:04 +01:00
Leo Famulari 5045d80ff1
gnu: gnupg: Add TODO comment about custom build phase.
* gnu/packages/gnupg.scm (gnupg)[arguments]: Add comment.
2016-11-08 04:07:23 -05:00
Efraim Flashner a00fbe8adf
gnu: keepassx: Update to 2.0.3.
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.3.
[inputs]: Add libxi.
2016-11-07 21:57:00 +02:00
Efraim Flashner 2523691a22
gnu: owncloud-client: Update to 2.2.4.
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.4.
[arguments]: Enable tests, disable two failing tests.
[inputs]: Remove python-wrapper, qt, ruby.  Add qtbase, qtwebkit.
Move perl ...
[native-inputs]: ... to here.  Add cmocka and qttools.
2016-11-07 21:56:47 +02:00
Danny Milosavljevic 6a686b18e0
gnu: python-sqlalchemy-utils: Mention optional dependencies in description.
* gnu/packages/python.scm (python-sqlalchemy-utils,
python2-sqlalchemy-utils)[description]: Mention optional dependencies.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-07 12:49:03 -05:00
Marius Bakke 1581406e23
gnu: Add efibootmgr.
* gnu/packages/linux.scm (efibootmgr): New variable.
2016-11-07 12:12:59 +00:00
Marius Bakke 0d74462a5f
gnu: Add efivar.
* gnu/packages/linux.scm (efivar): New variable.
2016-11-07 12:12:56 +00:00
Ben Woodcroft 06028aed7c
gnu: ruby-tzinfo-data: Update to 1.2016.9.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.9.
2016-11-07 21:36:24 +10:00
Ben Woodcroft 17ba688c49
gnu: ruby-sqlite3: Update to 1.3.12.
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.12.
2016-11-07 21:35:31 +10:00
Ben Woodcroft e7d1d472cd
gnu: ruby-shoulda-context: Update to 1.2.2.
* gnu/packages/ruby.scm (ruby-shoulda-context): Update to 1.2.2.
2016-11-07 21:35:07 +10:00
Ben Woodcroft ca0839142e
gnu: ruby-domain-name: Update to 0.5.20161021.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20161021.
2016-11-07 21:34:15 +10:00
Ben Woodcroft 2a2eb07d87
gnu: ruby-http-cookie: Update to 1.0.3.
* gnu/packages/ruby.scm (ruby-http-cookie): Update to 1.0.3.
2016-11-07 21:33:41 +10:00
Ben Woodcroft 420fdfef9a
gnu: ruby-sequel: Update to 4.40.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.40.0.
2016-11-07 21:32:32 +10:00
Ben Woodcroft 3cf7c31720
gnu: diamond: Update to 0.8.26.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.26.
2016-11-07 21:31:09 +10:00
Thomas Danckaert bd9174860c
gnu: texmaker: Use modular qt and qtwebkit.
* gnu/packages/tex.scm (texmaker)[inputs]: Use modular qt and qtwebkit.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
Thomas Danckaert 47e1d280d5
gnu: Add qtwebkit.
* gnu/packages/qt.scm (qtwebkit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
Efraim Flashner fbc44ef2cd
gnu: nano: Update to 2.7.1.
* gnu/packages/nano.scm (nano): Update to 2.7.1.
[home-page]: Use https.
2016-11-07 07:55:01 +02:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
Leo Famulari 14ac8e4865
gnu: jansson: Update to 2.9.
* gnu/packages/web.scm (jansson): Update to 2.9.
[source]: Remove 'jansson-CVE-2016-4425.patch'.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-06 19:50:30 -05:00
Ludovic Courtès 19ac2ba858
gnu: glibc: Add version 2.23.
* gnu/packages/base.scm (glibc-2.23): New variable.
2016-11-07 00:44:56 +01:00
Ludovic Courtès fd68cc2c8b
gnu: ghostscript: Add 'upstream-name' property.
This allows 'guix refresh' to do the right thing.

* gnu/packages/ghostscript.scm (ghostscript)[properties]: New field.
2016-11-06 23:52:32 +01:00
Leo Famulari 2ad0240c56
gnu: acme-client: Update to 0.1.14.
* gnu/packages/tls.scm (acme-client): Update to 0.1.14.
2016-11-06 15:58:22 -05:00
Marius Bakke a95403876e
gnu: vim: Update to 8.0.0069.
* gnu/packages/vim.scm (vim): Update to 8.0.0069.
2016-11-06 20:44:43 +00:00
Efraim Flashner 63d8f08fbf
gnu: qtmultimedia: Remove bundled library.
* gnu/packages/qt.scm (qtmultimedia)[source]: Remove bundled library.
2016-11-06 22:25:11 +02:00
Efraim Flashner c04854da93
gnu: qtimageformats: Remove bundled libraries.
* gnu/packages/qt.scm (qtimagesformats)[source]: Remove bundled 3rd
party libraries.
2016-11-06 22:25:11 +02:00
Danny Milosavljevic 26d07efb79
gnu: python-sqlalchemy-utils: Use python-pytest.
* gnu/packages/python.scm (python-sqlalchemy-utils)[native-inputs]: Add
python-pytest.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:15 +00:00
Danny Milosavljevic c22b4f87c2
gnu: python-sqlalchemy-utils: Propagate existing inputs.
* gnu/packages/python.scm (python-sqlalchemy-utils)[inputs]: Move to ...
[propagated-inputs]: ... here.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic 462bf27157
gnu: Add python-flask-babel.
* gnu/packages/python.scm (python-flask-babel, python2-flask-babel):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic 9dede065ba
gnu: Add python-furl.
* gnu/packages/python.scm (python-furl, python2-furl): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic b91912c42a
gnu: Add python-orderedmultidict.
* gnu/packages/python.scm (python-orderedmultidict, python2-orderedmultidict):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
Danny Milosavljevic 4a0933307e
gnu: Add python-pycodestyle.
* gnu/packages/python.scm (python-pycodestyle, python2-pycodestyle):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
Marius Bakke f4dc22bcd9
gnu: nmap: Update to 7.31.
* gnu/packages/admin.scm (nmap): Update to 7.31.
[arguments]: Add phase 'patch-Makefile' to prevent lua from being built.
2016-11-06 16:17:29 +00:00
Marius Bakke 331ef882ff
gnu: wireshark: Use lua-5.2.
* gnu/packages/networking.scm (wireshark)[inputs]: Change from 'lua' to
'lua-5.2'.
2016-11-06 16:17:27 +00:00
Marius Bakke 6dbf1fec0d
gnu: lua: Update to 5.3.3.
* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.
2016-11-06 16:17:16 +00:00
ng0 f0badf98d7
gnu: pingus: Update upstream location.
* gnu/packages/games.scm (pingus)[source]: Update source uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:33 +02:00
ng0 73ea83f517
gnu: r-proto: Update project's home-page.
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:21 +02:00
Hartmut Goebel fab959d308
gnu: java-hamcrest-core: Fix build.
Since we now remove the directory "lib" from the source, we need to
create a directory where build.xml searches for .jar-files.

* gnu/packages/java.scm (java-hamcrest-core)[pahases]: New phase
  create-dummy-directories.
2016-11-06 11:49:12 +01:00
Hartmut Goebel e5213cd63b
gnu: java-hamcrest-core: Remove wrong source file-name.
The sources file-name was set to "java-hamcrest-core", while it contains
not only the "core" but all of hamcrest. Further the source archive
already has the correct name.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Remove file-name.
2016-11-06 10:55:08 +01:00
Hartmut Goebel 006728966a
gnu: java-hamcrest-core: Update upstream location.
The checksum changed since the new location's archive contains no
jar-files (except those of external libraries) and line endings are
different.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Update source
  uri and checksum. [snippet]: Remove directory "lib" completely.
2016-11-06 10:42:57 +01:00
Efraim Flashner 937bc2d137
gnu: bullet: Update to 2.85.1.
* gnu/packages/game-development.scm (bullet): Update to 2.85.1.
[source]: Change to new Github url.
[arguments]: Enable tests, build shared libraries.
[inputs]: Add glu, libx11, mesa.
2016-11-06 10:30:18 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Mark H Weaver 7f4658983a
gnu: epiphany: Update to 3.22.1.
* gnu/packages/gnome.scm (epiphany): Update to 3.22.1.
2016-11-06 02:55:52 -05:00
Efraim Flashner 569fc290b3
gnu: ibus: Update to 1.5.14.
* gnu/packages/ibus.scm (ibus): Update to 1.5.14.
[arguments]: Disable emojis.
[inputs]: Add json-glib.
[home-page]: Use project's new home-page.
2016-11-05 23:23:37 +02:00
Efraim Flashner 7acc2a3eb3
gnu: libkate: Update upstream location.
* gnu/packages/xiph.scm (libkate)[source]: Update source uri.
[home-page]: Update project's home-page.
2016-11-05 23:23:36 +02:00
ng0 2c62b31619
gnu: w3m: Fix the commit string.
* gnu/packages/w3m.scm (w3m)[source]: Fix the commit string.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 17:12:24 -04:00
Leo Famulari 683cdbf51b
gnu: python-axolotl-curve25519: Fix license.
* gnu/packages/python.scm (python-axolotl-curve25519,
python2-axolotl-curve25519)[license]: Replace ISC with BSD-3.
2016-11-05 16:34:14 -04:00
Arun Isaac 06ff083754
gnu: Add python-axolotl.
* gnu/packages/python.scm (python-axolotl, python2-axolotl): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:19 -04:00
Arun Isaac 2f6dd9cdef
gnu: Add python-axolotl-curve25519.
* gnu/packages/python.scm (python-axolotl-curve25519,
  python2-axolotl-curve25519): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:15 -04:00
Leo Famulari 9422c98a0a
gnu: python-imagesize: Disable the test suite.
* gnu/packages/python.scm (python-imagesize, python2-imagesize)[arguments]:
Disable the tests.
2016-11-05 14:13:39 -04:00
Leo Famulari 2d125a9b21
gnu: weex: Update to 2.8.2 [fixes CVE-2005-3150].
* gnu/packages/ftp.scm (weex): Update to 2.8.2.
[source]: Use new URL. Remove obsolete 'weex-vacopy.patch'.
[arguments]: Remove custom 'configure' phase and add 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and gnu-gettext.
* gnu/packages/patches/weex-vacopy.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-05 13:31:44 -04:00
Efraim Flashner 268b3802e9
gnu: whois: Update to 5.2.13.
* gnu/packages/networking.scm (whois): Update to 5.2.13.
2016-11-05 17:46:55 +02:00
Efraim Flashner 0cee33ac96
gnu: gst-plugins-bad: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.0.
[inputs]: Remove wayland.
[tests]: Update comment about failing tests.
[home-page]: Use https.
2016-11-05 17:41:39 +02:00
Efraim Flashner 18a9a7ef38
gnu: jasper: Update to 1.900.19.
* gnu/packages/image.scm (jasper): Update to 1.900.19.
[arguments]: Remove custom make-flags.
2016-11-05 17:41:38 +02:00
Efraim Flashner 378a0535e1
gnu: freeipmi: Update to 1.5.5.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.5.
2016-11-05 17:41:38 +02:00
Efraim Flashner 96451462c5
gnu: python-gst: Update to 1.10.0.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.0.
2016-11-05 17:41:38 +02:00
Efraim Flashner 81fc4b20c7
gnu: gst-libav: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 7aa083e581
gnu: gst-plugins-ugly: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 49eddefbf0
gnu: gst-plugins-good: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 74e6c84444
gnu: gst-plugins-base: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner e2a2eeecce
gnu: gstreamer: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.0.
2016-11-05 17:41:36 +02:00
ng0 05234973c7
gnu: Add mps-youtube.
* gnu/packages/video.scm (mps-youtube): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
ng0 02f8f804f0
gnu: Add python-pafy.
* gnu/packages/python.scm (python-pafy): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
Leo Famulari c2f4cab9a0
gnu: libidn: Distinguish from libidn2.
* gnu/packages/libidn.scm (libidn)[description]: Add detail to help distinguish
from libidn2.
2016-11-05 01:12:35 -04:00
Leo Famulari 250a8abc66
gnu: Add libidn2.
* gnu/packages/libidn.scm (libidn2): New variable.
2016-11-05 01:12:31 -04:00
Kei Kebreau 674a0f9558
gnu: w3m: Switch to Debian's actively maintained fork of w3m.
Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3>

* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-04 20:06:03 -04:00
Leo Famulari 682bfb8124
gnu: webkitgtk: Update to 2.14.2.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-11-04 19:49:11 -04:00
Ricardo Wurmus c27ae827da
gnu: Add jupyter.
* gnu/packages/python.scm (jupyter): New variable.
2016-11-04 21:23:08 +01:00
Ricardo Wurmus accd5f996e
gnu: python-ipython: Update to 4.0.0.
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus 8ceebf8fa6
gnu: Add python-jupyter-console.
* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus 4fe2e34409
gnu: Add python-ipywidgets.
* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus d55724ed5b
gnu: Add python-widgetsnbextension.
* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus a0d62280f5
gnu: Add python-notebook.
* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus c60898a845
gnu: Add python-nbconvert.
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus 60590a3ae8
gnu: Add python-entrypoints.
* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.
2016-11-04 21:23:04 +01:00
Kei Kebreau 08722837b0
gnu: chromium-bsu: Update to 0.9.16.1.
* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.
2016-11-04 11:17:09 -04:00
Ludovic Courtès bd2e1a8cb0
gnu: cross-base: Remove exports of cross compilers.
They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html>.

* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.
2016-11-04 15:36:00 +01:00
Ludovic Courtès fb77c61422
gnu: Remove '%final-inputs' references at the top level.
Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon.  This patch addresses one of
the remaining cases.

* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.
2016-11-04 15:36:00 +01:00
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory.
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory.
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity.
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri.
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
宋文武 1a79d4767a
gnu: xmp: Update to 4.1.0.
* gnu/packages/audio.scm (xmp): Update to 4.1.0.
2016-11-04 21:08:44 +08:00
宋文武 2784fca032
gnu: libxmp: Update to 4.4.1.
* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
2016-11-04 21:08:44 +08:00
Florian Paul Schmidt 18f3d92b39
gnu: Add swh-plugins-lv2.
* gnu/packages/audio.scm (swh-plugins-lv2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-11-04 12:11:06 +01:00
Ricardo Wurmus 55436048d8
gnu: Add python-bleach.
* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
2016-11-04 11:32:35 +01:00
Ricardo Wurmus 2d321bb2c5
gnu: Add python-nbformat.
* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
2016-11-04 11:29:16 +01:00
Ricardo Wurmus 8ee62c97f6
gnu: Add python-html5lib-0.9.
* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
2016-11-04 11:26:34 +01:00
Ricardo Wurmus 5ff6effcc0
gnu: Add python-testpath.
* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
2016-11-04 11:24:02 +01:00
Ricardo Wurmus ab526102ed
gnu: Add python-ipykernel.
* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
2016-11-04 11:23:19 +01:00
Ricardo Wurmus 9ff01f2d01
gnu: Add python-jupyter-client.
* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
2016-11-04 11:22:54 +01:00
Ricardo Wurmus 4263b06fa2
gnu: Add python-jupyter-core.
* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
2016-11-04 11:21:37 +01:00
Ricardo Wurmus a5ba14811a
gnu: python-traitlets: Update to 4.2.0.
* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
2016-11-04 11:19:22 +01:00
Leo Famulari 8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function.
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
2016-11-04 01:44:42 -04:00
Marius Bakke 6e1d7aa94e
gnu: Add font-adobe-source-code-pro.
* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
2016-11-03 20:32:04 +00:00
Marius Bakke b4edcd28cf
gnu: Add geteltorito.
* gnu/packages/cdrom.scm (geteltorito): New variable.
2016-11-03 20:31:36 +00:00
Kei Kebreau ccbc575824
gnu: maxima: Update to 5.38.1.
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
Kei Kebreau 043f1535c2
gnu: starfighter: Update to 1.6.
* gnu/packages/games.scm (starfighter): Update to 1.6.
2016-11-03 15:40:17 -04:00
Ricardo Wurmus ed8fbe5e62
gnu: r-rcas: Update to 1.0.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus 16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus c15ae9b008
gnu: r-biocparallel: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus 5b3b2d2f02
gnu: r-limma: Update to 3.30.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus ed3054231d
gnu: r-edger: Update to 3.16.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0.
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival.
* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus ac3265abad
gnu: Add r-htmltable.
* gnu/packages/web.scm (r-htmltable): New variable.
2016-11-03 19:01:44 +01:00
Kei Kebreau b81245ccb3
[PATCH] gnu: Add libjxr.
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
2016-11-03 13:43:23 -04:00
Danny Milosavljevic b054b26a48
gnu: sunxi-tools: Update to 1.4.1.
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags.  Remove 'fix-Makefile'
phase.  Add 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 15:58:04 +01:00
Arun Isaac 5d68e9d620
gnu: Add pdf2svg.
* gnu/packages/pdf.scm (pdf2svg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 14:33:50 +01:00
Ludovic Courtès 4c93fe83e8
gnu: mesa: Apply MIPS patch conditionally.
Fixes <http://bugs.gnu.org/24833>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/gl.scm (mesa)[source](patches): Remove.
[native-inputs]: Add conditional "mips-patch" input.
[arguments]: Add conditional 'apply-mips-patch' phase.
2016-11-03 11:24:39 +01:00
ng0 05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-02 23:16:11 -04:00
Leo Famulari b3cc0dce08
Merge branch 'master' into core-updates 2016-11-02 20:03:35 -04:00
Alex Sassmannshausen e681e347c4
gnu: Add perl-getopt-long.
* gnu/packages/perl.scm (perl-getopt-long): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-02 14:23:24 +00:00
Marius Bakke cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
2016-11-02 12:01:37 +00:00
Mark H Weaver ac1dc6d12f
gnu: linux-libre: Update to 4.8.6.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
2016-11-02 07:31:53 -04:00
Mark H Weaver b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
2016-11-02 07:29:28 -04:00
Ricardo Wurmus d439aa36ce
gnu: perl-test-simple: Update to 1.302062.
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
2016-11-02 11:51:46 +01:00
Marius Bakke 24dfc13bfa
gnu: re2: Update to 2016-11-01.
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
2016-11-02 05:34:09 +00:00
Leo Famulari 86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
2016-11-01 21:46:09 -04:00
Leo Famulari e777d07db9
gnu: iproute2: Update to 4.8.0.
* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.
2016-11-01 21:46:06 -04:00
David Thompson 2c1d46b257
gnu: love: Update to 0.10.2.
* gnu/packages/game-development.scm (love): Update to 0.10.2.
2016-11-01 21:03:18 -04:00
Ludovic Courtès 21f828e02e
gnu: emacs-debbugs: Update to 0.12.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.
2016-11-01 22:23:48 +01:00
Leo Famulari 3325803b0b
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].
* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.
2016-11-01 17:03:12 -04:00
Leo Famulari e3e3e488a1
gnu: diffoscope: Update to 62.
* gnu/packages/package-management.scm (diffoscope): Update to 62.
2016-11-01 16:17:12 -04:00
Marius Bakke bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-01 14:02:01 -04:00
Marius Bakke b56d9ce304
gnu: xapian: Update to 1.4.1.
* gnu/packages/search.scm (xapian): Update to 1.4.1.
2016-11-01 10:37:19 +00:00
Efraim Flashner 6846f08471
gnu: Correct hackage mirror usage.
* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.
2016-11-01 10:37:18 +02:00
Leo Famulari 40330e555f
gnu: icecat: Fix build with binutils >= 2.26.
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
2016-10-31 20:59:40 -04:00
Marius Bakke b3df4d7e57
gnu: Add speech-dispatcher.
* gnu/packages/speech.scm (speech-dispatcher): New variable.
2016-11-01 00:05:22 +00:00
Marius Bakke 0905048ab3
gnu: Add dotconf.
* gnu/packages/textutils.scm (dotconf): New variable.
2016-11-01 00:05:22 +00:00
Ricardo Wurmus 6e9d5d5fba
gnu: librecad: Update to 2.1.3.
* gnu/packages/engineering.scm (librecad): Update to 2.1.3.
2016-10-31 23:10:48 +01:00
Tobias Geerinckx-Rice e6efcd5837
gnu: virt-manager: Fix build by including 'gtk-update-icon-cache'.
* gnu/packages/qemu.scm (virt-manager)[native-inputs]: Add gtk+:bin.
2016-10-31 22:44:30 +01:00
Tobias Geerinckx-Rice 88dfd8b8aa
gnu: cups-minimal: Update to 2.2.1.
* gnu/packages/cups.scm (cups-minimal): Update to 2.2.1.
[source]: Use new https://github.com download URL.
2016-10-31 22:33:51 +01:00
Leo Famulari 65a3bdf7eb
gnu: borg: Run the tests with python-pytest-2.9.2.
* gnu/packages/backup.scm (borg)[native-inputs]: Use python-pytest-2.9.2.
2016-10-31 17:02:38 -04:00
Leo Famulari 0bc6ef2a87
gnu: Add python-pytest-2.9.2.
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-10-31 17:02:34 -04:00
Manolis Ragkousis d76181a7a3
gnu: cross-libc: Use the correct libc.
* gnu/packages/cross-base.scm (cross-libc): Use cross-libc-for-target
to determine the correct libc to use.
2016-10-31 19:42:26 +02:00
Leo Famulari fdc45ab1b0
gnu: imagemagick: Update to 6.9.6-3.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-3.
2016-10-31 13:31:32 -04:00
Federico Beffa 1a86b671ce
gnu: Add ghc-gnuplot.
* gnu/packages/haskell.scm (ghc-gnuplot): New variable.
2016-10-31 16:13:38 +01:00
Federico Beffa a5cbef03ba
gnu: Add ghc-utility-ht.
* gnu/packages/haskell.scm (ghc-utility-ht): New variable.
2016-10-31 16:13:35 +01:00
Federico Beffa 81a1191922
gnu: Add ghc-data-access-transformers.
* gnu/packages/haskell.scm (ghc-data-access-transformers): New variable.
2016-10-31 16:13:33 +01:00
Federico Beffa 505e0150dc
gnu: Add ghc-data-accessor.
* gnu/packages/haskell.scm (ghc-data-accessor): New variable.
2016-10-31 16:13:31 +01:00
Federico Beffa 6af886f492
gnu: geiser-next: Re-introduce it.
* gnu/packages/emacs.scm (geiser-next): Re-introduce it.
2016-10-31 16:13:27 +01:00
Federico Beffa 149c652378
gnu: Add chez-scmutils.
* gnu/packages/chez.scm (chez-scmutils): New variable.
2016-10-31 16:13:25 +01:00
Federico Beffa 53b9684e33
gnu: Add chez-mit.
* gnu/packages/chez.scm (chez-mit): New variable.
2016-10-31 16:13:23 +01:00
Federico Beffa 08fc0d68f0
gnu: haskell-mode: Update to 16.1.
* gnu/packages/emacs.scm (haskell-mode): Update to 16.1.
  [inputs]: Add 'emacs-el-search' and 'emacs-stream'.
  [propagated-inputs]: Add 'emacs-dash'.
  [arguments]: Add modules. Adapt 'pre-build' and 'install' phases.
2016-10-31 16:13:21 +01:00
Federico Beffa 0fc06f3eba
gnu: Add emacs-el-search.
* gnu/packages/emacs.scm (emacs-el-search): New variable.
2016-10-31 16:13:17 +01:00
Federico Beffa 8f50634ba4
gnu: Add emacs-stream.
* gnu/packages/emacs.scm (emacs-stream): New varaible.
2016-10-31 16:13:09 +01:00
Ludovic Courtès 5bde4503ee
gnu: ld-wrapper-boot0: Work around strict evaluation of (%current-system).
Reported by Mark H Weaver <mhw@netris.org>
Partly fixes <http://bugs.gnu.org/24832>.

'ld-wrapper-boot0' was evaluating strictly instead of lazily, leading to
invalid system types.

* gnu/packages/base.scm (make-ld-wrapper): Turn #:target into a
one-argument procedure.  Honor it.
* gnu/packages/commencement.scm (ld-wrapper-boot0): Fix 'name' argument
to 'make-ld-wrapper'.  Make #:target argument a procedure.
* gnu/packages/cross-base.scm (cross-gcc): Adjust #:target argument.
2016-10-31 16:06:30 +01:00
Marius Bakke c907beec92
gnu: fio: Update to 2.15.
* gnu/packages/benchmark.scm (fio): Update to 2.15.
2016-10-31 11:15:08 +00:00
Marius Bakke 58fdab1d13
gnu: Add ccid.
* gnu/packages/security-token.scm (ccid): New variable.
2016-10-31 10:10:26 +00:00
Ricardo Wurmus 6d1b3bf55b
gnu: openocd: Correct license.
* gnu/packages/embedded.scm (openocd)[license]: Change to gpl2+.
2016-10-31 10:41:54 +01:00
Leo Famulari 77e9c9931e
gnu: shotwell: Fix build by including 'gtk-update-icon-cache'.
* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add gtk+:bin.
2016-10-31 01:28:52 -04:00
Leo Famulari 205f0107bb
Merge branch 'master' into core-updates 2016-10-30 19:19:21 -04:00
Leo Famulari b89cbf5832
gnu: libtiff: Fix CVE-2016-5652.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-fixed)[source]: Use it.
2016-10-30 19:07:49 -04:00
Ludovic Courtès a7db8540a7
gnu: guix: Always depend on the development dependencies.
Suggested by Chris Marusich <cmmarusich@gmail.com> at
<https://lists.gnu.org/archive/html/guix-devel/2016-10/msg00425.html>.

* gnu/packages/package-management.scm (guix-0.11.0)[native-inputs]: Add
Autoconf, Automake, Gettext, Texinfo, Graphviz, and Help2man.
(guix-devel)[native-inputs]: Remove.
2016-10-30 23:14:27 +01:00
Ludovic Courtès ffba9d598e
gnu: emacs-debbugs: Update to 0.11.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.11.
2016-10-30 22:59:46 +01:00
Arun Isaac b7f3cf2c9a
gnu: Add nethogs.
* gnu/packages/networking.scm (nethogs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:38:40 -04:00
Danny Milosavljevic 45b4f12727
gnu: Add python-imagesize.
* gnu/packages/python.scm (python-imagesize, python2-imagesize): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:31:11 -04:00
Ricardo Wurmus 67a3b2dd4e
gnu: python-pyusb: Prettify library substitution.
* gnu/packages/libusb.scm (python-pyusb)[arguments]: Use srfi-1 to make
the "fix-libusb-reference" phase clearer.
2016-10-30 18:57:18 +01:00
Ricardo Wurmus a8dd960ac0
gnu: python-joblib: Disable failing tests.
* gnu/packages/python.scm (python-joblib)[arguments]: Add phase to
disable failing tests.
2016-10-30 18:54:41 +01:00
Ricardo Wurmus f34ef3317e
gnu: python-joblib: Update to 0.10.3.
* gnu/packages/python.scm (python-joblib): Update to 0.10.3.
[native-inputs]: Add python-sphinx, python-docutils, python-numpydoc.
2016-10-30 17:04:24 +01:00
Efraim Flashner bae678296a
gnu: python-waf: Download over https.
* gnu/packages/python.scm (python-waf)[source]: Use https.
2016-10-30 10:43:53 +02:00
Efraim Flashner 31c6bfed58
gnu: samba: Update to 4.5.1.
* gnu/packages/samba.scm (samba): Update to 4.5.1.
2016-10-30 10:41:31 +02:00
Leo Famulari e3c1311a5d
gnu: git: Update to 2.10.2.
* gnu/packages/version-control.scm (git): Update to 2.10.2.
2016-10-29 23:02:14 -04:00
Leo Famulari 593dfdc33b
Merge branch 'master' into core-updates 2016-10-29 22:16:47 -04:00
Leo Famulari 59f1298558
gnu: python-nltk: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-nltk to fail.

* gnu/packages/python.scm (python-nltk, python2-nltk)[arguments]:
Disable the tests.
2016-10-29 22:16:19 -04:00
Leo Famulari 2ddbfa8c06
gnu: python-pyquery: Add inputs for test suite.
* gnu/packages/python.scm (python-pyquery,
python2-pyquery)[native-inputs]: Add python-webob and python-webtest.
2016-10-29 22:16:19 -04:00
宋文武 ad967bf08d
gnu: dico: Fix test failure.
* gnu/packages/dico.scm (dico)[source]: Add 'snippet' and 'modules'.
2016-10-30 09:53:11 +08:00
Leo Famulari 326f8285b3
gnu: python-graphql-core: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-graph-ql to fail.

* gnu/packages/python.scm (python-graphql-core,
python2-graphql-core)[arguments]: Disable the tests.
2016-10-29 21:50:58 -04:00
Leo Famulari 062c7e43ed
Merge branch 'master' into core-updates 2016-10-29 21:44:44 -04:00
Leo Famulari 269d9172ff
gnu: python-pika: Add inputs for test suite.
* gnu/packages/python.scm (python-pika, python2-pika)[native-inputs]: Add
python-pyev, python-tornado.
2016-10-29 21:43:24 -04:00
Leo Famulari 329b4b3b69
gnu: Add python-pyev.
* gnu/packages/python.scm (python-pyev, python2-pyev): New variables.
2016-10-29 21:43:24 -04:00
Leo Famulari bae1871059
gnu: python-prompt-toolkit: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-prompt-toolkit to fail.

* gnu/packages/python.scm (python-prompt-toolkit,
python2-prompt-toolkit)[arguments]: Disable the tests.
2016-10-29 21:43:24 -04:00
Leo Famulari 10797a0ae0
gnu: python-publicsuffix2: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-publicsuffix2 to fail.

* gnu/packages/python.scm (python-publicsuffix2, python2-publicsuffix2)
[arguments]: Disable the tests.
2016-10-29 21:43:23 -04:00
Leo Famulari a2eab4223d
gnu: python-pyechonest: Remove package.
* gnu/packages/music.scm (python-pyechonest): Remove variable.
2016-10-29 21:43:14 -04:00
Theodoros Foradis 5b83b7b854
gnu: Add openocd.
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
2016-10-30 02:34:26 +01:00
David Craven 91ba693586
gnu: Add jimtcl.
* gnu/packages/embedded.scm (jimtcl): New variable.
2016-10-30 02:33:58 +01:00
David Craven e5e45c067d
gnu: Add libjaylink.
* gnu/packages/embedded.scm (libjaylink): New variable.
2016-10-30 02:33:53 +01:00
Theodoros Foradis 3d74f12e63
gnu: Add hidapi.
* gnu/packages/libusb.scm (hidapi): New variable.
2016-10-30 02:03:04 +02:00
Theodoros Foradis 94f36a4f5e
gnu: Add gdb-arm-none-eabi.
* gnu/packages/embedded.scm (gdb-arm-none-eabi): New variable.
2016-10-30 02:02:46 +02:00
Tobias Geerinckx-Rice f4fe6c991c
gnu: cups-filters: Remove duplicate ‘--with-gs-path=’ flag.
* gnu/packages/cups.scm (cups-filters)[arguments]: Remove redundant
‘--with-gs-path=’ from #:configure-flags, left over from a botched merge.
2016-10-30 01:15:53 +02:00
Tobias Geerinckx-Rice 4ab016e0ab
gnu: cups-filters: Update to 1.11.5.
* gnu/packages/cups.scm (cups-filters): Update to 1.11.5.
[arguments]: Add ‘--with-gs-path=’ to #:configure-flags.
[inputs]: Add mupdf.
2016-10-30 01:08:15 +02:00
David Craven eaf72e218e
gnu: icecat: Enable gtk3 support.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Add gtk+.
  [arguments]: Use --enable-default-toolkit=cairo-gtk3.
2016-10-30 01:03:09 +02:00
David Craven 225d6c049e
gnu: sdcc: Enable ucsim.
* gnu/packages/sdcc.scm (arguments)[configure-flags]: Add --enable-ucsim.
2016-10-30 01:03:09 +02:00
Tobias Geerinckx-Rice 6cf626e8b3
gnu: Add yadifa.
* gnu/packages/dns.scm (yadifa): New variable.
2016-10-30 00:53:50 +02:00
Tobias Geerinckx-Rice 8ed14711dc
gnu: hplip: Update to 3.16.10.
* gnu/packages/cups.scm (hplip): Update to 3.16.10.
2016-10-30 00:47:28 +02:00
David Craven 9efa472fba
gnu: plasma-framework: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (plasma-framework): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 6c6e8b19e4
gnu: kxmlrpcclient: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kxmlrpcclient): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 19fbf93f34
gnu: kxmlgui: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kxmlgui): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 8b9b0e5eb7
gnu: kwallet: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kwallet): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven f07f67093d
gnu: ktextwidgets: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (ktextwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven b0791cf9aa
gnu: ktexteditor: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (ktexteditor): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 886d8155c1
gnu: kservice: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kservice): Update to 5.27.0.
  [native-inputs]: Add bison and flex-2.6.1.
2016-10-29 23:51:43 +02:00
David Craven dc219cc6da
gnu: krunner: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (krunner): Update to 5.27.0.
  [arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven 3a1e972d50
gnu: kpeople: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kpeople): Update to 5.27.0.
  [arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven 33fa4658bd
gnu: kparts: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kparts): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 59cb98e135
gnu: knotifyconfig: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (knotifyconfig): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 7064ad3fca
gnu: knewstuff: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (knewstuff): Update to 5.27.0.
  [arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven ed3634e756
gnu: kio: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kio): Update to 5.27.0.
  [arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven 89d522a360
gnu: kinit: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kinit): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven c8ddc56e6c
gnu: kiconthemes: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kiconthemes): Update to 5.27.0.
  [arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven 2b677becbd
gnu: kglobalaccel: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kglobalaccel): Update to 5.27.0.
  [inputs]: Add kservice.
2016-10-29 23:51:43 +02:00
David Craven 25ebad65bf
gnu: kemoticons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kemoticons): Update to 5.27.0.
  [arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven aa072198c6
gnu: kdesu: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kdesu): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 9caef00bd1
gnu: kdesignerplugin: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kdesignerplugin): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 8e963d123c
gnu: kded: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kded): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 46e1ac0be8
gnu: kdeclarative: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kdeclarative): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 986d0eae65
gnu: kconfigwidgets: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kconfigwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 8ed8a9f53a
gnu: kcmutils: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kcmutils): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven b58e9bea2e
gnu: kbookmarks: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kbookmarks): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 4902494f6d
gnu: kactivities-stats: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kactivities-stats): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 04fb93e0e3
gnu: kactivities: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kactivities): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 442f2beae0
gnu: baloo: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (baloo): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven f7c2026fea
gnu: kunitconversion: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kunitconversion): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 84164f7ff8
gnu: kpty: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kpty): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 0e6c305748
gnu: kpackage: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 7507399846
gnu: knotifications: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (knotifications): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 4a9f3bf33b
gnu: kjobwidgets: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kjobwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 2d64fdb157
gnu: kimageformats: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kimageformats): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 3f34662b12
gnu: kfilemetadata: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kfilemetadata): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven f5dae6aec1
gnu: kdoctools: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kdoctools): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 075eeb355b
gnu: kcrash: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kcrash): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 17b5144a18
gnu: kcompletion: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kcompletion): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 62dee732f4
gnu: kauth: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kauth): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 01fc411d96
gnu: threadweaver: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (threadweaver): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 71b37f7ab6
gnu: sonnet: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (sonnet): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 6ad3befef2
gnu: solid: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (solid): Update to 5.27.0.
  [native-inputs]: Add flex-2.6.1.
2016-10-29 23:51:43 +02:00
David Craven beb21382d3
gnu: oxygen-icons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (oxygen-icons): Update to 5.27.0.
  [native-inputs]: Add fdupes.
2016-10-29 23:51:43 +02:00
David Craven c3fefc81ce
gnu: networkmanager-qt: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (networkmanager-qt): Update to 5.27.0
  and fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 48e789daa8
gnu: modemmanager-qt: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (modemmanager-qt): Update to 5.27.0
  and fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 48311df949
gnu: kwindowsystem: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 5a3f070931
gnu: kwidgetsaddons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kwidgetsaddons): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 3dfcaf33c8
gnu: kwayland: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kwayland): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven a7ec016cd5
gnu: kplotting: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kplotting): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 701d7a9b50
gnu: kitemviews: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kitemviews): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 110e4bea7a
gnu: kitemmodels: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kitemmodels): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven bdf84c9e2f
gnu: kidletime: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kidletime): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven e751556a14
gnu: ki18n: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (ki18n): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven ee6cebf6a9
gnu: kguiaddons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kguiaddons): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven ce45f9ef7b
gnu: kdnssd: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kdnssd): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven e361ff6a2e
gnu: kdbusaddons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kdbusaddons): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven b69b81ca2e
gnu: kcoreaddons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kcoreaddons): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven a6fec16590
gnu: kconfig: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kconfig): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 78fc358f3e
gnu: kcodecs: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kcodecs): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven ea95b701dc
gnu: karchive: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (karchive): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 8fea1a2378
gnu: kapidox: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (kapidox): Update to 5.27.0 and fix
  indentation.
2016-10-29 23:51:43 +02:00
David Craven 02dc8847c8
gnu: breeze-icons: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (breeze-icons): Update to 5.27.0.
  [native-inputs]: Add fduptes and libxml2.
  [arguments]: Disable tests.
2016-10-29 23:51:43 +02:00
David Craven bfa96eba56
gnu: bluez-qt: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (bluez-qt): Update to 5.27.0 and
  fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 5eb1b33b6b
gnu: attica: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (attica): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven 84dee85291
gnu: phonon: Fix indentation.
* gnu/packages/kde-frameworks.scm (phonon): Fix indentation.
2016-10-29 23:51:43 +02:00
David Craven bd0fc238f8
gnu: kpmcore: Fix indentation.
* gnu/packages/kde-frameworks.scm (kpmcore): Fix indentation.
2016-10-29 23:51:43 +02:00
David Craven 443a60aaae
gnu: gpgmepp: Update to 16.08.2.
* gnu/packages/kde-frameworks (gpgmepp): Update to 16.08.2.
2016-10-29 23:51:43 +02:00
David Craven 1c484e980f
gnu: extra-cmake-modules: Update to 5.27.0.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules): Update to
  5.27.0.
2016-10-29 23:51:43 +02:00
David Craven b68bf48af9
gnu: Add flex-2.6.1.
* gnu/packages/flex.scm (flex-2.6.1): New variable.
2016-10-29 23:51:43 +02:00
Alex Vong ee5fb7ee50
gnu: Add python2-rpython.
* gnu/packages/python.scm (python2-rpython): New variable.
2016-10-29 23:49:05 +02:00
Efraim Flashner 8f210c0e0e
gnu: ccache: Update to 3.3.3.
* gnu/packages/ccache.scm (ccache): Update to 3.3.3.
2016-10-30 00:05:26 +03:00
Efraim Flashner 7dd55dfeca
gnu: python-waf: Update to 1.9.5.
* gnu/packages/python.scm (python-waf): Update to 1.9.5.
[arguments]: Shorten custom build phase.
[source]: Use http.
[home-page]: Use http.
2016-10-30 00:05:13 +03:00
Efraim Flashner 603d55de4a
gnu: ffmpeg: Update to 3.2.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.
2016-10-29 22:16:44 +03:00
Efraim Flashner 0b37c4cda7
gnu: vapoursynth: Update to 35.
* gnu/packages/video.scm (vapoursynth): Update to 35.
2016-10-29 22:16:44 +03:00
Efraim Flashner 812de5bf1e
gnu: offlineimap: Update to 7.0.9.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.9.
2016-10-29 22:16:43 +03:00
Efraim Flashner 4d73cb5441
gnu: chess: Update to 6.2.4.
* gnu/packages/games.scm (chess): Update to 6.2.4.
[home-page]: Use https.
2016-10-29 22:16:42 +03:00
Marius Bakke a7e75125c8
gnu: vim: Update to 8.0.0054.
* gnu/packages/vim.scm (vim): Update to 8.0.0054.
2016-10-29 20:04:57 +01:00
Tobias Geerinckx-Rice dadf6622e9
gnu: borg: Update to 1.0.8.
* gnu/packages/backup.scm (borg): Update to 1.0.8.
2016-10-29 14:24:51 +02:00
Tobias Geerinckx-Rice 58c4f11e43
gnu: Add radeontop.
* gnu/packages/linux.scm (radeontop): New variable.
2016-10-29 14:19:01 +02:00
Mark H Weaver b8df914f37
gnu: linux-libre: Update to 4.8.5.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.5.
2016-10-28 20:11:20 -04:00
Mark H Weaver a56b3229f4
gnu: linux-libre@4.4: Update to 4.4.28.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.28.
2016-10-28 20:09:02 -04:00
Eric Bavier fba78d18c2
gnu: mumps: Upgrade to 5.0.2.
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
2016-10-28 15:53:32 -05:00
Marius Bakke a9afb956b3
gnu: vim: Update to 8.0.0051.
* gnu/packages/vim.scm (vim): Update to 8.0.0051.
[source]: Change to github release archive.
2016-10-28 20:55:09 +01:00
Leo Famulari 0df955401f
Merge branch 'master' into core-updates 2016-10-28 13:59:32 -04:00
Leo Famulari 044ac8d294
gnu: python-twobitreader: Update to 3.1.4.
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader):
Update to 3.1.4.
2016-10-28 13:59:11 -04:00
Leo Famulari 900fb8d005
gnu: python-twobitreader: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-twobitreader to fail.

* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader)[arguments]: Disable the tests.
2016-10-28 13:59:11 -04:00
Roel Janssen ed8bc028f7
gnu: Add emacs-org-trello.
* gnu/packages/emacs.scm (emacs-org-trello): New variable.
2016-10-28 19:50:32 +02:00
Leo Famulari a6447e7fb6
Merge branch 'master' into core-updates 2016-10-28 13:40:17 -04:00
Leo Famulari e359b31a60
gnu: python-wsgiproxy2: Disable the test suite.
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2)[arguments]:
Disable the tests.
2016-10-28 13:39:38 -04:00
Leo Famulari 67fd4a12cb
gnu: python-beautifulsoup4: Update to 4.5.1.
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
Update to 4.5.1.
2016-10-28 13:39:38 -04:00
Leo Famulari 5f37f0b66e
gnu: python-beautifulsoup4: Run the test suite.
* gnu/packages/python.scm (python-beautifulsoup4)[arguments]: Add field
run python-2 -> python-3 conversion script and test suite.
(python2-beautifulsoup4)[arguments]: Specify use of python-2.
2016-10-28 13:39:37 -04:00
Leo Famulari 92c3ef2cf3
gnu: python-feedparser: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-feedparser to fail.

* gnu/packages/python.scm (python-feedparser, python2-feedparser)[arguments]:
Disable the tests.
2016-10-28 13:39:37 -04:00
Leo Famulari 95bff4f697
gnu: libwebp: Fix CVE-2016-9085.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libwebp)[source]: Use it.
2016-10-28 13:39:37 -04:00
Leo Famulari b2ed5ca7aa
gnu: libwebp: Update to 0.5.1.
* gnu/packages/image.scm (libwebp): Update to 0.5.1.
2016-10-28 13:39:33 -04:00
Roel Janssen 36e5d10387
gnu: Add emacs-request.
* gnu/packages/emacs.scm (emacs-request): New variable.
2016-10-28 19:29:35 +02:00
Thomas Danckaert fc381a3325
gnu: Add qwt.
* gnu/packages/qt.scm (qwt): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-28 14:47:36 +01:00
宋文武 aa98b3b273
gnu: gxmessage: Don't install 'icon-theme.cache'.
* gnu/packages/gxmessage.scm (gxmessage)[arguments]: Add
'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.
2016-10-28 21:04:11 +08:00
Mark H Weaver 3d82676919
Merge branch 'master' into core-updates 2016-10-27 20:21:26 -04:00
Efraim Flashner f9a65318dd
gnu: python-parse: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-parse)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 23:29:56 +03:00
Efraim Flashner aa6c09ed71
gnu: python-parse: Fix failing test.
* gnu/packages/python.scm (python-parse)[origin]: Add patch.
* gnu/packages/patches/python-parse-too-many-fields.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-10-27 23:28:07 +03:00
Efraim Flashner d18c69aa2a
gnu: python-pytest-django: Add missing test input.
* gnu/packages/django.scm (python-pytest-django)[native-inputs]: Add
python-django.
2016-10-27 22:27:31 +03:00
Efraim Flashner fa7cd33378
gnu: python-django-filter: Add inputs for tests.
* gnu/packages/django.scm (python-django-filter)[native-inputs]: Add
python-django, python-mock.
2016-10-27 22:18:30 +03:00
Efraim Flashner 13c4d8746b
gnu: python-wtforms: Skip optional tests.
* gnu/packages/python.scm (python-wtforms)[arguments]: Add a phase
preventing tests from failing when optional tests aren't run.
2016-10-27 22:13:22 +03:00
Efraim Flashner b6e0804953
gnu: lightning: Add missing input.
* gnu/packages/assembly.scm (lightning)[native-inputs]: Add zlib.
2016-10-27 21:13:05 +03:00
Roel Janssen 7500e42b3e
gnu: Add r-mutationalpatterns.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
2016-10-27 20:07:05 +02:00
Efraim Flashner 377bfbc1f8
gnu: gxmessage: Add missing input.
* gnu/packages/gxmessage.scm (gxmessage)[native-inputs]: Add gtk+3-bin.
2016-10-27 21:03:08 +03:00
Efraim Flashner 327be74720
gnu: jasper: Updat eto 1.900.16.
* gnu/packages/image.scm (japer): Update to 1.900.16.
2016-10-27 20:14:17 +03:00
Kei Kebreau 233fbb6102
gnu: windowmaker: Add support for more image formats.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng,
and libtiff.
2016-10-27 10:51:05 -04:00
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix
* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27 16:37:24 +02:00
Marius Bakke 6178274d19
gnu: python-urllib3: Update to 1.18.1.
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
2016-10-27 14:03:07 +01:00
Ludovic Courtès 631fda7e90
gnu: Add mdadm-static.
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27 13:48:52 +02:00
Efraim Flashner 7d876afdd8
gnu: libmikmod: Update to 3.3.10.
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27 12:23:04 +03:00
Efraim Flashner 355d8e873b
gnu: sdl2: Update to 2.0.5.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27 12:23:04 +03:00
Efraim Flashner 5d5790ce44
gnu: Use 'https' for libsdl urls.
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
2016-10-27 12:23:03 +03:00
Tobias Geerinckx-Rice 483b7ce7ae
gnu: mcelog: Update to 144.
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27 11:03:34 +02:00
Tobias Geerinckx-Rice 6270769dc2
gnu: btrfs-progs: Update to 4.8.2.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 11:03:34 +02:00
Mike Gerwitz cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'.  Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:54 +01:00
Mike Gerwitz a6b256affc
gnu: Add pcsc-lite.
* gnu/packages/security-token.scm (pcsc-lite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:52 +01:00
ng0 8888fe826c
gnu: Add dbacl.
* gnu/packages/textutils.scm (dbacl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27 11:42:39 +03:00
Efraim Flashner 5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax.
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 11:42:38 +03:00
Efraim Flashner e68168eb87
gnu: valgrind: Update to 3.12.0.
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27 11:42:29 +03:00
Hartmut Goebel 49a531f545
gnu: python-pathlib2: Add comment.
As suggested by Efraim Flashner.

* gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-27 10:09:10 +02:00
Leo Famulari f02fb6dd6b
gnu: btrfs-progs: Update to 4.8.2.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 00:43:37 -04:00
Leo Famulari 9045c086df
gnu: blender: Update to 2.78a.
* gnu/packages/graphics.scm (blender): Update to 2.78a.
2016-10-27 00:30:47 -04:00
Leo Famulari fad8bf977d
gnu: python-s3transfer: Run the tests.
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer)[arguments]:
Use python-nose to run the tests.
[native-inputs]: Add python-mock and python-nose.
2016-10-26 21:41:28 -04:00
Leo Famulari 522fc32ebd
gnu: shotwell: Update to 0.25.0.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
2016-10-26 20:10:05 -04:00
Leo Famulari 30b1267830
gnu: vdirsyncer: Update to 0.14.0.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-26 19:56:15 -04:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Leo Famulari a19da40630
gnu: perl-www-curl: Fix build failure.
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
2016-10-26 18:44:16 -04:00
ng0 5d73e30000
gnu: Add lci.
* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 20:39:27 +03:00
Christopher Allan Webber 8caeb11772
gnu: Add autossh.
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26 11:22:17 -05:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1.
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2.
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15.
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2.
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4.
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0.
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0.
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2.
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7.
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1.
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus 2ffcd6607b
gnu: r-curl: Update to 2.2.
* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26 16:23:26 +02:00
Ricardo Wurmus a46cc723ff
gnu: r-seqinr: Update to 3.3-3.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26 16:23:26 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0.
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus c70271ec48
gnu: bioperl-minimal: Update to 1.7.0.
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26 16:23:24 +02:00
Marius Bakke 39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.

This is a follow-up to 47a04fca99.

* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
2016-10-26 15:03:42 +01:00
ng0 b2a2232c33
gnu: python-certifi: Update to 2016.8.31.
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 14:31:16 +03:00
Marius Bakke 07b1fb8675
gnu: security-token: Use 'license:' prefix.
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
2016-10-26 11:00:58 +01:00
Marius Bakke f9c339603d
gnu: yubico.scm: Rename to security-token.scm.
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26 10:45:49 +01:00
Marius Bakke 7a6213cbd7
gnu: offlineimap: Install documentation.
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
2016-10-26 10:45:49 +01:00
Marius Bakke d2a9b531fb
gnu: notmuch: Update to 0.23.1.
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
2016-10-26 10:45:49 +01:00
Efraim Flashner 8f5f6c922f
gnu: vlc: Add x265 support.
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
2016-10-26 12:19:19 +03:00
Efraim Flashner e3cb00d210
gnu: gst-plugins-bad: Add x265 support.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
2016-10-26 12:19:18 +03:00
Efraim Flashner d505801a06
gnu: ffmpeg: Add x265 support.
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
2016-10-26 12:19:18 +03:00
Efraim Flashner 7bc7ffc243
gnu: Add x265.
* gnu/packages/video.scm (x265): New variable.
2016-10-26 12:19:18 +03:00
ng0 1df790d50d
gnu: Add psyclpc.
* gnu/packages/psyc.scm (psyclpc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 11:29:35 +03:00
Ludovic Courtès 19262a718e
gnu: opensmtpd: Fix 'license' field.
* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
2016-10-26 10:19:18 +02:00
Ricardo Wurmus 59198f8fff
gnu: r-genomationdata: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus e357bec836
gnu: r-bamsignals: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus 53ca52f013
gnu: r-rhtslib: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus da22da862b
gnu: r-zlibbioc: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 809251e164
gnu: r-motifrg: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 51c3c4900f
gnu: r-genomation: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus acf6f7e0c3
gnu: r-impute: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus 3d74c04451
gnu: r-bsgenome: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus 30ec4de738
gnu: r-topgo: Update to 2.26.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus 3587b464fc
gnu: r-graph: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus d1b1587cad
gnu: r-go-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus 47d39b6e7a
gnu: r-biostrings: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus 89559a124e
gnu: r-biocparallel: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus 9405333186
gnu: r-biomart: Update to 2.30.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus e45dc05781
gnu: r-annotationdbi: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus 464870caf7
gnu: r-biobase: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus 92a740afac
gnu: r-genomicranges: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus 1d048589ca
gnu: r-xvector: Update to 0.14.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 753bc32b8e
gnu: r-limma: Update to 3.30.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 37d96f1dde
gnu: r-variantannotation: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 5e48005fa9
gnu: r-edger: Update to 3.16.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus dece310a25
gnu: r-genomeinfodb: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus 7f354dafb1
gnu: r-iranges: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus 22c5d736af
gnu: r-dnacopy: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus 5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus c9b5046a18
gnu: r-grohmm: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus 1265d3877b
gnu: r-systempiper: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus b87b41a74d
gnu: r-shortread: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus ae6899b683
gnu: r-gostats: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus 816599c1e7
gnu: r-category: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus 558d02c361
gnu: r-gseabase: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus 700c780dcf
gnu: r-rbgl: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus 55cd914c3d
gnu: r-annotationforge: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus e1db8dd813
gnu: r-deseq2: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 1e66e71921
gnu: r-genefilter: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 9beba74f66
gnu: r-annotate: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth.
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-26 09:28:07 +02:00
Leo Famulari 6c18c4f603
gnu: elfutils: Update to 0.167.
* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25 22:11:59 -04:00
Leo Famulari 3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25 16:33:13 -04:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries.
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24 22:53:18 -04:00
Mark H Weaver c4a667bfa5
gnu: Add missing module import to (gnu packages gl).
This is a followup to commit f1267c872f.

* gnu/packages/gl.scm: Import (gnu packages).
2016-10-24 22:45:38 -04:00
Mark H Weaver f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS.
* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
2016-10-24 22:28:32 -04:00
Leo Famulari 19a65e7c8c
gnu: perl-eval-closure: Update to 0.14.
* gnu/packages/perl.scm (perl-eval-closure): Update to 0.14.
2016-10-24 17:29:25 -04:00
Thomas Danckaert d91025e3d0
gnu: Add coda.
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2.
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
Amirouche 3b5783fcd9
gnu: Add guile-bytestructures
* gnu/packages/guile.scm (guile-bytestructures): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:51:52 +02:00
Leo Famulari 4691428059
gnu: twolame: Make the test suite compatible with Perl 5.24.
* gnu/packages/audio.scm (twolame)[source]: Add snippet to fix test.
2016-10-24 16:19:25 -04:00
Efraim Flashner 405be8dceb
gnu: efl: Update to 1.18.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24 22:01:00 +03:00
Kei Kebreau c201b28bfa
gnu: red-eclipse: Update to 1.5.6.
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
2016-10-24 13:25:39 -04:00
ng0 9c798f9036
gnu: Add whois.
* gnu/packages/networking.scm (whois): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-24 17:40:53 +01:00
宋文武 bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
2016-10-24 19:19:34 +08:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859.
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
2016-10-23 18:08:17 -04:00
Kei Kebreau 8e3017cc65
gnu: windowmaker: Update to 0.95.7.
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
2016-10-23 17:52:28 -04:00
Arun Isaac 0f6b6cb996
gnu: gajim: Update to 0.16.6.
* gnu/packages/messaging.scm (gajim): Update to 0.16.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
Arun Isaac d6465efaa9
gnu: gajim: License is "version 3 only".
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
ng0 2dfa90721d
gnu: weechat: Update to 1.6.
* gnu/packages/irc.scm (weechat): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:10:22 -04:00
Leo Famulari ef73acd30d
gnu: diffoscope: Disable failing test.
* gnu/packages/package-management.scm (diffoscope)[arguments]: Add
'disable-failing-test' phase.
2016-10-23 17:05:09 -04:00
Leo Famulari 1bafad5661
gnu: audit: Use GnuTLS instead of OpenSSL.
* gnu/packages/admin.scm (audit)[inputs]: Replace openssl with gnutls.
2016-10-23 16:38:21 -04:00
Mark H Weaver 93cb98d481
gnu: icu4c: On MIPS, pass --with-data-packaging=archive to configure.
* gnu/packages/icu4c.scm (icu4c)[arguments]: On MIPS, pass
"--with-data-packaging=archive" to configure.
2016-10-23 14:18:26 -04:00
Mark H Weaver ca0635b4ba
Merge branch 'master' into core-updates 2016-10-23 14:16:39 -04:00
Danny Milosavljevic 903276d066
gnu: Add python-flask-sqlalchemy.
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
2016-10-23 19:41:11 +02:00
Danny Milosavljevic 31288222d4
gnu: Add python-flask-basicauth.
* gnu/packages/python.scm (python-flask-basicauth): New variable.
2016-10-23 19:41:10 +02:00
Danny Milosavljevic 999d964d64
gnu: Add python-flask-restful.
* gnu/packages/python.scm (python-flask-restful): New variable.
2016-10-23 19:31:39 +02:00
Danny Milosavljevic 0990edfecb
gnu: Add python-aniso8601.
* gnu/packages/python.scm (python-aniso8601): New variable.
2016-10-23 19:31:39 +02:00
Rene Saavedra 04ce840a82
gnu: Add bluefish.
* gnu/packages/gnome.scm (bluefish): New variable.
2016-10-23 19:26:30 +02:00
Tobias Geerinckx-Rice 373e765ec3
gnu: openconnect: Update to 7.07.
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
2016-10-23 16:33:04 +02:00
Tobias Geerinckx-Rice bdc74f07c3
gnu: weex: Use ‘modify-phases’.
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
2016-10-23 16:33:04 +02:00
Ricardo Wurmus 5f5b57681c
gnu: Add guitarix-lv2.
* gnu/packages/audio.scm (guitarix-lv2): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 84d53724ba
gnu: Add mod-utilities.
* gnu/packages/music.scm (mod-utilities): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 3d4b1bb9a1
gnu: Add jalv-select.
* gnu/packages/music.scm (jalv-select): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus c2c9e74891
gnu: Add mod-host.
* gnu/packages/music.scm (mod-host): New variable.
2016-10-23 15:47:35 +02:00
Efraim Flashner 875dc49b00
gnu: jasper: Update to 1.900.13.
* gnu/packages/image.scm (jasper): Update to 1.900.13.
[arguments]: Build with -std=c99 support.
2016-10-23 16:32:04 +03:00
ng0 5cb7974109
gnu: Add libpsyc.
* gnu/packages/psyc.scm (libpsyc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
ng0 3a14b2bcf6
gnu: Add perl-net-psyc.
* gnu/packages/psyc.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
Ricardo Wurmus 860eda621b
gnu: vmpk: Remove package.
The vmpk package has been broken for a while and attempts to fix it have
failed.  The package "jack-keyboard" offers similar features.

* gnu/packages/music.scm (vmpk): Remove variable.
2016-10-23 15:06:36 +02:00
Ricardo Wurmus 1a0633e79b
gnu: Add supertuxkart.
* gnu/packages/games.scm (supertuxkart): New variable.
2016-10-23 15:05:19 +02:00
Efraim Flashner 9ba88890f7
gnu: gambit-c: Update to 4.8.5.
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.5.
[source]: Update source tarball name.
2016-10-23 14:37:36 +03:00
Efraim Flashner 27668c79de
gnu: gambit-c: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (gambit-c)[arguments]: Use 'modify-phases'
syntax.
2016-10-23 14:37:36 +03:00
Efraim Flashner 71dcdaf31f
gnu: gambit-c: Update to 4.7.9.
* gnu/packages/scheme.scm (gambit-c): Update to 4.7.9.
2016-10-23 14:37:36 +03:00
Efraim Flashner fb685df8f8
gnu: bigloo: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (bigloo)[arguments]: Use 'modify-phases' syntax.
2016-10-23 14:37:36 +03:00
Efraim Flashner 04014de6f5
gnu: hop: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (hop)[arguments]: Use 'modify-phases' syntax.
2016-10-23 14:37:35 +03:00
Efraim Flashner eccd1d24c9
gnu: hop: Update to 2.5.1.
* gnu/packages/scheme.scm (hop): Update to 2.5.1.
[source]: Remove patch.
* gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-23 14:37:28 +03:00
Leo Famulari 5ed7f28da5
gnu: mpg321: Update to 0.3.2.
* gnu/packages/mp3.scm (mpg321): Update to 0.3.2.
2016-10-23 05:01:02 -04:00
Leo Famulari d78b652c16
gnu: mpg123: Update to 1.23.8.
* gnu/packages/mp3.scm (mpg123): Update to 1.23.8.
2016-10-23 04:55:26 -04:00
Efraim Flashner 844f4f6e62
gnu: beast: Disable parallel-build.
* gnu/packages/music.scm (beast)[arguments]: Disable parallel builds to
prevent a race condition.
2016-10-23 07:47:03 +03:00
Efraim Flashner d661894159
gnu: infamous-plugins: Remove compiler optimizations.
* gnu/packages/audio.scm (infamous-plugins)[arguments]: Add phase
removing built-in compiler optimizations in the source code.
2016-10-23 07:47:03 +03:00
Efraim Flashner 7ca6830482
gnu: python2-validictory: Add missing input.
* gnu/packages/python.scm (python2-validictory)[native-inputs]: Add
python2-setuptools.
(python-validictory)[properties]: New field.
2016-10-23 07:47:03 +03:00
Efraim Flashner ff1e2b59bf
gnu: ffmpeg: Update to 3.1.5.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.5.
2016-10-23 07:47:03 +03:00
Efraim Flashner 04ed5444fe
gnu: mutt: Update to 1.7.1.
* gnu/packages/mail.scm (mutt): Update to 1.7.1.
2016-10-23 07:47:03 +03:00
ng0 ad6198a5f9
gnu: Add vim-full.
* gnu/packages/vim.scm (vim-full): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 07:47:02 +03:00
Efraim Flashner 84a79b8c42
gnu: aria2: Update to 1.28.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.28.0.
2016-10-23 07:46:49 +03:00
Mark H Weaver 35680748a6
gnu: linux-libre: Update to 4.8.4.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.4.
2016-10-23 00:21:20 -04:00
Mark H Weaver 62cf3ae09b
gnu: linux-libre@4.4: Update to 4.4.27.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.27.
2016-10-23 00:18:42 -04:00
John Darrington 0881b616f4
gnu: guile-ncurses: Update to version 2.0.
* gnu/packages/guile.scm (guile-ncurses): Update version to 2.0.
2016-10-22 17:24:39 +02:00
Alex Sassmannshausen ed53a07145
gnu: perl-test-mockobject: Update to 1.20150527.
* gnu/packages/perl.scm (perl-test-mockobject): Update to 1.20150527.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:15 -04:00
Nicolas Goaziou 3ae48df120
gnu: wireshark: Update to 2.2.1.
* gnu/packages/networking.scm (wireshark): Update to 2.2.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:15 -04:00
Nicolas Goaziou a4c7f40cec
gnu: giac-xcas: Update to 1.2.2-95.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-95.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:10 -04:00
Mark H Weaver a861665b75
gnu: linux-libre@4.1: Add fix for CVE-2016-5195.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-4.1): Add patch.
2016-10-22 00:30:38 -04:00
Mark H Weaver 64de7d1ceb
gnu: make-linux-libre: Add #:patches keyword argument.
* gnu/packages/linux.scm (make-linux-libre): Add 'patches' keyword
argument.
2016-10-22 00:22:31 -04:00
Leo Famulari f08add0c5a
gnu: go-1.7: Skip test that fails due to time zone name change.
* gnu/packages/golang.scm (go-1.7)[arguments]: Skip test "TestLoadFixed" in
'prebuild' phase.
2016-10-21 19:13:01 -04:00
Leo Famulari 4b0bac4b3e
gnu: go-1.4: Skip test that fails due to time zone name change.
* gnu/packages/golang.scm (go-1.4)[arguments]: Skip test "TestLoadFixed" in
'prebuild' phase.
2016-10-21 19:13:01 -04:00
Leo Famulari 04a95a4fd6
gnu: go-1.4: Disable cgo.
* gnu/packages/golang.scm (go-1.4)[arguments]: Set "CGO_ENABLED=0" while
building.
(go-1.7)[arguments]: Keep "CGO_ENABLED=1".
2016-10-21 19:13:01 -04:00
Leo Famulari 57147c5d34
gnu: go-1.7: Update to 1.7.3.
* gnu/packages/golang.scm (go-1.7): Update to 1.7.3.
2016-10-21 19:03:21 -04:00
Leo Famulari bc8aa24b15
gnu: mpv: Update to 0.21.0.
* gnu/packages/video.scm (mpv): Update to 0.21.0.
2016-10-21 15:56:43 -04:00
Christopher Allan Webber 7d2ee59b4a
gnu: slim: Fix line numbers in slim-login.patch.
This was causing build failures.

* gnu/packages/patches/slim-login.patch: Fix line numbers.
2016-10-21 12:51:33 -05:00
Tobias Geerinckx-Rice 666619d088
gnu: lrzip: Update to 0.631.
* gnu/packages/compression.scm (lrzip): Update to 0.631.
2016-10-21 05:14:32 +02:00
Eric Bavier 17d50dfdbb
gnu: slim: Display login message.
* gnu/packages/patches/slim-login.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
2016-10-20 16:47:20 -05:00
Eric Bavier 0b71c15c80
gnu: slim: Do not reset session after failed login.
* gnu/packages/patches/slim-reset.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
2016-10-20 16:47:19 -05:00
Leo Famulari 5d5cdb7ca4
gnu: linux-libre-4.4: Update to 4.4.26.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.26.
2016-10-20 17:42:49 -04:00
Leo Famulari 88576735bf
gnu: linux-libre: Update to 4.8.3.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.3.
2016-10-20 17:42:49 -04:00
Roel Janssen d6e5de1ed2
gnu: Add emacs-d-mode.
* gnu/packages/emacs.scm (emacs-d-mode): New variable.
2016-10-20 22:26:41 +02:00
ng0 2116bfb367
gnu: network-manager-applet: Update to 1.4.2.
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-20 22:20:47 +02:00
Ludovic Courtès 29d2f451a6
gnu-maintenance: GNOME updater honors 'upstream-name' package property.
* guix/gnu-maintenance.scm (latest-gnome-release)[upstream-name]: New
variable.  Use it as the first argument to 'latest-ftp-release' and when
constructing #:directory.
* gnu/packages/gnome.scm (gconf)[properties]: New field.
(network-manager)[properties]: New field.
2016-10-20 22:18:59 +02:00
ng0 0d871c3876
gnu: network-manager: Update to 1.4.2.
* gnu/packages/gnome.scm (network-manager): Update to 1.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-20 21:57:11 +02:00
Ludovic Courtès 6205e6a0ce
gnu: libgweather: Update to 3.20.3.
* gnu/packages/gnome.scm (libgweather): Update to 3.20.3.
2016-10-20 21:22:46 +02:00
Ludovic Courtès 8b8dfa7f56
gnu: libgweather: Adjust to new timezone name.
* gnu/packages/gnome.scm (libgweather)[arguments]: In 'pre-check' phase,
update "Asia/Rangoon" timezone name.
2016-10-20 21:21:28 +02:00
Ludovic Courtès 7f8393f3eb
gnu: python-mailmanclient: Fix typo.
* gnu/packages/mail.scm (python-mailmanclient)[properties]: Fix typo.
2016-10-20 15:44:48 +02:00
ng0 6d3dda4ff5
gnu: Add python-mailmanclient.
* gnu/packages/mail.scm (python-mailmanclient): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-20 11:47:12 +03:00
Hartmut Goebel 162e42d8c0
gnu: Add python-validictory and python2-validictory.
* gnu/packages/python.scm (python-validictory, python2-validictory):
  New variables.
2016-10-20 10:27:22 +02:00
Hartmut Goebel b7703c8131
gnu: Add python2-pathlib2.
Adding only the Python 2 variant, since for Python 3 our minimum version
is 3.4 which already includes this package as part of the standard library.

gnu/packages/python.scm (python2-pathlib2): New variable.
2016-10-20 10:09:59 +02:00
Hartmut Goebel 8ab59181a4
gnu: Add python-setproctitle and python2-setproctitle.
* gnu/packages/python.scm (python-setproctitle, python2-setproctitle):
  New variables.
2016-10-20 09:55:19 +02:00
Hartmut Goebel 9518fde1a1
gnu: Add chromaprint.
* gnu/packages/mp3.scm (chromaprint): New variable.
2016-10-20 09:55:19 +02:00
Roel Janssen 4644644ace
gnu: Add r-bioccheck.
* gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
2016-10-20 09:53:02 +02:00
Leo Famulari c645cef7da
gnu: openssh: Fix CVE-2016-8858.
* gnu/packages/patches/openssh-memory-exhaustion.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2016-10-19 18:02:39 -04:00
Rene Saavedra 3ad7dce1d9
gnu: Add gucharmap.
* gnu/packages/gnome.scm (gucharmap): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-19 23:20:19 +02:00
Carlos Sánchez de La Lama 80c9164fd7
gnu: %static-inputs: Use bash from PATH in bootstrap tar.
gnu/packages/make-bootstrap.scm (%static-inputs): Use bash from PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-19 23:20:19 +02:00
Leo Famulari c21b1a1fbb
gnu: borg: Install more documentation.
* gnu/packages/backup.scm (borg)[arguments]: Install more documentation in
'install-doc' phase. Use (srfi srfi-26).
2016-10-19 16:00:26 -04:00
Leo Famulari 7ffa5d4a2d
gnu: python-file: Work around "double encoding" bug in file@5.28.
* gnu/packages/patches/python-file-double-encoding-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-file)[source]: Use it.
(python2-file)[source]: Use the source of FILE directly, without the
patch.
2016-10-19 14:36:51 -04:00
Leo Famulari 00bf74be05
gnu: python-file: Don't create a compressed egg.
* gnu/packages/python.scm (python-file, python2-file)[arguments]: Pass
"--single-version-externally-managed" "--root=/" to #:configure-flags.
2016-10-19 14:36:48 -04:00
Tobias Geerinckx-Rice b332c823b7
gnu: gparted: Update to 0.27.0.
* gnu/packages/disk.scm (gparted): Update to 0.27.0.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice f5d3773268
gnu: ncftp: Use ‘modify-phases’.
* gnu/packages/ftp.scm (ncftp): Use the ‘modify-phases’ syntax.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice c17b5986f2
gnu: mcelog: Update to 143.
* gnu/packages/linux.scm (mcelog): Update to 143.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice 5e270e8e8f
gnu: lftp: Update to 4.7.3.
* gnu/packages/ftp.scm (lftp): Update to 4.7.3.
[source]: Use HTTPS. Remove patch.
[arguments]: Add ‘disable-impure-tests’ phase. Add #:configure-flags with
explicit location of readline headers.
[home-page]: Use HTTPS.
* gnu/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-19 19:34:17 +02:00
Leo Famulari d5ccf71ec6
gnu: awscli: Update to 1.11.5.
* gnu/packages/python.scm (awscli): Update to 1.11.5.
[source]: Use pypi-uri.
[inputs]: Add python-s3transfer.
2016-10-19 13:12:48 -04:00
Leo Famulari 94cffc6386
gnu: Add python-s3transfer.
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer): New
variable.
2016-10-19 13:12:48 -04:00
Leo Famulari e09f952d9f
gnu: python-botocore: Update to 1.4.62.
* gnu/packages/python.scm (python-botocore, python2-botocore): Update to 1.4.62.
2016-10-19 13:12:47 -04:00
Leo Famulari ecd68c53a6
gnu: python-rsa: Update to 3.4.2.
* gnu/packages/python.scm (python-rsa, python2-rsa): Update to 3.4.2.
2016-10-19 13:12:47 -04:00
Leo Famulari def6213f65
gnu: Add libseccomp.
* gnu/packages/linux.scm (libseccomp): New variable.
2016-10-19 13:01:31 -04:00
Marius Bakke 6de9dfce80
gnu: xapian: Update to 1.4.0.
* gnu/packages/search.scm (xapian): Update to 1.4.0.
[source]: Use https URL.
[home-page]: Use https URL.
[arguments]: Remove 'patch-remotetcp-harness' phase. Replace 'check'
phase with a list of custom test targets.
2016-10-19 17:00:51 +01:00
Marius Bakke 16a23d4ad2
gnu: xapian: Use 'modify-phases' syntax.
* gnu/packages/search.scm (xapian)[arguments]: Use 'modify-phases'. Fix
'/bin/sh' substitution to use (which "sh") instead of (which "bash").
2016-10-19 17:00:43 +01:00
Marius Bakke 6cf27c89a5
gnu: notmuch: Enable tests.
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mail.scm (notmuch)[source]: Use patch.
[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to
fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch
test shebangs and set environment.
[native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach,
gnupg, man, perl and which.
2016-10-19 17:00:37 +01:00
Marius Bakke 540d6cc711
gnu: notmuch: Update to 0.23.
* gnu/packages/mail.scm (notmuch): Update to 0.23.
[home-page]: Use https URL.
(python-notmuch)[version]: Inherit from notmuch.
[home-page]: Ditto.
2016-10-19 17:00:24 +01:00
Mark H Weaver b09e0cd154
gnu: chez-scheme: Remove use of 'ghostscript-gs' wrapper.
This is a followup to commit d2478b4cdd.

* gnu/packages/chez.scm (chez-scheme)[native-inputs]: Replace
'ghostscript-gs' with 'ghostscript'.
2016-10-19 11:26:51 -04:00
Mark H Weaver d2478b4cdd
Merge branch 'master' into core-updates 2016-10-19 10:54:36 -04:00
ng0 152ffe7cb6
gnu: Add opensmtpd-extras.
* gnu/packages/mail.scm (opensmtpd-extras): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:37:16 +03:00
ng0 8b53366c63
gnu: Add opensmtpd.
* gnu/packages/mail.scm (opensmtpd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:32:49 +03:00
ng0 71f048c624
gnu: Add libasr.
* gnu/packages/dns.scm (libasr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:28:06 +03:00
Efraim Flashner c11933c920
gnu: zile: Use 'modify-phases' syntax.
* gnu/packages/zile.scm (zile)[arguments]: Use 'modify-phases' syntax.
2016-10-19 17:10:17 +03:00
Efraim Flashner fa216a4d01
gnu: zile: Update to 2.4.13.
* gnu/packages/zile.scm (zile): Update to 2.4.13.
[home-page]: Use https.
2016-10-19 17:10:17 +03:00
Ludovic Courtès 4534d85e70
gnu: Add Ao.
* gnu/packages/engineering.scm (ao): New variable.
2016-10-19 15:54:10 +02:00
Ludovic Courtès a966281f2d
gnu: glfw: Propagate the relevant inputs.
* gnu/packages/gl.scm (glfw)[inputs]: Rename to...
[propagated-inputs]: ... this.  Add LIBXXF86VM.
2016-10-19 15:54:10 +02:00
Roel Janssen 99df12cd19
gnu: Add r-biocstyle.
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
2016-10-19 15:22:06 +02:00
Roel Janssen 207ce8fbe5
gnu: Add r-biocviews.
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
2016-10-19 15:09:55 +02:00
Benz Schenk b747718e23
gnu: Add iperf.
* gnu/packages/networking.scm (iperf): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-19 13:19:07 +01:00
Hartmut Goebel b5a5fb1927
gnu: python-dateutil, python-dateutil-2: Update to new home-page.
* gnu/packages/python.scm (python-dateutil, python2-dateutil,
  python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
2016-10-19 11:52:54 +02:00
Roel Janssen c79ad57a8d
gnu: Add r-optparse.
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
2016-10-19 10:48:56 +02:00
Roel Janssen 2acaaee550
gnu: Add r-getopt.
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
2016-10-19 09:55:45 +02:00
Federico Beffa 7d95c0006a
gnu: Add GHC 8.0.1.
* gnu/packages/haskell.scm (ghc-8): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 1bd00f1737
gnu: Add ghc-hashtables.
* gnu/packages/haskell.scm (ghc-hashtables): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa db61a00971
gnu: Add ghc-easyplot.
* gnu/packages/haskell.scm (ghc-easyplot): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 4225c7116d
gnu: Add ghc-hmatrix-gsl-stats.
* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 271a5365aa
gnu: Add ghc-hmatrix-special.
* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 932104abce
gnu: Add ghc-hmatrix-gsl.
* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 95595618b1
gnu: Add ghc-hmatrix.
* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 725dddd7fb
gnu: Add ghc-storable-complex.
* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa fb6d2d75f3
gnu: Add chez-fmt.
* gnu/packages/chez.scm (chez-fmt): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 87d6c9ef8a
gnu: Add chez-irregex.
* gnu/packages/chez.scm (chez-irregex): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 387541907f
gnu: Add chez-matchable
* gnu/packages/chez.scm (chez-matchable): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 74f9c19092
gnu: Add chez-sockets
* gnu/packages/chez.scm (chez-sockets): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 4dfe4eee55
gnu: Add chez-web
* gnu/packages/chez.scm (chez-web): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa c344b85dd0
gnu: Add chez-srfi.
* gnu/packages/chez.scm (chez-srfi): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 13bbc0cc94
gnu: chez-scheme: Move to new module.
* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ...
* gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-10-19 08:44:11 +02:00
Federico Beffa f7616df4af
gnu: chez-scheme: Fix i686 build.
* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize
  'configure' phase and simplify 'install-doc' phase.
2016-10-19 08:44:11 +02:00
Federico Beffa 4b86dde0d6
gnu: chez-scheme: Add search-path.
* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
2016-10-19 08:44:11 +02:00
Christopher Allan Webber 3d1fe340db
gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch.
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
2016-10-18 20:35:01 -05:00
Leo Famulari ca121ae8d7
gnu: mariadb: Update to 10.1.18.
* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
2016-10-18 21:32:11 -04:00
Leo Famulari 0cf3a7259b
gnu: mysql: Update to 5.7.16.
* gnu/packages/databases.scm (mysql): Update to 5.7.16.
2016-10-18 21:32:03 -04:00
Stephen Webber a56145e1fa
gnu: Add kobodeluxe.
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-18 20:23:03 -05:00
ng0 91988aee12
gnu: torsocks: Update to 2.2.0.
* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-18 23:45:06 +01:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures.
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-18 21:15:43 +02:00
Efraim Flashner 1dc30f9232
gnu: enlightenment: Update to 0.21.3.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
2016-10-18 08:57:54 +03:00
Mark H Weaver c9a71c6fda
gnu: dbus: Fix bad 'origin' form in dbus-1.10.12.
This is a followup to commit dcaf70897a.

* gnu/packages/glib.scm (dbus-1.10.12)[source]: Remove unneeded 'method'
field, so that 'inherit' comes first.
2016-10-17 21:04:57 -04:00
Efraim Flashner 00bfd498f9
gnu: tor: Update to 0.2.8.9.
* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
2016-10-18 00:25:30 +03:00
Efraim Flashner a31ac11385
gnu: vapoursynth: Update to 34.
* gnu/packages/video.scm (vapoursynth): Update to 34.
2016-10-18 00:08:09 +03:00
Efraim Flashner 8ee04627d8
gnu: zimg: Update to 2.3.
* gnu/packages/image.scm (zimg): Update to 2.3.
2016-10-18 00:07:20 +03:00
Efraim Flashner b333d00c35
gnu: jasper: Update to 1.900.5.
* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-17 23:51:38 +03:00
Mark H Weaver dcaf70897a
Merge branch 'master' into core-updates 2016-10-17 16:47:12 -04:00
Leo Famulari 6ace9f80f1
gnu: diffoscope: Update to 61.
* gnu/packages/package-management.scm (diffoscope): Update to 61.
2016-10-17 16:39:46 -04:00
Ludovic Courtès bf62b8ff79
gnu: guile-lib: Update to 0.2.3.
* gnu/packages/guile.scm (guile-lib): Update to 0.2.3.
[arguments]: Adjust 'patch-module-dir' to change both 'moddir' and
'godir'; use '@GUILE_EFFECTIVE_VERSION@' instead of a hard-coded
"2.0".  Add 'check' phase.
[native-inputs]: New field.
2016-10-17 22:06:44 +02:00
Ludovic Courtès 9d356c9c92
gnu: guile-lib: Use 'modify-phases'.
* gnu/packages/guile.scm (guile-lib)[arguments]: Use 'modify-phases'.
2016-10-17 22:06:44 +02:00
Ludovic Courtès c21af659b4
gnu: recutils: Adjust to Bash 4.4.
* gnu/packages/databases.scm (recutils)[arguments]: Add
'set-bash4.4-header-location' phase.
2016-10-17 22:06:44 +02:00
John Darrington 040b6299d5
gnu: openssh: Enable kerberos features.
* gnu/packages/ssh.scm (openssh) [arguments]: Add flag --with-kerberos5.
[inputs]: Add mit-krb5.
2016-10-17 21:52:53 +02:00
Mark H Weaver cd829fe306
gnu: linux-libre: Update to 4.8.2.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.2.
2016-10-17 15:23:46 -04:00
Mark H Weaver 43f1d02ddc
gnu: linux-libre@4.4: Update to 4.4.25.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.25.
2016-10-17 15:22:33 -04:00
Rene Saavedra 0bd697591b
gnu: Add xpad.
* gnu/packages/gnome.scm (xpad): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-10-17 15:09:31 -04:00
Leo Famulari 759aadd46f
gnu: python-requests-toolbelt: Fix build failure by adding missing dependencies.
* gnu/packages/python.scm (python-requests-toolbelt)[native-inputs]: Add
python-betamax, python-mock and python-pytest.
2016-10-17 13:54:51 -04:00
Leo Famulari 66d3f50a76
gnu: Add python-betamax.
* gnu/packages/python.scm (python-betamax, python2-betamax): New variables.
2016-10-17 13:54:51 -04:00
Leo Famulari a9871b7b52
gnu: python-vobject: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the python-vobject build to fail.

* gnu/packages/python.scm (python-vobject, python2-vobject)[arguments]: Disable
the tests.
2016-10-17 13:54:51 -04:00
Leo Famulari 8757f05046
gnu: python-wsgi-intercept: Fix build failure with Python 3.5.
* gnu/packages/python.scm (python-wsgi-intercept)[native-inputs]:
Add python-urllib3.
2016-10-17 13:54:47 -04:00
Ricardo Wurmus 5093729704
gnu: Add rcas-web.
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
2016-10-17 18:09:20 +02:00
Ricardo Wurmus 89984be46e
gnu: Add r-rcas.
* gnu/packages/bioinformatics.scm (r-rcas): New variable.
2016-10-17 18:09:16 +02:00
Ricardo Wurmus f90b2dbdb7
gnu: irrlicht: Update to 1.8.4.
* gnu/packages/games.scm (irrlicht): Update to 1.8.4.
[arguments]: Delete phase "apply-patch/mesa-10-fix".
[native-inputs]: Remove "patch/mesa-10-fix".
* gnu/packages/patches/irrlicht-mesa-10.patch: Delete file.
* gnu/local.mk (dist_path_DATA): Remove irrlicht patch.
2016-10-17 17:11:51 +02:00
Ricardo Wurmus b8a35ccea6
gnu: extremetuxracer: Update to 0.7.3.
* gnu/packages/games.scm (extremetuxracer): Update to 0.7.3.
[inputs]: Remove freetype, mesa, libice, libpng, sdl, sdl-mixer,
sdl-image, libsm, libunwind, libx11, libext, libxi, libxmu, libxt, tcl,
zlib; add sfml.
[arguments]: Remove field.
2016-10-17 17:11:43 +02:00
Ricardo Wurmus a6e25a50f9
gnu: sfml: Install pkgconfig files.
* gnu/packages/game-development.scm (sfml)[arguments]: Add configure
flag to install pkgconfig files.
2016-10-17 17:11:37 +02:00
Adonay Felipe Nogueira 8a666bc5cb
gnu: artanis: Remove implied $(DESTDIR) usage.
* gnu/packages/patches/artanis-fix-Makefile.in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/guile.scm (artanis)[source]: Use patch.
[arguments]: Remove DESTDIR from #:make-flags.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-17 15:20:11 +01:00
宋文武 3969ca548c
gnu: wrap-python3: Use a bash wrapper for 'python3-config'.
See <http://lists.gnu.org/archive/html/guix-devel/2016-07/msg00008.html>
for details.

* gnu/packages/python.scm (wrap-python3)[arguments]: Use a bash wrapper
instead of a symlink for python3-config.
2016-10-17 18:53:50 +08:00
Al McElrath dd04f56a2b
gnu: node: Update to 6.8.0.
Remove <https://debbugs.gnu.org/23744> and
<https://debbugs.gnu.org/23723> workaround.

* gnu/packages/node.scm (node): Update to 6.8.0.
  (node)[arguments]: Disabled more tests. Remove custom 'patch-shebangs'
  phase. Manually patch npm script shebang in new 'patch-npm-shebang'
  phase.
* gnu/packages/patches/node-9077.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-17 11:55:49 +02:00
Ben Woodcroft a8de0d1ec4
gnu: ruby-json-pure: Fix tests.
* gnu/packages/ruby.scm (ruby-json-pure)[arguments]: Remove unneeded
reference to 'json-java.gemspec' in 'Gemfile'.
2016-10-17 19:17:53 +10:00
Ben Woodcroft b8004a7b79
gnu: bundler: Update to 1.13.5.
* gnu/packages/ruby.scm (bundler): Update to 1.13.5.
2016-10-17 19:17:52 +10:00
Hartmut Goebel cb0866c325
gnu: Add geierlein.
* gnu/packages/finance.scm (geierlein): New variable.
2016-10-17 10:39:21 +02:00
Tobias Geerinckx-Rice 4fb5f83099
gnu: Add sslh.
* gnu/packages/networking.scm (sslh): New variable.
2016-10-17 02:02:15 +02:00
Tobias Geerinckx-Rice 2f96872727
gnu: httping: Update to 2.5.
* gnu/packages/networking.scm (httping): Update to 2.5.
2016-10-17 02:02:15 +02:00
Julien Lepiller f3e222165e
gnu: Add fbida.
* gnu/packages/pdf.scm (fbida): New variable.
2016-10-16 14:00:18 -04:00
Leo Famulari 964fc66936
gnu: python-requests-mock: Fix build failure with Python 3.5.
* gnu/packages/openstack.scm (python-requests-mock,
python2-requests-mock)[native-inputs]: Add python-docutils.
2016-10-16 11:43:30 -04:00
Leo Famulari 792e607903
gnu: xonsh: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the xonsh build to fail.

* gnu/packages/shells.scm (xonsh)[arguments]: Disable the tests.
2016-10-16 11:10:19 -04:00
Andreas Enge 60da9fb110
gnu: hdf4: Fix non-x86 architectures.
* gnu/packages/patches/hdf4-architectures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-16 17:00:56 +02:00
Leo Famulari f349d36e48
gnu: certbot, python-acme: Update to 0.9.3.
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.9.3.
[source]: Use pypi-uri.
(python-acme, python2-acme): Update to 0.9.3.
[source]: Use pypi-uri.
2016-10-16 09:26:36 -04:00
Leo Famulari 6c514128ec
gnu: python-dnspython: Update to 0.15.0.
* gnu/packages/python.scm (python-dnspython, python2-dnspython): Update
to 0.15.0.
2016-10-16 09:26:35 -04:00
Leo Famulari 0580e383c2
gnu: python-werkzeug: Update to 0.11.11.
* gnu/packages/python.scm (python-werkzeug, python2-werkzeug):
Update to 0.11.11.
2016-10-16 09:26:35 -04:00
Leo Famulari eb68d2685a
gnu: python-pyopenssl: Update to 16.1.0.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update
to 16.1.0
[source]: Use pypi-uri.
2016-10-16 09:26:35 -04:00
Leo Famulari caa0edb36c
gnu: python-pyasn1: Update to 0.1.9.
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.1.9.
[source]: Use pypi-uri.
2016-10-16 09:26:29 -04:00
Ricardo Wurmus b7afd01893
gnu: Add python-whoosh.
* gnu/packages/python.scm (python-whoosh, python2-whoosh): New variables.
2016-10-16 12:55:43 +02:00
Theodoros Foradis 569f601649
gnu: Add arm-none-eabi-toolchain variants.
* gnu/packages/embedded.scm (arm-none-eabi-toolchain): New procedure.
(arm-none-eabi-toolchain-4.9, arm-none-eabi-nano-toolchain-4.9,
arm-none-eabi-toolchain-6, arm-none-eabi-nano-toolchain-6): New
variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-10-16 11:53:11 +02:00
Theodoros Foradis dbc3c34ea0
gnu: Add arm-none-eabi-gcc-6.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable.
* gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file.
* gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patches.
2016-10-16 11:53:07 +02:00
Leo Famulari a39cc01632
gnu: python-ndg-httpsclient: Disable tests.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the python-ndg-httpsclient build to fail.

* gnu/packages/python.scm (python-ndg-httpsclient)[arguments]: Disable tests.
2016-10-15 22:43:41 -04:00
Leo Famulari ca0eee9df5
gnu: python-execnet: Disable tests.
The tests were silently skipped with Python 3.4. With Python 3.5, this
caused the python-execnet build to fail.

* gnu/packages/python.scm (python-execnet, python2-execnet)[arguments]: Disable
tests.
2016-10-15 22:20:38 -04:00
Leo Famulari 31c580068b
gnu: youtube-dl: Disable the tests.
The tests were silently skipped with Python 3.4. With Python 3.5, this
caused the youtube-dl build to fail.

* gnu/packages/video.scm (youtube-dl)[arguments]: Disable tests.
2016-10-15 21:17:17 -04:00
Leo Famulari 57e57d433a
gnu: youtube-dl: Update to 2016-10-16.
* gnu/packages/video.scm (youtube-dl): Update to 2016-10-16.
2016-10-15 21:17:03 -04:00
Leo Famulari f4a4b854e0
gnu: youtube-dl: Update to 2016-10-16.
* gnu/packages/video.scm (youtube-dl): Update to 2016-10-16.
2016-10-15 21:11:42 -04:00
Leo Famulari f76af41a76
gnu: radicale: Run the test suite with py.test.
* gnu/packages/dav.scm (radicale)[native-inputs]: Add python-pytest.
[arguments]: Replace the 'check' phase and run the tests with python-pytest.
2016-10-15 20:26:05 -04:00
Leo Famulari 2f87a77ff7
gnu: python2-file: Build with setuptools.
* gnu/packages/python.scm (python-file)[properties]: New field.
(python2-file): Use strip-python2-variant.
[native-inputs]: Add python2-setuptools.
2016-10-15 20:14:55 -04:00
Andy Patterson fcb9b9340f
gnu: dbus-1.10.12: Fix search paths.
Add the patches from dbus's source field back into its replacement. This ensures
that the grafted dbus package can find its services on GuixSD.

This is a follow-up to commit 34f9582aad.

* gnu/packages/glib.scm (dbus-1.10.12)[source]: Inherit from dbus.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-15 18:13:58 -04:00
Efraim Flashner 5f01e1bbc6
gnu: assimp: Update to 3.3.1.
* gnu/packages/graphics.scm (assimp): Update to 3.3.1.
[native-inputs]: Remove unzip.
2016-10-15 23:22:47 +03:00
Efraim Flashner 608bf1d38b
gnu: jsoncpp: Update to 1.7.7.
* gnu/packages/serialization.scm (jsoncpp): Update to 1.7.7.
2016-10-15 23:22:46 +03:00
Efraim Flashner 43593f5bc4
gnu: cereal: Update to 1.2.1.
* gnu/packages/serialization.scm (cereal): Update to 1.2.1.
2016-10-15 23:22:46 +03:00
Efraim Flashner d0cddec230
gnu: picocom: Update to 2.2.
* gnu/packages/terminals.scm (picocom): Update to 2.2.
2016-10-15 23:22:46 +03:00
Efraim Flashner 66bb5db7ab
gnu: termite: Use 'modify-phases' syntax.
* gnu/packages/terminals.scm (termite)[arguments]: Use 'modify-phases'
syntax.
2016-10-15 23:22:45 +03:00
Efraim Flashner ebe3515f78
gnu: termite: Update to 12.
* gnu/packages/terminals.scm (termite): Update to 12.
2016-10-15 23:22:45 +03:00
Efraim Flashner 9bf160a3d0
gnu: libgit2: Update to 0.24.2.
* gnu/packages/version-control.scm (libgit2): Update to 0.24.2.
[home-page]: Use https.
2016-10-15 23:22:45 +03:00
Efraim Flashner c2a3b23fba
gnu: abcde: Update to 2.7.2.
* gnu/packages/cdrom.scm (abcde): Update to 2.7.2.
[arguments]: Correct sysconfdir location.
2016-10-15 23:22:44 +03:00
Efraim Flashner 2e36f7e6b2
gnu: qt: Update to 5.6.2.
* gnu/packages/qt.scm (qt): Update to 5.6.2.
[home-page]: Update to new home-page.
2016-10-15 23:22:33 +03:00
Leo Famulari e1376e25a7
gnu: gd: Fix CVE-2016-8670.
* gnu/packages/patches/gd-CVE-2016-8670.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-15 15:31:49 -04:00
Ricardo Wurmus 7bc2f3ac14
gnu: guitarix: Update to 0.35.2.
* gnu/packages/audio.scm (guitarix): Update to 0.35.2.
2016-10-15 09:22:30 +02:00
宋文武 4c8c2b0f54
gnu: gtk+: Move desktop files into "bin" output.
* gnu/packages/gtk.scm (gtk+)[arguments]: Add 'move-desktop-files' phase.
2016-10-15 09:39:14 +08:00
Ricardo Wurmus b74d79dc5a
gnu: gx-switchless-wah-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-switchless-wah-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 759318fd77
gnu: gx-slow-gear-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-slow-gear-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 349753743f
gnu: gx-vintage-fuzz-master-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2)[arguments]: Add
phase "escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus c6e45a93d4
gnu: gx-super-fuzz-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 2dedc16b04
gnu: gx-voodoo-fuzz-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Ricardo Wurmus b9ac372c55
gnu: gx-hyperion-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-hyperion-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Ricardo Wurmus 9d54b12a49
gnu: gx-saturator-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-saturator-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Leo Famulari 470613f962
gnu: python-cryptography: Ignore spurious test failure.
* gnu/packages/python.scm (python-cryptography,
python2-cryptography)[arguments]: Add 'disable-failing-test' phase.
2016-10-14 16:58:09 -04:00
Alex Vong b280e67ca6
gnu: libraw: Update to 0.17.2 [fixes CVE-2015-{8366,8367}].
* gnu/packages/photo.scm (libraw): Update to 0.17.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-14 13:24:23 -04:00
Efraim Flashner 4a2798e067
gnu: freeimage: Use 'modify-phases' syntax.
* gnu/packages/image.scm (freeimage)[arguments]: Use 'modify-phases'
syntax.
2016-10-14 13:43:12 +03:00
Efraim Flashner 76e8566c1b
gnu: freeimage: Fix CVE-2016-5684.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
* gnu/packages/patches/freeimage-CVE-2016-5684.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-14 13:42:43 +03:00
Hartmut Goebel 0350a8bb1e
gnu: mail: Add notifymuch.
* gnu/packages/mail.scm (notifymuch): New variable.
2016-10-14 11:27:14 +02:00
Leo Famulari 90dcd49663
gnu: dbus: Replace with 1.10.12 [security fix].
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=98157>
"format string vulnerability processing ActivationFailure messages"

* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus-1.10.12): New variable.
2016-10-13 22:50:10 -04:00
Leo Famulari 34f9582aad
gnu: dbus: Replace with 1.10.12 [security fix].
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=98157>
"format string vulnerability processing ActivationFailure messages"

* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus-1.10.12): New variable.
2016-10-13 22:48:02 -04:00
Ludovic Courtès c62a31ca80
gnu: guile: Graft 2.0.13.
* gnu/packages/guile.scm (guile-2.0.13): New variable.
(guile-2.0)[replacement]: New field.
(guile-2.0/fixed)[properties, replacement]: New fields.
(guile-next)[replacement]: New field.
* gnu/packages/make-bootstrap.scm (%guile-static)[replacement]: New
field.
2016-10-13 23:08:17 +02:00
Ricardo Wurmus a9f55bf218
gnu: Add jack-keyboard.
* gnu/packages/music.scm (jack-keyboard): New variable.
2016-10-13 22:50:46 +02:00
Ricardo Wurmus d75e8f5a92
gnu: Add gx-switchless-wah-lv2.
* gnu/packages/music.scm (gx-switchless-wah-lv2): New variable.
2016-10-13 22:50:46 +02:00
Ricardo Wurmus 631f817586
gnu: Add gx-slow-gear-lv2.
* gnu/packages/music.scm (gx-slow-gear-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 40bffdfa2a
gnu: Add gx-vintage-fuzz-master-lv2.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 29f632220c
gnu: Add gx-super-fuzz-lv2.
* gnu/packages/music.scm (gx-super-fuzz-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 32536f0058
gnu: Add gx-voodoo-fuzz-lv2.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 894122382e
gnu: Add gx-hyperion-lv2.
* gnu/packages/music.scm (gx-hyperion-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 664f677fdc
gnu: Add gx-saturator-lv2.
* gnu/packages/music.scm (gx-saturator-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 3eb1a9643b
gnu: Add gx-suppa-tone-bender-lv2.
* gnu/packages/music.scm (gx-suppa-tone-bender-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d4bfdc29b
gnu: Add gx-push-pull-lv2.
* gnu/packages/music.scm (gx-push-pull-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d95cd306b
gnu: Add gx-tone-mender-lv2.
* gnu/packages/music.scm (gx-tone-mender-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus cdc7a021b5
gnu: Add gx-overdriver-lv2.
* gnu/packages/music.scm (gx-overdriver-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 85ae347ee7
gnu: Add gx-vbass-preamp-lv2.
* gnu/packages/music.scm (gx-vbass-preamp-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 49604680cd
gnu: Add gx-guvnor-lv2.
* gnu/packages/music.scm (gx-guvnor-lv2): New variable.
2016-10-13 22:50:43 +02:00
Arun Isaac 71d3ee1cbb
gnu: Add emacs-nginx-mode.
* gnu/packages/emacs.scm (emacs-nginx-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:32:16 +03:00
ng0 2edbfbf588
gnu: Add emacs-evil.
* gnu/packages/emacs.scm (emacs-evil): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:32:04 +03:00
ng0 ce74e52011
gnu: Add emacs-goto-chg.
* gnu/packages/emacs.scm (emacs-goto-chg): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:31:51 +03:00
Hartmut Goebel 7a8894e803
gnu: python-pathlib: Update description.
* gnu/packages/python.scm (python-pathlib, python2-pathlib): Update
  description.
2016-10-13 17:22:42 +02:00
Hartmut Goebel 190ba6c2af
gnu: python-keyring: Update home-page url.
* gnu/packages/python.scm (python-keyring, python2-keyring): Update home-page
  url.
2016-10-13 17:22:41 +02:00
Hartmut Goebel 6a8f26a441
gnu: python-pylockfile: Update home-page url.
* gnu/packages/python.scm (python-pylockfile, python2-pylockfile): Update
  home-page url.
2016-10-13 17:22:41 +02:00
Hartmut Goebel b02f7a21d1
gnu: python-zope-testing: Strip byte-code and backup-files from source.
* gnu/package/python.scm (python-zope-testing, python2-zope-testing)[source]:
  Add snippet to strip byte-code and backup-files.
2016-10-13 17:22:40 +02:00
Hartmut Goebel de585a7e64
gnu: python-pytest-xdist: Remove python byte-code files from source.
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[source]: Add snippet.
2016-10-13 17:22:40 +02:00
Hartmut Goebel 32d045683d
gnu: python2-pytest-runner, python2-msgpack: Remove duplicate definitions.
* gnu/packages/python.scm (python2-pytest-runner): Was defined twice, remove
  duplicate definition. (python2-msgpack): Was defined twice, but differently,
  remove the obviously wrong second definition.
2016-10-13 17:22:39 +02:00
Ludovic Courtès 3abd66aa0c
gnu: make-bootstrap: Remove duplicate definition of 'bash-static'.
* gnu/packages/make-bootstrap.scm (%bash-static): Remove.
(%static-inputs): Use STATIC-BASH instead of %BASH-STATIC.
2016-10-13 16:26:53 +02:00
Ludovic Courtès c86447f486
gnu: bash-minimal: Remove "include" output.
* gnu/packages/bash.scm (bash-minimal)[outputs]: New field.
(static-bash)[outputs]: Remove.
2016-10-13 16:26:49 +02:00
Leo Famulari e3d9da3c0c
gnu: gnupg: Remove superfluous patch.
This patch was integrated into GnuPG 2.1.14.

* gnu/packages/patches/gnupg-fix-expired-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnupg.scm (gnupg)[source]: Remove patch.
2016-10-13 10:05:23 -04:00
Mark H Weaver c8ed7309f4
git: webkitgtk: Update to 2.14.1.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-10-13 06:36:05 -04:00
Mark H Weaver b23ece1d2c
gnu: linux-libre@4.1: Update to 4.1.34.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.34.
2016-10-13 06:29:14 -04:00
Mark H Weaver 34708a221a
gnu: ghostscript: Eliminate graft.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: Remove field.
[source]: Add new patches from 'ghostscript/fixed'.
(ghostscript/fixed): Remove variable.
(ghostscript/x): Inherit from 'ghostscript'.
2016-10-13 05:54:22 -04:00
Mark H Weaver 061d7f3bd2
Merge branch 'master' into core-updates 2016-10-13 05:53:07 -04:00
Mark H Weaver 1cc213850a
gnu: graphicsmagick: Update to 1.3.25-1-56c8cae [security fixes].
Fixes CVE-2016-7800, CVE-2016-7996, CVE-2016-7997, and several other flaws.

* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.25-1-56c8cae.
[source]: Change method from 'url-fetch' to 'hg-fetch'.  Add 'file-name'.
2016-10-13 05:49:33 -04:00
Mark H Weaver e98e9f4e85
gnu: imagemagick: Disable tests.
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Disable tests.
2016-10-13 05:28:25 -04:00
Mark H Weaver 59929e9849
gnu: imagemagick: Update to 6.9.6-2 [Fixes CVE-2016-{7799,7906}].
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-2.
2016-10-13 04:28:52 -04:00
Mark H Weaver ab8536e4a8
gnu: ghostscript-with-x: Avoid inheriting replacement field.
This is a followup to commit 1de17a648f.

* gnu/packages/ghostscript.scm (ghostscript/fixed)[replacement]:
Override inherited value.
2016-10-13 03:38:03 -04:00
Mark H Weaver 1de17a648f
gnu: ghostscript: Fix CVE-2013-5653 and CVE-2016-{7976,7978,7979,8602}.
* gnu/packages/patches/ghostscript-CVE-2013-5653.patch,
gnu/packages/patches/ghostscript-CVE-2016-7976.patch,
gnu/packages/patches/ghostscript-CVE-2016-7978.patch,
gnu/packages/patches/ghostscript-CVE-2016-7979.patch,
gnu/packages/patches/ghostscript-CVE-2016-8602.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript/x): Inherit 'ghostscript/fixed'.
2016-10-13 03:30:21 -04:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-12 23:35:43 +02:00
Leo Famulari 6671ce9370
gnu: ath9k-htc-firmware: Update binutils patch for binutils 2.27.
* gnu/packages/patches/ath9k-htc-firmware-binutils.patch: Remove
unnecessary and conflicting hunk. Add hunk required for binutils 2.27.
2016-10-12 16:17:22 -04:00
Leo Famulari 9ebe87fe59
gnu: python-celery: Update to 3.1.24.
* gnu/packages/python.scm (python-celery, python2-celery): Update to 3.1.24.
[arguments]: Disable some tests with break with Python 3.5.
2016-10-12 13:24:51 -04:00
Leo Famulari a6bb9e446f
gnu: python-billiard: Update to 3.3.0.23.
* gnu/packages/python.scm (python-billiard, python2-billiard):
Update to 3.3.0.23.
2016-10-12 13:24:51 -04:00
Leo Famulari 0cb5982268
gnu: python-kombu: Update to 3.0.37.
* gnu/packages/python.scm (python-kombu, python2-kombu): Update to 3.0.37.
[propagated-inputs]: Add python-redis.
2016-10-12 13:24:47 -04:00
Leo Famulari 68ce1875d5
Merge branch 'master' into core-updates 2016-10-12 12:42:37 -04:00
Tobias Geerinckx-Rice ff9c2d819a
gnu: mcelog: Update to 142.
* gnu/packages/linux.scm (mcelog): Update to 142.
2016-10-12 18:20:17 +02:00
Tobias Geerinckx-Rice 9c49da5778
gnu: btrfs-progs: Update to 4.8.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.1.
2016-10-12 18:19:48 +02:00
Mark H Weaver 9bc79c118e
gnu: icecat: Use normal 'sqlite'.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Use normal 'sqlite'.
2016-10-12 09:28:49 -04:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
宋文武 82adf4952a
gnu: gtk+: Fix source hash.
* gnu/packages/gtk.scm (gtk+)[source]: Fix hash.
2016-10-12 21:12:34 +08:00
Mark H Weaver bfb48f4f33
gnu: icecat: Update to 45.3.0-gnu1-beta. Add fixes from Firefox ESR 45.4.0.
Includes fixes for CVE-2016-5250, CVE-2016-5257, CVE-2016-5261, CVE-2016-5270,
CVE-2016-5272, CVE-2016-5274, CVE-2016-5276, CVE-2016-5277, CVE-2016-5278,
CVE-2016-5280, CVE-2016-5281, and CVE-2016-5284.

* gnu/packages/gnuzilla.scm (mozilla-patch): New procedure.
(icecat): Update to 45.3.0-gnu1.
[source]: Add alternate source URI for the beta release.  Update patches.
[inputs]: Replace 'sqlite' input with a customized sqlite with
SQLITE_ENABLE_DBSTAT_VTAB support.
[native-inputs]: Add 'which'.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: Rename to...
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: ... and adapt
to version 45.
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
2016-10-11 12:59:26 -04:00
David Thompson b25f060fbd
gnu: redis: Update to 3.2.4.
* gnu/packages/databases.scm (redis): Update to 3.2.4.
[arguments]: Add LDFLAGS to #:make-flags to work around missing linker
flag.
2016-10-11 12:24:57 -04:00
Leo Famulari 6667ee3a7a
gnu: newt: Update source and home-page URLs.
* gnu/packages/slang.scm (newt)[source]: Update URL.
[home-page]: Update URL.
2016-10-11 12:06:11 -04:00
Leo Famulari 65375f74bc
gnu: newt: Update source and home-page URLs.
* gnu/packages/slang.scm (newt)[source]: Update URL.
[home-page]: Update URL.
2016-10-11 12:05:40 -04:00
Ben Woodcroft 3dd50d974b
gnu: vsearch: Update to 2.3.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.0.
2016-10-11 22:29:48 +10:00
Ben Woodcroft 99c9056141
gnu: diamond: Update to 0.8.23.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.23.
2016-10-11 19:51:49 +10:00
Efraim Flashner bde70caa06
gnu: qemu: Patch CVE-2016-857{6,7,8}.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8578.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2016-10-11 10:59:07 +03:00
Leo Famulari b4f91d0eda
gnu: borg: Run the test suite.
* gnu/packages/backup.scm (borg)[native-inputs]: Add python-pytest.
[arguments]: Invoke the tests with python-pytest after the install
phase. Set HOME=/tmp in the 'set-env' phase.
2016-10-11 01:51:47 -04:00
Leo Famulari 1df6d73bdf
gnu: attic: Disable the test suite.
* gnu/packages/backup.scm (attic)[arguments]: Set #:tests? #f.
2016-10-11 01:18:34 -04:00
Andy Wingo 085cca5bc1
gnu: cups-filters: Look for test page in own output dir.
* gnu/packages/cups.scm (cups-filters): Update to look for the test page
  template in the cups-filter output dir, as cups and cups-filter do not
  share an output dir.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 23:47:03 +02:00
Ricardo Wurmus 8f941dd24f
gnu: Add infamous-plugins.
* gnu/packages/audio.scm (infamous-plugins): New variable.
2016-10-10 22:41:34 +02:00
ng0 99a61dad33
gnu: font-un: Update source uri.
Fixes <http://bugs.gnu.org/22908>.

* gnu/packages/fonts.scm (font-un)[source]: Update source uri.
2016-10-10 13:52:51 -04:00
Efraim Flashner d68dacd9cc
gnu: perl-module-build: Update to 0.4220.
* gnu/packages/perl.scm (perl-module-build): Update to 0.4220.
2016-10-10 20:19:50 +03:00
Tobias Geerinckx-Rice 3b1b56379c
gnu: man-pages: Update to 4.08.
* gnu/packages/man.scm (man-pages): Update to 4.08.
2016-10-10 16:00:23 +02:00
Efraim Flashner 5be2931c1e
gnu: cmocka: Update to 1.1.0.
* gnu/packages/check.scm (cmocka): Update to 1.1.0.
2016-10-10 15:13:12 +03:00
Efraim Flashner 997b6ea504
gnu: cppcheck: Update to 1.76.
* gnu/packages/check.scm (cppcheck): Update to 1.76.
2016-10-10 13:50:23 +03:00
Efraim Flashner 7286dd218b
gnu: libuninameslist: Use 'modify-phases' syntax.
* gnu/packages/fontutils.scm (libuninameslist)[arguments]: Use
'modify-phases' syntax.
2016-10-10 12:58:14 +03:00
Efraim Flashner f726b7c526
gnu: libuninameslist: Update to 20160701.
* gnu/packages/fontutils.scm (libuninameslist): Update to 20160701.
2016-10-10 12:56:54 +03:00
Efraim Flashner b07e086373
gnu: bash-completion: Update to 2.4.
* gnu/packages/bash.scm (bash-completion): Update to 2.4.
[home-page]: Update to redirected home-page.
2016-10-10 11:58:11 +03:00
Efraim Flashner 36646075ef
gnu: obs: Update to 0.16.2.
* gnu/packages/video.scm (obs): Update to 0.16.2.
2016-10-10 11:07:07 +03:00
Efraim Flashner ff0ecefc0e
gnu: laby: Update source uri.
* gnu/packages/games.scm (laby)[source]: Use the publicly visible
download uri.
2016-10-10 09:36:07 +03:00
Ricardo Wurmus aed023ffd4
gnu: Add gxtuner.
* gnu/packages/music.scm (gxtuner): New variable.
2016-10-10 07:51:24 +02:00
Christopher Baines 6930804312
gnu: gnome: Add pinentry-gnome3 to gnome
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add
pinentry-gnome3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 00:06:15 +02:00
Christopher Baines 41edb23f5e
gnu: Add pinentry-gnome3.
* gnu/packages/gnupg.scm (pinentry-gnome3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 00:06:15 +02:00
Christopher Baines 9614897b71
gnu: pinentry: Remove 'gpg2' from description.
* gnu/package/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-qt)
[description]: The default in Guix is gpg, so only use this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 00:06:15 +02:00
Al McElrath d976eccd26
gnu: sane-backends: Update to 1.0.25.
* gnu/packages/scanner.scm (sane-backends): Update to 1.0.25.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-09 17:50:28 -04:00
Marius Bakke fc0081213d
gnu: wpa-supplicant: Update to 2.6.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Update to
  2.6. Remove 'patches' field.
* gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: Delete
  files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-09 17:37:36 -04:00
Ludovic Courtès 6f9d5b2e8c
gnu: guile-ssh: Update to 0.10.1.
* gnu/packages/ssh.scm (libssh-0.6): Remove.
(guile-ssh): Update to 0.10.1.
[inputs]: Use LIBSSH instead of LIBSSH-0.7.3.
[arguments]: Remove #:configure-flags.
2016-10-09 23:23:11 +02:00
Ludovic Courtès 92b725829b
gnu: guile-ssh: Compile .scm files after patching them.
Before this commit, the .go files were obtained by compiling the
unpatched .scm files, so they would refer to libguile-ssh without its
absolute file name.

* gnu/packages/ssh.scm (guile-ssh)[arguments]: Move
'fix-libguile-ssh-file-name' before 'build'.  Have it run "make install
-C libguile-ssh" first.
2016-10-09 23:23:11 +02:00
Ludovic Courtès 8a8f6590ec
gnu: guile-ssh: Use 'modify-phases'.
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Use 'modify-phases'.
2016-10-09 23:23:11 +02:00
Efraim Flashner a9c958b5aa
gnu: gcj: Switch dejagnu test command.
* gnu/packages/gcc.scm (gcj)[arguments]: Switch the depreciated dejagnu
command 'absolute' for the new testing command 'file normalize'.
2016-10-10 00:16:56 +03:00
Kei Kebreau fedcb99d84
gnu: lynx: Update to 2.8.9dev.9 and fix GnuTLS support.
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.9.
[arguments]: Append the path to the GnuTLS to "--with-gnutls=".
2016-10-09 16:58:48 -04:00
Tobias Geerinckx-Rice 8ea83d60e4
gnu: hexchat: Update to 2.12.2.
* gnu/packages/messaging.scm (hexchat): Update to 2.12.2.
2016-10-09 22:55:23 +02:00
Leo Famulari aae34a0c2d
gnu: vdirsyncer: Update to 0.13.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.13.1.
2016-10-09 16:49:27 -04:00
Ricardo Wurmus 6f83d224bb
gnu: tcsh: Do not define BSDWAIT.
* gnu/packages/patches/tcsh-do-not-define-BSDWAIT.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[source]: Use it.
2016-10-09 22:38:37 +02:00
Leo Famulari 9e672bcc0b
gnu: libupnp: Fix CVE-2016-6255.
* gnu/packages/patches/libupnp-CVE-2016-6255.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libupnp.scm (libupnp): Use it.
2016-10-09 15:57:28 -04:00
Ricardo Wurmus a76abae19f
gnu: ardour: Update to 5.4.
* gnu/packages/audio.scm (ardour): Update to 5.4.
[inputs]: Add libarchive.
2016-10-09 20:10:56 +02:00
Danny Milosavljevic adc2f048cb
gnu: Add gtkwave.
* gnu/packages/fpga.scm (gtkwave): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic bca3797be4
gnu: Add arachne-pnr.
* gnu/packages/fpga.scm (arachne-pnr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic 36aa11c785
gnu: Add icestorm.
* gnu/packages/fpga.scm (icestorm): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic 92fc940fdb
gnu: Add yosys.
* gnu/packages/fpga.scm (yosys): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic 44721336de
gnu: Add iverilog.
* gnu/packages/fpga.scm (iverilog): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:21 +03:00
Danny Milosavljevic adba5f08de
gnu: Add abc.
* gnu/packages/fpga.scm (abc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:10 +03:00
Ricardo Wurmus 7f43ff965f
gnu: guile-next: Increase timeout.
* gnu/packages/guile.scm (guile-next)[properties]: Set timeout to
20 hours.
2016-10-09 15:46:52 +02:00
Ricardo Wurmus a299a8992c
gnu: Add newlib-nano-arm-none-eabi.
* gnu/packages/embedded.scm (newlib-nano-arm-none-eabi): New variable.
2016-10-09 15:45:59 +02:00
Ricardo Wurmus 6c39886a80
gnu: Add newlib-arm-none-eabi.
* gnu/packages/embedded.scm (newlib-arm-none-eabi): New variable.
2016-10-09 15:45:59 +02:00
Ricardo Wurmus 35a37efbfd
gnu: Add arm-none-eabi cross compiler.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for "arm-eabi".
* gnu/packages/embedded.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-10-09 15:45:59 +02:00
ng0 6ad13b591e
gnu: Add limnoria.
* gnu/packages/irc.scm (limnoria): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 13:09:54 +03:00
ng0 da069d7ecc
gnu: Add python-feedparser.
* gnu/packages/python.scm (python-feedparser): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 13:09:50 +03:00
ng0 73acc19334
gnu: Add python-socksipy-branch.
* gnu/packages/python.scm (python-socksipy-branch): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 13:09:31 +03:00
Andy Patterson bc1c995e6e
gnu: Add qtox.
* gnu/packages/messaging.scm (qtox): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 12:11:43 +03:00
Andy Patterson 62ea44fc89
gnu: Add sqlcipher.
* gnu/packages/database.scm (sqlcipher): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 12:09:19 +03:00
Danny Milosavljevic 0c60cc5346
gnu: Add mtd-utils.
* gnu/packages/linux.scm (mtd-utils): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 12:07:45 +03:00
Efraim Flashner 0c4944f07c
gnu: autogen: Update to 5.18.12.
* gnu/packages/autogen.scm (autogen): Update to 5.18.12.
[home-page]: Use https.
2016-10-09 09:44:40 +03:00
Efraim Flashner 9835458f4d
gnu: xboard: Update to 4.9.1.
* gnu/packages/games.scm (xboard): Update to 4.9.1.
[home-page]: Use https.
2016-10-09 09:18:51 +03:00
Efraim Flashner 72d6655c55
gnu: dejagnu: Use 'modify-phases' syntax.
* gnu/packages/dejagnu.scm (dejagnu)[arguments]: Use 'modify-phases'
syntax.
2016-10-09 08:56:10 +03:00
Efraim Flashner 539ab1afdd
gnu: dejagnu: Update to 1.6.
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.
[home-page]: Use https.
[license]: Update to gpl3+.
2016-10-09 08:55:51 +03:00
Efraim Flashner caaa715d16
gnu: gdb: Update to 7.12.
* gnu/packages/gdb.scm (gdb): Update to 7.12.
[home-page]: Use https.
2016-10-09 06:47:59 +03:00
Efraim Flashner 80bc37737c
gnu: gnuastro: Update to 0.2.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.2.
[home-page]: Use https.
2016-10-08 23:55:40 +03:00
Efraim Flashner e775f48ebe
gnu: python-xlrd: Update source location.
* gnu/packages/python.scm (python-xlrd)[source]: Use 'pypi-uri' syntax.
2016-10-08 23:41:01 +03:00
Efraim Flashner 824f7de882
gnu: freeipmi: Update to 1.5.4.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.4.
[home-page]: Use https.
2016-10-08 23:32:19 +03:00
Efraim Flashner 4726dd2063
gnu: ccache: Update to 3.3.2.
* gnu/packages/ccache.scm (ccache): Update to 3.3.2.
2016-10-08 23:26:29 +03:00
Efraim Flashner 6e185f74b7
gnu: offlineimap: Update to 7.0.8.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.8.
2016-10-08 23:26:29 +03:00
Efraim Flashner 9917b5f008
gnu: ldb: Update to 1.1.27.
* gnu/packages/samba.scm (ldb): Update to 1.1.27.
2016-10-08 23:26:28 +03:00
Efraim Flashner 6ccb78144c
gnu: tdb: Use 'modify-phases' syntax.
* gnu/packages/databases.scm (tdb)[arguments]: Use 'modify-phases' syntax.
2016-10-08 23:26:28 +03:00
Efraim Flashner 1abd090487
gnu: tdb: Update to 1.3.11.
* gnu/packages/databases.scm (tdb): Update to 1.3.11.
[home-page]: Use https.
2016-10-08 23:26:28 +03:00
Efraim Flashner 881799892c
gnu: tevent: Update to 0.9.31.
* gnu/packages/samba.scm (tevent): Update to 0.9.31.
2016-10-08 23:26:27 +03:00
Efraim Flashner 93151e4185
gnu: talloc: Update to 2.1.8.
* gnu/packages/samba.scm (talloc): Update to 2.1.8.
2016-10-08 23:26:27 +03:00
Efraim Flashner d073b58f67
gnu: samba: Update to 4.5.0.
* gnu/packages/samba.scm (samba): Update to 4.5.0.
[source]: Update source uri.
2016-10-08 23:26:26 +03:00
Alex Kost 86d959bdfd
gnu: emacs-hydra: Update to 0.13.6.
* gnu/packages/emacs.scm (emacs-hydra): Update to 0.13.6.
2016-10-08 21:03:43 +03:00
Alex Kost 35d1ade76d
gnu: emacs-hl-todo: Update to 1.7.1.
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.7.1.
2016-10-08 21:03:43 +03:00
Alex Kost 0e7c408995
gnu: emacs-hl-todo: Fix source file-name.
* gnu/packages/emacs.scm (emacs-hl-todo)[source]: Use versioned
file-name.
2016-10-08 21:03:43 +03:00
Alex Kost 59c827f45f
gnu: emacs-smartparens: Update to 1.8.0.
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.8.0.
2016-10-08 21:03:43 +03:00
Alex Kost 4a1eafb071
gnu: emacs-with-editor: Update to 2.5.6.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.6.
2016-10-08 21:03:43 +03:00
Alex Kost fb0de6f77c
gnu: geiser-next: Deprecate.
* gnu/packages/emacs.scm (geiser-next): Deprecate.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-08 21:03:43 +03:00
Alex Kost 113e23e099
gnu: geiser: Update to 0.9.
* gnu/packages/emacs.scm (geiser): Update to 0.9.
2016-10-08 21:03:43 +03:00
Mark H Weaver cb60e975c2
gnu: linux-libre: Update to 4.8.1.
* gnu/packages/linux.scm (linux-libre): Update to 4.8.1.
(%linux-libre-version, %linux-libre-hash): Update to 4.8.1.
2016-10-08 11:35:43 -04:00
Mark H Weaver ca86791881
gnu: linux-libre@4.4: Update to 4.4.24.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.24.
2016-10-08 11:32:37 -04:00
Andy Wingo 95264cc6b9
gnu: cups-filters: Use ghostscript with CUPS driver.
* gnu/packages/cups.scm (ghostscript/cups): New variable.
  (cups-filters): Use ghostscript/cups.  Capture path to "gs" at
  compilation time.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-08 15:44:11 +02:00
Ludovic Courtès b6dfaf17a1
gnu: libxcb: Update to 1.11.1.
* gnu/packages/xorg.scm (libxcb): Update to 1.11.1.
2016-10-08 15:34:04 +02:00
Andy Patterson 96784438f5
gnu: Add sbcl-stumpwm-with-slynk.
* gnu/packages/lisp.scm (sbcl-stumpwm+slynk): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:36 +08:00
Andy Patterson e3e171ee81
gnu: Add cl-slynk.
* gnu/packages/lisp.scm (cl-slynk, sbcl-slynk, ecl-slynk): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:36 +08:00
Andy Patterson d075960f60
gnu: Add cl-stumpwm.
* gnu/packages/lisp.scm (cl-stumpwm, sbcl-stumpwm, ecl-stumpwm): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 4b51b21ccf
gnu: Add cl-clx.
* gnu/packages/lisp.scm (cl-clx, sbcl-clx, ecl-clx): New variables.
* gnu/packages/patches/clx-remove-demo.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 5aa608a7e8
gnu: Add cl-ppcre.
* gnu/packages/lisp.scm (cl-ppcre, sbcl-cl-pprcre, ecl-cl-pprcre): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 3c55c780f9
gnu: Add cl-flexi-streams.
* gnu/packages/lisp.scm (cl-flexi-streams, sbcl-flexi-streams)
(ecl-flexi-streams): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 059cab307f
gnu: Add cl-trivial-gray-streams.
* gnu/packages/lisp.scm (cl-trivial-gray-streams)
(sbcl-trivial-gray-streams, ecl-trivial-gray-streams): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 8662809d1b
gnu: Add cl-bordeaux-threads.
* gnu/packages/lisp.scm (cl-bordeaux-threads, sbcl-bordeaux-threads)
(ecl-bordeaux-threads): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 86022c926b
gnu: Add cl-fiveam.
* gnu/packages/lisp.scm (cl-fiveam, sbcl-fiveam, ecl-fiveam): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson a72debb7cc
gnu: Add cl-alexandria.
* gnu/packages/lisp.scm (cl-alexandria, sbcl-alexandria)
(ecl-alexandria): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Ben Woodcroft 53aec0999f
gnu: bundler: Update to 1.13.2.
* gnu/packages/ruby.scm (bundler): Update to 1.13.2.
2016-10-08 22:47:18 +10:00
Ben Woodcroft c2ad4d701e
gnu: python-xlrd: Update to 1.0.0.
* gnu/packages/python.scm (python-xlrd, python2-xlrd): Update to 1.0.0.
2016-10-08 22:29:59 +10:00
Ben Woodcroft f49511dbff
gnu: ruby-mime-types-data: Update to 3.2016.0521.
* gnu/packages/ruby.scm (ruby-mime-types-data): Update to 3.2016.0521.
2016-10-08 22:29:58 +10:00
Ben Woodcroft d034c779eb
gnu: ruby-tzinfo-data: Update to 1.2016.7.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.7.
2016-10-08 22:29:58 +10:00
Ben Woodcroft 5ed00e13d2
gnu: ruby-domain-name: Update to 0.5.20160826.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20160826.
2016-10-08 22:29:58 +10:00
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
2016-10-08 22:29:58 +10:00
Ben Woodcroft d91cb67dd7
gnu: ruby-sequel: Update to 4.39.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.39.0.
2016-10-08 22:29:55 +10:00
Ricardo Wurmus 7fd30d1be4
gnu: yoshimi: Update to 1.4.1.
* gnu/packages/music.scm (yoshimi): Update to 1.4.1.
[arguments]: Add build phase "find-ncurses".
2016-10-08 14:03:56 +02:00
Ben Woodcroft 9602e3cce9
gnu: python2-dendropy: Fix tests.
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
2016-10-08 21:38:17 +10:00
Leo Famulari f803f775d2
gnu: vigra: Workaround rounding error in test suite on 32-bit CPUs.
* gnu/packages/image.scm (vigra)[arguments]: Pass '-ffloat-store' to
C_FLAGS and CXX_FLAGS.
2016-10-07 22:44:30 -04:00
Ricardo Wurmus 382aacc5a3
gnu: drumstick: Update to 1.1.0.
* gnu/packages/music.scm (drumstick): Update to 1.1.0.
2016-10-08 00:15:53 +02:00
Ricardo Wurmus e35ce6893c
gnu: tbb: Update to 2017_20160916.
* gnu/packages/tbb.scm (tbb): Update to 2017_20160916.
2016-10-08 00:03:24 +02:00
Ludovic Courtès e052c7e1d5
gnu: gcc@4.8: Use an older Texinfo.
* gnu/packages/gcc.scm (gcc-4.8)[native-inputs]: New field.
(gcc-4.9): Inherit from GCC-4.7.
2016-10-07 22:12:16 +02:00
Efraim Flashner fb29e737d4
gnu: ncdu: Update to 1.12.
* gnu/packages/ncdu.scm (ncdu): Update to 1.12.
[source]: Use https.
[license]: Use https.
[home-page]: Use https.
2016-10-07 14:26:12 +03:00
Efraim Flashner 2ff746dcd2
gnu: isl: Add support for aarch64.
* gnu/packages/gcc.scm (isl)[source]: Add patch.
* gnu/packages/patches/isl-0.11.1-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-07 12:26:44 +03:00
Efraim Flashner 21e5e1e070
gnu: cmake: Build 'ccmake' binary.
* gnu/packages/cmake.scm (cmake)[inputs]: Add ncurses.
2016-10-07 12:26:36 +03:00
Ricardo Wurmus b314360f30
gnu: abbaye: Update source URL.
* gnu/packages/games.scm (abbaye)[source]: Update tarball URL.
2016-10-07 09:22:44 +02:00
Leo Famulari ae336f8b84
gnu: khal: Update to 0.8.4.
* gnu/packages/calendar.scm (khal): Update to 0.8.4.
2016-10-07 01:48:45 -04:00
John Darrington c8f354588e
gnu: tzdata: Use modify-phases
* gnu/packages/base.scm (tzdata)[arguments]: Replace alist- procedures
with modify-phases
2016-10-07 06:59:49 +02:00
John Darrington 12b85b3787
gnu: tzdata: Fix dangling symbolic link.
* gnu/packages/base.scm (tzdata)[arguments]: Replace dangling symbolic link
with the correct path.
2016-10-07 06:59:42 +02:00
Leo Famulari 1d8de185b8
gnu: openssl: Update to 1.0.2j.
* gnu/packages/tls.scm (openssl): Update to 1.0.2j.
[replacement]: Remove field
[source]: Remove 'openssl-CVE-2016-2177.patch' and
'openssl-CVE-2016-2178.patch'.
(openssl-1.0.2j): Remove variable.
(openssl-next)[replacement]: Remove field.
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-06 17:50:17 -04:00
Leo Famulari 17b56c06e9
gnu: tzdata: Update to 2016g.
* gnu/packages/base.scm (tzdata): Update to 2016g.
2016-10-06 17:45:27 -04:00
Leo Famulari 7ca97fae36
gnu: lvm2: Make sure compiled objects are stripped.
* gnu/packages/linux.scm (lvm2)[arguments]: Add 'make-objects-writeable' phase.
2016-10-06 17:43:44 -04:00
Leo Famulari 123c0ffb87
gnu: lvm2: Update to 2.02.166.
* gnu/packages/linux.scm (lvm2): Update to 2.02.166.
2016-10-06 17:43:44 -04:00
Leo Famulari 3afbc6b3c3
gnu: lvm2: Use 'modify-phases'.
* gnu/packages/linux.scm (lvm2)[arguments]: Use 'modify-phases'.
2016-10-06 17:43:39 -04:00
Efraim Flashner 59fed2b609
gnu: nginx: Update to 1.11.4.
* gnu/packages/web.scm (nginx): Update to 1.11.4.
[source] Use https.
[home-page]: Use https.
2016-10-06 22:01:00 +03:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5.
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-06 18:14:45 +02:00
8p8c b94ee996ce
gnu: font-hack: Remove empty doc directory.
* gnu/packages/fonts.scm (font-hack)[arguments]: Remove superfluous code
in #:builder.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:59:05 +08:00
Andy Patterson fb7dc6d647
gnu: ecl: Honour XDG_DATA_DIRS/ecl-bundle-systems.
* gnu/packages/lisp.scm (ecl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:33:55 +08:00
Andy Patterson 8d0489aeb6
gnu: sbcl: Honour XDG_DATA_DIRS/sbcl-bundle-systems.
* gnu/packages/lisp.scm (asdf-substitutions): New variable.
(sbcl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:33:55 +08:00
Ricardo Wurmus eb0ff8a382
gnu: Add ghc-pandoc-citeproc.
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus bfdfb0f63f
gnu: Add ghc-xml-conduit.
* gnu/packages/haskell.scm (ghc-xml-conduit): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus e9ef2c51d5
gnu: Add ghc-xml-types.
* gnu/packages/haskell.scm (ghc-xml-types): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus 1aa45bbf6f
gnu: Add ghc-conduit-extra.
* gnu/packages/haskell.scm (ghc-conduit-extra): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus 9ce764b689
gnu: Add ghc-rfc5051.
* gnu/packages/haskell.scm (ghc-rfc5051): New variable.
2016-10-06 14:18:24 +02:00
Ricardo Wurmus 37e02bf65b
gnu: Add ghc-hs-bibutils.
* gnu/packages/haskell.scm (ghc-hs-bibutils): New variable.
2016-10-06 14:18:24 +02:00
Ricardo Wurmus b376463552
gnu: ghc-streaming-commons: Remove standard packages from inputs.
The "directory" and "transformers" modules are part of GHC and should
not be among the inputs to avoid conflicts.

* gnu/packages/haskell.scm (ghc-streaming-commons)[inputs]: Remove
"ghc-directory" and "ghc-transformers".
2016-10-06 14:18:21 +02:00
Ricardo Wurmus fc47c7d635
gnu: Add r-bsgenome-celegans-ucsc-ce10.
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
2016-10-06 10:33:43 +02:00
Leo Famulari 6a4cbc6f12
gnu: nss-certs and nss: Update to 3.27.1.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.1.
2016-10-05 20:04:50 -04:00
Leo Famulari 22f08f0605
gnu: libxvmc: Update to 1.0.10.
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.10.
[replacement]: Remove field.
(libxvmc/fixed): Remove variable.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:26 -04:00
Leo Famulari 62ad505603
gnu: libxv: Update to 1.0.11.
* gnu/packages/xorg.scm (libxv): Update to 1.0.11.
[replacement]: Remove field.
(libxv/fixed): Remove variable.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:25 -04:00
Leo Famulari 82e6a4341b
gnu: libxtst: Update to 1.2.3.
* gnu/packages/xorg.scm (libxtst): Update to 1.2.3.
[replacement]: Remove field.
(libxtst/fixed): Remove variable.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:25 -04:00
Leo Famulari 9eb76bd3e5
gnu: libxrender: Update to 0.9.10.
* gnu/packages/xorg.scm (libxrender): Update to 0.9.10.
[replacement]: Remove field.
(libxrender/fixed): Remove variable.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-05 19:36:25 -04:00
Leo Famulari 2e81b0b5bf
gnu: libxrandr: Update to 1.5.1.
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.1.
[replacement]: Remove field.
(libxrandr/fixed): Remove variable.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:24 -04:00
Leo Famulari 571fa535cd
gnu: libxi: Update to 1.7.7.
* gnu/packages/xorg.scm (libxi): Update to 1.7.7.
[replacement]: Remove field.
(libxi/fixed): Remove variable.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:24 -04:00
Leo Famulari 3e1ed70f74
gnu: libxfixes: Update to 5.0.3.
* gnu/packages/xorg.scm (libxfixes): Update to 5.0.3.
[replacement]: Remove field.
(libxfixes/fixed): Remove variable.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:24 -04:00
Leo Famulari 4dd841c1dc
gnu: libx11: Update to 1.6.4.
* gnu/packages/xorg.scm (libx11): Update to 1.6.4.
[replacement]: Remove field.
(libx11/fixed): Remove variable.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-05 19:36:24 -04:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 1459476089
gnu: e2fsprogs: Fix typo in comment.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Fix typo in comment.
2016-10-05 18:59:29 -04:00
Leo Famulari 7d45365684
gnu: e2fsprogs: Disable parallel build.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Add #:parallel-build? #f.
2016-10-05 17:41:44 -04:00
Leo Famulari 87312f8aa1
gnu: json-c: Update to 0.12.1.
* gnu/packages/web.scm (json-c): Update to 0.12.1.
2016-10-05 17:38:48 -04:00
Leo Famulari 813062a5f7
gnu: libxvmc: Fix CVE-2016-7953.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxvmc)[replacement]: New field.
(libxvmc/fixed): New variable.
2016-10-05 17:37:23 -04:00
Leo Famulari e73631a906
gnu: libxv: Fix CVE-2016-5407.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxv)[replacement]: New field.
(libxv/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari 1f90b80f8b
gnu: libxtst: Fix CVE-2016-{7951,7952}.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxtst)[replacement]: New field.
(libxtst/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari 666d40193c
gnu: libxrender: Fix CVE-2016-{7949,7950}.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libxrender)[replacement]: New field.
(libxrender/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari a300db1c7f
gnu: libxrandr: Fix CVE-2016-{7947,7948}.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxrandr)[replacement]: New field.
(libxrandr/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari b78ba2274f
gnu: libxi: Fix CVE-2016-{7945,7946}.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxi)[replacement]: New field.
(libxi/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari b50c6bf2a8
gnu: libxfixes: Fix CVE-2016-7944.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxfixes)[replacement]: New field.
(libxfixes/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari 13c10b4ca4
gnu: libx11: Fix CVE-2016-{7942,7943}.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11/fixed): New variable.
2016-10-05 17:37:15 -04:00
ng0 81d5a62fb1
gnu: Remove lispf4.
The package in its current state is unusable and documentation with unclear
licenses is included.

Also, the file 'lispf42.c' (and possible others) is generated C code and
thus not "source code" as we define it.

* gnu/packages/lisp.scm (lispf4): Delete variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-05 16:23:56 -04:00
Tobias Geerinckx-Rice 151df6ab3d
gnu: btrfs-progs: Update to 4.8.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.
2016-10-05 22:07:21 +02:00
Leo Famulari bda45da336
gnu: libass: Update to 0.13.4 [fixes CVE-2016-{7969,7970,7972}.
* gnu/packages/video.scm (libass): Update to 0.13.4.
2016-10-05 16:04:26 -04:00
Efraim Flashner a4796b29e1
gnu: gnucash: Update to 2.6.14.
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.14.
2016-10-05 20:42:49 +03:00
Danny Milosavljevic b04ca7a12b
gnu: Add sunxi-tools.
* gnu/packages/admin.scm (sunxi-tools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-05 18:50:52 +02:00
Leo Famulari 517318adf0
gnu: Add Vc.
* gnu/packages/maths.scm (vc): New variable.
2016-10-05 12:49:41 -04:00
Ludovic Courtès 9d50da7060
gnu: wordnet: Make sure the self-reference is visible to the GC.
Before that, "guix gc --references $(guix build wordnet)" would not show
WordNet itself, erroneously so.

* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -fno-builtin-strcpy
  to #:configure-flags.
2016-10-05 18:35:55 +02:00
Ludovic Courtès 939f87438c
gnu: wordnet: Compile with optimizations.
* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -O2 to
  #:configure-flags.
2016-10-05 18:35:55 +02:00
Kei Kebreau cd1869cdbd
gnu: Add hyperrogue.
* gnu/packages/games.scm (hyperrogue): New variable.
2016-10-05 10:10:36 -04:00
Ludovic Courtès 358db0041f
gnu: grub: Make dependency on mdadm explicit.
* gnu/packages/grub.scm (grub)[arguments]: Path getroot.c in
'patch-stuff' phase.
[inputs]: Add MDADM.
2016-10-05 15:11:08 +02:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686.
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-05 15:11:08 +02:00
Leo Famulari 50948a9026
gnu: git: Update to 2.10.1.
* gnu/packages/version-control.scm (git): Update to 2.10.1.
2016-10-05 01:57:51 -04:00
Ludovic Courtès acbf2c4f60
gnu: guix: Honor the user's 'GUILE_LOAD_PATH'.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use
'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'.
2016-10-04 22:40:46 +02:00
Ludovic Courtès 8cecd22e4a
gnu: Add GoAccess.
* gnu/packages/web.scm (goaccess): New variable.
2016-10-04 17:44:27 +02:00
Ludovic Courtès a9764b7d2e
gnu: pies: Update to 1.3.
* gnu/packages/admin.scm (pies): Update to 1.3.
[arguments]: New field.
2016-10-04 16:38:00 +02:00
Ludovic Courtès 9d3425f24a
gnu: global: Update to 6.5.5.
* gnu/packages/code.scm (global): Update to 6.5.5.
2016-10-04 16:37:59 +02:00
Ludovic Courtès 8c82e1c9d3
gnu: gsl: Update to 2.2.1.
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-04 16:37:59 +02:00
Ludovic Courtès bac67a5a5c
gnu: direvent: Update to 5.1.
* gnu/packages/admin.scm (direvent): Update to 5.1.
[arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and
'testsuite'.
2016-10-04 16:37:59 +02:00
Ludovic Courtès d35f8c7cb6
gnu: gnu-c-manual: Update to 0.2.5.
* gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5.
2016-10-04 16:37:59 +02:00
Ludovic Courtès a884fa2141
gnu: rush: Update to 1.8.
* gnu/packages/rush.scm (rush): Update to 1.8.
[source]: Remove 'patches'.
* gnu/packages/patches/cpio-gets-undeclared.patch,
gnu/packages/patches/rush-CVE-2013-6889.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-10-04 16:37:59 +02:00
Leo Famulari 491dbac415
gnu: cryptsetup: Update to 1.7.2.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2.
[source]: Use kernel mirror.
[home-page]: Update URL.
2016-10-04 10:24:46 -04:00
Ben Woodcroft 2c3eb4b85b
gnu: metabat: Update to 0.32.4-1.cbdca756.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756.
* gnu/packages/patches/metabat-remove-compilation-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-10-04 22:02:52 +10:00
Ludovic Courtès 47c14714a4
gnu: fish: Do not use the bundled PCRE2.
* gnu/packages/shells.scm (fish)[inputs]: Add PCRE2.
2016-10-04 11:26:45 +02:00
Arun Isaac a8d3bc473d
gnu: fish: Add input bc.
Fixes <http://bugs.gnu.org/24433>.

* gnu/packages/shells.scm (fish)[inputs]: Add bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-04 11:26:45 +02:00
Ricardo Wurmus c5d17d50d0
gnu: warzone2100: Update to 3.2.1.
* gnu/packages/games.scm (warzone2100): Update to 3.2.1.
[arguments]: Remove phase "set-sdl-paths", add phase
"link-tests-with-qt", add phase "remove-reference-to-missing-file".
[inputs]: Replace "qt-4" with "qt", replace "sdl-union" with
"sdl2", add "openssl".
2016-10-04 10:21:38 +02:00
Ricardo Wurmus 5c31e981bb
gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".
* gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move
"build-gemspec" phase after "unpack".
2016-10-04 08:54:55 +02:00
Ricardo Wurmus 92a312dc86
gnu: python-pathlib: Disable tests.
* gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests.
2016-10-04 08:54:55 +02:00
Ricardo Wurmus ced12a7bff
gnu: ghmm: Run tests after install.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check"
phase after "install"; add phase "fix-PYTHONPATH".
2016-10-04 08:54:55 +02:00
Ricardo Wurmus 4262d178a7
gnu: raincat: Add missing input.
* gnu/packages/games.scm (raincat)[inputs]: Add freeglut.
2016-10-04 08:48:55 +02:00
Ricardo Wurmus d910d584b7
gnu: supertux: Update to 0.5.0.
* gnu/packages/games.scm (supertux): Update to 0.5.0.
[arguments]: Add flag to disable static boost libraries.
2016-10-04 08:38:09 +02:00
Leo Famulari c88cd83b71
gnu: parallel: Update to 20160922.
* gnu/packages/parallel.scm (parallel): Update to 20160922.
2016-10-03 23:59:29 -04:00
Mark H Weaver 1927839dcb
gnu: linux-libre: Update to 4.8.
* gnu/packages/linux.scm (linux-libre): Update to 4.8.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: Delete files.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-10-03 22:05:51 -04:00
Mark H Weaver e9b718a05a
gnu: nss: Increase build timeout to 60 hours.
* gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to
60 hours.
2016-10-03 22:05:32 -04:00
ng0 6adda006be
gnu: gnunet: Add inputs.
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add perl, jansson, nss, gmp, bluez,
glib, libogg.
[native-inputs]: Move python-2 from here ...
[inputs]: ... to here.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-03 17:43:23 -04:00
Ludovic Courtès 0f7cd95b81
gnu: gctp: 'license' field now has a <license> value.
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
2016-10-03 23:20:23 +02:00
Ludovic Courtès b1cb9f281a
gnu: libgcrypt@1.7: Replacement now has an accurate 'version' field.
* gnu/packages/gnupg.scm (libgcrypt-1.7.3)[version]: New field.
2016-10-03 23:16:48 +02:00
Ludovic Courtès 8389e6f06e
gnu: openssl@1.0: Replacement now has an accurate 'version' field.
* gnu/packages/tls.scm (openssl-1.0.2j)[name, version]: New fields.
2016-10-03 23:16:48 +02:00
Leo Famulari 6524c1cfcf
gnu: libarchive: Incorporate grafted security patches.
* gnu/packages/backup.scm (libarchive)[source]: Add patches from
libarchive/fixed.
[replacement]: Remove field.
(libarchive/fixed): Remove variable.
2016-10-03 17:08:23 -04:00
Leo Famulari 9c2130757c
Merge branch 'master' into core-updates 2016-10-03 17:08:05 -04:00
Leo Famulari b38e97e03b
gnu: libarchive: Fix several security issues.
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2016-10-03 16:52:28 -04:00
Leo Famulari 85358aef8e
gnu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.037.
2016-10-03 14:39:11 -04:00
Ricardo Wurmus d79e8f65b5
gnu: ghc-process: Replace reference to /bin/sh.
* gnu/packages/haskell.scm (ghc-process)[arguments]: Add phases
"patch-reference-to-/bin/sh" to replace reference to /bin/sh.
2016-10-02 17:31:40 +02:00
Ricardo Wurmus 2d47cee25b
gnu: Do not propagate inputs in haskell.scm.
* gnu/packages/haskell.scm
(ghc-streaming-commons)[propagated-inputs]: Move ghc-random...
[inputs]: ...to here; remove ghc-async, add ghc-directory, add
ghc-transformers; move ghc-quickcheck, ghc-hspec...
[native-inputs]: ...to here; add hspec-discover.

(ghc-test-framework)[propagated-inputs]: Move all from here...
[inputs]: ...to here; move ghc-hunit and ghc-quickcheck...
[native-inputs]: ...to here.

(ghc-attoparsec)[propagated-inputs]: Move ghc-scientific...
[inputs]: ...to here; move ghc-quickcheck, ghc-quickcheck-unicode,
ghc-test-framework, ghc-test-framework-quickcheck2, ghc-vector...
[native-inputs]: ...to here.

(ghc-zip-archive)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-hunit from here...
[native-inputs]: ...to here.

(ghc-network-uri)[inputs]: Add ghc-parsec; move ghc-hunit from here...
[native-inputs]: ...to here.
[propagated-inputs]: Remove.

(ghc-wai)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-quickcheck, ghc-hunit, and ghc-hspec from
here...
[native-inputs]: ...to here.  Add hspec-discover.

(ghc-wai-extra)[propagated-inputs]: Remove ghc-hspec and ghc-hunit; move
all other inputs from here...
[inputs]: ...to here.
[native-inputs]: Add hspec-discover, ghc-hspec, and ghc-hunit.

(ghc-resourcet, ghc-xss-sanitize, ghc-parsec, ghc-vector, ghc-http,
ghc-base-compat, ghc-base-orphans, ghc-word8)[inputs]: Move all inputs
from here...
[native-inputs]: ...to here.

(ghc-haddock-library, ghc-hspec-contrib, ghc-base-compat,
ghc-base-orphans, ghc-fast-logger, ghc-word8, ghc-aeson-qq,
ghc-logging-facade, ghc-mockery, ghc-yaml, ghc-hslua)[native-inputs]:
Add hspec-discover.

(ghc-fast-logger)[inputs]: Move ghc-hspec from here...
[native-inputs]: ...to here.

(ghc-data-default,
ghc-data-default-instances-base,
ghc-data-default-instances-containers,
ghc-data-default-instances-dlist,
ghc-haddock-api,
ghc-happy,
ghc-haskell-src-exts,
ghc-resourcet,
ghc-xss-sanitize,
ghc-sdl-mixer,
ghc-sdl-image,
ghc-glut,
ghc-gluraw,
ghc-opengl,
cpphs,
ghc-old-time,
ghc-data-default-instances-old-locale,
cabal-install,
ghc-x11,
ghc-x11-xft,
ghc-hashable,
ghc-test-framework-hunit,
ghc-test-framework,
ghc-tf-random,
ghc-transformers-base,
ghc-unix-time,
ghc-http-types,
ghc-iproute,
ghc-regex-base,
ghc-regex-posix,
ghc-regex-tdfa-rc,
ghc-parsers,
ghc-trifecta,
ghc-distributive,
ghc-comonad,
ghc-polyparse,
ghc-profunctors,
ghc-reducers,
ghc-xml,
ghc-exceptions,
ghc-temporary,
ghc-temporary-rc,
ghc-smallcheck,
ghc-tasty-ant-xml,
ghc-quickcheck-instances,
ghc-quickcheck,
ghc-case-insensitive,
ghc-chasingbottoms,
ghc-unordererd-containers,
ghc-uniplate,
ghc-ansi-wl-pprint,
ghc-parsec,
ghc-vector,
ghc-vector-binary-instances,
ghc-http,
ghc-hspec,
ghc-hspec-contrib,
ghc-hspec-core,
ghc-hspec-meta,
ghc-vault,
ghc-monad-control,
ghc-blaze-builder,
ghc-blaze-markup,
ghc-blaze-html,
ghc-async,
ghc-optparse-applicative,
ghc-charset,
ghc-void,
ghc-kan-extensions,
ghc-statevar,
ghc-lens,
ghc-cheapskate,
ghc-semigroupoids,
ghc-contrvariant,
ghc-semigroups,
ghc-free,
ghc-adjunctions,
ghc-fast-logger,
ghc-doctest,
ghc-lifted-base,
ghc-tasty-quickcheck,
ghc-tasty-golden,
ghc-tasty,
ghc-cookie,
ghc-scientific,
ghc-aeson,
ghc-wai-logger,
ghc-pandoc-types,
ghc-texmath,
ghc-regex-pcre-builtin,
ghc-highlighting-kate,
ghc-cmark,
ghc-enclosed-exceptions,
ghc-th-lift,
ghc-th-expand-syns,
ghc-th-reify-many,
ghc-th-orphans,
ghc-haskell-src-meta,
ghc-aeson-qq,
ghc-conduit,
ghc-mockery,
ghc-yaml,
ghc-filemanip,
ghc-juicypixels,
ghc-hslua,
ghc-mime-types,
ghc-http-client,
ghc-hourglass,
ghc-pem,
ghc-asn1-types,
ghc-asn1-encoding,
ghc-asn1-parse,
ghc-tasty-kat,
ghc-cryptonite,
ghc-x509,
ghc-x509-store,
ghc-x509-validation,
ghc-x509-system,
ghc-tls,
ghc-socks,
ghc-connection,
ghc-http-client-tls,
ghc-pandoc)[propagated-inputs]: Move inputs from here...
[inputs]: ...to here.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus 88cf917b74
gnu: r-plotly: Update to 4.5.2.
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus a3c6445be5
gnu: Add r-purrr.
* gnu/packages/statistics.scm (r-purrr): New variable.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus c6ab73e8ff
gnu: Add r-viridislite.
* gnu/packages/statistics.scm (r-viridislite): New variable.
2016-10-02 17:31:36 +02:00
Mark H Weaver 6a703976f4
gnu: libotf: Fix source URI.
* gnu/packages/fontutils.scm (libotf)[source]: Fix suorce URI.
2016-10-02 10:49:22 -04:00
Ludovic Courtès e543c8a2c6
gnu: bash-minimal: Remove 'move-development-files' phase.
* gnu/packages/bash.scm (bash-minimal)[arguments]: Delete
'move-development-files' phase.
(static-bash)[arguments]: Remove deletion of 'move-development-files'
phase.
2016-10-02 15:16:21 +02:00
Ben Woodcroft 4bdc3df92d
gnu: vsearch: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2.
2016-10-02 22:25:39 +10:00
Efraim Flashner 10bc741619
gnu: ffmpeg: Update to 3.1.4.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.4.
2016-10-02 11:38:32 +03:00
Mark H Weaver 79992a3e6f
gnu: linux-libre: Update to 4.7.6.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.6.
2016-10-01 18:22:43 -04:00
Mark H Weaver 2bfa61c034
gnu: linux-libre@4.4: Update to 4.4.23.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23.
2016-10-01 18:20:28 -04:00
Ricardo Wurmus 09a86196e9
gnu: guitarix: Update to 0.35.1.
* gnu/packages/audio.scm (guitarix): Update to 0.35.1.
2016-10-01 22:31:10 +02:00
Ricardo Wurmus 89fa2219a7
gnu: eigen: Update to 3.2.9.
* gnu/packages/algebra.scm (eigen): Update to 3.2.9.
2016-10-01 21:36:36 +02:00
Ricardo Wurmus d70f5139da
gnu: julia: Update to 0.5.0.
* gnu/packages/julia.scm (libuv-julia): Update to commit
8d5131b6c1595920dd30644cd1435b4f344b46c8.
(libunwind-for-julia): New variable.
(julia): Update to 0.5.0.
[arguments]: Disable stripping of binaries; modify "prepare-deps" phase;
add "fix-llvm-flag" phase; add "set-home" phase; adjust
"hardcode-soname-map" phase; remove fix for "double-conversion" from
"fix-include-and-link-paths" phase; enable "repl" and "replcompletions"
tests; disable "backtrace", "compile", "replutil", and "cmdlineargs"
tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag.
[inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with
"libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia";
update "suitesparse" origin; replace "virtualenv" origin with
"python2-virtualenv".
[native-inputs]: Add "openssl".
2016-10-01 21:36:36 +02:00
Ricardo Wurmus 9b72ce60fb
gnu: utf8proc: Update to 2.0.2.
* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2.
2016-10-01 21:36:35 +02:00
Leo Famulari 917de2511b
gnu: gd: Fix CVE-2016-7568.
* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-01 12:27:37 -04:00
Ludovic Courtès 5bde29685b
gnu: perl: Make builds reproducible again.
* gnu/packages/patches/perl-reproducible-build-date.patch: Add hunks to
set 'myuname', 'cf_time', and 'cf_by' in 'Configure'.
2016-10-01 15:20:08 +02:00
Ben Woodcroft 156c0810e9
gnu: perl: Enable threading support.
* gnu/packages/perl.scm (perl)[arguments]: Configure with '-Dusethreads'.
* gnu/packages/commencement.scm (perl-boot0)[arguments]: Omit inherited
'-Dusethreads' flag during configure.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-01 14:34:33 +02:00
Ben Woodcroft 56ee1d2015
gnu: perl: Use configure-flags.
* gnu/packages/perl.scm (perl)[arguments]: Use configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-01 14:34:31 +02:00
Ludovic Courtès 8d29bfa9fc
gnu: bash-minimal: Disable loadable module support.
* gnu/packages/bash.scm (bash-minimal)[arguments]: Add
'ac_cv_func_dlopen=no' to #:configure-flags.
2016-10-01 12:15:02 +02:00
Ludovic Courtès 712b62d8f7
gnu: make-boot0: Use 'install-file'.
* gnu/packages/commencement.scm (gnu-make-boot0)[arguments]: Use
'install-file' in 'install' phase instead of 'copy-file' etc.
2016-10-01 11:55:09 +02:00
Ludovic Courtès 8e5e8724d2
gnu: make-boot0: Use 'modify-phases'.
* gnu/packages/commencement.scm (gnu-make-boot0)[arguments]: Use
'modify-phases'.
2016-10-01 11:55:09 +02:00
Ivan Vilata i Balaguer 37356e0bf8
gnu: Add quickswitch-i3.
* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:56:11 +08:00
Ivan Vilata i Balaguer c165591d47
gnu: Add python-i3-py.
* gnu/packages/wm.scm (python-i3-py, python2-i3-py): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:44:44 +08:00
ng0 f1b61e26ae
gnu: Add emacs-rudel.
* gnu/packages/emacs.scm (emacs-rudel): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:22:31 +08:00
宋文武 df0e8a239b
gnu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'.
* gnu/packages/password-utils.scm (shroud)[arguments]: New field.
2016-10-01 08:50:48 +08:00
Leo Famulari ebb9b9a60c
gnu: tmux: Update to 2.3.
* gnu/packages/tmux.scm (tmux): Update to 2.3.
2016-09-30 19:49:08 -04:00
Ludovic Courtès c573f5a5a5
gnu: bash: Update to 4.4.
* gnu/packages/bash.scm (%patch-series-4.3): Remove.
(%patch-series-4.4): New variable.
(bash)[source]: Update to 4.4.
[native-inputs]: Remove.
[arguments]: Remove (ice-9 regex) modules; add (srfi srfi-26).
Inline 'install-sh-symlink' phase.  Remove 'install-headers' phase.  Add
'move-development-files' phase.
[native-search-paths]: New field.
(static-bash)[outputs]: New field.
[arguments]: Delete 'move-development-files' phase.
* gnu/packages/commencement.scm (static-bash-for-glibc)
(bash-final): Remove 'native-inputs'.
2016-10-01 00:00:03 +02:00
Ludovic Courtès a7a1cf2948
gnu: bash-static: Use 'modify-phases'.
* gnu/packages/bash.scm (static-bash)[arguments]: Use 'modify-phases'.
2016-10-01 00:00:02 +02:00
Ludovic Courtès 0c64d8564f
gnu: readline: Update to 7.0.
* gnu/packages/readline.scm (readline): Update to 7.0.
2016-10-01 00:00:02 +02:00
Ludovic Courtès 42d1e525bc
gnu: texinfo: Update to 6.3.
* gnu/packages/texinfo.scm (texinfo): Update to 6.3.
(texinfo-6.3): Remove.
2016-09-30 12:06:46 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Leo Famulari bddf22b99e
gnu: libreoffice: Update to 5.1.5.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.
2016-09-30 01:17:24 -04:00
Danny Milosavljevic cfb7e269e9
gnu: xonsh: Remove bundled PLY.
* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-29 17:13:05 -04:00
Julien Lepiller 86d8f6d3ef
services: Add 'openssh-service'.
* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 23:11:48 +02:00
Arun Isaac 01c5c21a67
gnu: emacs: Build with m17n support.
* gnu/packages/emacs.scm (emacs): Build with m17n support.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
Arun Isaac a80b60f484
gnu: Add m17n-lib.
* gnu/packages/emacs.scm (m17n-lib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
Arun Isaac 154c71e003
gnu: Add m17n-db.
* gnu/packages/emacs.scm (m17n-db): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:32 +02:00
Leo Famulari 0da1b7062a
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-09-29 11:18:52 -04:00
David Craven b9f7895d39
Revert "gnu: %default-extra-linux-options: Remove redundant options."
Options aren't redundant and are required for building the initrd.

This reverts commit 50dbc03647.
2016-09-29 12:59:37 +02:00
Ludovic Courtès d06ce0466f
gnu: dbus-c++: License has "or later" clause.
* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
2016-09-29 09:01:22 +02:00
Ludovic Courtès 39d6b9c99f
gnu: linux-pam@1.2: Remove erroneous 'name' field.
* gnu/packages/linux.scm (linux-pam-1.2)[name]: Remove.
2016-09-28 23:03:00 +02:00
Rene Saavedra 411264c250
gnu: linux-pam: Allow compilation on GNU/Hurd.
* gnu/packages/patches/linux-pam-no-setfsuid.patch: New file.
* gnu/packages/linux.scm (linux-pam)[source]: Use it.
(linux-pam-1.2)[source]: Likewise.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 23:01:49 +02:00
Ludovic Courtès 789f09a073
gnu: binutils: Work around Bash 4.2 bug.
Fixes a 'binutils-cross-boot0' build failure on mips64el.

Reported at
<https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01083.html>.

* gnu/packages/patches/binutils-mips-bash-bug.patch: New file.
* gnu/packages/base.scm (binutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-28 22:44:38 +02:00
Ricardo Wurmus 2320e76b82
gnu: sra-tools: Fix build on i686.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
2016-09-28 22:30:41 +02:00
Efraim Flashner 37042a0fb4
gnu: tilda: Update to 1.3.3.
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
2016-09-28 21:38:38 +03:00
Stefan Reichoer 1d51585573
gnu: Add xonsh.
* gnu/packages/shells.scm (xonsh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-28 13:42:06 -04:00
Leo Famulari b2fe918302
gnu: attic: Superseded by borg.
* gnu/packages/backup.scm (attic)[properties]: New field.
2016-09-28 13:07:06 -04:00
Taylan Ulrich Bayırlı/Kammer 415ee287fa
gnu: nestopia-ue: Update to version 1.47. 2016-09-28 17:00:35 +02:00
Taylan Ulrich Bayırlı/Kammer dac65f90b6
gnu: higan: Update to version 101.
* gnu/packages/games.scm (higan): Update to version 101.
2016-09-28 17:00:12 +02:00
Alex Kost 9e01589469
gnu: gettext: Install Emacs tools.
Fixes <http://bugs.gnu.org/24442>.
Reported by Ivan Vilata i Balaguer <ivan@selidor.net>.

* gnu/packages/gettext.scm (gnu-gettext)[native-inputs]: Add 'emacs'.
[arguments]: Add 'add-emacs-autoloads' phase.
2016-09-28 17:54:50 +03:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal.
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
2016-09-28 17:54:50 +03:00
Thomas Danckaert b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'.
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-28 21:23:47 +08:00
David Craven 7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant.
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.

* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
2016-09-28 12:40:12 +02:00
David Craven e4e9c0a083
gnu: make-linux-libre: Install device tree files.
* gnu/packages/linux.scm (make-linux-libre): Install device tree files.
2016-09-28 12:40:12 +02:00
David Craven 50dbc03647
gnu: %default-extra-linux-options: Remove redundant options.
* gnu/packages/linux.scm (%default-extra-linux-options): Remove
  redundant options.
2016-09-28 12:40:12 +02:00
David Craven 33619c3ae0
gnu: Add sdcc.
* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-28 12:40:12 +02:00
David Craven a3af70aca8
gnu: Add picocom.
* gnu/packages/terminals.scm (picocom): New variable.
2016-09-28 12:40:12 +02:00
Lukas Gradl 615c999055
gnu: opendht: Propagate msgpack.
* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:45:02 +02:00
Lukas Gradl 974aaf71e5
gnu: telephony: Add 'license:' prefix.
* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:25:34 +02:00
Lukas Gradl 9a4c032cc4
gnu: Add gsm.
* gnu/packages/audio.scm (gsm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:14:42 +02:00
Lukas Gradl 89eb7581a4
gnu: Add dbus-c++.
* gnu/packages/glib.scm (dbus-c++): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:08:33 +02:00
Leo Famulari a7c9b062ad
gnu: libressl: Update to 2.5.0.
* gnu/packages/tls.scm (libressl): Update to 2.5.0.
2016-09-27 20:40:39 -04:00
Tobias Geerinckx-Rice ffabdc185c
gnu: encfs: Update to 1.9.1.
* gnu/packages/crypto.scm (encfs): Update to 1.9.1.
2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice 9da3c49837
gnu: btrfs-progs: Update to 4.7.3.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice 8c120e4f3b
gnu: zip: Use 'modify-phases'.
* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
2016-09-28 00:20:30 +02:00
Leo Famulari 8be2428e85
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
2016-09-27 15:19:14 -04:00
Leo Famulari cc132e0f38
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].
* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
2016-09-27 15:19:14 -04:00
Stefan Reichoer e8c9b01090
gnu: Add python-q.
* gnu/packages/python.scm (python-q, python2-q): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 14:54:58 -04:00
Leo Famulari b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:49:49 -04:00
Thomas Danckaert 32f70e1f86
gnu: Add gctp.
* gnu/packages/maths.scm (gctp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:37:46 -04:00
ng0 3973e137f0
gnu: Add gloox.
* gnu/packages/messaging.scm (gloox): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:31:18 -04:00
ng0 419fb3f1ac
gnu: femtolisp: Don't build on mips64el or armhf.
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field,
remove support for mips64el and armhf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 12:29:35 -04:00
Andy Wingo e9070933bf
gnu: Add gobby.
* gnu/packages/gobby.scm (gobby): New variable.
2016-09-27 14:46:10 +02:00
Andy Wingo 22a3cff3c8
gnu: Add obby.
* gnu/packages/gobby.scm (obby): New variable.
2016-09-27 14:46:10 +02:00
Andy Wingo c8105e811b
gnu: Add libnet6.
* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-09-27 14:46:10 +02:00
Andy Wingo b61d962723
gnu: Add libxml++-2.
* gnu/packages/gnome.scm (libxml++-2): New variable.
2016-09-27 14:46:10 +02:00
Efraim Flashner a777535cd7
gnu: aria2: Update to 1.27.1.
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
2016-09-27 14:52:48 +03:00
Ben J Woodcroft 99caa6f75f
gnu: python-plastid: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
2016-09-27 20:07:12 +10:00
Ben J Woodcroft 67f66812f5
gnu: Add python-termcolor.
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
2016-09-27 20:07:02 +10:00
Marius Bakke f536dce522
gnu: python-pysam: Enable tests.
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
2016-09-27 20:06:00 +10:00
Marius Bakke dff26b2363
gnu: python-pysam: Delete bundled htslib.
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
2016-09-27 20:06:00 +10:00
Marius Bakke 397d463a12
gnu: python-pysam: Use 'modify-phases'.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
2016-09-27 20:06:00 +10:00
Marius Bakke bdc7be59eb
gnu: Add bcftools.
* gnu/packages/bioinformatics.scm (bcftools): New variable.
2016-09-27 20:06:00 +10:00
Marius Bakke e301bfc886
gnu: python2-pbcore: Update to 1.2.10.
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
2016-09-27 20:06:00 +10:00
Marius Bakke c2efe1aea8
gnu: Add python-pyxb.
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
2016-09-27 20:06:00 +10:00
Marius Bakke fd49eb213f
gnu: python-pysam: Update to 0.9.1.4.
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
2016-09-27 20:05:57 +10:00
Leo Famulari 9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
2016-09-26 17:09:08 -04:00
Leo Famulari 8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
2016-09-26 17:09:05 -04:00
Danny Milosavljevic 58478cc1cb
gnu: libftdi: Propagate the libusb input.
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-26 14:30:37 -04:00
Ricardo Wurmus 675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
2016-09-26 14:30:59 +02:00
Ricardo Wurmus bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2.
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
2016-09-26 14:30:59 +02:00
Ricardo Wurmus 5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5.
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1.
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 8f1e2dca55
gnu: ghc-highlighting-kate: Update to 0.6.3.
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus ae87e4fcde
gnu: ghc-pandoc-types: Update to 1.16.1.1.
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 1da48e4302
gnu: ghc-tagsoup: Update to 0.14.
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 1a545a1e7c
gnu: tbb: Fail on test errors.
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
2016-09-26 14:30:58 +02:00
Ricardo Wurmus ba4529c4f7
gnu: ghc-tls: Update to 1.3.8.
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
2016-09-26 14:30:57 +02:00
Ricardo Wurmus 7f5ca399bf
gnu: tbb: Use modify-phases syntax.
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
2016-09-26 14:30:57 +02:00
Ben Woodcroft af8de20386
gnu: vsearch: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
2016-09-26 20:35:32 +10:00
Ricardo Wurmus 204adc3017
gnu: azr3: Fix libsigc++ build errors.
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-26 10:47:58 +02:00
Ricardo Wurmus 3ef08dceb3
gnu: qtractor: Update to 0.7.9.
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
2016-09-26 08:16:13 +02:00
Ricardo Wurmus f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
  New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus 684f29bd2e
gnu: Add r-grohmm.
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus 7f903d7300
gnu: Add r-systempiper.
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus cb99d457f0
gnu: Add r-shortread.
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus 89f40c5e4e
gnu: Add r-gostats.
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus 1a1931f7e0
gnu: Add r-category.
* gnu/packages/bioinformatics.scm (r-category): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus ad740ff818
gnu: Add r-gseabase.
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
2016-09-26 07:47:53 +02:00
Ricardo Wurmus cd9e7dc7ff
gnu: Add r-rbgl.
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
2016-09-26 03:25:23 +02:00
Ricardo Wurmus e816377374
gnu: Add r-annotationforge.
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
2016-09-26 03:25:17 +02:00
Ricardo Wurmus 9e330278ee
gnu: Add r-batchjobs.
* gnu/packages/statistics.scm (r-batchjobs): New variable.
2016-09-26 03:25:11 +02:00
Ricardo Wurmus dc4fb16d25
gnu: Add r-fail.
* gnu/packages/statistics.scm (r-fail): New variable.
2016-09-26 03:25:06 +02:00
Ricardo Wurmus cd26ec3bbf
gnu: Add r-bbmisc.
* gnu/packages/statistics.scm (r-bbmisc): New variable.
2016-09-26 03:25:02 +02:00
Ricardo Wurmus 929d4aaea1
gnu: Add r-checkmate.
* gnu/packages/statistics.scm (r-checkmate): New variable.
2016-09-26 03:24:59 +02:00
Ricardo Wurmus 0d90462fa3
gnu: Add r-backports.
* gnu/packages/statistics.scm (r-backports): New variable.
2016-09-26 03:24:55 +02:00
Ricardo Wurmus 8e1bfc7e8c
gnu: Add r-sendmailr.
* gnu/packages/statistics.scm (r-sendmailr): New variable.
2016-09-26 03:24:50 +02:00
Ricardo Wurmus 0c77fd50f8
gnu: Add r-pheatmap.
* gnu/packages/statistics.scm (r-pheatmap): New variable.
2016-09-26 03:24:44 +02:00
Ricardo Wurmus 092197a548
gnu: Add r-matrix.
* gnu/packages/statistics.scm (r-matrix): New variable.
2016-09-26 03:21:32 +02:00
Ricardo Wurmus ad34f0ac96
gnu: Add r-deseq2.
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2016-09-26 03:21:27 +02:00
Ricardo Wurmus 2301fd3e4d
gnu: Add r-genefilter.
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2016-09-26 03:21:19 +02:00
Ricardo Wurmus 2d21d44dbd
gnu: Add r-hmisc.
* gnu/packages/statistics.scm (r-hmisc): New variable.
2016-09-26 03:21:13 +02:00
Ricardo Wurmus 07a664cde0
gnu: Add r-geneplotter.
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
2016-09-26 03:21:07 +02:00
Ricardo Wurmus 8c6de58849
gnu: Add r-annotate.
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
2016-09-26 03:20:59 +02:00
Ricardo Wurmus 2213730c5b
gnu: Add r-rpart.
* gnu/packages/statistics.scm (r-rpart): New variable.
2016-09-26 03:20:52 +02:00
Ricardo Wurmus 356c6d61a6
gnu: Add r-rjson.
* gnu/packages/web.scm (r-rjson): New variable.
2016-09-26 03:20:44 +02:00
Ricardo Wurmus bbed0ab6b4
gnu: Add r-hwriter.
* gnu/packages/web.scm (r-hwriter): New variable.
2016-09-26 03:20:19 +02:00
Ricardo Wurmus 57a31efb4b
gnu: tcc: Disable build on MIPS.
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
2016-09-26 03:01:06 +02:00
Arun Isaac 9311722703
gnu: Add optipng.
* gnu/packages/image.scm (optipng): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-25 16:53:00 -04:00
Alex Vong 217f3fdfe6
gnu: openldap: Use gnutls.
* gnu/packages/openldap.scm (openldap)[inputs]: Switch to gnutls.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-25 22:25:02 +03:00
Ricardo Wurmus 7acd71d13d
gnu: epiphany: Drop NSS and libwnck.
These dependencies were dropped in Epiphany 3.21.x.

* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
2016-09-25 13:04:00 +02:00
Ricardo Wurmus 9f58932ecc
gnu: epiphany: Update to 3.22.0.
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
2016-09-25 13:04:00 +02:00
Ricardo Wurmus 58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3.
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
2016-09-25 13:04:00 +02:00
Mark H Weaver 1535c0a6b6
gnu: linux-libre: Update to 4.7.5.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
2016-09-25 03:57:57 -04:00
Mark H Weaver dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
2016-09-25 03:55:37 -04:00
John Darrington 94c5dc8c03
gnu: Add pam-krb5
* gnu/packages/admin.scm (pam-krb5): New variable.
2016-09-25 06:40:29 +02:00
Ben Woodcroft 9f2989b6cc
gnu: perl: Split configure phase.
* gnu/packages/perl.scm (perl)[arguments]: Split 'configure' phase into
'setup-configure' and 'configure' phases.
2016-09-25 10:09:00 +10:00
Efraim Flashner a8f3d49280
gnu: privoxy: Update to 3.0.26.
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
2016-09-24 23:09:14 +03:00
Efraim Flashner 0ab57b0d04
gnu: tor: Update to 0.2.8.8.
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
2016-09-24 22:27:16 +03:00
宋文武 b5b5105c3d
gnu: xorg-server: Set default font path to empty.
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass
"--with-default-font-path=" to #:configure-flags.
2016-09-24 14:28:09 +08:00
ng0 6fc48c2ee2
gnu: Add gforth.
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-09-24 14:07:12 +08:00
Rene Saavedra 54021cd8c6
gnu: Add gnome-calculator.
* gnu/packages/gnome.scm (gnome-calculator): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-24 00:51:52 -04:00
Erik Edrosa 8058880017
gnu: Add cmark.
* gnu/packages/markdown.scm (cmark): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 20:56:51 -04:00
ng0 93666cf783
gnu: Add enet.
* gnu/packages/networking.scm (enet): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:18:10 -04:00
Danny Milosavljevic 03ddad84ba
gnu: flashrom: Update to 0.9.9
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:03:19 -04:00
ng0 0f5de84e98
gnu: Add nickle.
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 18:54:24 -04:00
Efraim Flashner 047cd01d11
gnu: orpheus: Use 'modify-phases'.
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
2016-09-23 17:38:25 +03:00
Efraim Flashner 5bd6270211
gnu: orpheus: Fix build on mips64el.
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
2016-09-23 17:38:24 +03:00
Nicolas Goaziou 236d522b80
gnu: giac-xcas: Update to 1.2.2-81.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 09:57:20 -04:00
Ricardo Wurmus 8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable.
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
2016-09-23 13:13:41 +02:00
Ricardo Wurmus 646a84338d
gnu: sra-tools: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
2016-09-23 11:46:53 +02:00
Ricardo Wurmus 40974c933e
gnu: ncbi-vdb: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
2016-09-23 11:46:26 +02:00
Ricardo Wurmus 48b419ebd6
gnu: ngs-sdk: Update to 1.2.5.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
2016-09-23 11:45:24 +02:00
Ricardo Wurmus 4781820147
gnu: randomjungle: Only build on x86_64 and i686.
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
2016-09-23 08:23:51 +02:00
Efraim Flashner fc3b2cbb04
gnu: retroarch: Update to 1.3.6.
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
2016-09-23 09:02:03 +03:00
Ricardo Wurmus 5989d4eaac
gnu: synfig: Fix isnan error.
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
2016-09-23 07:45:16 +02:00
Eric Bavier 56f33f3fd5
gnu: ccache: Upgrade to 3.3.1.
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
2016-09-22 23:56:17 -05:00
Eric Bavier bd368c7174
gnu: ccache: Use modify-phases.
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
2016-09-22 23:43:20 -05:00
Eric Bavier 1a0ae573c7
gnu: boost: Add -j for build.
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
2016-09-22 22:34:04 -05:00
Eric Bavier 6941965526
gnu: boost: Upgrade to 1.61.0.
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
2016-09-22 22:33:37 -05:00
ng0 71b611bc34
gnu: Add ghc-transformers-0.4.2.0.
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:01 -04:00
ng0 10a03d6665
gnu: Add ghc-system-fileio.
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 23feb6e4fb
gnu: Add ghc-system-filepath.
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 58c85b1f82
gnu: Add ghc-options.
* gnu/packages/haskell.scm (ghc-options): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 c92d944c1e
gnu: Add ghc-chell-quickcheck.
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 475d366866
gnu: Add ghc-chell-quickcheck-bootstrap.
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 8ea94489fd
gnu: Add ghc-chell.
* gnu/packages/haskell.scm (ghc-chell): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 7e06c4aa98
gnu: Add ghc-options-bootstrap.
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 25b3bdb5ff
gnu: Add ghc-shelly.
* gnu/packages/haskell.scm (ghc-shelly): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap.
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap.
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 2b41f4afc1
gnu: Add ghc-lifted-async.
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 6aab9ba6d4
gnu: Add ghc-constraints.
* gnu/packages/haskell.scm (ghc-constraints): New variable.
2016-09-22 20:09:58 -04:00
ng0 e7e2f03c8f
gnu: Add ghc-array.
* gnu/packages/haskell.scm (ghc-array): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 3db882776b
gnu: Add ghc-graphviz.
* gnu/packages/haskell.scm (ghc-graphviz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 d4cca6b0ae
gnu: Add ghc-fgl-arbitrary.
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 ce242fd05e
gnu: ghc-fgl: Update to 5.5.3.0.
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.5.3.0.
[inputs]: Add ghc-hspec and ghc-quickcheck.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 6e0741f739
gnu: Add ghc-wl-pprint-text.
* gnu/packages/haskell.scm (ghc-wl-pprint-text): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 3b281f5b8d
gnu: Add ghc-process.
* gnu/packages/haskell.scm (ghc-process): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 4fec5cdbf4
gnu: Add ghc-directory.
* gnu/packages/haskell.scm (ghc-directory): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 e1a56bb258
gnu: Add ghc-colour.
* gnu/packages/haskell.scm (ghc-colour): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 1d9db656c9
gnu: Add ghc-bytestring.
* gnu/packages/haskell.scm (ghc-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 41167bd255
gnu: Add ghc-monads-tf.
* gnu/packages/haskell.scm (ghc-monads-tf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 d52ca22ac3
gnu: Add ghc-patience.
* gnu/packages/haskell.scm (ghc-patience): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 027b79762a
gnu: Add ghc-findbin.
* gnu/packages/haskell.scm (ghc-findbin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 54c37341d1
gnu: Add ghc-transformers.
* gnu/packages/haskell.scm (ghc-transformers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 f827033102
gnu: Add ghc-tar.
* gnu/packages/haskell.scm (ghc-tar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 a71f861752
gnu: Add ghc-bytestring-handle.
* gnu/packages/haskell.scm (ghc-bytestring-handle): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 e9e519be76
gnu: Add ghc-sandi.
* gnu/packages/haskell.scm (ghc-sandi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 ab12bd3a04
gnu: Add ghc-tasty-th.
* gnu/packages/haskell.scm (ghc-tasty-th): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 fe3c62c7d5
gnu: Add ghc-regex-compat-tdfa.
* gnu/packages/haskell.scm (ghc-regex-compat-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 7e444dba6e
gnu: Add ghc-regex-tdfa.
* gnu/packages/haskell.scm (ghc-regex-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 d58dc851f9
gnu: Add ghc-regex-applicative.
* gnu/packages/haskell.scm (ghc-regex-applicative): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 1a0dbf0ded
gnu: Add ghc-haskeline.
* gnu/packages/haskell.scm (ghc-haskeline): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 7c14128dd0
gnu: Add ghc-data-ordlist.
* gnu/packages/haskell.scm (ghc-data-ordlist): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 c763b8ae89
gnu: Add ghc-cryptohash.
* gnu/packages/haskell.scm (ghc-cryptohash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 eddc69241b
gnu: ghc-cryptonite: Update to 0.19.
* gnu/packages/haskell.scm (ghc-cryptonite): Update to 0.19.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
ng0 301e762ad1
gnu: Add ghc-binary.
* gnu/packages/haskell.scm (ghc-binary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
ng0 cc5e16a764
gnu: Add ghc-base16-bytestring.
* gnu/packages/haskell.scm (ghc-base16-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
Leo Famulari 67fa6ab5bb
gnu: imagemagick: Update to 6.9.5-10.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-10.
2016-09-22 20:09:51 -04:00
Efraim Flashner 5895f193c9
gnu: reptyr: Remove mips64el support.
* gnu/packages/screen.scm (reptyr)[supported-systems]: New field, remove
support for mips64el.
2016-09-22 22:42:47 +03:00
Efraim Flashner cda5e76f51
gnu: python2-django: Fix typo in native-inputs.
* gnu/packages/django.scm (python2-django)[native-inputs]: Inherit from
python-django's native-inputs, not its inputs.
2016-09-22 22:42:47 +03:00
Efraim Flashner 7adc698f69
gnu: python-fake-factory: Update to 0.7.2.
* gnu/packages/python.scm (python-fake-factory): Update to 0.7.2.
[arguments]: Remove phase disabling failing test.
[home-page]: Use https.
2016-09-22 22:42:46 +03:00
Efraim Flashner 0dbb7ac2df
gnu: plink: Set endian-ness on more architectures.
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-09-22 22:42:37 +03:00
John Darrington c788c5feb1
gnu: Add ytalk
* gnu/packages/messaging.scm (ytalk): New variable.
2016-09-22 21:07:33 +02:00
Leo Famulari 163d93a6bd
gnu: openssl-next: Update to 1.1.0a [security fixes].
Fixes CVE-2016-{6304,6305,6307,6308}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0a.
[replacement]: New field.
2016-09-22 13:45:54 -04:00
Leo Famulari 50f701d4f9
gnu: openssl: Replace with 1.0.2i [security fixes].
Fixes CVE-2016-{2177,2178,2179,2180,2181,2182,2183,6302,6303,6304,6306,6308}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2i): New variable.
2016-09-22 13:45:54 -04:00
Efraim Flashner 62d00095c2
gnu: prank: Allow building on 32-bit machines.
* gnu/packages/bioinformatics.scm (prank)[arguments]: Add a phase
removing the '-m64' compiler flag.
2016-09-22 19:21:16 +03:00
Mark H Weaver a143e1b877
gnu: webkitgtk: Update to 2.14.0.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.0.
2016-09-22 11:59:58 -04:00
Efraim Flashner b8367c0090
gnu: offlineimap: Update to 7.0.7.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.7.
2016-09-22 11:19:11 +03:00
Ben Woodcroft 951da521a9
gnu: diamond: Update to 0.8.22.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.22.
2016-09-22 16:36:00 +10:00
ng0 c5776c87bb
gnu: perl-io-socket-ssl: Update to 2.038.
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.038.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 01:44:50 -04:00
Leo Famulari 1df00601b2
gnu: irssi: Update to 0.8.20 [fixes CVE-2016-{7044,7045}].
* gnu/packages/irc.scm (irssi): Update to 0.8.20.
2016-09-22 00:38:13 -04:00
Ricardo Wurmus 39162ee49b
gnu: extempore: Only build on x86_64.
* gnu/packages/algebra.scm (kiss-fft-for-extempore)[supported-systems]:
Only build on x86_64.
* gnu/packages/gl.scm (nanovg-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/image.scm (stb-image-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/llvm.scm (llvm-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/music.scm (portmidi-for-extempore)[supported-systems]:
Likewise.
(extempore)[supported-systems]: Likewise.
2016-09-21 21:47:56 +02:00
Ricardo Wurmus b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
Ricardo Wurmus 3f1c722ec7
gnu: r-htmltools: Ensure temporary files can be deleted.
* gnu/packages/web.scm (r-htmltools)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
Efraim Flashner 538c0e3b69
gnu: openlibm: Remove support for mips.
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
2016-09-21 22:36:52 +03:00
Efraim Flashner 6e8faf7794
gnu: jellyfish: Limit to x86_64.
* gnu/packages/bioinformatics.scm (jellyfish)[supported-systems}: New
field, limit support to x86_64.
2016-09-21 22:36:52 +03:00
ng0 f7fe5f7a3e
gnu: femtolisp: Remove custom "patch-makefile" phase.
* gnu/packages/lisp.scm (femtolisp)[arguments]: Remove
"patch-makefile" phase; specify test target; build "release"
target instead of "default".
2016-09-21 21:28:52 +02:00
Andreas Enge 171091a874
gnu: lm-sensors: Update to 3.4.0.
* gnu/packages/linux.scm (lm-sensors): Update to 3.4.0.
2016-09-21 19:20:22 +02:00
Ben Woodcroft 79558df220
gnu: vsearch: Update to 2.1.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.0.
2016-09-21 18:44:22 +10:00
Ben Woodcroft 375f224b68
gnu: python-click: Use 'pypi-uri'.
* gnu/packages/python.scm (python-click, python2-click)[source]: Use
'pypi-uri'.
2016-09-21 11:58:39 +10:00
Ben Woodcroft e2ab5a0904
gnu: python-click: Hardlink path to 'locale'.
* gnu/packages/python.scm (python-click, python2-click)[arguments]: New
field.
2016-09-21 11:54:15 +10:00
Tobias Geerinckx-Rice f75bb2c3f2
gnu: simple-scan: Update to 3.22.0.1.
* gnu/packages/gnome.scm (simple-scan): Update to 3.22.0.1.
2016-09-21 01:15:57 +02:00
Alex Vong 8824da4c8b
gnu: vlc: Use liba52.
* gnu/packages/video.scm (vlc)[inputs]: Add liba52.
[arguments]: Remove "--disable-a52" from #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 15:54:18 -04:00
Efraim Flashner c84253f757
gnu: chez-scheme: Remove arm support.
* gnu/packages/scheme.scm (chez-scheme)[supported-systems]: Remove arm.
2016-09-20 22:04:15 +03:00
doncatnip 22037a327a
gnu: awesome: Update to 3.5.9.
* gnu/packages/wm.scm (awesome): Update to 3.5.9.
[inputs]: Add gobject-introspection, lua-lgi, cairo. Use latest available lua.
[arguments]: Set lua search paths. Add cairo to LD_LIBRARY_PATH. Wrap binary in
respect to those paths plus GI_TYPELIB_PATH.
2016-09-20 14:58:33 -04:00
doncatnip 03d8505f14
gnu: lua: Add lua-lgi.
* gnu/packages/lua.scm (lua-lgi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:32 -04:00
doncatnip c0d47cadea
gnu: lua: Use MYCFLAGS instead of CFLAGS.
* gnu/packages/lua.scm (lua)[arguments]: Use MYCFLAGS instead of
CFLAGS and remove conflicting -DLUA_USE_POSIX since -DLUA_USE_LINUX
is passed implicitly for build target "linux".

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:29 -04:00
Efraim Flashner e6d58734b6
gnu: chess: Update to 6.2.3.
* gnu/packages/games.scm (chess): Update to 6.2.3.
2016-09-20 21:41:14 +03:00
Dylan Jeffers b04a52a6ff
gnu: Add python-requests-oauthlib.
* gnu/packages/python.scm (python-requests-oauthlib,
python2-requests-oauthlib): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-20 21:27:56 +03:00
John Darrington be86b7adbc
gnu: Add bind
* gnu/packags/dns.scm (bind): New variable, (bind-utils): Remove.
2016-09-20 18:55:52 +02:00
Efraim Flashner 92330ba90d
gnu: efl: Remove hardcoding pulseaudio and libsndfile.
* gnu/packages/enlightenment.scm (efl)[arguments]: Remove custom phase
to hardlink to the locations of pulseaudio and libsndfile.
2016-09-20 11:32:08 +03:00
Mark H Weaver 846b2534df
gnu: emacs: Update to 25.1.
* gnu/packages/emacs.scm (emacs): Update to 25.1.
2016-09-19 23:45:25 -04:00
Mark H Weaver 6509a1e1e0
gnu: linux-libre: Update to 4.7.4.
* gnu/packages/linux.scm (linux-libre)
(%linux-libre-version, %linux-libre-hash): Update to 4.7.4.
2016-09-19 18:42:29 -04:00
Mark H Weaver a8b9c575aa
gnu: linux-libre@4.4: Update to 4.4.21.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.21.
2016-09-19 18:40:59 -04:00
Mark H Weaver 55ac38f986
gnu: linux-libre@4.1: Update to 4.1.33.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.33.
2016-09-19 18:37:22 -04:00
Nicolas Goaziou 006a832ccb
gnu: emacs-org: Update to 20160912.
* gnu/packages/emacs.scm (emacs-org): Update to 20160912.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-19 23:35:48 +03:00
Efraim Flashner 8120205ccd
gnu: python2-cov-core: Use strip-python2-variant.
* gnu/packages/python.scm (python-cov-core)[properties]: New field,
declare python2-variant.
(python2-cov-core): Use strip-python2-variant.
2016-09-19 23:25:01 +03:00
Leo Famulari d404a6f971
gnu: gnupg: Fix test failure.
* gnu/packages/patches/gnupg-fix-expired-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg): Use it.
2016-09-19 16:09:56 -04:00
Hartmut Goebel dfdaea32e9
gnu: python-django, python2-django: Fix propagated- and native-inputs.
setuptools is a run-time dependency (sic!), all others are required
for testing only.

* gnu/packages/django.scm (python-django) [propagated-inputs,
  native-inputs]: Exchange them. Move tzdata to new native-inputs.
  Enhance comments.
  (python2-django) [propagated-inputs] change into native-inputs.
  Enhance comment.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-19 23:41:23 +09:00
Efraim Flashner bf307a7a54
gnu: efl: Add recommended build flags.
* gnu/packages/enlightenment.scm (efl)[inputs]: Add libwebp.
[arguments]: Add configure-flags to enable xinput22, image-loader-webp,
multisense, opengl with egl support.
2016-09-19 15:46:34 +03:00
Efraim Flashner 5de2a99e79
gnu: efl: Update to 1.18.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.1.
2016-09-19 15:46:33 +03:00
Efraim Flashner 6f27fbd807
gnu: ffmpeg@2.8: Update to 2.8.8.
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.8.
2016-09-19 15:46:26 +03:00
宋文武 6b87c10f58
gnu: Add Mr. Rescue.
* gnu/packages/games.scm (mrrescue): New variable.
2016-09-19 19:24:18 +08:00
Roel Janssen eb24341ffb
gnu: Add r-biocinstaller.
* gnu/packages/bioinformatics.scm (r-biocinstaller): New variable.
2016-09-19 11:56:44 +02:00
ng0 c2c84add54
gnu: racket: Update to 6.6
* gnu/packages/scheme.scm (racket): Update to 6.6.
2016-09-19 11:53:30 +02:00
Ben Woodcroft de96ea286d
gnu: python-biom-format: Move inputs to propagated-inputs.
* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format)
[inputs]: Move all from here ...
[propagated-inputs]: ... to here.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 7bba95b769
gnu: seqmagick: Use BioPython 1.66.
* gnu/packages/bioinformatics.scm (seqmagick)[inputs]: Use
python2-biopython-1.66 instead of python2-biopython.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 4b1a152826
gnu: Add python2-biopython-1.66.
* gnu/packages/bioinformatics.scm (python2-biopython-1.66): New variable.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 8c8da1389e
gnu: python-biopython: Use 'python2-variant'.
* gnu/packages/bioinformatics.scm (python-biopython)[properties]: New field.
[native-inputs]: Remove field.
(python-biopython): Use 'strip-python-variant'.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 4ce6030588
gnu: python-biopython: Update to 1.68.
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.68.
[arguments]: New field.
2016-09-19 15:44:18 +10:00
Nicolas Goaziou ded5d02bd0
gnu: wireshark: Update to 2.2.0.
* gnu/packages/networking.scm (wireshark): Update to 2.2.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-18 21:03:48 -04:00
Efraim Flashner c4605e4c97
gnu: onionshare: Fix build.
This commit is a follow-up to b8ea5204ab.

* gnu/packages/tor.scm: Add 'gpl3+' to guix-licenses import, Add
python-build-system.
(onionshare)[licenses]: Remove license namespace.
2016-09-18 23:27:36 +03:00
Efraim Flashner b8ea5204ab
gnu: Add onionshare.
* gnu/packages/tor.scm (onionshare): New variable.
* gnu/packages/patches/onionshare-fix-install-paths.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-18 23:19:46 +03:00
Efraim Flashner d488d5d65b
gnu: Add python-nautilus.
* gnu/packages/python.scm (python-nautilus): New variable.
2016-09-18 23:19:46 +03:00
Efraim Flashner 153e58c568
gnu: Add python-bcrypt.
* gnu/packages/password-utils.scm (python-bcrypt): New variable.
2016-09-18 23:19:46 +03:00
Efraim Flashner 0aea283a65
gnu: Add python-nose2.
* gnu/packages/python.scm (python-nose2): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 12f839fdf6
gnu: Add python-cov-core.
* gnu/packages/python.scm (python-cov-core): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 257023978a
gnu: Add python-consul.
* gnu/packages/python.scm (python-consul): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner ddc63a5611
gnu: Add python-graphene.
* gnu/packages/python.scm (python-graphene): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 894810c7c9
gnu: Add python-django-filter.
* gnu/packages/django.scm (python-django-filter): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 23b563dcfd
gnu: Add python-pytest-django.
* gnu/packages/django.scm (python-pytest-django): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner de2966cfe8
gnu: Add python-sqlalchemy-utils.
* gnu/packages/python.scm (python-sqlalchemy-utils): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 7ee5157579
gnu: Add python-graphql-relay.
* gnu/packages/python.scm (python-graphql-relay): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 05b7a59336
gnu: Add python-graphql-core.
* gnu/packages/python.scm (python-graphql-core): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 44547e5153
gnu: Add python-pytest-mock.
* gnu/packages/python.scm (python-pytest-mock): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 5cb2fe446b
gnu: Add python-promise.
* gnu/packages/python.scm (python-promise): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 4d98bfaf23
gnu: Add python-peewee.
* gnu/packages/databases.scm (python-peewee): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 4d3fa5a421
gnu: Add python-pika.
* gnu/packages/python.scm (python-pika): New variable.
2016-09-18 23:19:43 +03:00
Efraim Flashner bff8be80c9
gnu: xorriso: Update to 1.4.6.
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.6.
2016-09-18 23:14:02 +03:00
Efraim Flashner 0bb9461506
gnu: autoconf-archive: Update to 2016.09.16.
* gnu/packages/autotools.scm (autoconf-archive): Update to 2016.09.16.
2016-09-18 18:10:10 +03:00
John Darrington e4360e16f9
gnu: gtk+ use modify-phases
* gnu/packages/gtk.scm (arguments): Replace alist-cons-before with modify-phases
2016-09-18 14:42:26 +02:00
John Darrington 5d87088c39
gnu: Add sendmail
* gnu/packages/mail.scm (sendmail): New variable.
2016-09-18 09:40:44 +02:00
Stefan Reichoer 4efb9c5478
gnu: Add python-glances.
* gnu/packages/python.scm (python-glances, python2-glances): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-17 19:17:54 -04:00
Leo Famulari 082138e953
gnu: diffoscope: Update to 60.
* gnu/packages/package-management.scm (diffoscope): Update to 60.
2016-09-17 19:02:42 -04:00
Rene Saavedra 6aeaba8917
gnu: gnome-session: Update to 3.20.2.
* gnu/packages/gnome.scm (gnome-session): Update to 3.20.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-17 17:01:00 -04:00
John Darrington 8f65585b14
doc: "filesystem" -> "file system"
* doc/guix.texi: "filesystem" -> "file system"
* gnu/packages/admin.scm: "filesystem" -> "file system"
* gnu/packages/cdrom.scm: "filesystem" -> "file system"
* gnu/packages/compression.scm: "filesystem" -> "file system"
* gnu/packages/disk.scm: "filesystem" -> "file system"
* gnu/packages/gnome.scm: "filesystem" -> "file system"
* gnu/packages/irc.scm: "filesystem" -> "file system"
* gnu/packages/linux.scm: "filesystem" -> "file system"
* gnu/packages/mail.scm: "filesystem" -> "file system"
* gnu/packages/mpd.scm: "filesystem" -> "file system"
* gnu/packages/ocaml.scm: "filesystem" -> "file system"
* gnu/packages/perl.scm: "filesystem" -> "file system"
* gnu/packages/python.scm: "filesystem" -> "file system"
* gnu/packages/search.scm: "filesystem" -> "file system"
* gnu/packages/tls.scm: "filesystem" -> "file system"
* gnu/services/mail.scm: "filesystem" -> "file system"
2016-09-16 18:16:13 +02:00
Ricardo Wurmus 9159562441
gnu: Add Extempore.
* gnu/packages/music.scm (extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 38098bf7b4
gnu: Add portmidi-for-extempore.
* gnu/packages/music.scm (portmidi-for-extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 2a9b10c7cd
gnu: Add kiss-fft-for-extempore.
* gnu/packages/algebra.scm (kiss-fft-for-extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 921cb13a96
gnu: Add llvm-for-extempore.
* gnu/packages/llvm.scm (llvm-for-extempore): New variable.
* gnu/packages/patches/llvm-for-extempore.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus ac2a38a59a
gnu: Add stb-image-for-extempore.
* gnu/packages/image.scm (stb-image-for-extempore): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus 5a82f933f3
gnu: Add assimp.
* gnu/packages/graphics.scm (assimp): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus 78acbcb53f
gnu: Add nanovg-for-extempore.
* gnu/packages/gl.scm (nanovg-for-extempore): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus c533589c66
gnu: Add r-e1071.
* gnu/packages/statistics.scm (r-e1071): New variable.
2016-09-16 17:29:48 +02:00
Ricardo Wurmus c72c12491a
gnu: Add r-rtsne.
* gnu/packages/statistics.scm (r-rtsne): New variable.
2016-09-16 17:29:48 +02:00
Brendan Tildesley f6875394a6
gnu: Add par2cmdline.
* gnu/packages/backup.scm (par2cmdline): New variable.
2016-09-15 22:39:31 -05:00
Tobias Geerinckx-Rice 7f39e13180
gnu: prosody: Don't generate example SSL certificates.
They are non-deterministic and of questionable utility.

* gnu/packages/messaging.scm (prosody)[arguments]: Add #:configure-flags.
2016-09-16 01:54:00 +02:00
Tobias Geerinckx-Rice 9bd259d82d
gnu: polipo: Use 'modify-phases'.
* gnu/packages/web.scm (polipo)[arguments]: Use 'modify-phases'.
2016-09-16 01:54:00 +02:00
Tobias Geerinckx-Rice 60880ac556
gnu: iodine: Use net-tools' ifconfig with an absolute path.
* gnu/packages/networking.scm (iodine)[arguments]: Add fix-ifconfig-path
phase.
[inputs]: Add net-tools.
2016-09-16 01:53:51 +02:00
Tobias Geerinckx-Rice 71af71dc74
gnu: hexchat: Update to 2.12.1.
* gnu/packages/messaging.scm (hexchat): Update to 2.12.1.
[inputs]: Add luajit.
[description]: Wrap to <=80 characters.
2016-09-16 01:49:13 +02:00
Tobias Geerinckx-Rice dd65f3b744
gnu: Add mcelog.
* gnu/packages/linux.scm (mcelog): New variable.
2016-09-16 01:49:13 +02:00
David Craven 25847b327e
gnu: kernel-config: Find configuration file for i686.
* gnu/packages/linux.scm (kernel-config): Find configuration file for
  i686.
  (make-linux-libre)[origin]: Apply patch correctly.
2016-09-15 21:57:51 +02:00
Ludovic Courtès 4a187c556d
gnu: chibi-scheme: Use 'modify-phases'.
* gnu/packages/scheme.scm (chibi-scheme)[arguments]: Use
'modify-phases'.
2016-09-15 18:56:41 +02:00
Arun Isaac 797a5cf57f
gnu: Add darkhttpd.
* gnu/packages/web.scm (darkhttpd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-15 11:23:01 -04:00
Vincent Legoll d002121b5e
gnu: nss-certs and nss: Update to 3.26
* gnu/packages/certs.scm (nss-certs): Update to 3.26.
* gnu/packages/gnuzilla.scm (nss): Update to 3.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-15 09:43:09 -04:00
宋文武 ab179eaf98
gnu: Add gnome-dictionary.
* gnu/packages/gnome.scm (gnome-dictionary): New variable.
2016-09-15 15:48:26 +08:00
Marius Bakke 5467ea6200
gnu: Add python-natsort.
* gnu/packages/python.scm (python-natsort, python2-natsort): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:56:02 -04:00
Marius Bakke df94a6b57d
gnu: Add python-pytest-flakes.
* gnu/packages/python.scm (python-pytest-flakes, python2-pytest-flakes):
  New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:56:02 -04:00
Marius Bakke 66f95b209a
gnu: Add python-pytest-pep8.
* gnu/packages/python.scm (python-pytest-pep8, python2-pytest-pep8): New
  variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:55:58 -04:00
ng0 74c0282c45
gnu: Add mhonarc.
* gnu/packages/mail.scm (mhonarc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 17:32:07 -04:00
ng0 991847748a
gnu: gnurl: Update to 7.50.3.
* gnu/packages/gnunet.scm (gnurl): Update to 7.50.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 16:38:08 -04:00
Jan Nieuwenhuizen 253745d756
gnu: hydra: Update to 20151030.1ff48da.
* gnu/packages/ci.scm (hydra): Update to 20151030.1ff48da (fixes building with
nix-1.11.x).
[source]: Remove 'hydra-automake-1.15.patch'.
[inputs]: Add libpqxx and perl-net-statsd.
* gnu/packages/patches/hydra-automake-1.15.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:07 -04:00
Jan Nieuwenhuizen fe71eee076
gnu: Add libpqxx.
* gnu/packages/databases.scm (libpqxx): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 16c6a01e3f
gnu: Add perl-net-statsd.
* gnu/packages/perl.scm (perl-net-statsd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 49735d8de1
gnu: perl-image-magick: Disable tests.
* gnu/packages/imagemagick.scm (perl-image-magick)[arguments]: Add #:tests?.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 2792a6b470
gnu: perl-gd: Disable tests.
* gnu/packages/gd.scm (perl-gd)[arguments]: Add #:tests?.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:02 -04:00
Efraim Flashner 6ea541e016
gnu: links: Use 'modify-phases'.
* gnu/packages/links.scm (links)[arguments]: Use 'modify-phases'.
2016-09-14 22:04:50 +03:00
Efraim Flashner 7ddacf88ef
gnu: links: Update to 2.13.
* gnu/packages/links.scm (links): Update to 2.13.
2016-09-14 22:02:40 +03:00
Leo Famulari 2a0ed3254b
gnu: curl: Update replacement to 7.50.3 [fixes CVE-2016-7167].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.50.3.
(curl-7.50.2): Replace with ....
(curl-7.50.3): ... this.
2016-09-14 14:12:04 -04:00
Leo Famulari b5b2c11b5e
gnu: mariadb: Update to 10.1.17 [fixes CVE-2016-6662 ].
* gnu/packages/databases.scm (mariadb): Update to 10.1.17.
2016-09-14 13:52:19 -04:00
Leo Famulari 362bc747a2
gnu: mysql: Update to 5.7.15 [fixes CVE-2016-6662].
* gnu/packages/databases.scm (mysql): Update to 5.7.15.
[source]: Remove obsolete 'mysql-fix-failing-test.patch'.
* gnu/packages/patches/mysql-fix-failing-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-09-14 13:52:18 -04:00
David Thompson ddda5338b8
gnu: guile-next: Update to 2.1.4.
* gnu/packages/guile.scm (guile-next): Update to 2.1.4.
2016-09-14 11:14:47 -04:00
Christopher Baines 8bebe734ca
gnu: Add emacs-es-mode.
* gnu/packages/emacs.scm (emacs-es-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-14 16:36:38 +02:00
Tobias Geerinckx-Rice 271447ff8e
gnu: Remove unused, obsolete, private rlog.
* gnu/packages/crypto.scm (rlog): Remove variable.
2016-09-14 13:02:53 +02:00
Tobias Geerinckx-Rice b6f87ec003
gnu: encfs: Update to 1.9.
* gnu/packages/crypto.scm (encfs): Update to 1.9.
[source]: Remove bundled TinyXML2 in a snippet.
[build-system]: Switch to cmake-build-system.
[arguments]: Remove autotools-related phases and configure-flags.
Don't use bundled TinyXML2. Move under *inputs.
[native-inputs]: Remove autoconf, automake, libtool, and pkg-config.
Add expect.
[inputs]: Remove boost and rlog, while adding attr and tinyxml2.
[license]: Add expat licence for new easylogging++.h file.
2016-09-14 13:02:53 +02:00
Tobias Geerinckx-Rice 931bd7f6ce
gnu: Add tinyxml2.
* gnu/packages/xml.scm (tinyxml2): New variable.
2016-09-14 13:02:53 +02:00
Christopher Baines 76f31f0b2c
gnu: Add direnv.
* gnu/packages/shellutils.scm (direnv): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-14 15:47:19 +08:00
Ricardo Wurmus 85313be89d
gnu: Add guile2.2-redis.
* gnu/packages/guile.scm (guile2.2-redis): New variable.
2016-09-14 09:01:26 +02:00
Ricardo Wurmus ea833d301b
gnu: guile-redis: Remove hard-coded Guile effective version.
* gnu/packages/guile.scm (guile-redis)[snippet]: Modify 'ac_subst_vars'
in 'configure', and use "@GUILE_EFFECTIVE_VERSION@" instead of "2.0" in
'Makefile.in'.
2016-09-14 09:01:21 +02:00
Leo Famulari b1a782b11a
gnu: expat: Update to 2.2.0.
* gnu/packages/xml.scm (expat): Update to 2.2.0.
[source]: Use 'expat-CVE-2016-0718-fix-regression.patch'. Remove obsolete
patches.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch,
gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Add and remove patches.
2016-09-13 20:37:33 -04:00
David Craven d6feaf6e8f
gnu: kernel-config: Remove redundant file-exists? check.
* gnu/packages/linux.scm (kernel-config): Remove redundant file-exists?
  check.
2016-09-13 22:48:00 +02:00
David Craven 0b75986983
gnu: make-linux-libre: Only use configuration-file when one is provided.
* gnu/packages/linux.scm (make-linux-libre): Only use configuration-file
  when one is provided.
2016-09-13 22:48:00 +02:00
ng0 995e5092d8
gnu: Add femtolisp.
* gnu/packages/lisp.scm (femtolisp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 15:38:00 -04:00
Danny Milosavljevic 812b3c1f8a
gnu: ldc: Fix build failure.
* gnu/packages/ldc.scm (ldc)[arguments]: Add 'patch-dmd2' phase.
[inputs]: Add zlib.
[native-inputs]: Specify version 3.7 of LLVM and Clang.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 15:24:55 -04:00
John Darrington f26dd9b2cc
gnu: Add microcom
* gnu/packages/microcom.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-13 21:05:13 +02:00
David Craven 035d359338
gnu: module-init-tools: Move to (gnu packages linux).
* gnu/packages/linux.scm (module-init-tools): Move.
2016-09-13 21:01:27 +02:00
David Craven cff0adec0c
gnu: libnfsidmap: Move to (gnu packages linux).
* gnu/packages/linux.scm (libnfsidmap): Move.
2016-09-13 21:01:27 +02:00
David Craven de459dc095
gnu: Add linux-libre-beagle-bone-black.
* gnu/packages/linux.scm (linux-libre-beagle-bone-black): New variable.
2016-09-13 21:01:27 +02:00
David Craven cde7c23f15
gnu: Add linux-libre-arm-generic.
* gnu/packages/linux.scm (linux-libre-arm-generic): New variable.
2016-09-13 21:01:27 +02:00
David Craven 78edccccaf
gnu: linux-libre: Use kmod.
* gnu/packages/linux.scm (make-linux-libre): Use kmod.
2016-09-13 21:01:27 +02:00
David Craven 3129b9c2b1
gnu: make-linux-libre: Add supported-systems parameter.
* gnu/packages/linux.scm (make-linux-libre): Add supported-systems
  parameter.
2016-09-13 21:01:27 +02:00
David Craven fd6e0de3c0
gnu: make-linux-libre: Add zImage to output.
* gnu/packages/linux.scm (make-linux-libre): Add zImage to output.
2016-09-13 21:01:27 +02:00
David Craven a6d0132514
gnu: make-linux-libre: Add extra-version parameter.
* gnu/packages/linux.scm (make-linux-libre): Add extra-version option.
2016-09-13 21:01:27 +02:00
David Craven 90c18c321e
gnu: make-linux-libre: Add extra-options parameter.
* gnu/packages/linux.scm (linux-libre): Use
  %default-extra-linux-options.
  (config->string, %default-extra-linux-options): New variables.
2016-09-13 21:01:27 +02:00
David Craven c258807a85
gnu: Use make-linux-libre.
* gnu/packages/linux.scm (make-linux-libre): New variable.
  (linux-libre, linux-libre-4.4, linux-libre-4.1): Use make-linux-libre.
  (kernel-config): Take arch instead of system.
2016-09-13 21:01:27 +02:00
ng0 0a1d8596fd
gnu: lispf4: Remove unused inputs key.
* gnu/packages/lisp.scm (lispf4)[arguments]: Remove unused
inputs key from 'install' phase.
[source](file-name): Append "-checkout" to the file-name.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 15:00:02 -04:00
David Craven 8feb56b0d4
gnu: u-boot-vexpress_ca9x4: Rename to u-boot-vexpress.
* gnu/packages/u-boot.scm (u-boot-vexpress_ca9x4): Rename.
2016-09-13 19:04:43 +02:00
David Craven 20f9c6764c
gnu: Add u-boot-beagle-bone-black.
* gnu/packages/u-boot.scm (u-boot-beagle-bone-black): New variable.
2016-09-13 19:04:43 +02:00
Danny Milosavljevic e42a0771b7
gnu: dtc: Remove patch-paths phase.
* gnu/packages/u-boot.scm (dtc)[arguments]: Remove patch-paths phase.
  [configure-flags]: Add INSTALL.

Signed-off-by: David Craven <david@craven.ch>
2016-09-13 19:04:43 +02:00
Danny Milosavljevic 243db8245e
gnu: Add python-lit, python2-lit.
* gnu/packages/python.scm (python-lit, python2-lit): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 12:41:44 -04:00
Tobias Geerinckx-Rice d15e2ef05a
gnu: python-prompt-toolkit: Update to 1.0.7.
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.7.
[source]: Use 'pypi-uri'.
2016-09-13 17:03:42 +02:00
Tobias Geerinckx-Rice c033c1958d
gnu: ruby: Remove string-append call with single argument.
* gnu/packages/ruby.scm (ruby)[source]: Remove string-append.
2016-09-13 16:48:44 +02:00
Tobias Geerinckx-Rice 05077200f7
gnu: tinyxml: Fix typo in description.
* gnu/packages/xml.scm (tinyxml)[description]: Fix typo.
2016-09-13 16:48:44 +02:00
David Craven 4b42703ed5
gnu: linux-libre: Add support for cross-compilation.
* gnu/packages/linux.scm (linux-libre): Add support for
  cross-compilation.
2016-09-13 16:45:41 +02:00
David Craven 9416459b72
gnu: linux-libre: Move kernel configuration to configure phase.
* gnu/packages/linux.scm (linux-libre)[arguments]: Add configure phase.
2016-09-13 16:45:41 +02:00
David Craven 499fb7e0ba
gnu: linux-libre: Apply %boot-logo patch in origin.
* gnu/packages/linux.scm (linux-libre)[origin]: Apply %boot-logo patch
  in origin.
2016-09-13 16:45:41 +02:00
David Craven 6d7ef2aad2
gnu: linux-libre: Use system->architecture.
* gnu/packages/linux.scm (linux-libre): Use system->architecture.
2016-09-13 16:45:41 +02:00
David Craven 614d1738e2
gnu: linux-libre: Use modify-phases.
* gnu/packages/linux.scm (linux-libre): Use modify-phases.
2016-09-13 16:45:41 +02:00
David Craven 885009c5b9
gnu: module-init-tools: Prevent line wrapping.
* gnu/packages/linux.scm (module-init-tools): Break line.
2016-09-13 16:45:41 +02:00
Kei Kebreau 89bcf3fcc9
gnu: Add schismtracker.
* gnu/packages/music.scm (schismtracker): New variable.
2016-09-13 10:31:40 -04:00
Alex ter Weele 23de5cbd14
gnu: guile-wm: Add '.desktop' file.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Add
'install-xsession' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 14:01:27 +02:00
Ben J Woodcroft 66daf78c0a
gnu: Add seqtk.
* gnu/packages/bioinformatics.scm (seqtk): New variable.
2016-09-13 20:27:29 +10:00
Andy Patterson 6c0cd765c0
gnu: libbluray: Enable libaacs and libbdplus support.
* gnu/packages/video.scm (libbluray) [inputs]: Add libaacs and
libbdplus.
[arguments]: Add 'fix-dlopen-paths' to #:phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 10:26:35 +02:00
Andy Patterson 8dd6fc5164
gnu: Add libaacs.
* gnu/packages/video.scm (libaacs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 10:26:35 +02:00
Andy Patterson 4df0762248
gnu: Add libbdplus.
* gnu/packages/video.scm (libbdplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-13 10:26:35 +02:00
Marius Bakke 4fba38db9c
gnu: dlib: Disable failing tests.
* gnu/packages/machine-learning.scm (dlib)[arguments]: Add phase
'disable-failing-tests' for tests that are known not to work in the current
release.
[inputs]: Add lapack.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
Marius Bakke 8eaf53e366
gnu: dlib: Do not build dlib twice for tests.
* gnu/packages/machine-learning.scm (dlib)[arguments]: Use makefile
instead of cmake in check phase to prevent full rebuild.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
Marius Bakke f40841e999
gnu: dlib: Remove unused fftw from inputs.
* gnu/packages/machine-learning.scm (dlib)[inputs]: Remove fftw.
(define-module): Don't include algebra.scm.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
Leo Famulari 883d0a7d25
gnu: openblas: Update to 0.2.19.
* gnu/packages/maths.scm (openblas): Update to 0.2.19.
2016-09-13 00:50:13 -04:00
Ivan Vilata-i-Balaguer d2262d7052
gnu: python-py3status: Update to 3.1.
* gnu/packages/python.scm (python-py3status): Update to 3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-12 16:48:44 -04:00
Efraim Flashner 4f6ec7e800
gnu: youtube-dl: Update to 2016.09.11.1.
* gnu/packages/video.scm (youtube-dl): Update to 2016.09.11.1.
2016-09-12 22:34:24 +03:00
Efraim Flashner f34365b53e
gnu: mpv: Remove extra input.
* gnu/packages/video.scm (mpv)[inputs]: Remove vapoursynth.
2016-09-12 22:31:15 +03:00
Efraim Flashner 9a078f4863
gnu: vapoursynth: Remove mips support.
* gnu/packages/video.scm (vapoursynth)[supported-systems]: New field,
remove support for mips64el which is unsupported.
2016-09-12 22:29:35 +03:00
Efraim Flashner f51940b0f5
gnu: vim: Make builds bit-reproducable.
* gnu/packages/vim.scm (vim)[arguments]: Remove the compiled date.
2016-09-12 21:54:05 +03:00
Efraim Flashner db3cc007e3
gnu: vim: Update to 8.0.
* gnu/packages/vim.scm (vim): Update to 8.0.
[arguments]: Update files which need /bin/sh patched.
2016-09-12 21:54:04 +03:00
Leo Famulari 2642231b39
gnu: bowtie: Update to 2.2.9.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.9.
2016-09-12 14:19:37 -04:00
Leo Famulari d8a1be6328
gnu: certbot: Improve synopsis.
* gnu/packages/tls.scm (certbot)[synopsis]: Add authorship information.
2016-09-12 13:05:42 -04:00
Leo Famulari 0581c273a4
gnu: Add acme-client.
* gnu/packages/tls.scm (acme-client): New variable.
2016-09-12 13:05:42 -04:00
Leo Famulari 974e2b2971
gnu: gnutls: Replace with 3.5.4 [fixes GNUTLS-SA-2016-3].
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls-3.5.4): New variable.
2016-09-12 12:30:33 -04:00
Ludovic Courtès e7e43727ce
gnu: gcc: Work around ARM bootstrapping failure (GCC bug #71399).
* gnu/packages/patches/gcc-arm-bug-71399.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.9)[source]: Use it.
2016-09-12 18:20:50 +02:00
John Darrington e9aba1ea33
gnu: Add nfs-utils
* gnu/packages/nfs.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-12 18:17:57 +02:00
Ricardo Wurmus d108c21228
gnu: r-org-mm-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.3.0.
2016-09-12 17:44:49 +02:00
Ricardo Wurmus 6ab7ca24f2
gnu: r-org-dm-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 019be09060
gnu: r-org-ce-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5cc7cff6ef
gnu: r-org-hs-eg-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 401528b2b5
gnu: r-go-db: Update to 3.3.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.3.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 87a7c55ebd
gnu: r-rmarkdown: Update to 1.0.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.0.
[propagated-inputs]: Add "r-jsonlite" and "r-base64enc".
2016-09-12 17:44:48 +02:00
Ricardo Wurmus de1eebd7d7
gnu: r-dplyr: Update to 0.5.0.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.5.0.
2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus 1b7f85f52d
gnu: r-tidyr: Update to 0.6.0.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.0.
2016-09-12 17:44:47 +02:00
Ricardo Wurmus c3253ce1b5
gnu: r-irlba: Update to 2.1.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.1.
2016-09-12 17:44:47 +02:00