Commit Graph

29159 Commits

Author SHA1 Message Date
Mark H Weaver 090e3768e8
gnu: linux-libre: Update to 4.18.6.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.6.
(%linux-libre-hash): Update hash.
2018-09-07 21:05:14 -04:00
Mark H Weaver 4be8fdd3cc
gnu: linux-libre@4.14: Update to 4.14.68.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.68.
(%linux-libre-4.14-hash): Update hash.
2018-09-07 21:03:03 -04:00
Mark H Weaver ddb419ce04
gnu: linux-libre@4.9: Update to 4.9.125.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.125.
2018-09-07 21:02:30 -04:00
Mark H Weaver 48d17ba1d3
gnu: linux-libre@4.4: Update to 4.4.154.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.154.
2018-09-07 21:01:48 -04:00
Ludovic Courtès 9f1f200c04
gnu: diffoscope: Update to 100.
* gnu/packages/package-management.scm (diffoscope): Update to 100.
2018-09-07 17:59:16 +02:00
Ludovic Courtès afdd1555c4
gnu: indent: Add version 2.2.12.
* gnu/packages/code.scm (indent-2.2.12): New variable.
2018-09-07 17:57:04 +02:00
Ludovic Courtès 6b4f99102c
gnu: gdb: Update to 8.2.
* gnu/packages/gdb.scm (gdb): Update to 8.2.
2018-09-07 17:55:55 +02:00
Ludovic Courtès 15214828a5
gnu: guile-json: Update to 1.2.0.
* gnu/packages/guile.scm (guile-json): Update to 1.2.0.
[license]: Change to GPL3+.
2018-09-07 17:55:51 +02:00
pimi 214452ffd3
gnu: Add r-ggformula.
* gnu/packages/cran.scm (r-ggformula): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi c61f7bc543
gnu: Add r-mosaiccore.
* gnu/packages/cran.scm (r-mosaiccore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi 77b33e0ede
gnu: Add r-ggstance.
gnu/packages/cran.scm (r-ggstance): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi 12da2a5e58
gnu: Add r-abctools.
* gnu/packages/cran.scm (r-abctools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi cadc10a513
gnu: Add r-abcrf.
* gnu/packages/cran.scm (r-abcrf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi 40c10917bc
gnu: Add r-abcp2.
* gnu/packages/cran.scm (r-abcp2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
Alex Branham 12498b59e7
gnu: emacs-ess: Update to 17.11.
* gnu/packages/emacs.scm (emacs-ess): Update to 17.11
[url]: Use github for https
[snippet]: update julia-mode substitution, only build info doc, bypass failing test
[propagated-inputs]: Add emacs-julia-mode
[description]: Mention that ESS supports Julia and JAGS (which replaces OpenBUGS)
[arguments]: Remove 'set-home' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
Ludovic Courtès b03f270e3d
gnu: guile: Remove "share/guile/site" from GUILE_LOAD_COMPILED_PATH.
.go files should always go to lib/guile/2.x/site-ccache, and in
practice, we no longer have packages that don't do that.

* gnu/packages/guile.scm (guile-2.2)[native-search-paths]: Remove
"share/guile/site/2.2" from GUILE_LOAD_COMPILED_PATH spec.
(guile-2.0)[native-search-paths]: Likewise.
2018-09-07 10:47:52 +02:00
Tobias Geerinckx-Rice 0012e0dd56
gnu: knot: Update to 2.7.2.
* gnu/packages/dns.scm (knot): Update to 2.7.2.
2018-09-07 03:01:40 +02:00
Leo Famulari 91cc2a38de
gnu: Wireshark: Update to 2.6.3 [fixes CVE-2018-{14994,16056,16057,16058}].
* gnu/packages/networking.scm (wireshark): Update to 2.6.3.
2018-09-06 17:05:42 -04:00
Leo Famulari 1e066f0706
gnu: curl: Update replacement to 7.61.1 [fixes CVE-2018-14618].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.61.1.
(curl-7.61.0): Replace variable with ...
(curl-7.61.1): ... new variable.
2018-09-06 17:02:52 -04:00
Kei Kebreau 21f5f351fb
gnu: libgme: Update to 0.6.2.
* gnu/packages/music.scm (libgme): Update to 0.6.2.
[native-inputs]: Add gcc-4.9.
2018-09-06 11:01:52 -04:00
Eric Brown f66be84d08
gnu: gfortran, gcc-objc, gcc-objc++: Add version 8.
* gnu/packages/gcc.scm (gfortran-8, gcc-objc-8, gcc-objc++-8): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-06 11:12:40 +02:00
Ludovic Courtès b290a631a0
gnu: guile-present: Install .go files to libdir.
* gnu/packages/plotutils.scm (guile-present)[source](modules, snippet):
Remove.
2018-09-06 10:49:42 +02:00
Ludovic Courtès 89874fd156
gnu: guile-charting: Install .go files to libdir.
* gnu/packages/plotutils.scm (guile-charting)[source](modules, snippet):
Remove.
2018-09-06 10:48:44 +02:00
Ludovic Courtès b3ca2d8883
gnu: hpcguix-web: Update to 9ff40fc.
* gnu/packages/web.scm (hpcguix-web): Update to 9ff40fc.
[arguments]: In 'wrap-program' phase, add guile-gcrypt, guile-git, and
guile-bytestructures to DEPS.
2018-09-06 10:46:07 +02:00
Ludovic Courtès 96d6c41dfa
gnu: guile-commonmark: Install .go files to libdir.
* gnu/packages/guile.scm (guile-commonmark)[source](snippet): Change the
"modir = " and "godir = " line separately, allowing .go files to be
installed to $(libdir).
2018-09-06 10:43:01 +02:00
Ricardo Wurmus d53aeeafcc
Add missing use-modules clause.
This is a follow-up to commit 5dfe491290.
Sorry!

* gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages
bioconductor).
2018-09-06 04:53:32 +02:00
Tobias Geerinckx-Rice 79b283e433
gnu: ccache: Update to 3.4.3.
* gnu/packages/ccache.scm (ccache): Update to 3.4.3.
[arguments]: Remove obsolete 'munge-failing-test' phase.
2018-09-06 02:33:47 +02:00
Tobias Geerinckx-Rice d83477adf9
gnu: font-fira-code: Update to 1.205.
* gnu/packages/fonts.scm (font-fira-code): Update to 1.205.
2018-09-06 02:33:47 +02:00
Tobias Geerinckx-Rice a5c70c2e0e
gnu: libmpdclient: Update to 2.15.
* gnu/packages/mpd.scm (libmpdclient): Update to 2.15.
2018-09-06 02:33:47 +02:00
Ricardo Wurmus 00a43cb81c
gnu: pigx-scrnaseq: Use latest version of Pandoc.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus c2b4f81e51
gnu: pigx-bsseq: Use latest version of Pandoc.
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus 7cd40c8c5d
gnu: pigx-chipseq: Use latest version of Pandoc.
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus ca248f1db9
gnu: pigx-rnaseq: Use latest version of Pandoc.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus dff5640a59
gnu: r-rcas: Use standard version of ghc-pandoc-citeproc.
* gnu/packages/bioinformatics.scm (r-rcas)[native-inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus f33a4748b7
gnu: r-modelmetrics: Update to 1.2.0.
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0.
[propagated-inputs]: Add r-data-table.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus 0d279d607a
gnu: r-robustbase: Update to 0.93-2.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus 8e499d756a
gnu: r-rann: Update to 2.6.
* gnu/packages/statistics.scm (r-rann): Update to 2.6.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus 314e8e763f
gnu: r-ggthemes: Update to 4.0.1.
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1.
[propagated-inputs]: Remove r-assertthat and r-colorspace; add r-purrr,
r-stringr, and r-tibble.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus e5db6890ad
gnu: r-ztable: Update to 0.2.0.
* gnu/packages/statistics.scm (r-ztable): Update to 0.2.0.
[propagated-inputs]: Add r-flextable, r-magrittr, r-moonbook, r-officer,
r-rcolorbrewer, r-scales, and r-stringr.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus f0519c8fae
gnu: r-zoo: Update to 1.8-3.
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-3.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 8da236a377
gnu: r-gtools: Update to 3.8.1.
* gnu/packages/statistics.scm (r-gtools): Update to 3.8.1.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus c28d8d8db0
gnu: r-kernlab: Update to 0.9-27.
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus c0608f815c
gnu: r-adaptivesparsity: Update to 1.6.
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6.
[propagated-inputs]: Add r-mass and r-matrix.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus a207bca2ad
gnu: r-codedepends: Move from cran to bioconductor.
* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 5dfe491290
gnu: r-graph: Move from bioinformatics to bioconductor.
* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus caaec88651
gnu: r-ggpubr: Update to 0.1.8.
* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8.
[propagated-inputs]: Add r-glue and r-polynom.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus a9b02ddd73
gnu: r-codedepends: Update to 0.6.5.
* gnu/packages/cran.scm (r-codedepends): Update to 0.6.5.
[propagated-inputs]: Add r-graph.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 2e6909baf0
gnu: r-later: Update to 0.7.4.
* gnu/packages/cran.scm (r-later): Update to 0.7.4.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 12132229b0
gnu: r-maptools: Update to 0.9-3.
* gnu/packages/cran.scm (r-maptools): Update to 0.9-3.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 7a96c4e0a0
gnu: r-fnn: Update to 1.1.2.1.
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 19950821d7
gnu: r-heatmaply: Update to 0.15.2.
* gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus 1fe9919a57
gnu: r-tsa: Update to 1.2.
* gnu/packages/cran.scm (r-tsa): Update to 1.2.
[propagated-inputs]: Remove r-tseries.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus be5642eb69
gnu: r-statnet-common: Update to 4.1.4.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus e32368c130
gnu: r-metap: Update to 1.0.
* gnu/packages/cran.scm (r-metap): Update to 1.0.
[propagated-inputs]: Add r-rdpack.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus d97d98e142
gnu: r-tinytex: Update to 0.8.
* gnu/packages/cran.scm (r-tinytex): Update to 0.8.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 6f5b157e3d
gnu: r-pillar: Update to 1.3.0.
* gnu/packages/cran.scm (r-pillar): Update to 1.3.0.
[propagated-inputs]: Add r-fansi.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 69bf449bf1
gnu: r-xts: Update to 0.11-0.
* gnu/packages/cran.scm (r-xts): Update to 0.11-0.
[native-inputs]: Remove.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 1b3b2a72ee
gnu: r-mice: Update to 3.3.0.
* gnu/packages/cran.scm (r-mice): Update to 3.3.0.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus a7265593d3
gnu: r-pan: Update to 1.6.
* gnu/packages/cran.scm (r-pan): Update to 1.6.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus e7630cc931
gnu: r-jomo: Update to 2.6-4.
* gnu/packages/cran.scm (r-jomo): Update to 2.6-4.
[propagated-inputs]: Add r-ordinal.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus b8f6e2f82a
gnu: Add r-ordinal.
* gnu/packages/cran.scm (r-ordinal): New variable.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus dc66835226
gnu: Add r-ucminf.
* gnu/packages/cran.scm (r-ucminf): New variable.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 45c156bf81
gnu: r-broom: Update to 0.5.0.
* gnu/packages/cran.scm (r-broom): Update to 0.5.0.
[propagated-inputs]: Add r-backports, r-dplyr, r-purrr, and r-tibble; remove
r-plyr and r-psych.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 2d2b95d151
gnu: r-ipred: Update to 0.9-7.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-7.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus c73752cac5
gnu: r-pls: Update to 2.7-0.
* gnu/packages/cran.scm (r-pls): Update to 2.7-0.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus b00e8ae771
gnu: r-glue: Update to 1.3.0.
* gnu/packages/cran.scm (r-glue): Update to 1.3.0.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus b72de5b3f6
gnu: r-callr: Update to 3.0.0.
* gnu/packages/cran.scm (r-callr): Update to 3.0.0.
[propagated-inputs]: Add r-base64enc.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus e3c1e93e35
gnu: r-reprex: Update to 0.2.0.
* gnu/packages/cran.scm (r-reprex): Update to 0.2.0.
[propagated-inputs]: Add r-clipr, r-rlang, and r-withr.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 2cdd9d4f83
gnu: r-reticulate: Update to 1.10.
* gnu/packages/cran.scm (r-reticulate): Update to 1.10.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus cb96d81be4
gnu: r-doby: Update to 4.6-2.
* gnu/packages/cran.scm (r-doby): Update to 4.6-2.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus 589bd1c426
gnu: Add r-flextable.
* gnu/packages/cran.scm (r-flextable): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 78f2c08c0b
gnu: r-rmarkdown: Use latest version of Pandoc.
* gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Replace
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:06 +02:00
Ricardo Wurmus f9f4578ba0
Revert "gnu: ghc-tasty: Update to 1.1.0.3."
This reverts commit 3ad6b89090.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 90708323a1
Revert "gnu: ghc-base-compat: Update to 0.10.4."
This reverts commit 0fa2c552fc.

We may not upgrade base-compat at this point because we haven't upgraded the
default GHC yet.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 0fd7d59dc3
gnu: Add r-moonbook.
* gnu/packages/cran.scm (r-moonbook): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus aaed237d1b
gnu: Add r-nortest.
* gnu/packages/cran.scm (r-nortest): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 1f560b9cdb
gnu: Add r-sjmisc.
* gnu/packages/cran.scm (r-sjmisc): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus cfc0631433
gnu: Add r-sjlabelled.
* gnu/packages/cran.scm (r-sjlabelled): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus de059e4bd3
gnu: Add r-prediction.
* gnu/packages/cran.scm (r-prediction): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus bfee9ce88f
gnu: Add r-snakecase.
* gnu/packages/cran.scm (r-snakecase): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus c183fa2688
gnu: Add r-officer.
* gnu/packages/cran.scm (r-officer): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 5dbe7aa920
gnu: r-googlesheets: Update to 0.3.0.
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.3.0.
[propagated-inputs]: Add r-tibble.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 88cb7aa9e7
gnu: r-plotly: Update to 4.8.0.
* gnu/packages/statistics.scm (r-plotly): Update to 4.8.0.
[propagated-inputs]: Add r-promises and r-rlang.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus 195eec737c
gnu: r-matrixstats: Update to 0.54.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.54.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus e2a2c3378e
gnu: r-r-rsp: Update to 0.43.0.
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus eefa7c7f3d
gnu: r-r-utils: Update to 2.7.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.7.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus e926159eb3
gnu: r-e1071: Update to 1.7-0.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 2aafa73a94
gnu: r-xml: Update to 3.98-1.16.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.16.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 41f6685388
gnu: r-rcpparmadillo: Update to 0.9.100.5.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.100.5.0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 19cb93be55
gnu: r-git2r: Update to 0.23.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.23.0.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 2848c52c5e
gnu: r-roxygen2: Update to 6.1.0.
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.0.
[propagated-inputs]: Add r-pkgload and r-purrr.
[native-inputs]: Add r-knitr.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 9b7e8df85b
gnu: r-ade4: Update to 1.7-13.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-13.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 7f38b31ecb
gnu: r-xtable: Update to 1.8-3.
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-3.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 6b02569f1d
gnu: r-dbplyr: Update to 1.2.2.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.2.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 3299bc1c5e
gnu: r-yaml: Update to 2.2.0.
* gnu/packages/statistics.scm (r-yaml): Update to 2.2.0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 2a96a093ec
gnu: r-evaluate: Update to 0.11.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.11.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 3bf390279d
gnu: r-scales: Update to 1.0.0.
* gnu/packages/statistics.scm (r-scales): Update to 1.0.0.
[propagated-inputs]: Remove r-dichromat and r-plyr.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 97c81cc174
gnu: r-stringi: Update to 1.2.4.
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus e362be8e89
gnu: Add r-pkgload.
* gnu/packages/cran.scm (r-pkgload): New variable.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 4f8247b54b
gnu: Add r-pkgbuild.
* gnu/packages/cran.scm (r-pkgbuild): New variable.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 1ec1989f80
gnu: r-httpuv: Update to 1.4.5.
* gnu/packages/web.scm (r-httpuv): Update to 1.4.5.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus f077174178
gnu: r-scran: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus 8e44ff0c0d
gnu: r-scater: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus e69c07e61a
gnu: r-hdf5array: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 16527f1cbc
gnu: r-ggbio: Update to 1.28.5.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.5.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 70daf9362b
gnu: r-biovizbase: Update to 1.28.2.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.2.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus ff7c7d62f4
gnu: r-keggrest: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 3c55304688
gnu: r-edaseq: Update to 2.14.1.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus eb251fe524
gnu: r-igraph: Update to 1.2.2.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus c273bcdfce
gnu: r-diffusionmap: Update to 1.1-0.1.
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 6f6aef80e3
gnu: r-seurat: Update to 2.3.4.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.4.
[source]: Remove snippet.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Remove r-caret, r-diffusionmap, r-fnn, r-gdata, r-ranger,
r-stringr, r-tclust, and rvgam; add r-httr.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 07bd90ce90
gnu: r-msnbase: Update to 2.6.3.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.3.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 4ee8c37cca
gnu: r-maldiquant: Update to 1.18.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.18.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 48b21f8b6b
gnu: r-seqminer: Update to 6.1.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus ad2ed8d01f
gnu: r-genomicfeatures: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus f2e79823c6
gnu: r-rtracklayer: Update to 1.40.6.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.6.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus aea1b6fb8a
gnu: r-delayedarray: Update to 0.6.5.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.5.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 3e61c2a8b1
gnu: r-rsamtools: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.3.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus a02340058c
gnu: r-biocparallel: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 1d56c79f86
gnu: r-genomicranges: Update to 1.32.6.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.6.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus 688cb08527
gnu: r-limma: Update to 3.36.3.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.3.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 33a103a543
gnu: r-variantannotation: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.1.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 1adf4596a6
gnu: r-edger: Update to 3.22.3.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.3.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 5728d9c6c0
gnu: r-iranges: Update to 2.14.11.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.11.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 3c04375614
gnu: r-biocviews: Update to 1.48.3.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.3.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus ce0e762bf9
gnu: r-annotationforge: Update to 1.22.2.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.2.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 65050163e0
gnu: r-chippeakanno: Update to 3.14.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.1.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 88e4ed55d6
gnu: Add r-clipr.
* gnu/packages/cran.scm (r-clipr): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 6a8469755c
gnu: Add r-rdpack.
* gnu/packages/cran.scm (r-rdpack): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus dd954dd743
gnu: Add r-gbrd.
* gnu/packages/cran.scm (r-gbrd): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 53718658d2
gnu: Add r-polynom.
* gnu/packages/cran.scm (r-polynom): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus 356230da4a
gnu: Add r-fansi.
* gnu/packages/cran.scm (r-fansi): New variable.
2018-09-05 20:03:03 +02:00
Ludovic Courtès 3b0153bd82
gnu: guix-daemon: Add dependency on Guile-Gcrypt.
This is a followup to 53166aec98, which
made Guile-Gcrypt a hard dependency.

* gnu/packages/package-management.scm (guix-daemon)[inputs]: Add
GUILE-GCRYPT.
2018-09-05 15:48:04 +02:00
Ludovic Courtès 7903f00a74
gnu: cuirass: Add dependency on Guile-Gcrypt.
This is a followup to 53166aec98, which
added a hard dependency of Guix on Guile-Gcrypt.

* gnu/packages/ci.scm (cuirass)[inputs]: Add GUILE-GCRYPT.
[arguments]: In 'wrap-program' phase, use 'string-join' to compute
'mods'.  Define 'objs' for use in GUILE_LOAD_COMPILED_PATH, and take
objects from lib/guile/X.Y/site-ccache.
2018-09-05 15:35:54 +02:00
Ludovic Courtès 5e3082df1c
gnu: guile-fibers: Install .go files to "…/site-ccache".
* gnu/packages/guile.scm (guile-fibers)[arguments]: New field.
2018-09-05 15:35:54 +02:00
Eric Bavier 3f5e6ccf9b
slepc: Upgrade to 3.9.2.
* gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
2018-09-05 08:10:38 -05:00
Eric Bavier c15be1280e
petsc: Upgrade to 3.9.3.
* gnu/packages/maths.scm (petsc): Upgrade to 3.9.3.
[arguments]: Remove unnecessary configure flags.
2018-09-05 08:10:37 -05:00
Eric Bavier a3a99e27bb
petsc: Move example code to "examples" output.
* gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
2018-09-05 08:10:37 -05:00
Eric Bavier b26e4f26ff
gnu: Add SUNDIALS.
* gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
2018-09-05 08:10:31 -05:00
Alex Vong 296f091b48
gnu: packages: mp3: Use HTTPS where possible.
* gnu/packages/mp3.scm (libmad)[home-page]: Use HTTPS.
(libid3tag)[home-page]: Likewise.
(mp3info)[source, home-page]: Likewise.
(mpg123)[source]: Likewise.
(libmpcdec)[source, home-page]: Likewise.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-05 20:56:55 +08:00
Alex Vong 998100e6e8
gnu: eyed3: Update home page.
* gnu/packages/mp3.scm (eyed3)[home-page]: Update to redirected HTTPS URL.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-05 20:56:55 +08:00
Ludovic Courtès 53166aec98
gnu: guix: Update to 3d43017.
* gnu/packages/package-management.scm (guix): Update to 3d43017.
2018-09-05 14:31:48 +02:00
Ludovic Courtès 185948b8a8
gnu: xorg: Fix typo.
* gnu/packages/xorg.scm: Fix typo in Benjamin's email address.
2018-09-05 13:57:43 +02:00
Ricardo Wurmus 4fd2622df8
gnu: python-tables: Update to 3.4.4.
* gnu/packages/python.scm (python-tables): Update to 3.4.4.
2018-09-05 12:01:23 +02:00
Ricardo Wurmus 8afdeb8751
gnu: python-pybigwig: Update to 0.3.12.
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.12.
[propagated-inputs]: Add python-numpy.
2018-09-05 12:01:23 +02:00
Ricardo Wurmus 0d7974c376
gnu: libbigwig: Update to 0.4.2.
* gnu/packages/bioinformatics.scm (libbigwig): Update to 0.4.2.
[source]: Fetch from git.
[arguments]: Disable tests; remove build phases "disable-curl-test" and
"create-target-dirs".
[native-inputs]: Add python-2.
2018-09-05 12:01:23 +02:00
Ricardo Wurmus ca1dc4c76a
gnu: nss-pam-ldapd: Update to 0.9.10.
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.10.
2018-09-05 11:44:52 +02:00
Rutger Helling fefe17b088
gnu: dolphin-emu: Update to commit 5f0d825.
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 5f0d825.
2018-09-05 10:23:20 +02:00
Leo Famulari fcf4841c0e
gnu: Zsh: Patch some tests that began failing in 5.6.
* gnu/packages/shells.scm (zsh)[arguments]: Patch the tests rather than deleting
them.
2018-09-04 18:34:01 -04:00
Leo Famulari 95681e5586
gnu: Zsh: Update to 5.6 [fixes CVE-2018-{0502,13259}].
* gnu/packages/shells.scm (zsh): Update to 5.6.
[arguments]: Skip some tests.
2018-09-04 18:10:53 -04:00
Ludovic Courtès ca71942445
Switch to Guile-Gcrypt.
This removes (guix hash) and (guix pk-crypto), which now live as part of
Guile-Gcrypt (version 0.1.0.)

* guix/gcrypt.scm, guix/hash.scm, guix/pk-crypto.scm,
tests/hash.scm, tests/pk-crypto.scm: Remove.
* configure.ac: Test for Guile-Gcrypt.  Remove LIBGCRYPT and
LIBGCRYPT_LIBDIR assignments.
* m4/guix.m4 (GUIX_ASSERT_LIBGCRYPT_USABLE): Remove.
* README: Add Guile-Gcrypt to the dependencies; move libgcrypt as
"required unless --disable-daemon".
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/bash.scm, guix/derivations.scm, guix/docker.scm,
guix/git.scm, guix/http-client.scm, guix/import/cpan.scm,
guix/import/cran.scm, guix/import/crate.scm, guix/import/elpa.scm,
guix/import/gnu.scm, guix/import/hackage.scm,
guix/import/texlive.scm, guix/import/utils.scm, guix/nar.scm,
guix/pki.scm, guix/scripts/archive.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/scripts/pack.scm,
guix/scripts/publish.scm, guix/scripts/refresh.scm,
guix/scripts/substitute.scm, guix/store.scm,
guix/store/deduplication.scm, guix/tests.scm, tests/base32.scm,
tests/builders.scm, tests/challenge.scm, tests/cpan.scm,
tests/crate.scm, tests/derivations.scm, tests/gem.scm,
tests/nar.scm, tests/opam.scm, tests/pki.scm,
tests/publish.scm, tests/pypi.scm, tests/store-deduplication.scm,
tests/store.scm, tests/substitute.scm: Adjust imports.
* gnu/system/vm.scm: Likewise.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this.  Add GUILE-GCRYPT.
(expression->derivation-in-linux-vm)[config]: Remove.
(iso9660-image)[config]: Remove.
(qemu-image)[config]: Remove.
(system-docker-image)[config]: Remove.
* guix/scripts/pack.scm: Adjust imports.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this.  Add GUILE-GCRYPT.
(self-contained-tarball)[build]: Call 'make-config.scm' without
 #:libgcrypt argument.
(squashfs-image)[libgcrypt]: Remove.
[build]: Call 'make-config.scm' without #:libgcrypt.
(docker-image)[config, json]: Remove.
[build]: Add GUILE-GCRYPT to the extensions  Remove (guix config) from
the imported modules.
* guix/self.scm (specification->package): Remove "libgcrypt", add
"guile-gcrypt".
(compiled-guix): Remove #:libgcrypt.
[guile-gcrypt]: New variable.
[dependencies]: Add it.
[*core-modules*]: Remove #:libgcrypt from 'make-config.scm' call.
Add #:extensions.
[*config*]: Remove #:libgcrypt from 'make-config.scm' call.
(%dependency-variables): Remove %libgcrypt.
(make-config.scm): Remove #:libgcrypt.
* build-aux/build-self.scm (guile-gcrypt): New variable.
(make-config.scm): Remove #:libgcrypt.
(build-program)[fake-gcrypt-hash]: New variable.
Add (gcrypt hash) to the imported modules.  Adjust load path
assignments.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-GCRYPT.
[arguments]: In 'wrap-program' phase, add GUILE-GCRYPT to the search
path.
2018-09-04 17:25:11 +02:00
Alex Vong 1bf758767d
gnu: Add emacs-picpocket.
* gnu/packages/emacs.scm (emacs-picpocket): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-04 15:39:43 +02:00
Paul Garlick 71ca16b58d
gnu: petsc-openmpi: Configure with support for hdf5 data format.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add
hdf5-parallel-openmpi.
[arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib'
flags.  Add 'set-test-environment' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-04 15:22:48 +02:00
Jonathan Brielmaier b50658fe8a
gnu: kicad: Update to 5.0.0.
* gnu/packages/engineering.scm (kicad): Update to 5.0.0.
[source]: Change from git to url-fetch.
[arguments]: Remove now unneeded build version parameter.
[inputs]: Add opencascade-oce.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-04 15:02:59 +02:00
Arun Isaac 906a396bff
gnu: ghc-zlib: Enable tests.
* gnu/packages/haskell.scm (ghc-zlib)[arguments]: Enable tests. Allow building
with newer tasty.
[native-inputs]: Add ghc-quickcheck, ghc-tasty, ghc-tasty-hunit and
ghc-tasty-quickcheck.
2018-09-04 17:31:09 +05:30
Arun Isaac 6300ba5b66
gnu: ghc-integer-logarithms: Allow building with newer tasty.
* gnu/packages/haskell.scm (ghc-integer-logarithms)[arguments]: Allow building
with newer tasty.
2018-09-04 15:24:32 +05:30
Arun Isaac 8374cc4b05
gnu: ghc-tasty-ant-xml: Update to 1.1.4.
* gnu/packages/haskell-check.scm (ghc-tasty-ant-xml): Update to 1.1.4.
2018-09-04 15:21:56 +05:30
Arun Isaac 3ad6b89090
gnu: ghc-tasty: Update to 1.1.0.3.
* gnu/packages/haskell-check.scm (ghc-tasty): Update to 1.1.0.3.
[inputs]: Add ghc-wcwidth.
(ghc-attoparsec-bootstrap, ghc-integer-logarithms-bootstrap,
ghc-scientific-bootstrap): New variables.
(ghc-wcwidth)[inputs]: Replace ghc-attoparsec with ghc-attoparsec-bootstrap.
(ghc-scientific)[inputs]: Replace ghc-integer-logarithms with
ghc-integer-logarithms-bootstrap.
(ghc-attoparsec)[inputs]: Replace ghc-scientific with
ghc-scientific-bootstrap.
2018-09-04 12:15:17 +05:30
Arun Isaac 9c4b522f15
gnu: Add ghc-wcwidth.
* gnu/packages/haskell.scm (ghc-wcwidth): New variable.
2018-09-04 12:15:10 +05:30
Ludovic Courtès fd95f37f36
Revert "gnu: perl: Add support for cross-compilation"
This reverts commit 5108c18e7e, which was
accidentally committed.
2018-09-03 23:49:12 +02:00
Raphaël Mélotte 5108c18e7e
gnu: perl: Add support for cross-compilation
* gnu/packages/perl.scm (perl): use cross-libc when cross-compiling

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-03 23:41:08 +02:00
Benjamin Slade 38fe6449c0
gnu: Add transset-df.
* gnu/packages/xorg.scm (transset-df): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-03 23:40:23 +02:00
Marius Bakke 65a58f3907
gnu: ppp: Use OpenSSL for cryptography.
* gnu/packages/samba.scm (ppp)[source](patches): Add upstream patch.
[inputs]: Add OPENSSL.
[arguments]: Add substitution for OpenSSL headers.
2018-09-03 19:25:28 +02:00
Marius Bakke 70dc8db8e7
Merge branch 'master' into core-updates 2018-09-03 19:20:06 +02:00
Marius Bakke c702749dfd
gnu: arpack-ng: Update to 3.6.2.
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
2018-09-03 19:09:01 +02:00
Marius Bakke 91bb495b85
gnu: arpack-ng: Drop redundant phase.
* gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
2018-09-03 19:09:01 +02:00
Marius Bakke 1f7d142000
gnu: python-matplotlib: Update to 2.2.3.
* gnu/packages/python.scm (python-matplotlib): Update to 2.2.3.
2018-09-03 19:09:00 +02:00
Marius Bakke cbd7c65709
gnu: ppp: Return #t from all phases.
* gnu/packages/samba.scm (ppp)[arguments]: Return #t from phase.
2018-09-03 18:58:47 +02:00
Marius Bakke 84aa18ff7f
gnu: re2: Update to 2018-09-01.
* gnu/packages/regex.scm (re2): Update to 2018-09-01.
2018-09-03 18:58:47 +02:00
Marius Bakke fcde1d27bb
gnu: openexr: Update to 2.3.0.
* gnu/packages/graphics.scm (openexr): Update to 2.3.0.
[source](uri): Change to new download location.
[source](snippet): Remove workaround.
[source](patches): Remove.
* gnu/packages/patches/openexr-missing-samples.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-03 18:58:47 +02:00
Marius Bakke 1ae2c577a6
gnu: ilmbase: Update to 2.3.0.
* gnu/packages/graphics.scm (ilmbase): Update to 2.3.0.
[source](uri): Change to new download location.
2018-09-03 18:58:46 +02:00
Marius Bakke 9156206199
gnu: simplescreenrecorder: Build against modular Qt.
* gnu/packages/video.scm (simplescreenrecorder)[inputs]: Remove QT.  Add
QTBASE and QTX11EXTRAS.
2018-09-03 18:58:46 +02:00
Marius Bakke 65e686d6cb
Merge branch 'security-updates' 2018-09-03 18:58:20 +02:00
Efraim Flashner a5896da34e
gnu: gnu-pw-mgr: Update to 2.4.2.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.4.2.
2018-09-03 19:34:24 +03:00
Tobias Geerinckx-Rice 38a8cd329d
gnu: python-nbxmpp: Update to 0.6.7.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.7.
2018-09-03 18:21:43 +02:00
Tobias Geerinckx-Rice b619b7f67b
gnu: libircclient: Update to 1.10.
* gnu/packages/messaging.scm (libircclient): Update to 1.10.
2018-09-03 18:21:43 +02:00
Tobias Geerinckx-Rice cfcfc6ab62
Fix some typos.
* doc/guix.texi (Sound Services, DNS Services): Fix typos.
* gnu/packages/cpp.scm (json-modern-cxx)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-fancy-narrow)[synopsis, description]:
Likewise. Edit & mark up while we're here.
* gnu/packages/mail.scm (alot)[synopsis, description]: Ditto.
2018-09-03 18:21:43 +02:00
Tobias Geerinckx-Rice fb458bf3bc
gnu: sudo: Update to 1.8.25.
* gnu/packages/admin.scm (sudo): Update to 1.8.25.
2018-09-03 18:21:42 +02:00
Efraim Flashner 0cc6447669
gnu: python-efl: Update to 1.21.0.
* gnu/packages/enlightenment.scm (python-efl): Update to 1.21.0.
[source]: Don't use pypi source.
[arguments]: Delete network tests.
2018-09-03 17:32:44 +03:00
Efraim Flashner 290bef39f6
gnu: efl: Update to 1.21.0.
* gnu/packages/enlightenment.scm (efl): Update to 1.21.0.
2018-09-03 17:32:44 +03:00
Ricardo Wurmus 02ddafef55
gnu: python-scipy: Disable broken tests.
* gnu/packages/python.scm (python-scipy)[arguments]: Skip two broken tests.
2018-09-03 13:49:32 +02:00
Rutger Helling 26baaaf49b
gnu: c-toxcore: Update to 0.2.7.
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.7.
2018-09-03 08:22:51 +02:00
Rutger Helling aa613d71ec
gnu: openrct2: Update to 0.2.1.
* gnu/packages/games.scm (openrct2-objects): Update to 1.0.6.
* gnu/packages/games.scm (openrct2): Update to 0.2.1.
2018-09-03 08:22:50 +02:00
Efraim Flashner 647465ace9
gnu: jellyfish: Update to 2.2.10.
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.10.
[supported-systems]: Add aarch64-linux, mips64el-linux.
2018-09-03 08:32:33 +03:00
Oleg Pykhalov 3910977823
gnu: monitoring.scm: Fix copyright line.
This is a follow-up to ead46692ec.
2018-09-02 19:18:16 +03:00
Alex Vong 2bd6ed9e4c
gnu: haskell-mode: Fix test failure.
Fixes <https://bugs.gnu.org/31726>.

Thanks to Jack Hill <jackhill@jackhill.us> for exploring different solutions
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31726>.

* gnu/packages/patches/haskell-mode-unused-variables.patch,
gnu/packages/patches/haskell-mode-make-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/emacs.scm (haskell-mode)[source]: Use them.
[arguments]: Adjust 'pre-build' phase to embed file name.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-09-02 17:06:43 +02:00
Konrad Hinsen b21a55a9f2
gnu: emacs-helpful: Update to 0.13.
* gnu/packages/emacs.scm (emacs-helpful): Update to 0.13.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-02 16:58:06 +02:00
Konrad Hinsen 351b6463af
gnu: emacs-elisp-refs: Update to 1.3.
* gnu/packages/emacs.scm (emacs-elisp-refs): Update to 1.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-02 16:56:22 +02:00
Rutger Helling 87284c6b48
gnu: wine-staging: Update to 3.15.
* gnu/packages/wine.scm (wine-staging): Update to 3.15.
2018-09-02 08:53:03 +02:00
Rutger Helling ab2e38e206
gnu: wine-staging-patchset-data: Update to 3.15.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.15.
2018-09-02 08:53:03 +02:00
宋文武 9bf98520f2
gnu: rosegarden: Update to 18.06.
* gnu/packages/music.scm (rosegarden): Update to 18.06.
[home-page]: Use HTTPS.
2018-09-02 13:18:28 +08:00
Danny Milosavljevic 24d298b459
gnu: rust: Move rust-1.19 down. 2018-09-02 00:22:53 +02:00
Danny Milosavljevic 3159ef7c99
gnu: rust: Bootstrap (only) Rust 1.19.0 by mrustc.
* gnu/packages/patches/rust-1.19-mrustc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.19)[source]: Add patch
"rust-1.19-mrustc.patch".
[arguments]<#:modules>: New field.
<#:phases>[patch-cargo-tomls]: New phase.
<#:phases>[build]: Modify.
<#:phases>[install]: Modify.
[native-inputs]: Replace rust-bootstrap by mrustc.
(rust-1.23)[native-inputs]: New field.
[arguments]<#:phases>: Delete phase "patch-cargo-tomls".
2018-09-02 00:09:34 +02:00
Manuel Graf a0a273c1ee
gnu: Add perftest.
* gnu/packages/linux.scm (perftest): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-01 17:51:29 -04:00
Julien Lepiller 37a0f47073
gnu: Add ruby-jekyll-paginate-v2.
* gnu/packages/ruby.scm (ruby-jekyll-paginate-v2): New variable.
2018-09-01 23:09:14 +02:00
Julien Lepiller 49e1dde53f
gnu: Add jekyll.
* gnu/packages/ruby.scm (jekyll): New variable.
2018-09-01 23:09:09 +02:00
Julien Lepiller 3729611379
gnu: Add ruby-pathutil.
* gnu/packages/ruby.scm (ruby-pathutil): New variable.
2018-09-01 23:09:06 +02:00
Julien Lepiller 49395112c4
gnu: Add ruby-forwardable-extended.
* gnu/packages/ruby.scm (ruby-forwardable-extended): New variable.
2018-09-01 23:09:04 +02:00
Julien Lepiller a13d451e18
gnu: Add ruby-liquid.
* gnu/packages/ruby.scm (ruby-liquid): New variable.
2018-09-01 23:09:02 +02:00
Julien Lepiller f1ec4d7611
gnu: Add ruby-mercenary.
* gnu/packages/ruby.scm (ruby-mercenary): New variable.
2018-09-01 23:09:00 +02:00
Julien Lepiller f8ae2ee528
gnu: Add ruby-safe-yaml.
* gnu/packages/ruby.scm (ruby-safe-yaml): New variable.
2018-09-01 23:08:58 +02:00
Julien Lepiller 73bfc125ef
gnu: Add ruby-heredoc-unindent.
* gnu/packages/ruby.scm (ruby-heredoc-unindent): New variable.
2018-09-01 23:08:56 +02:00
Julien Lepiller 2e072e37aa
gnu: Add ruby-hashie.
* gnu/packages/ruby.scm (ruby-hashie): New variable.
2018-09-01 23:08:55 +02:00
Julien Lepiller 2c5028bd97
gnu: Add ruby-rouge-2.
* gnu/packages/ruby.scm (ruby-rouge-2): New variable.
2018-09-01 23:08:53 +02:00
Julien Lepiller 4ce0414bca
gnu: Add ruby-rouge.
* gnu/packages/ruby.scm (ruby-rouge): New variable.
2018-09-01 23:08:46 +02:00
Julien Lepiller 5e2f74bdb8
gnu: Add ruby-em-websocket.
* gnu/packages/ruby.scm (ruby-em-websocket): New variable.
2018-09-01 23:08:44 +02:00
Julien Lepiller fa0063bcf4
gnu: Add ruby-http-parser.rb.
* gnu/packages/ruby.scm (ruby-http-parser.rb): New variable.
2018-09-01 23:08:42 +02:00
Julien Lepiller 0312706955
gnu: Add ruby-kramdown.
* gnu/packages/ruby.scm (ruby-kramdown): New variable.
2018-09-01 23:08:40 +02:00
Julien Lepiller 197ca8ecd2
gnu: Add ruby-prawn-table.
* gnu/packages/ruby.scm (ruby-prawn-table): New variable.
2018-09-01 23:08:38 +02:00
Julien Lepiller 7ad8dd086c
gnu: Add ruby-prawn.
* gnu/packages/ruby.scm (ruby-prawn): New variable.
2018-09-01 23:08:36 +02:00
Julien Lepiller 37fbced73c
gnu: Add ruby-yard.
* gnu/packages/ruby.scm (ruby-yard): New variable.
2018-09-01 23:08:34 +02:00
Julien Lepiller 770e3b535e
gnu: Add ruby-pdf-core.
* gnu/packages/ruby.scm (ruby-pdf-core): New variable.
2018-09-01 23:08:31 +02:00
Julien Lepiller 461fb8598e
gnu: Add ruby-pdf-inspector.
* gnu/packages/ruby.scm (ruby-pdf-inspector): New variable.
2018-09-01 23:08:29 +02:00
Julien Lepiller abbe629c6a
gnu: Add ruby-pdf-reader.
* gnu/packages/ruby.scm (ruby-pdf-reader): New variable.
2018-09-01 23:08:27 +02:00
Julien Lepiller 00d71efca6
gnu: Add ruby-morecane.
* gnu/packages/ruby.scm (ruby-morecane): New variable.
2018-09-01 23:08:10 +02:00
Julien Lepiller 83d9f67221
gnu: Add ruby-cane.
* gnu/packages/ruby.scm (ruby-cane): New variable.
2018-09-01 23:08:06 +02:00
Julien Lepiller 3224a5a84a
gnu: Add ruby-parallel.
* gnu/packages/ruby.scm (ruby-parallel): New variable.
2018-09-01 23:08:04 +02:00
Julien Lepiller ceac6f6f5b
gnu: Add ruby-jekyll-watch.
* gnu/packages/ruby.scm (ruby-jekyll-watch): New variable.
2018-09-01 23:08:02 +02:00
Julien Lepiller 88ed727fc5
gnu: Add ruby-listen-3.0.
* gnu/packages/ruby.scm (ruby-listen-3.0): New variable.
2018-09-01 23:08:00 +02:00
Julien Lepiller 5e242cb44c
gnu: Add ruby-jekyll-sass-converter.
* gnu/packages/ruby.scm (ruby-jekyll-sass-converter): New variable.
2018-09-01 23:07:58 +02:00
Julien Lepiller f00f449223
gnu: Add ruby-sass.
* gnu/packages/ruby.scm (ruby-sass): New variable.
2018-09-01 23:07:56 +02:00
Julien Lepiller 6456beef01
gnu: Add ruby-sass-spec.
* gnu/packages/ruby.scm (ruby-sass-spec): New variable.
2018-09-01 23:07:54 +02:00
Julien Lepiller ddc3a66798
gnu: Add ruby-diffy.
* gnu/packages/ruby.scm (ruby-diffy): New variable.
2018-09-01 23:07:52 +02:00
Julien Lepiller 0c8eedc153
gnu: Add ruby-terminfo.
* gnu/packages/ruby.scm (ruby-terminfo): New variable.
2018-09-01 23:07:50 +02:00
Julien Lepiller 18077ffc46
gnu: Add ruby-sass-listen.
* gnu/packages/ruby.scm (ruby-sass-listen): New variable.
2018-09-01 23:07:48 +02:00
Julien Lepiller 6bba8ecf7b
gnu: Add ruby-rdoc.
* gnu/packages/ruby.scm (ruby-rdoc): New variable.
2018-09-01 23:07:46 +02:00
Julien Lepiller f22c038799
gnu: Add ruby-command-line-reporter-3.
* gnu/packages/ruby.scm (ruby-command-line-reporter-3): New variable.
2018-09-01 23:07:44 +02:00
Julien Lepiller 78b9c291f6
gnu: Add ruby-command-line-reporter.
* gnu/packages/ruby.scm (ruby-command-line-reporter): New variable.
2018-09-01 23:07:42 +02:00
Julien Lepiller 9c7f15c048
gnu: Add ruby-colorator.
* gnu/packages/ruby.scm (ruby-colorator): New variable.
2018-09-01 23:07:39 +02:00
Julien Lepiller 6f2c4efb56
gnu: Add ruby-addressable.
* gnu/package/ruby.scm (ruby-addressable): New variable.
2018-09-01 23:07:37 +02:00
Julien Lepiller 0d16905b60
gnu: Add ruby-public-suffix.
* gnu/packages/ruby.scm (ruby-public-suffix): New variable.
2018-09-01 23:07:35 +02:00
Julien Lepiller afb7a3e8d5
gnu: ruby-ttfunk: Update to 1.5.1.
* gnu/packages/ruby.scm (ruby-ttfunk): Update to 1.5.1.
2018-09-01 23:07:32 +02:00
Julien Lepiller ef381322d5
gnu: ruby-activesupport: Update to 5.2.1.
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.2.1.
2018-09-01 23:07:30 +02:00
Julien Lepiller cbb50182ad
gnu: ruby-i18n: Update to 1.1.0.
* gnu/packages/ruby.scm (ruby-i18n): Update to 1.1.0.
2018-09-01 23:07:28 +02:00
Julien Lepiller 352b5d7e74
gnu: Add ruby-concurrent.
* gnu/packages/ruby.scm (ruby-concurrent): New variable.
2018-09-01 23:07:06 +02:00
Oleg Pykhalov ead46692ec
gnu: Add zabbix-agentd and zabbix-server.
* gnu/packages/monitoring.scm (zabbix-agentd, zabbix-server): New variables.
2018-09-01 19:01:36 +03:00
Marius Bakke e59588482b
gnu: nss, nss-certs: Update to 3.39 [fixes CVE-2018-12384].
* gnu/packages/gnuzilla.scm (nss): Update to 3.39.
* gnu/packages/certs.scm (nss-certs): Likewise.
2018-09-01 13:26:13 +02:00
Marius Bakke 7ea90c217f
gnu: nspr: Update to 4.20.
* gnu/packages/gnuzilla.scm (nspr): Update to 4.20.
2018-09-01 13:23:39 +02:00
Marius Bakke 279ed3efee
gnu: qtbase: Fix build with glibc >= 2.28.
* gnu/packages/patches/qtbase-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtbase)[source](patches): Use it.
[arguments]: Remove "--no-feature-renameat2" from #:configure-flags.
2018-09-01 13:00:01 +02:00
Marius Bakke 53b7c9716e
gnu: python-waf: Update to 2.0.10.
* gnu/packages/python.scm (python-waf): Update to 2.0.10.
2018-09-01 12:59:00 +02:00
Marius Bakke 3469a5ea47
gnu: gcc@4.9: Fix FTBFS with Glibc >= 2.28.
* gnu/packages/commencement.scm (gcc-for-libstdc++): New variable.
(libstdc++-boot0): Inherit from GCC-FOR-LIBSTDC++ instead of GCC-4.9.
* gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add
"gcc-4.9-libsanitizer-ustat.patch".
* gnu/packages/patches/gcc-4.9-libsanitizer-ustat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-09-01 12:58:47 +02:00
Marius Bakke a446cf26d7
gnu: texinfo@5: Fix FTBFS with Perl >= 5.28.
* gnu/packages/patches/texinfo-5-perl-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/texinfo.scm (texinfo-5)[source](patches): New field.
2018-09-01 12:56:52 +02:00
Leo Famulari ea59f0487b
gnu: Remove Krita 3.
Krita 3 fails to build with Qt 5.11.1. Since it's also unmaintained upstream,
remove it.

* gnu/packages/kde.scm (krita-3): Remove variable.
2018-09-01 02:09:53 -04:00
Leo Famulari fd67d793c2
gnu: Krita: Build with libraw 0.18.
Fixes <https://bugs.gnu.org/32467>.

Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/packages/photo.scm (libraw-0.18): New variable.
* gnu/packages/kde.scm (krita)[inputs]: Use libraw-0.18.
2018-09-01 02:09:52 -04:00
Leo Famulari 7ce9eaf013
gnu: Krita: Update to 4.1.1.
* gnu/packages/kde.scm (krita): Update to 4.1.1.
2018-09-01 02:09:52 -04:00
Leo Famulari d84a887a5f
gnu: libksysguard: Update to 5.13.4.
* gnu/packages/kde.scm (libksysguard): Update to 5.13.4.
2018-09-01 02:09:52 -04:00
Leo Famulari 600f1ad8e6
gnu: KDE: Update to 5.49.0.
Fixes <https://bugs.gnu.org/32013>.

* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, breeze-icons,
extra-cmake-modules, kactivities, kactivities-stats, kapidox, karchive, kauth,
kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets,
kcoreaddons, kcrash, kdbusaddons, kde-framework-integration, kdeclarative, kded,
kdesignerplugin, kdesu, kdewebkit, kdnssd, kdoctools, kemoticons, kfilemetadata,
kglobalaccel, kguiaddons, ki18n, kiconthemes, kidletime, kimageformats, kinit,
kio, kirigami, kitemmodels, kitemview, kjobwidgets, knewstuff, knotification,
knotifyconfig, kpackage, kparts, kpeople, kplotting, kpty, krunner, kservice,
ksyntaxhighlighting, ktexteditor, ktextwidgets, kunitcoversion, kwallet,
kwayland, kwidgetsaddons, kwindowsystem, kxmlgui, kxmlrpcclient,
modemmanager-qt, networkmanager-qt, oxygen-icons, plasma-framework, prison,
qqc2-desktop-style, solid, sonnet, threadweaver): Update to 5.49.0.
(extra-cmake-modules)[arguments]: Remove obsolete workaround.
(attica)[arguments]: Disable some new tests.

Co-authored-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
2018-09-01 02:09:49 -04:00
Eric Bavier 220458b098
gnu: hypre: Update to 2.14.0.
* gnu/packages/maths.scm (hypre): Update to 2.14.0
2018-08-31 10:08:00 -05:00
Ricardo Wurmus 9ce2f07ab6
gnu: python-matplotlib: Use python-pyqt-without-qtwebkit.
* gnu/packages/python.scm (python-matplotlib)[propagated-inputs]: Replace
python-pyqt with python-pyqt-without-qtwebkit.
2018-08-31 16:37:56 +02:00
Ricardo Wurmus 0e2d6d2698
gnu: Add python-pyqt-without-qtwebkit.
* gnu/packages/qt.scm (python-pyqt-without-qtwebkit): New variable.
2018-08-31 16:37:56 +02:00
Rutger Helling 0b6678cd44
gnu: retroarch: Update to 1.7.4.
* gnu/packages/emulators.scm (retroarch): Update to 1.7.4.
2018-08-31 08:25:45 +02:00
Nicolas Goaziou be4c63f484
gnu: mame: Update to 0.201.
* gnu/packages/emulators.scm (mame): Update to 0.201.
[arguments]: Remove unnecessary fix.
2018-08-31 07:04:17 +02:00
Tobias Geerinckx-Rice 0c048c11a4
gnu: cmocka: Update to 1.1.2.
* gnu/packages/check.scm (cmocka): Update to 1.1.2.
2018-08-30 19:29:08 +02:00
Tobias Geerinckx-Rice 8a68b71d99
gnu: keyutils: Update to 1.5.11.
* gnu/packages/crypto.scm (keyutils): Update to 1.5.11.
[inputs]: Add mit-krb5.
2018-08-30 19:28:11 +02:00
Tobias Geerinckx-Rice d6d9ca1017
gnu: Don't use unstable tarballs in (packages opencl).
* gnu/packages/opencl.scm (opencl-clhpp, clinfo, beignet, pocl)
[source]: Use GIT-FETCH and GIT-FILE-NAME.
(pocl)[arguments]: Remove ‘remove-headers’ phase.
(make-opencl-headers)[source]: Use GIT-FILE-NAME.
2018-08-30 19:28:11 +02:00
Tobias Geerinckx-Rice 8294362688
gnu: Add pipewalker.
* gnu/packages/games.scm (pipewalker): New public variable.
2018-08-30 19:28:11 +02:00
Tobias Geerinckx-Rice 6e8c75b884
gnu: Add msr-tools.
* gnu/packages/hardware.scm (msr-tools): New public variable.
2018-08-30 19:28:10 +02:00
Tobias Geerinckx-Rice aadd1d241c
gnu: Add ddcutil.
* gnu/packages/hardware.scm: New file.
(ddcutil): New public variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add the new file.
2018-08-30 19:28:10 +02:00
Marius Bakke 7693f678d1
gnu: pango: Replace with 1.42.4.
Fixes <https://bugs.gnu.org/32594>.

* gnu/packages/gtk.scm (pango)[replacement]: New field.
(pango-1.42.4): New public variable.
2018-08-30 18:57:10 +02:00
Marius Bakke 883832b480
gnu: appstream-glib: Update to 0.7.12.
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.12.
2018-08-30 18:44:57 +02:00
Marius Bakke 4c13cb36f8
gnu: GnuPG: Update to 2.2.10.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.10.
2018-08-30 18:44:57 +02:00
Marius Bakke e50c727878
gnu: rng-tools: Update to 6.4.
* gnu/packages/linux.scm (rng-tools): Update to 6.4.
2018-08-30 18:44:57 +02:00
Marius Bakke d3c1075c14
gnu: samba: Update to 4.8.5.
* gnu/packages/samba.scm (samba): Update to 4.8.5.
2018-08-30 18:44:57 +02:00
Marius Bakke 652940d060
gnu: ldb: Update to 1.3.6.
* gnu/packages/samba.scm (ldb): Update to 1.3.6.
2018-08-30 18:44:57 +02:00
Marius Bakke 99088aa751
gnu: p11-kit: Update to 0.23.14.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.14.
2018-08-30 18:44:56 +02:00
Marius Bakke 471884ed11
gnu: lilv: Propagate LV2.
* gnu/packages/audio.scm (lilv)[propagated-inputs]: Add LV2.
[inputs]: Remove.
2018-08-30 18:44:51 +02:00
Oleg Pykhalov b5d1286f2d
gnu: net-snmp: Specify '--with-openssl' configuration flag.
* gnu/packages/networking.scm (net-snmp)[arguments]: Add '--with-openssl'
flag.
2018-08-30 14:46:15 +03:00
Eric Bavier f9e140a243
netsurf: Upgrade to 3.8.
* gnu/packages/patches/netsurf-message-timestamp.patch: New patch.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
* gnu/packages/web.scm (netsurf): Upgrade to 3.8.
[source]: Add the new patch.
2018-08-30 00:44:40 -05:00
Eric Bavier c558113fb9
nsgenbind: Upgrade to 0.6.
* gnu/packages/web.scm (nsgenbind): Upgrade to 0.6.
2018-08-30 00:44:40 -05:00
Eric Bavier 1be7077572
libnspsl: Upgrade to 0.1.3.
* gnu/packages/web.scm (libnspsl): Upgrade to 0.1.3.
2018-08-30 00:44:40 -05:00
Eric Bavier 3e1035d738
libnsutils: Upgrade to 0.0.5.
* gnu/packages/web.scm (libnsutils): Upgrade to 0.0.5.
2018-08-30 00:44:40 -05:00
Eric Bavier 1dc02e727b
libnsgif: Upgrade to 0.2.1.
* gnu/packages/web.scm (libnsgif): Upgrade to 0.2.1.
2018-08-30 00:44:39 -05:00
Eric Bavier ef2198ac5b
libnsbmp: Upgrade to 0.1.5.
* gnu/packages/web.scm (libnsbmp): Upgrade to 0.1.5.
2018-08-30 00:44:39 -05:00
Eric Bavier bb38628fab
libsvgtiny: Upgrade to 0.1.7.
* gnu/packages/web.scm (libsvgtiny): Upgrade to 0.1.7.
2018-08-30 00:44:39 -05:00
Eric Bavier f8311c0fee
libdom: Upgrade to 0.3.3.
* gnu/packages/web.scm (libdom): Upgrade to 0.3.3.
2018-08-30 00:44:39 -05:00
Eric Bavier 2bb1752b7d
libcss: Upgrade to 0.8.0.
* gnu/packages/web.scm (libcss): Upgrade to 0.8.0.
2018-08-30 00:44:39 -05:00
Eric Bavier 60e411fc94
libwapcaplet: Upgrade to 0.4.1.
* gnu/packages/web.scm (libwapcaplet): Upgrade to 0.4.1.
2018-08-30 00:44:39 -05:00
Eric Bavier b06bf74b41
hubbub: Upgrade to 0.3.5.
* gnu/packages/web.scm (hubbub): Upgrade to 0.3.5.
2018-08-30 00:44:39 -05:00
Eric Bavier ea9b34c2f5
libparserutils: Upgrade to 0.2.4.
* gnu/packages/web.scm (libparserutils): Upgrade to 0.2.4.
2018-08-30 00:44:38 -05:00
Eric Bavier fa4131f2aa
netsurf-buildsystem: Upgrade to 1.7.
* gnu/packages/web.scm (netsurf-buildsystem): Upgrade to 1.7.
2018-08-30 00:44:33 -05:00
Mark H Weaver a28604ee81
gnu: linux-libre@4.4: Update to 4.4.153.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.153.
2018-08-30 00:53:01 -04:00
Tobias Geerinckx-Rice 9986316618
gnu: mujs: Update to 1.0.4.
* gnu/packages/javascript.scm (mujs): Update to 1.0.4.
2018-08-30 04:42:54 +02:00
Tobias Geerinckx-Rice bfb994d8be
gnu: r-car: Update to 3.0-2.
* gnu/packages/statistics.scm (r-car): Update to 3.0-2.
2018-08-30 04:42:52 +02:00
Tobias Geerinckx-Rice ad3306f62f
gnu: perl-gd: Update to 2.69.
* gnu/packages/gd.scm (perl-gd): Update to 2.69.
2018-08-30 04:42:51 +02:00
Tobias Geerinckx-Rice 33eea5c439
gnu: perl-sub-identify: Update to 0.14.
* gnu/packages/perl.scm (perl-sub-identify): Update to 0.14.
2018-08-30 04:42:51 +02:00
Tobias Geerinckx-Rice a82b561fef
gnu: robocut: Don't use unstable tarball.
* gnu/packages/printers.scm (robocut)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-30 04:42:38 +02:00
Tobias Geerinckx-Rice 1f0f9514eb
gnu: gparted: Update to 0.32.0.
* gnu/packages/disk.scm (gparted): Update to 0.32.0.
2018-08-30 04:40:31 +02:00
Tobias Geerinckx-Rice 7bb7920f64
gnu: duplicity: Update to 0.7.18.1.
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.1.
[arguments]: Remove upstreamed '--ignore-mdc-error' kluge.
Rename 'patch-source' phase to 'use-store-file-names'.
2018-08-30 03:51:00 +02:00
Kei Kebreau 99e0fb24fb
gnu: audacity: Fix GtkFileChooserDialog.
* gnu/packages/audio.scm (audacity)[arguments]: Add 'wrap-program' phase to fix
GtkFileChooserDialog.
[inputs]: Rename "gtk" to "gtk+".
2018-08-29 20:56:35 -04:00
Tobias Geerinckx-Rice 16de7f15cb
gnu: snappy: Optimise.
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-30 00:51:11 +02:00
Christopher Lemmer Webber caf8a003b3
gnu: emacs-racket-mode: Update to commit 92c3348.
* gnu/packages/emacs.scm (emacs-racket-mode): Update to commit 92c3348.
2018-08-29 15:52:20 -04:00
Vagrant Cascadian b4c698c8c9
gnu: python-trezor: Update to 0.10.2.
* gnu/packages/finance.scm (python-trezor): Update to 0.10.2.
[arguments]: Replace check with tests that do not require hardware device.
[propagated-inputs]: Add python-click, python-libusb1, python-pyblake2 and
python-typing.
[native-inputs]: Add python-mock and python-pytest.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-29 14:52:56 -04:00
pimi 4f9355c360
gnu: Add gffcompare.
gnu/packages/bioinformatics.scm (gffcompare): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-29 14:13:49 -04:00
pimi 9e21f2170e
gnu: Add r-abcoptim.
gnu/packages/cran.scm (r-abcoptim): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-29 14:13:46 -04:00
Danny Milosavljevic 15c56e8273
gnu: Add solaar.
* gnu/packages/admin.scm (solaar): New variable.
2018-08-29 17:18:30 +02:00
Danny Milosavljevic ac94ccb9b4
gnu: Add python-pyudev.
* gnu/packages/admin.scm (python-pyudev): New variable.
2018-08-29 17:18:28 +02:00
Ricardo Wurmus c7fe888b42
gnu: Add python-scanpy.
* gnu/packages/bioinformatics.scm (python-scanpy): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus 22b770ce00
gnu: Add python-anndata.
* gnu/packages/python.scm (python-anndata): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus d8b8eb3ff5
gnu: Add python-numba.
* gnu/packages/python.scm (python-numba): New variable.
2018-08-29 17:06:13 +02:00
Ricardo Wurmus 8892cac329
gnu: Add python-llvmlite.
* gnu/packages/llvm.scm (python-llvmlite): New variable.
2018-08-29 17:06:13 +02:00
Marius Bakke 9e17757ff5
Revert "gnu: snappy: Optimise."
This causes too many rebuilds for the master branch.

This reverts commit f96ed06805.
2018-08-29 16:58:54 +02:00
Ricardo Wurmus 9587544b44
gnu: Add ghc 8.4.3.
* gnu/packages/haskell.scm (ghc-8): Rename this...
(ghc-8.0): ...to this.
(ghc): Point at ghc-8.0.
(ghc-8): New variable for GHC 8.4.3.

Co-authored-by: Timothy Samplet <samplet@ngyro.com>
2018-08-29 16:56:35 +02:00
Ricardo Wurmus 59b55def00
gnu: Add r-infotheo.
* gnu/packages/cran.scm (r-infotheo): New variable.
2018-08-29 13:11:17 +02:00
Tobias Geerinckx-Rice acf18cb190
gnu: capstone: Use HTTPS home page.
* gnu/packages/engineering.scm (capstone)[home-page]: Use HTTPS.
2018-08-28 22:46:38 +02:00
Tobias Geerinckx-Rice 2c3d30ef51
gnu: r-plotrix: Update to 3.7-3.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-3.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice f882d7c7c5
gnu: python-apipkg: Update home page.
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice e29bb27d88
gnu: r-pracma: Update to 2.1.5.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice 7bbdd943e7
gnu: claws-mail: Update to 3.17.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.17.1.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice 4fca5a44f6
gnu: libntlm: Update to 1.5.
* gnu/packages/gsasl.scm (libntlm): Update to 1.5.
[source]: Use HTTPS.
2018-08-28 22:31:00 +02:00
Tobias Geerinckx-Rice f96ed06805
gnu: snappy: Optimise.
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-28 22:30:59 +02:00
Efraim Flashner dc8675afa7
gnu: Add urlscan.
* gnu/packages/mail.scm (urlscan): New variable.
2018-08-28 22:48:32 +03:00
Efraim Flashner 967de7c5b0
gnu: Add ephoto.
* gnu/packages/enlightenment.scm (ephoto): New variable.
2018-08-28 22:45:55 +03:00
Vagrant Cascadian 84fbb4b223
gnu: electron-cash: Update to 3.3.1.
* gnu/packages/finance.scm (electron-cash): Update to 3.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-28 15:30:13 -04:00
Leo Famulari 8a5a1eff42
gnu: dropbear: Fix CVE-2018-15599.
* gnu/packages/patches/dropbear-CVE-2018-15599.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (dropbear)[source]: Use it.
2018-08-28 14:44:11 -04:00
Ludovic Courtès 1ae29e3f5a
gnu: dico: Update to 2.6.
* gnu/packages/dico.scm (dico): Update to 2.6.
[inputs]: Switch to GUILE-2.2.
2018-08-28 12:35:02 +02:00
Ison111 d2434b6966
gnu: Add SpaceFM.
* gnu/packages/lxde.scm (spacefm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-08-28 12:35:02 +02:00
Alex Kost 40f7ebac66
gnu: Add emacs-build-farm.
* gnu/packages/emacs.scm (emacs-build-farm): New variable.
2018-08-28 12:23:52 +03:00
Alex Kost 8b1f8f64c8
gnu: openmw: Update to 0.44.0.
* gnu/packages/game-development.scm (openmw): Update to 0.44.0.
2018-08-28 12:23:52 +03:00
Marius Bakke d9362003b6
gnu: GRUB: Adjust to recent binutils changes.
* gnu/packages/patches/grub-binutils-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
2018-08-28 01:23:12 +02:00
Marius Bakke 8f1022d0a8
gnu: vala: Update to 0.40.9.
* gnu/packages/gnome.scm (vala): Update to 0.40.9.
2018-08-28 01:23:12 +02:00
Marius Bakke 61fca0fd22
Merge branch 'master' into core-updates 2018-08-28 01:22:24 +02:00
Marius Bakke 526ce41930
gnu: GRUB: Check for errors from efibootmgr.
* gnu/packages/patches/grub-check-error-efibootmgr.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): New field.
2018-08-28 01:19:28 +02:00
Marius Bakke 2987b2e0d2
gnu: seabios: Update source URI.
* gnu/packages/firmware.scm (seabios)[source](uri): Download from seabios.org.
2018-08-28 01:19:28 +02:00
Marius Bakke eb87b634a7
gnu: slang: Update to 2.3.2.
* gnu/packages/slang.scm (slang): Update to 2.3.2.
2018-08-28 01:19:28 +02:00
Marius Bakke 3c3c3d1d92
gnu: emacs-async: Download using git.
The MELPA tarball hash changed.  Prevent this problem in the future
by downloading a git checkout.

* gnu/packages/emacs.scm (emacs-async)[home-page]: Update to actual.
[source]: Use GIT-FETCH.
2018-08-28 01:19:28 +02:00
Leo Famulari 0de33cb364
gnu: feh: Enable EXIF support.
* gnu/packages/image-viewers.scm (feh)[arguments]: Enable EXIF support.
(inputs): Add libexif.
2018-08-27 17:04:57 -04:00
Leo Famulari f2d2dc70fc
gnu: libexif: Update home-page URL.
* gnu/packages/photo.scm (libexif)[home-page]: Update URL.
2018-08-27 17:04:57 -04:00
Leo Famulari 6635a3cc7f
gnu: python-pygit2: Update to 0.26.4.
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-27 15:13:46 -04:00
Marius Bakke 57dac1ee93
gnu: python-cairocffi: Update to 0.9.0.
* gnu/packages/python.scm (python-cairocffi): Update to 0.9.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Add PYTHON-PYTEST-COV and PYTHON-PYTEST-RUNNER.
[arguments]: Remove #:tests? and outdated comment.
2018-08-27 20:40:17 +02:00
Marius Bakke a1d3874293
gnu: python-xcffib: Update to 0.6.0.
* gnu/packages/python.scm (python-xcffib): Update to 0.6.0.
2018-08-27 20:40:16 +02:00
Marius Bakke 1abe0554a4
gnu: poppler: Update to 0.68.0.
* gnu/packages/pdf.scm (poppler): Update to 0.68.0.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
2018-08-27 20:40:16 +02:00
Marius Bakke eb637c64fe
gnu: poppler: Propagate Glib.
* gnu/packages/pdf.scm (poppler)[inputs]: Move GLIB ...
[propagated-inputs]: ... here.  New field.
2018-08-27 20:40:16 +02:00
Marius Bakke cbc8a92011
gnu: cairo: Fix undefined behaviour.
This fixes <https://bugs.freedesktop.org/show_bug.cgi?id=104325> which showed
up in Guix as an infinite loop during cairocffi tests.

* gnu/packages/patches/cairo-setjmp-wrapper.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gtk.scm (cairo)[source](patches): Add it.
2018-08-27 20:17:16 +02:00
Marius Bakke b651a5ab35
gnu: python-pandas: Update to 0.23.4.
* gnu/packages/python.scm (python-pandas): Update to 0.23.4.
[arguments]: Disable "--strict-data-files" pytest option.  Delete one more
test.  Adjust pytest invocation to be more verbose and skip very slow tests.
2018-08-27 18:28:29 +02:00
Marius Bakke 4053585e3f
gnu: python-beautifulsoup4: Update to 4.6.3.
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.6.3.
2018-08-27 17:13:07 +02:00
Marius Bakke 397334d977
gnu: python-pillow: Update to 5.2.0.
* gnu/packages/patches/python-pillow-fix-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pillow): Update to 5.2.0.
[source](patches, patch-flags): Remove.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Adjust custom check phase accordingly.
2018-08-27 16:49:05 +02:00
Marius Bakke b49e1e81db
gnu: python-pycairo: Update to 1.17.1.
* gnu/packages/gtk.scm (python-pycairo): Update to 1.17.1.
2018-08-27 16:33:48 +02:00
Marius Bakke 74f3fdbdb3
gnu: python-pygobject: Update to 3.28.3.
* gnu/packages/glib.scm (python-pygobject): Update to 3.28.3.
2018-08-27 16:30:02 +02:00
Marius Bakke e30fc54637
gnu: python-dateutil: Update to 2.7.3.
* gnu/packages/time.scm (python-dateutil): Update to 2.7.3.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
[license]: Add ASL2.0.
2018-08-27 16:28:06 +02:00
Clément Lassieur a30cbd5dfb
gnu: cuirass: Update to 8d40c49.
* gnu/packages/ci.scm (cuirass): Update to 8d40c49.
2018-08-27 16:12:56 +02:00
Marius Bakke d7c82e8e03
gnu: python-numpy: Update to 1.15.1.
* gnu/packages/python.scm (python-numpy): Update to 1.15.1.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Set PATH before running tests.  Use INVOKE.
2018-08-27 16:05:11 +02:00
Pierre Neidhardt 4715f92ef0
Update email for Pierre Neidhardt.
* .mailmap: Add name and email for Pierre Neidhardt.
* gnu/packages/c.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/disk.scm, gnu/packages/emacs.scm, gnu/packages/freedesktop.scm,
gnu/packages/golang.scm, gnu/packages/image.scm, gnu/packages/music.scm,
gnu/packages/networking.scm, gnu/packages/password-utils.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/textutils.scm, gnu/packages/video.scm, gnu/packages/xdisorg.scm:
Update email for Pierre Neidhardt.
2018-08-27 14:46:26 +02:00
Rutger Helling c0fdc5a53d
gnu: wayland: Update to 1.16.0.
* gnu/packages/freedesktop.scm (wayland): Update to 1.16.0.
2018-08-27 10:16:51 +02:00
Rutger Helling 2aeee872a6
gnu: weston: Update to 5.0.0.
* gnu/packages/freedesktop.scm (weston): Update to 5.0.0.
2018-08-27 10:11:30 +02:00
Ludovic Courtès 1ca54999db
gnu: Add Lepton-EDA.
* gnu/packages/engineering.scm (lepton-eda): New variable.
2018-08-27 01:13:23 +02:00
Ludovic Courtès 69502b5eb4
gnu: Add guile-aa-tree.
* gnu/packages/guile.scm (guile-aa-tree): New variable.
2018-08-27 01:13:23 +02:00
Marius Bakke 45c78bf924
gnu: gcc: Include libsanitizer patch for versions 6 and 7.
* gnu/packages/gcc.scm (gcc-6, gcc-7)[source](patches): Add
"gcc-libsanitizer-ustat.patch".
2018-08-26 16:50:39 +02:00
Marius Bakke 8d48f358e9
gnu: parted: Fix build with glibc >= 2.28.
* gnu/packages/patches/parted-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/disk.scm (parted)[source](patches): New field.
2018-08-26 16:20:04 +02:00
Marius Bakke 60ecc10f18
gnu: xorg-server@1.19.3: Rename to "xorg-server-for-tests".
...and update to the latest xorg-server.

* gnu/packages/gtk.scm (gtk+, gtkmm, girara): Change XORG-SERVER-1.19.3
references to XORG-SERVER-FOR-TESTS.
* gnu/packages/pdf.scm (zathura)[native-inputs]: Likewise.
* gnu/packages/xorg.scm (xorg-server-1.19.3): Rename to ...
(xorg-server-for-tests): ... this.
2018-08-26 16:17:31 +02:00
Christopher Lemmer Webber 6948fa0875
gnu: emacs-racket-mode: Update to commit add0190.
* gnu/packages/emacs.scm (emacs-racket-mode): Update to commit add0190.
2018-08-26 07:02:04 -04:00
Arun Isaac 2cad58ca6f
gnu: ghc-scientific: Update to 0.3.6.2.
* gnu/packages/haskell.scm (ghc-scientific): Update to 0.3.6.2.
[inputs]: Move ghc-tasty ...
[native-inputs]: ... to here.
2018-08-26 11:48:22 +05:30
Arun Isaac 7550f4b0ef
gnu: ghc-integer-logarithms: Update to 1.0.2.1.
* gnu/packages/haskell.scm (ghc-integer-logarithms): Update to 1.0.2.1.
[inputs]: Move ghc-quickcheck, ghc-smallcheck, ghc-tasty, ghc-tasty-hunit,
ghc-tasty-quickcheck, ghc-tasty-smallcheck ...
[native-inputs]: ... to here.
[home-page]: Update URI.
2018-08-26 11:37:25 +05:30
Arun Isaac b625f3a5fb
gnu: ghc-smallcheck: Update to 1.1.5.
* gnu/packages/haskell.scm (ghc-smallcheck): Update to 1.1.5.
2018-08-26 11:33:48 +05:30
Arun Isaac 3c30054290
gnu: ghc-optparse-applicative: Update to 0.14.2.0.
* gnu/packages/haskell.scm (ghc-optparse-applicative): Update to 0.14.2.0.
[arguments]: Enable tests.
2018-08-26 11:27:00 +05:30
Mark H Weaver cfb15a5163
gnu: linux-libre: Update to 4.18.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.5.
(%linux-libre-hash): Update hash.
2018-08-26 00:38:41 -04:00
Mark H Weaver fabe2c7354
gnu: linux-libre@4.14: Update to 4.14.67.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.67.
(%linux-libre-4.14-hash): Update hash.
2018-08-26 00:36:42 -04:00
Mark H Weaver 8d55adfa67
gnu: linux-libre@4.9: Update to 4.9.124.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.124.
2018-08-26 00:36:11 -04:00
Mark H Weaver 032712f621
gnu: linux-libre@4.4: Update to 4.4.152.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.152.
2018-08-26 00:35:30 -04:00
Ludovic Courtès 64daf2177f
gnu: emacs-recent-addresses: Switch to a branch that works with Helm.
* gnu/packages/emacs.scm (emacs-recent-addresses)[source]: Change URL
and update to afbbfdc.
2018-08-26 01:47:41 +02:00
Kyle Meyer bff861ece5
gnu: Add emacs-git-annex.
* gnu/packages/emacs.scm (emacs-git-annex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-26 01:47:40 +02:00
Kyle Meyer 8a9e0b6ebf
gnu: emacs-recent-addresses: Add missing words to description.
* gnu/packages/emacs.scm (emacs-recent-addresses)[description]: Add missing
words.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-26 01:47:40 +02:00
Marius Bakke 8ad6584103
gnu: mesa: Update to 18.1.7.
* gnu/packages/gl.scm (mesa): Update to 18.1.7.
2018-08-26 01:04:45 +02:00
Kei Kebreau 7d01ee66d4
gnu: Add avogadro.
* gnu/packages/chemistry.scm (avogadro): New variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-08-25 17:05:30 -04:00
Marius Bakke fa2146f769
gnu: xkeyboard-config: Update to 2.24.
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.24.
2018-08-25 20:13:08 +02:00
Marius Bakke c37e932764
gnu: gdb: Remove obsolete patch.
* gnu/packages/patches/gdb-python-3.7.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gdb.scm (gdb)[source](patches): Remove field.
2018-08-25 19:23:35 +02:00
Marius Bakke 65ba72d749
gnu: libx11: Remove graft for 1.6.6.
* gnu/packages/xorg.scm (libx11): Update to 1.6.6.
[replacement]: Remove field.
(libx11-1.6.6): Remove variable.
2018-08-25 16:57:35 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Marius Bakke 030c912616
gnu: libdrm: Update to 2.4.93.
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.93.
2018-08-25 16:40:31 +02:00
Marius Bakke 9b3b4c05a0
gnu: mesa: Build against elfutils instead of libelf.
* gnu/packages/gl.scm (mesa)[inputs]: Change from LIBELF to ELFUTILS.
2018-08-25 16:40:31 +02:00
Marius Bakke 173d291466
Merge branch 'master' into staging 2018-08-25 16:38:51 +02:00
Marius Bakke 94e9d750a2
gnu: libx11: Replace with 1.6.6 [security fixes].
This fixes CVE-2018-14599, CVE-2018-14600, and CVE-2018-14598.

* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11-1.6.6): New public variable.
2018-08-25 16:32:06 +02:00
Marius Bakke 27c1df05a8
gnu: linux-libre-headers: Update to 4.14.67.
* gnu/packages/linux.scm (linux-libre-headers): Update to 4.14.67.
2018-08-25 16:27:46 +02:00
Marius Bakke cf59c62853
gnu: Remove bison@2.7.
* gnu/packages/bison.scm (bison-2.7): Remove variable.
2018-08-25 16:23:37 +02:00
Marius Bakke 34f4c214b6
gnu: flex: Update bison-for-tests to 3.0.5.
* gnu/packages/flex.scm (flex)[inputs]: Make BISON-FOR-TESTS inherit source
from BISON, and disable tests on it since they require flex.
2018-08-25 16:23:36 +02:00
Marius Bakke 2fa4066c0a
gnu: findutils: Fix build with glibc 2.28.
* gnu/packages/patches/findutils-gnulib-libio.patch,
gnu/packages/patches/findutils-makedev.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (findutils)[source](patches): Use them.
2018-08-25 16:23:36 +02:00
Marius Bakke 8c8ded2cc9
gnu: grep: Work around test failure with glibc 2.28.
* gnu/packages/base.scm (grep)[arguments]: Add phase 'disable-failing-tests'.
2018-08-25 16:23:36 +02:00
Marius Bakke a8dcf6cec7
gnu: coreutils: Update to 8.30.
* gnu/packages/base.scm (coreutils): Update to 8.30.
[arguments]: Add phase to skip broken test.
2018-08-25 16:23:36 +02:00
Marius Bakke c7b87eeda2
gnu: gzip: Fix FTBFS with glibc >= 2.28.
* gnu/packages/compression.scm (gzip)[arguments]: Add phase
'patch-for-glibc-2.28'.
2018-08-25 16:23:36 +02:00
Marius Bakke 95895d53b0
gnu: m4: Fix FTBFS with glibc >= 2.28.
* gnu/packages/patches/m4-gnulib-libio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/m4.scm (m4)[source](patches): New field.
2018-08-25 16:23:36 +02:00
Marius Bakke 1aef659e86
gnu: gcc: Fix build with glibc >= 2.28.
* gnu/packages/patches/gcc-libsanitizer-ustat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gcc.scm (gcc-5)[source](patches): Add it.
2018-08-25 16:23:36 +02:00
Marius Bakke e13b547407
gnu: glibc: Update to 2.28.
* gnu/packages/patches/glibc-2.28-git-fixes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux): Update to 2.28.
[source](patches): Add 'glibc-2.28-git-fixes.patch'.  Remove 2.27 equivalent.
(glibc-2.28): Remove variable.
(glibc-2.27): New public variable
2018-08-25 16:23:35 +02:00
宋文武 7789bf9531
gnu: dante: Disable preloading to make 'sockd' work.
* gnu/packages/networking.scm (dante)[arguments]: Pass '--disable-preload'
to #:configure-flags.
2018-08-25 16:40:21 +08:00
Leo Famulari 36a8d5cdf4
gnu: OpenSSH: Update to 7.8p1.
* gnu/packages/ssh.scm (openssh): Update to 7.8p1.
[source]: Remove 'openssh-CVE-2018-15473.patch'.
* gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-24 17:04:58 -04:00
Ludovic Courtès c1352b4bad
gnu: font-gnu-unifont: Update to 11.0.02.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.02.
[arguments]: Adjust code to install 'unifont.info.gz' in 'install'
phase.
2018-08-24 17:54:10 +02:00
Ludovic Courtès bf0bb925ea
gnu: gdb: Update to 8.1.1.
* gnu/packages/gdb.scm (gdb): Update to 8.1.1.
2018-08-24 17:50:52 +02:00
Ricardo Wurmus 079cdd9c15
gnu: Add find-circ.
* gnu/packages/bioinformatics.scm (find-circ): New variable.
2018-08-24 11:20:19 +02:00
Tobias Geerinckx-Rice 4a3cf8929f
gnu: r-catools: Update to 1.17.1.1.
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.1.
2018-08-24 04:25:50 +02:00
Tobias Geerinckx-Rice 0e5d66abf6
gnu: keepassxc: Update to 2.3.4.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.4.
[arguments]: Remove obsolete ‘patch-sources’ phase.
2018-08-24 04:25:50 +02:00
Tobias Geerinckx-Rice a7b14a1b39
gnu: capstone: Update to 3.0.5.
* gnu/packages/engineering.scm (capstone): Update to 3.0.5.
[arguments]: Set cstool's LDFLAGS in the environment instead of
SUBSTITUTE*ing the Makefile.
2018-08-24 03:04:56 +02:00
Tobias Geerinckx-Rice 77c027b98b
gnu: r-trimcluster: Update to 0.1-2.1.
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.1-2.1.
2018-08-24 02:30:43 +02:00
Tobias Geerinckx-Rice 6d83cd1f9a
gnu: r-synchronicity: Update to 1.3.5.
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.5.
2018-08-24 02:30:42 +02:00
Tobias Geerinckx-Rice 6a9a50fd2f
gnu: guile-lib: Update to 0.2.6.1.
* gnu/packages/guile.scm (guile-lib): Update to 0.2.6.1.
[source]: Remove obsolete snippet.
2018-08-24 02:30:42 +02:00
Tobias Geerinckx-Rice a0a7e42500
gnu: tuxguitar: Update to 1.5.2.
* gnu/packages/music.scm (tuxguitar): Update to 1.5.2.
[source]: Remove obsolete snippet.
2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice 38146797e6
gnu: libgig: Update to 4.1.0.
* gnu/packages/music.scm (libgig): Update to 4.1.0.
2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice f6181921e5
gnu: denemo: Use INVOKE.
* gnu/packages/music.scm (denemo)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-08-24 02:30:41 +02:00
Tobias Geerinckx-Rice fbde7b08e5
gnu: ncmpc: Update to 0.29.
* gnu/packages/mpd.scm (ncmpc): Update to 0.29.
[build-system]: Switch to Meson.
[arguments]: Find ncurses.h.
[native-inputs]: Add gettext.
2018-08-24 02:30:41 +02:00
Ludovic Courtès 0b4e5f7e5b
gnu: parallel: Update to 20180822.
* gnu/packages/parallel.scm (parallel): Update to 20180822.
2018-08-24 00:40:09 +02:00
Ludovic Courtès 444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm.
Fixes a regression introduced in commit
7cbf06d8c2 where the top-level code of
these two modules would depend on each other, leading to "boost: unbound
variable" kind of errors in some circumstances.

* gnu/packages/databases.scm (boost-for-mysql): Move to...
* gnu/packages/boost.scm (boost-for-mysql): ... here.  Make public and
add 'properties' field.
2018-08-24 00:36:04 +02:00
Tobias Geerinckx-Rice d32da49c76
gnu: r-devtools: Update to 1.13.6.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.6.
2018-08-23 23:11:52 +02:00
Tobias Geerinckx-Rice c95f9f09a7
gnu: drumkv1: Update to 0.9.2.
* gnu/packages/music.scm (drumkv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 69b4d24871
gnu: synthv1: Update to 0.9.2.
* gnu/packages/music.scm (synthv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 29618d6722
gnu: samplv1: Update to 0.9.2.
* gnu/packages/music.scm (samplv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 2c59066f6a
gnu: padthv1: Update to 0.9.2.
* gnu/packages/music.scm (padthv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
Tobias Geerinckx-Rice 9459216aa1
gnu: Update home pages for the V1 synth family.
* gnu/packages/music.scm (synthv1, drumkv1, samplv1, padthv1)
[home-page]: Update & use HTTPS.
2018-08-23 23:01:55 +02:00
pimi 16b0e8da48
gnu: Add r-a3.
gnu/packages/cran.scm (r-a3): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi 881cc61c1b
gnu: Add r-manipulatewidget.
gnu/packages/cran.scm (r-manipulatewidget): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi 87b576aa8b
gnu: Add r-slam.
gnu/packages/cran.scm (r-slam): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi c994418b8c
gnu: Add r-abcanalysis.
gnu/packages/cran.scm (r-abcanalysis): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
pimi 67cf070239
gnu: Add r-miniui.
gnu/packages/web.scm (r-miniui): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
Tobias Geerinckx-Rice 694765e1d6
gnu: qjackctl: Update to 0.5.3.
* gnu/packages/audio.scm (qjackctl): Update to 0.5.3.
2018-08-23 17:16:42 +02:00
Tobias Geerinckx-Rice 97353dfb69
gnu: byobu: Update home page.
* gnu/packages/screen.scm (byobu)[home-page]: Update & use HTTPS.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice 9e29921162
gnu: byobu: Update to 5.127.
* gnu/packages/screen.scm (byobu): Update to 5.127.
* gnu/packages/patches/byobu-writable-status.patch: Adjust context
accordingly.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice f868276b8a
gnu: wine-staging-patchset-data: Don't use unstable archive.
* gnu/packages/wine.scm (wine-staging-patchset-data)[source]:
Use GIT-FETCH and GIT-FILE-NAME.
[native-inputs]: Remove unzip.
[arguments]: Adjust and refactor accordingly.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice 574e2ee8ea
gnu: yubico-piv-tool: Update to 1.6.1.
* gnu/packages/security-token.scm (yubico-piv-tool): Update to 1.6.1.
2018-08-23 17:16:41 +02:00
Tobias Geerinckx-Rice fa5511b6e9
gnu: r-car: Update to 3.0-1.
* gnu/packages/statistics.scm (r-car): Update to 3.0-1.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 39bb1cc77a
gnu: r-digest: Update to 0.6.16.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice ed61c44895
gnu: r-dplyr: Update to 0.7.6.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 51dbad04c5
gnu: r-rcpp: Update to 0.12.18.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
2018-08-23 17:16:40 +02:00
Tobias Geerinckx-Rice 02489a6646
gnu: duplicity: Update to 0.7.18.
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
2018-08-23 17:16:39 +02:00
Marius Bakke 3ea66dadf6
gnu: boost: Update to 1.68.0.
* gnu/packages/boost.scm (boost): Update to 1.68.0.
[arguments]: Remove /bin/sh substitution.
2018-08-23 14:56:03 +02:00
Marius Bakke bd65ecf460
gnu: boost: Provide libboost_python compatibility symlink.
* gnu/packages/boost.scm (boost)[arguments]: Add phase 'provide-libboost_python'.
2018-08-23 14:56:02 +02:00
Arun Isaac 72816ebed2
gnu: darcs: Update to 2.14.1.
* gnu/packages/version-control.scm (darcs): Update to 2.14.1.
[arguments]: Add patch-sh phase. Enable tests.
2018-08-23 15:51:43 +05:30
Arun Isaac d3c7e70858
gnu: ghc-zlib: Update to 0.6.2.
* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
2018-08-23 14:43:48 +05:30
Arun Isaac cdccdec1f2
gnu: ghc-quickcheck-instances: Update to 0.3.18.
* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18.
[arguments]: Allow building with newer base-compat.
2018-08-23 14:37:57 +05:30
Arun Isaac f797a0e987
gnu: ghc-graphviz: Update to 2999.20.0.2.
* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2.
[native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
2018-08-23 13:21:23 +05:30
Arun Isaac e173a95ffa
gnu: ghc-wl-pprint-text: Update to 1.2.0.0.
* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0.
[inputs]: Add ghc-base-compat.
2018-08-23 13:21:23 +05:30
Arun Isaac 0fa2c552fc
gnu: ghc-base-compat: Update to 0.10.4.
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
2018-08-23 13:21:23 +05:30
Arun Isaac a3ab433a14
gnu: ghc-fgl-arbitrary: Allow building with newer hspec.
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with
newer hspec.
2018-08-23 13:00:53 +05:30
Arun Isaac c4348ca72c
gnu: ghc-shelly: Update to 1.8.1.
* gnu/packages/haskell.scm (ghc-shelly): Update to 1.8.1.
[inputs]: Add ghc-hspec-contrib.
2018-08-23 12:53:47 +05:30
Arun Isaac 66dbe158cf
gnu: ghc-sandi: Update to 0.4.2.
* gnu/packages/haskell.scm (ghc-sandi): Update to 0.4.2.
2018-08-23 12:44:00 +05:30
Arun Isaac b1a1600030
gnu: ghc-fgl: Update to 5.6.0.0.
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.6.0.0.
[arguments]: Allow building with newer hspec.
2018-08-23 12:32:46 +05:30
Mark H Weaver 4e51d3e9ae
gnu: guile-redis: Remove duplicate 'home-page' field.
* gnu/packages/guile.scm (guile-redis): Remove duplicate 'home-page' field.
2018-08-23 02:30:30 -04:00
Mark H Weaver efe2e7506e
gnu: guile-gcrypt: Remove duplicate 'home-page' field.
This is a followup to commit b0cb92b2d4.

* gnu/packages/gnupg.scm (guile-gcrypt): Remove duplicate 'home-page' field.
2018-08-23 02:29:31 -04:00
Mark H Weaver 12dc04d0b4
gnu: linux-libre: Update to 4.18.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.4.
(%linux-libre-hash): Update hash.
2018-08-23 02:22:57 -04:00
Mark H Weaver 98dfe06e3e
gnu: linux-libre@4.14: Update to 4.14.66.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.66.
(%linux-libre-4.14-hash): Update hash.
2018-08-23 02:21:28 -04:00
Mark H Weaver bb2efc0384
gnu: linux-libre@4.9: Update to 4.9.123.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.123.
2018-08-23 02:20:44 -04:00
Mark H Weaver 435722f72c
gnu: linux-libre@4.4: Update to 4.4.151.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.151.
2018-08-23 02:20:00 -04:00
Ludovic Courtès b0cb92b2d4
gnu: Add guile-gcrypt.
* gnu/packages/gnupg.scm (guile-gcrypt): New variable.
2018-08-23 00:44:55 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22 15:40:08 -04:00
Paul Garlick 414f620fbb
gnu: python-pkgconfig: Enable tests.
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22 15:13:52 -04:00
Paul Garlick 5fab62527c
gnu: python-pkgconfig: Update to 1.3.1.
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22 15:13:49 -04:00
Leo Famulari 373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}.
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
2018-08-22 13:38:39 -04:00
Leo Famulari eb88ccf711
gnu: soundtouch: Update to 2.0.0.
* gnu/packages/audio.scm (soundtouch): Update to 2.0.0.
2018-08-22 13:38:39 -04:00
Marius Bakke 233df51ebc
Merge branch 'master' into staging 2018-08-22 18:14:04 +02:00
Marius Bakke 22cf2f4abf
gnu: python-cffi: Update to 1.11.5.
* gnu/packages/libffi.scm (python-cffi): Update to 1.11.5.
2018-08-22 18:01:10 +02:00
Marius Bakke a20016e15a
gnu: python-urllib3: Update to 1.23.
* gnu/packages/python-web.scm (python-urllib3): Update to 1.23.
2018-08-22 18:01:10 +02:00
Marius Bakke 064732bd0c
gnu: python-certifi: Update to 2018.8.13.
* gnu/packages/python-crypto.scm (python-certifi): Update to 2018.8.13.
2018-08-22 18:01:10 +02:00
Marius Bakke 00ffbfd394
gnu: python-idna: Update to 2.7.
* gnu/packages/python.scm (python-idna): Update to 2.7.
2018-08-22 18:01:10 +02:00
Marius Bakke fb76ef8477
gnu: Remove GCC ICE workarounds.
* gnu/packages/patches/doxygen-gcc-ice.patch,
gnu/packages/patches/mariadb-gcc-ice.patch,
gnu/packages/patches/perf-gcc-ice.patch: Delete files
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Likewise.
* gnu/packages/linux.scm (perf)[source](patches): Likewise.
* gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
2018-08-22 18:01:09 +02:00
Marius Bakke 43cec3fb1e
gnu: mariadb: Remove huge mysql_embedded executable.
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
2018-08-22 17:52:40 +02:00
Marius Bakke 22f5c07624
gnu: mariadb: Propagate OpenSSL.
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ...
[propagated-inputs]: ... here.
(r-rmysql)[inputs]: Remove OPENSSL.
2018-08-22 17:50:07 +02:00
Leo Famulari 180a8986e5
gnu: ImageMagick: Update to 6.9.10-10.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
2018-08-22 03:25:47 -04:00
Leo Famulari 09efe9af2d
gnu: GraphicsMagick: Update to 1.3.30.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
2018-08-22 03:25:46 -04:00
Tobias Geerinckx-Rice dc695341f7
gnu: r-fpc: Update to 2.1-11.1.
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 7138c48e6e
gnu: r-survival: Update to 2.42-6.
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
2018-08-22 00:03:44 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush.
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql.
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
2018-08-22 00:03:43 +02:00
Raphaël Mélotte f998453559
gnu: luakit: Fix crash on startup.
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
  wrapping phase.

This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-21 23:27:09 +02:00
Ludovic Courtès c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a.
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
2018-08-21 23:27:08 +02:00
Marius Bakke fdb222033c
gnu: gdbm: Update to 1.18.
* gnu/packages/databases.scm (gdbm): Update to 1.18.
2018-08-21 17:25:23 +02:00
Marius Bakke 25febeedc6
gnu: python-numpydoc: Update to 0.8.0.
* gnu/packages/python.scm (python-numpydoc): Update to 0.8.0.
[source](uri): Use PYPI-URI.
[source](snippet): Remove.
2018-08-21 17:24:31 +02:00
Marius Bakke 7eab5e7377
gnu: python-greenlet: Update to 0.4.14.
* gnu/packages/python.scm (python-greenlet): Update to 0.4.14.
2018-08-21 17:24:31 +02:00
Marius Bakke a8c9321368
gnu: cups-filters: Update to 1.21.0.
* gnu/packages/cups.scm (cups-filters): Update to 1.21.0.
2018-08-21 17:24:31 +02:00
Marius Bakke 3bbfc451ed
gnu: python-sphinx: Update to 1.7.7.
* gnu/packages/openstack.scm (python-mox3, python-openstackdocstheme,
  python-stevedore, python-oslo.config)[native-inputs]: Change
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
* gnu/packages/python.scm (python-sphinx): Update to 1.7.7.
[arguments]: Incorporate changes from the 1.6 variant.  Disable two tests.
[propagated-inputs]: Add PYTHON-PACKAGING and PYTHON-SPHINXCONTRIB-WEBSUPPORT.
[native-inputs]: Add IMAGEMAGICK and PYTHON-PYTEST.
(python2-sphinx)[propagated-inputs]: Add PYTHON2-TYPING.
(python-sphinx-1.6, python2-sphinx-1.6, python-sphinx-1.5.3): Remove variables.
(python-matplotlib-documentation)[native-inputs]: Change from
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
2018-08-21 17:24:31 +02:00
Marius Bakke f70785a4c0
gnu: python-sphinxcontrib-websupport: Add a python2 variant.
* gnu/packages/python.scm (python2-sphinxcontrib-websupport): New public variable.
2018-08-21 17:24:31 +02:00
Marius Bakke f65ef00556
gnu: python-sphinxcontrib-websupport: Update to 1.1.0.
* gnu/packages/python.scm (python-sphinxcontrib-websupport): Update to 1.1.0.
2018-08-21 17:24:31 +02:00
Marius Bakke 5f2707a255
gnu: python-sphinxcontrib-websupport: Disable tests.
* gnu/packages/python.scm (python-sphinxcontrib-websupport)[arguments]: New
field.
[native-inputs, inputs]: Remove.
2018-08-21 17:24:31 +02:00
Marius Bakke efada0946d
gnu: python-jinja2: Update to 2.10.
* gnu/packages/python.scm (python-jinja2): Update to 2.10.
2018-08-21 17:24:30 +02:00
Marius Bakke 88166588a0
gnu: python-babel: Run the tests.
* gnu/packages/python.scm (python-babel)[native-inputs]: Add PYTHON-FREEZEGUN
and PYTHON-PYTEST.
[arguments]: Replace 'check' phase.  Remove #:tests?.
2018-08-21 17:24:30 +02:00
Marius Bakke b3a21b2cf9
gnu: python-babel: Update to 2.6.0.
* gnu/packages/python.scm (python-babel): Update to 2.6.0.
2018-08-21 17:24:30 +02:00
Marius Bakke cb5ba282cc
gnu: python-pytz: Update to 2018.5.
* gnu/packages/time.scm (python-pytz): Update to 2018.5.
[source](uri): Update file extension.
[native-inputs]: Remove.
2018-08-21 17:24:30 +02:00
Marius Bakke 2be1b754ba
gnu: python-sqlalchemy: Update to 1.2.11.
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.2.11.
2018-08-21 17:24:30 +02:00
Marius Bakke 9871a896aa
gnu: python-sqlalchemy: Use 'invoke'.
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Use INVOKE
instead of SYSTEM*.
2018-08-21 17:24:30 +02:00
Marius Bakke 632900f586
gnu: python-packaging: Run the tests.
* gnu/packages/python.scm (python-packaging)[arguments]: Override 'check' phase.
2018-08-21 17:24:30 +02:00
Marius Bakke c52ff2ed76
gnu: python-packaging: Update to 17.1.
* gnu/packages/python.scm (python-packaging): Update to 17.1.
2018-08-21 17:24:30 +02:00
Marius Bakke 26aef5e956
gnu: python-imagesize: Fix typo.
* gnu/packages/python.scm (python-imagesize)[synopsis]: Remove stray character.
2018-08-21 17:24:29 +02:00
Marius Bakke 4c36fc7051
gnu: python-imagesize: Update to 1.0.0.
* gnu/packages/python.scm (python-imagesize): Update to 1.0.0.
[arguments]: Remove.
2018-08-21 17:24:29 +02:00
Marius Bakke 9764dac511
gnu: python-markupsafe: Update to 1.0.
* gnu/packages/python.scm (python-markupsafe): Update to 1.0.
2018-08-21 17:24:29 +02:00
Marius Bakke 4750b3a268
gnu: python-pytest: Run the tests again.
"python setup.py test" is ineffective since 3.6.x.  The circle is complete.

* gnu/packages/check.scm (python-pytest)[arguments]: Override 'check' phase.
[native-inputs]: Add PYTHON-PYTEST-BOOTSTRAP.
2018-08-21 17:24:29 +02:00
Marius Bakke e2c7b7bb68
gnu: libssh2: MIPS workaround no longer is.
* gnu/packages/ssh.scm (libssh2)[arguments]: Override the 'bootstrap' phase
regardless of target system.  Remove 'autoreconf' phase.
2018-08-21 17:24:29 +02:00
Marius Bakke 7b0faf32e9
gnu: pango: Update to 1.42.4.
* gnu/packages/gtk.scm (pango): Update to 1.42.4.
2018-08-21 17:24:29 +02:00
Marius Bakke 1935b8d56a
gnu: libffi: Don't optimize for the build machine CPU.
* gnu/packages/libffi.scm (libffi)[arguments]: Add #:configure-flags.
2018-08-21 17:24:29 +02:00
Marius Bakke e63199ec68
gnu: libatomic-ops: Update to 7.6.6.
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.6.6.
2018-08-21 17:24:29 +02:00
Marius Bakke 827509a30c
gnu: python-olefile: Update to 0.45.1.
* gnu/packages/python.scm (python-olefile): Update to 0.45.1.
2018-08-21 17:24:28 +02:00
Marius Bakke d76cd3defd
gnu: python-lxml: Update to 4.2.4.
* gnu/packages/python.scm (python-lxml): Update to 4.2.4.
2018-08-21 17:24:28 +02:00
Marius Bakke f6cd3f7970
gnu: python-ipaddress: Update to 1.0.22.
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.22.
2018-08-21 17:24:28 +02:00
Marius Bakke c69d231c2a
gnu: python-pycparser: Update to 2.18.
* gnu/packages/python.scm (python-pycparser): Update to 2.18.
2018-08-21 17:24:28 +02:00
Marius Bakke b3751f9cea
gnu: python-setuptools-scm: Update to 3.1.0.
* gnu/packages/python.scm (python-setuptools-scm): Update to 3.1.0.
2018-08-21 17:24:28 +02:00
Marius Bakke 67a7da1f31
gnu: python-hypothesis: Update to 3.68.2.
* gnu/packages/check.scm (python-hypothesis): Update to 3.68.2.
2018-08-21 17:24:28 +02:00
Marius Bakke e241f9a020
gnu: python-more-itertools: Update to 4.3.0.
* gnu/packages/python.scm (python-more-itertools): Update to 4.3.0.
2018-08-21 17:24:28 +02:00
Marius Bakke 7f5d3445af
gnu: python-scandir: Update to 1.9.0.
* gnu/packages/python.scm (python-scandir): Update to 1.9.0.
2018-08-21 17:24:28 +02:00
Marius Bakke e2da8bcd9e
gnu: python-pytest: Update to 3.7.2.
* gnu/packages/check.scm (python-pytest): Update to 3.7.2.
(python2-pytest)[propagated-inputs]: Add PYTHON2-PATHLIB.
(python2-pytest-bootstrap)[propagated-inputs]: Add PYTHON-PATHLIB2-BOOTSTRAP.
* gnu/packages/python.scm (python2-pathlib2-bootstrap): New public variable.
2018-08-21 17:24:28 +02:00
Marius Bakke 27885fcc26
gnu: python-pluggy: Update to 0.7.1.
* gnu/packages/python.scm (python-pluggy): Update to 0.7.1.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
2018-08-21 17:24:27 +02:00
Marius Bakke fdf16a81b2
gnu: graphite2: Update to 1.3.12.
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.12.
2018-08-21 17:24:27 +02:00
Marius Bakke 85932a7b8e
gnu: libuv: Update to 1.23.0.
* gnu/packages/libevent.scm (libuv): Update to 1.23.0.
2018-08-21 17:24:27 +02:00
Marius Bakke 1c61a086bc
gnu: expat: Update to 2.2.6.
* gnu/packages/xml.scm (expat): Update to 2.2.6.
2018-08-21 17:24:27 +02:00
Marius Bakke f203e53386
gnu: cmake: Update to 3.12.1.
* gnu/packages/cmake.scm (cmake): Update to 3.12.1.
2018-08-21 17:24:27 +02:00
Marius Bakke 09118c58da
gnu: glib: Update to 2.56.2.
* gnu/packages/glib.scm (glib): Update to 2.56.2.
2018-08-21 17:24:27 +02:00
Marius Bakke a5dae0c03c
gnu: dbus: Update to 1.12.10.
* gnu/packages/glib.scm (dbus): Update to 1.12.10.
2018-08-21 17:24:27 +02:00
Marius Bakke 11e5bf70d5
gnu: harfbuzz: Update to 1.8.8.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.8.8.
2018-08-21 17:24:27 +02:00
Marius Bakke 3f35e0da86
gnu: bootstrap-tarballs: Adjust to static outputs of zlib and libunistring.
* gnu/packages/make-bootstrap.scm (%gcc-static)[inputs]: Add ZLIB:STATIC.
(%guile-static)[inputs]: Add LIBUNISTRING:STATIC.
2018-08-21 17:24:26 +02:00
Marius Bakke c0b3867c21
gnu: libunistring: Do install static library.
...but do so to a separate output.  This reverts commit
1f2d64e4a8.

* gnu/packages/libunistring.scm (libunistring)[outputs]: New field.
[arguments]: Add phase for moving libunistring.a.  Remove #:configure-flags.
2018-08-21 17:24:26 +02:00
Leo Famulari 6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21 11:16:30 -04:00
Leo Famulari 2fbc38e33b
gnu: python-paramiko: Add some missing dependencies.
* gnu/packages/python-crypto.scm (python-paramiko,
python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
2018-08-21 11:04:47 -04:00
Pierre Neidhardt 15e57838c6
gnu: asymptote: Use minimal texlive-union.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:32:22 +02:00
Pierre Neidhardt 756fc3e1ef
gnu: texlive-latex-base: Include support files.
* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
2018-08-21 16:32:22 +02:00
Pierre Neidhardt 9b02a79bb0
gnu: mit-scheme: Use minimal texlive-union.
* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:30:22 +02:00
Tobias Geerinckx-Rice 49dcfb5045
gnu: sl: Don't use unstable tarball.
* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice 20b5b97381
gnu: python-rpy2: Update to 2.9.4.
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice db09a450d2
gnu: python-rpy2: Update home page.
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 93f9e0d9e9
gnu: r-iterators: Update to 1.0.10.
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 4370881631
gnu: r-foreign: Update to 0.8-71.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice aaaede49c1
gnu: r-with-tests: Return #t from all phases.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-08-21 07:04:06 +02:00
Tobias Geerinckx-Rice bdb7447843
gnu: fftw: Update to 3.3.8.
* gnu/packages/algebra.scm (fftw): Update to 3.3.8.
2018-08-21 07:04:06 +02:00
Tobias Geerinckx-Rice 4fb0871e77
gnu: at-spi2-atk: Update to 2.26.2.
* gnu/packages/gtk.scm (at-spi2-atk): Update to 2.26.2.
2018-08-21 07:04:06 +02:00
Tobias Geerinckx-Rice 8327ffcc7f
gnu: unixodbc: Update to 2.3.7.
* gnu/packages/databases.scm (unixodbc): Update to 2.3.7.
2018-08-21 07:04:05 +02:00
Tobias Geerinckx-Rice 6d863cdedd
gnu: r-openssl: Update to 1.0.2.
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
2018-08-21 03:25:42 +02:00
Tobias Geerinckx-Rice 4481004fa4
gnu: r-modeltools: Update to 0.2-22.
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
2018-08-21 03:25:41 +02:00
Tobias Geerinckx-Rice 8ecf3f7ea5
gnu: mysql: Update to 5.7.23.
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 7cbf06d8c2
gnu: mysql: Fix build.
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 725449bd7a
gnu: python-pyodbc: Update to 4.0.24.
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 28635e5266
gnu: python-mysqlclient: Update to 1.3.13.
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 9c112bee91
gnu: r-energy: Update to 1.7-5.
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice 8b0701d97a
gnu: r-tinytex: Update to 0.6.
* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice 2045af8035
gnu: r-xfun: Update to 0.3.
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice 9b77f724c0
gnu: r-jomo: Update to 2.6-3.
* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice cd4abb6d4a
gnu: r-trend: Update to 1.1.1.
* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice dc98bbcad4
gnu: r-lava: Update to 1.6.3.
* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice 632cefdac9
gnu: r-mitml: Update to 0.3-6.
* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice 658e37b6e8
gnu: r-vgam: Update to 1.0-6.
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice 52773e5cf4
gnu: python-py: Use HTTPS home page.
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
2018-08-20 16:36:20 +02:00
Tobias Geerinckx-Rice c85626bb0f
gnu: xpad: Update to 5.1.0.
* gnu/packages/gnome.scm (xpad): Update to 5.1.0.
[arguments]: Remove obsolete ‘run-autogen’ phase.
2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice bc2f9dc3ce
gnu: emacs-f: Update to 0.20.0.
* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice bd0570f21d
gnu: emacs-f: Don't use unstable tarball.
* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice cb4baa4da6
gnu: gimp: Report bugs to Guix.
Upstream prints this when running ./configure. Take the hint.

  NOTE: if you plan on packaging GIMP for distribution, it is
        recommended to override the bug report URL with option:
          --with-bug-report-url=https://example.com/
        so that you can filter packaging bugs from core bugs before
        reporting upstream.

* gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice 0f83d6029e
gnu: gimp: Update to 2.10.6.
* gnu/packages/gimp.scm (gimp): Update to 2.10.6.
2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice 901888a854
gnu: gegl: Update to 0.4.8.
* gnu/packages/gimp.scm (gegl): Update to 0.4.8.
2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice 3cae7f582e
gnu: babl: Update to 0.1.56.
* gnu/packages/gimp.scm (babl): Update to 0.1.56.
2018-08-20 16:35:54 +02:00
Ludovic Courtès 64bcc76c00
gnu: guile-ssh: Update to 0.11.3.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.3.
2018-08-20 16:32:18 +02:00
Ludovic Courtès 0ec3800274
gnu: guile-json: Update to 1.1.1.
* gnu/packages/guile.scm (guile-json): Update to 1.1.1.
[source]: Remove snippet.
[native-inputs]: Add PKG-CONFIG.
2018-08-20 16:32:18 +02:00
Ludovic Courtès a50eed201b
gnu: guile-redis: Update to 1.0.0.
* gnu/packages/guile.scm (guile-redis): Update to 1.0.0.
[source]: Fetch from github.com.  Remove snippet.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and PKG-CONFIG.
2018-08-20 16:32:17 +02:00
Roel Janssen e63da346cf
gnu: Update virtuoso-ose to 7.2.5.
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
2018-08-20 16:13:45 +02:00
Rutger Helling f307a9eca5
gnu: xpra: Update to 2.3.3.
* gnu/packages/xorg.scm (xpra): Update to 2.3.3.
2018-08-20 08:48:53 +02:00
Rutger Helling 346c146f7f
gnu: wine-staging: Update to 3.14.
* gnu/packages/wine.scm (wine-staging): Update to 3.14.
2018-08-20 08:17:49 +02:00
Rutger Helling 56d4b2163a
gnu: wine-staging-patchset-data: Update to 3.14.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.14.
2018-08-20 08:17:49 +02:00
Leo Famulari 1feaca62d3
gnu: syncthing: Invoke build steps with INVOKE.
* gnu/packages/syncthing.scm (syncthing)[arguments]: Use INVOKE.
2018-08-19 17:50:48 -04:00
Marius Bakke 146c3b2160
gnu: libconfuse: Update to 3.2.2 [fixes CVE-2018-14447].
* gnu/packages/wm.scm (libconfuse): Update to 3.2.2.
2018-08-19 18:40:30 +02:00
Ludovic Courtès 0b93d04ac5
gnu: gcc@4.8: Fix libsanitizer build issue.
Fixes <https://bugs.gnu.org/32397>.
Reported by fis trivial <ybbs.daans@hotmail.com>.

* gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-19 18:21:24 +02:00
Ludovic Courtès 6d1a7ce8ea
gnu: libchop: Fix build and test errors.
* gnu/packages/backup.scm (libchop)[arguments]: New field.
2018-08-19 18:21:24 +02:00
Ludovic Courtès c9f898cd31
gnu: libchop: Require gperf 3.0.
Fixes <https://bugs.gnu.org/32382>.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/packages/backup.scm (libchop)[native-inputs]: Use GPERF-3.0
instead of GPERF.
2018-08-19 18:21:24 +02:00
Marius Bakke 766e46e25f
gnu: libxkbcommon: Update to 0.8.2.
* gnu/packages/xdisorg.scm (libxkbcommon): Update to 0.8.2.
2018-08-19 15:44:18 +02:00
Marius Bakke 233e7a028d
gnu: qpdf: Update to 8.2.1.
* gnu/packages/pdf.scm (qpdf): Update to 8.2.1.
2018-08-19 15:41:25 +02:00
Marius Bakke 525a62e5ea
gnu: libical: Update to 3.0.4.
* gnu/packages/calendar.scm (libical): Update to 3.0.4.
2018-08-19 15:39:06 +02:00
Marius Bakke 16b1effb5f
gnu: libgsf: Update to 1.14.44.
* gnu/packages/gnome.scm (libgsf): Update to 1.14.44.
2018-08-19 15:36:23 +02:00
Marius Bakke a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Jan Nieuwenhuizen 8a502c3b60
gnu: mescc-tools: Update to 0.5.2.
* gnu/packages/mes.scm (mescc-tools): Update to 0.5.2.
2018-08-19 13:30:57 +02:00
Mark H Weaver 860c37b9f2
gnu: linux-libre: Update to 4.18.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.3.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): Rename to ...
(%linux-libre-4.18-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Apply %linux-libre-4.18-patches.
2018-08-19 02:19:20 -04:00
Mark H Weaver 08e43eba4e
gnu: linux-libre@4.14: Update to 4.14.65.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.65.
(%linux-libre-4.14-hash): Update hash.
2018-08-19 02:16:53 -04:00
Mark H Weaver ad6baf9dc1
gnu: linux-libre@4.9: Update to 4.9.122.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.122.
2018-08-19 02:16:08 -04:00
Mark H Weaver 1ae8efa57d
gnu: linux-libre@4.4: Update to 4.4.150.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.150.
2018-08-19 02:15:30 -04:00
Mark H Weaver 4ecd049074
Revert "gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3."
This reverts commit 50dbd26ce0.
2018-08-19 02:13:49 -04:00
Kei Kebreau b13ba3f1ba
gnu: gnuplot: Update to 5.2.4.
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
2018-08-18 21:21:52 -04:00
Kei Kebreau e1ecaa836f
gnu: xtensor: Update to 0.17.1.
* gnu/packages/algebra.scm (xtensor): Update to 0.17.1.
[source]: Use git-fetch.
2018-08-18 19:48:24 -04:00
Kei Kebreau 0bb41aec99
gnu: xtl: Update to 0.4.14.
* gnu/packages/cpp.scm (xtl): Update to 0.4.14.
[source]: Use git-fetch.
2018-08-18 19:48:18 -04:00
Mark H Weaver 50dbd26ce0
gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3.
This adds the sole fix included in upstream versions 4.18.3, 4.14.65,
4.9.122, and 4.4.150.

* gnu/packages/linux.scm
(%linux-libre-exempt-zeroed-PTEs-from-inversion-patch): New variable.
(%linux-libre-patches): Repurposed for patches applicable to all versions.
Add the aforementioned fix.
(%linux-libre-4.18-patches): New variable, with definition based on the
previous %linux-libre-patches.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Add %linux-libre-4.18-patches.
(linux-libre-4.14, linux-libre-arm-generic-4.14)
(linux-libre-arm-omap2plus-4.14, linux-libre-4.9)
(linux-libre-4.4): Add %linux-libre-patches.
2018-08-18 15:40:02 -04:00
Mark H Weaver 863e61994c
gnu: linux-libre: Update to 4.18.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.2.
(%linux-libre-hash): Update hash.
2018-08-18 15:39:59 -04:00
Mark H Weaver b8b2247803
gnu: linux-libre@4.14: Update to 4.14.64.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.64.
(%linux-libre-4.14-hash): Update hash.
2018-08-18 15:39:57 -04:00
Mark H Weaver 32f4859399
gnu: linux-libre@4.9: Update to 4.9.121.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.121.
2018-08-18 15:39:55 -04:00
Mark H Weaver f36f5170b2
gnu: linux-libre@4.4: Update to 4.4.149.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.149.
2018-08-18 15:39:48 -04:00
Tobias Geerinckx-Rice 8e950ee99c
gnu: sudo: Update to 1.8.24.
* gnu/packages/admin.scm (sudo): Update to 1.8.24.
2018-08-18 21:18:21 +02:00
Kei Kebreau f35c3bbb68
gnu: singular: Update to 4.1.1p3.
* gnu/packages/algebra.scm (singular): Update to 4.1.1p3.
2018-08-18 12:04:54 -04:00
Kei Kebreau 7fe491fbc8
gnu: cddlib: Update to 0.94i.
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
2018-08-18 12:04:54 -04:00
Tobias Geerinckx-Rice 8cd80a4b61
gnu: eigen: Update to 3.3.5.
* gnu/packages/algebra.scm (eigen): Update to 3.3.5.
[source]: Remove upstreamed ARM patch and obsolete substitutions.
* gnu/packages/patches/eigen-arm-neon-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-18 16:40:31 +02:00
Tobias Geerinckx-Rice fbe9c80fb7
gnu: eigen: Throw exceptions on test failure.
* gnu/packages/algebra.scm (eigen)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-08-18 16:19:58 +02:00
Tobias Geerinckx-Rice 1b00e3bd2d
gnu: knot: Update to 2.7.1.
* gnu/packages/dns.scm (knot): Update to 2.7.1.
[inputs]: Remove nettle, python-2, and python2-lmdb.
[arguments]: Remove ‘wrap-python-scripts’ phase for removed migration
scripts. Remove obsolete modules from, and add dnstap support for the
command-line tools to, #:configure-flags.
2018-08-18 16:07:00 +02:00
Tobias Geerinckx-Rice ee1362fc07
gnu: knot: Deduplicate documentation directories.
* gnu/packages/dns.scm (knot)[arguments]: Install documentation to the
correct versioned subdirectory, as already done by the build system.
2018-08-18 16:07:00 +02:00
Marius Bakke 7d4d7992aa
gnu: libmbim: Update to 1.16.2.
* gnu/packages/freedesktop.scm (libmbim): Update to 1.16.2.
2018-08-18 15:22:25 +02:00
Marius Bakke 90b3e136b8
gnu: xscreensaver: Update to 5.40.
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.40.
2018-08-18 15:20:41 +02:00
Marius Bakke 445704c228
gnu: webkitgtk: Update to 2.20.5.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.5.
2018-08-18 15:16:51 +02:00
Marius Bakke ddf1ace064
gnu: Add varnish-modules.
* gnu/packages/web.scm (varnish-modules): New public variable.
2018-08-18 15:12:36 +02:00
Marius Bakke da682825df
gnu: Add varnish.
* gnu/packages/web.scm (varnish): New variable.
2018-08-18 15:12:36 +02:00
Tobias Geerinckx-Rice 567f02353a
gnu: mpd: Update to 0.20.21.
* gnu/packages/mpd.scm (mpd): Update to 0.20.21.
2018-08-18 14:07:40 +02:00
Tobias Geerinckx-Rice 68a234c1b8
gnu: perl-module-scandeps: Update to 1.25.
* gnu/packages/perl.scm (perl-module-scandeps): Update to 1.25.
2018-08-18 14:07:40 +02:00
Tobias Geerinckx-Rice 4b6a0dfc2b
gnu: r-processx: Update to 3.2.0.
* gnu/packages/cran.scm (r-processx): Update to 3.2.0.
[propagated-inputs]: Add r-ps.
2018-08-18 14:07:39 +02:00
Tobias Geerinckx-Rice b55e64d49f
gnu: Add r-ps.
* gnu/packages/cran.scm (r-ps): New public variable.
2018-08-18 14:07:39 +02:00
Tobias Geerinckx-Rice 822fcaf8d8
gnu: r-mclust: Update to 5.4.1.
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.1.
2018-08-18 13:43:19 +02:00
Tobias Geerinckx-Rice 72d0585224
gnu: r-lme4: Update to 1.1-18-1.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-18-1.
2018-08-18 13:43:18 +02:00
Leo Famulari 399c5fafcd
gnu: gst-plugins-base: Don't build with Opus for 32-bit systems.
Fixes <https://bugs.gnu.org/32360> and <https://bugs.gnu.org/32466>.

* gnu/packages/gstreamer.scm (gst-plugins-base)[inputs]: Exclude opus
when building for 32-bit systems.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-08-18 13:27:41 +02:00
Tobias Geerinckx-Rice 72e782b2b5
gnu: strace: Disable parallel tests.
Tests fail in undeterministic fashion when run in parallel on phat rigs.

Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=32459>.
Reported by Clément Lassieur <clement@lassieur.org>.

* gnu/packages/linux.scm (strace)[arguments]: Disable #:parallel-tests?.
2018-08-18 13:17:11 +02:00
Mark H Weaver 3004f1c69b
gnu: linux-libre: Update to 4.18.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.1.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): New variable.
(linux-libre): Add %linux-libre-patches.
* gnu/packages/aux-files/linux-libre/4.17-arm.conf,
gnu/packages/aux-files/linux-libre/4.17-arm64.conf,
gnu/packages/aux-files/linux-libre/4.17-i686.conf,
gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
2018-08-18 06:19:31 -04:00
Rutger Helling b83a40906e
gnu: c-toxcore: Update to 0.2.6.
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.6.
2018-08-18 12:21:52 +02:00
Arun Isaac 2913a94237
gnu: Add dante.
* gnu/packages/networking.scm (dante): New variable.
2018-08-18 00:50:37 +05:30
Tobias Geerinckx-Rice a9088fc83e
gnu: emacs-git-modes: Update to 1.2.8.
* gnu/packages/emacs.scm (git-modes): Update to 1.2.8.
2018-08-17 17:51:15 +02:00
Kei Kebreau b66741edc9
gnu: octave: Update to 4.4.1.
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17 10:47:52 -04:00
Christopher Baines b98eace814
gnu: lollypop: Update to 0.9.521.
* gnu/packages/gnome.scm (lollypop)[version]: Update to 0.9.521.
[source]: Change the URL, as the project has moved on gitlab.gnome.org. Update
the uri and sha256.
[home-page]: Change to wiki.gnome.org as the previous URL 404's.
2018-08-17 12:21:48 +01:00
Tobias Geerinckx-Rice dcf16c12cf
gnu: r-lang: Update to 0.2.2.
* gnu/packages/statistics.scm (r-lang): Update to 0.2.2.
2018-08-17 13:13:11 +02:00
Tobias Geerinckx-Rice ef51e4e2b6
gnu: claws-mail: Update to 3.17.0.
* gnu/packages/mail.scm (claws-mail): Update to 3.17.0.
2018-08-17 13:13:11 +02:00
Tobias Geerinckx-Rice ba5c926c18
gnu: claws-mail: Use HTTPS.
* gnu/packages/mail.scm (claws-mail)[source, home-page]: Use HTTPS.
2018-08-17 13:13:10 +02:00
Tobias Geerinckx-Rice 24d6cc1d59
gnu: Use HTTPS for gtk.org.
* gnu/packages/gimp.scm (babl)[source]: Use HTTPS for ftp.gtk.org.
* gnu/packages/gnome.scm (rest)[home-page]: Use HTTPS for www.gtk.org.
* gnu/packages/gtk.scm (gtk+-2, gtk-doc)[home-page]: Likewise.
2018-08-17 13:13:10 +02:00
Oleg Pykhalov 773899112b
gnu: restic: Set a variable to disable FUSE tests.
* gnu/packages/backup.scm (restic): Set a variable to disable FUSE tests.
2018-08-17 11:05:01 +03:00
Tobias Geerinckx-Rice c4f8953a12
gnu: lxc: Update to 3.0.2.
* gnu/packages/virtualization.scm (lxc): Update to 3.0.2.
[source]: Remove patch.
* gnu/packages/patches/lxc-CVE-2018-6556.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17 05:19:05 +02:00
Tobias Geerinckx-Rice 3ef4b30128
gnu: python-pyusb: Update to 1.0.2.
* gnu/packages/libusb.scm (python-pyusb): Update to 1.0.2.
[source]: Update PyPI package name.
[home-page]: Update URI.
2018-08-17 03:50:35 +02:00
Tobias Geerinckx-Rice e2749d7576
gnu: ntp: Update to 4.2.8p12 [fix CVE-2018-12327].
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p12.
2018-08-17 03:49:19 +02:00
Vagrant Cascadian 5d706f1898
gnu: dtc: Update to 1.4.7.
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.7.
[native-inputs]: Add valgrind.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 18:47:58 -04:00
Tobias Geerinckx-Rice f133e24481
gnu: armadillo: Update to 9.100.5.
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
2018-08-17 00:38:17 +02:00
Tobias Geerinckx-Rice eb668d5c2e
gnu: r-pkgconfig: Update to 2.0.2.
* gnu/packages/statistics.scm (r-pkgconfig): Update to 2.0.2.
2018-08-17 00:38:17 +02:00
Tobias Geerinckx-Rice 22a01411ff
gnu: diffstat: Update to 1.62.
* gnu/packages/version-control.scm (diffstat): Update to 1.62.
2018-08-17 00:38:16 +02:00
Konrad Hinsen e0b49c785b
gnu: racket: Update to 7.0.
* gnu/packages/scheme.scm (racket): Update to 7.0.
[inputs]: Add libedit.
[arguments]: Update the list of FFI library references to patch.
[source]: Remove 'racket-fix-xform-issue.patch'.
* gnu/packages/patches/racket-store-checksum-override.patch: Adjust.
* gnu/packages/patches/racket-fix-xform-issue.patch: Delete file.
* gnu/local.mk: Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 18:36:09 -04:00
Björn Höfling 4866cba66a
gnu: libgcrypt: Make build reproducible.
* gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (libgcrypt)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 17:09:46 -04:00
Clément Lassieur 41c038078e
gnu: cuirass: Update to 4db99f6.
* gnu/packages/ci.scm (cuirass): Update to 4db99f6.
2018-08-16 22:56:54 +02:00
Pierre Neidhardt 288c8c97e8
gnu: Add texlive-latex-ocgx2.
* gnu/packages/tex.scm (texlive-latex-ocgx2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 16:53:29 -04:00
Pierre Neidhardt 7d50dff34c
gnu: Add texlive-latex-media9.
* gnu/packages/tex.scm (texlive-latex-media9): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 16:53:26 -04:00
Mark H Weaver b42592db6a
gnu: linux-libre: Update to 4.17.15.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.15.
(%linux-libre-hash): Update hash.
2018-08-16 16:25:07 -04:00
Mark H Weaver 0dcfc00550
gnu: linux-libre@4.14: Update to 4.14.63.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.63.
(%linux-libre-4.14-hash): Update hash.
2018-08-16 16:25:05 -04:00
Mark H Weaver 4edf8015ab
gnu: linux-libre@4.9: Update to 4.9.120.
* gnu/packages/linux.scm (linux-libre@4.9): Update to 4.9.120.
2018-08-16 16:25:02 -04:00
Mark H Weaver 88710fff04
gnu: linux-libre@4.4: Update to 4.4.148.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.148.
2018-08-16 16:25:00 -04:00
Tobias Geerinckx-Rice 1dfb14d2f7
gnu: btrfs-progs: Update to 4.17.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.17.1.
[source]: Remove patch.
[native-inputs]: Add python.
* gnu/packages/patches/btrfs-progs-e-value-block.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-16 22:21:53 +02:00
Tobias Geerinckx-Rice 76c888cb94
gnu: e2fsprogs: Update to 1.44.3.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3.
[source]: Remove glibc-2.27 patch.
(extundelete)[source]: Apply e2fsprogs-1.44 patch.
* gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Delete file...
* gnu/local.mk (dist_patch_DATA): ...remove it, and add...
* gnu/packages/patches/extundelete-e2fsprogs-1.44.patch: ...this new
file.
2018-08-16 22:21:53 +02:00
Leo Famulari 1d9b96c08f
gnu: oil-shell: Update to 0.5.0.
* gnu/packages/shells.scm (oil-shell): Update to 0.5.0.
2018-08-16 16:08:13 -04:00
Leo Famulari e2b2baa71d
Revert "gnu: Add r-hash."
This reverts commit b9ff25999d.

This package is a duplicate of the r-hash package added in
4646d18eb7.
2018-08-16 15:29:48 -04:00
Tobias Geerinckx-Rice bf3c84bd2d
Revert "gnu: efivar: Update to 36."
This reverts commit 025370b045.

See <https://github.com/rhboot/efivar/issues/111>, and
887fe1fbde7d72788ec348ab4665e1df3d0d704f...
2018-08-16 21:09:12 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke 37d203985e
gnu: python-cython: Disable tests that fail on armhf.
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
2018-08-16 20:33:28 +02:00
Tobias Geerinckx-Rice 8f60e5338a
gnu: python-pyxdg: Use PYPI-URI.
* gnu/packages/freedesktop.scm (python-pyxdg)[source]: Use PYPI-URI.
2018-08-16 18:06:48 +02:00
Tobias Geerinckx-Rice bd835ff22f
gnu: multipath-tools: Set CC in #:make-flags.
* gnu/packages/linux.scm (multipath-tools)[arguments]: Set ‘CC=gcc’
in #:make-flags instead of in a custom phase.
2018-08-16 17:57:50 +02:00
Tobias Geerinckx-Rice 12b99f753a
gnu: multipath-tools: Update to 0.7.7.
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.7.
2018-08-16 17:57:50 +02:00
Tobias Geerinckx-Rice 21756abd6f
gnu: strace: Update to 4.24.
* gnu/packages/linux.scm (strace): Update to 4.24.
2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice acafdda143
gnu: psmisc: Update to 23.2.
* gnu/packages/linux.scm (psmisc): Update to 23.2.
2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice 025370b045
gnu: efivar: Update to 36.
* gnu/packages/linux.scm (efivar): Update to 36.
2018-08-16 17:57:49 +02:00
Tobias Geerinckx-Rice c6dd279004
gnu: efivar: Update home page.
* gnu/packages/linux.scm (efivar)[source, home-page]: Update URIs.
2018-08-16 17:57:48 +02:00
Tobias Geerinckx-Rice 4505369c4e
gnu: libnfsidmap: Update to 0.27.
* gnu/packages/linux.scm (libnfsidmap): Update to 0.27.
[source]: Update source URI.
[native-inputs]: Add autoconf.
2018-08-16 17:57:48 +02:00
Marius Bakke 0a1f520d40
gnu: r-rmysql: Add missing dependency on OpenSSL.
* gnu/packages/databases.scm (r-rmysql)[inputs]: Add OPENSSL.
2018-08-16 17:39:10 +02:00
Amirouche 037d185111
gnu: argon2: Install pkgconfig file.
* gnu/packages/password-utils.scm (argon2)[arguments]: Patch libargon2.pc.
Add phase to install it.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
2018-08-16 17:18:05 +02:00
Marius Bakke 5f9a9945b5
gnu: vlc: Fix build with recent versions of libx264.
Fixes <https://bugs.gnu.org/32448>.
Reported by Clément Lassieur <clement@lassieur.org>.

* gnu/packages/video.scm (%vlc-libx264-compat.patch): New variable.
(vlc)[source](patches): New field.
2018-08-16 17:06:41 +02:00
Ricardo Wurmus b64ce4b725
gnu: Add r-inspect.
* gnu/packages/bioconductor.scm (r-inspect): New variable.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus cea4d360d4
gnu: Add r-rootsolve.
* gnu/packages/cran.scm (r-rootsolve): New variable.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus fbdf05b1fc
gnu: Add r-proc.
* gnu/packages/cran.scm (r-proc): New variable.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus 42744c1db6
gnu: Add ghc-chart.
* gnu/packages/haskell.scm (ghc-chart): New variable.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus cfac79ba6b
gnu: ghc-texmath: Update to 0.11.0.1.
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.11.0.1.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus cd4476032c
gnu: Add ghc-gtk2hs-buildtools.
* gnu/packages/haskell.scm (ghc-gtk2hs-buildtools): New variable.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus 2e72967b2a
gnu: Add ghc-operational.
* gnu/packages/haskell.scm (ghc-operational): New variable.
2018-08-16 17:04:13 +02:00
Ricardo Wurmus 657d220d17
gnu: Add ghc-intervalmap.
* gnu/packages/haskell.scm (ghc-intervalmap): New variable.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus ea6ffd3cea
gnu: Add ghc-missingh.
* gnu/packages/haskell.scm (ghc-missingh): New variable.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 19395aec69
gnu: Add ghc-errorcall-eq-instance.
* gnu/packages/haskell.scm (ghc-errorcall-eq-instance): New variable.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 7e2c8cb5fc
gnu: Add ghc-regex.
* gnu/packages/haskell.scm (ghc-regex): New variable.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus de866854aa
gnu: Add ghc-double-conversion.
* gnu/packages/haskell.scm (ghc-double-conversion): New variable.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus f8362eac6a
gnu: Add ghc-convertible.
* gnu/packages/haskell.scm (ghc-convertible): New variable.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 970481f1f7
gnu: ghc-pandoc: Update to 2.2.1.
* gnu/packages/haskell.scm (ghc-pandoc): Update to 2.2.1.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 178bd68116
gnu: ghc-vector-algorithms: Fix build errors.
* gnu/packages/haskell.scm (ghc-vector-algorithms)[arguments]:
Allow build with newer version of vector; add phase to disable building of
broken QuickCheck tests.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 376a6df4a5
gnu: ghc-enclosed-exceptions: Update to 1.0.3.
* gnu/packages/haskell.scm (ghc-enclosed-exceptions): Update to 1.0.3.
[arguments]: Disable tests.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 4aa46e40e8
gnu: ghc-http: Update to 4000.3.12.
* gnu/packages/haskell-web.scm (ghc-http): Update to 4000.3.12.
[native-inputs]: Add ghc-httpd-shed, ghc-test-framework, and
ghc-test-framework-hunit.
[inputs]: Add ghc-case-insensitive, ghc-conduit, ghc-conduit-extra,
ghc-http-types, ghc-puremd5, and ghc-split.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 83c4a5bd38
gnu: ghc-blaze-html: Allow build with newer HUnit.
* gnu/packages/haskell-web.scm (ghc-blaze-html)[arguments]: Allow newer HUnit.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus c437b8008b
gnu: ghc-streaming-commons: Update to 0.2.1.0.
* gnu/packages/haskell.scm (ghc-streaming-commons): Update to 0.2.1.0.
[inputs]: Add ghc-async.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 990cd5ef50
gnu: ghc-resourcet: Update to 1.2.1.
* gnu/packages/haskell.scm (ghc-resourcet): Update to 1.2.1.
[inputs]: Add ghc-unliftio-core.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus cdad36c39d
gnu: ghc-pandoc-types: Update to 1.17.5.1.
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.17.5.1.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 7ad3d4fd4f
gnu: ghc-pandoc-types-for-pandoc-1: Loosen version constraints.
* gnu/packages/haskell.scm (ghc-pandoc-types-for-pandoc-1)[arguments]: Allow
newer QuickCheck and HUnit.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus 5cb4620043
gnu: ghc-conduit: Update to 1.3.0.3.
* gnu/packages/haskell.scm (ghc-conduit): Update to 1.3.0.3.
[inputs]: Add ghc-mono-traversable, ghc-silently, ghc-unliftio,
ghc-unliftio-core, and ghc-vector.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus c106c48ee7
gnu: ghc-conduit-extra: Update to 1.3.0.
* gnu/packages/haskell.scm (ghc-conduit-extra): Update to 1.3.0.
[inputs]: Add ghc-typed-process.
2018-08-16 17:04:12 +02:00
Ricardo Wurmus d5040b4419
gnu: Add ghc-typed-process.
* gnu/packages/haskell.scm (ghc-typed-process): New variable.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 74b30be027
gnu: ghc-mono-traversable: Update to 1.0.9.0.
* gnu/packages/haskell.scm (ghc-mono-traversable): Update to 1.0.9.0.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 37d79707e3
gnu: ghc-conduit-combinators: Update to 1.3.0.
* gnu/packages/haskell.scm (ghc-conduit-combinators): Update to 1.3.0.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 5c51cdb962
gnu: ghc-uuid: Allow building with newer HUnit.
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow newer HUnit.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus d9c36e5b7a
gnu: ghc-uuid-types: Allow building with newer HUnit.
* gnu/packages/haskell.scm (ghc-uuid-types)[arguments]: Allow newer HUnit.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 05916da70b
gnu: ghc-ansi-wl-pprint: Update to 0.6.8.2.
* gnu/packages/haskell.scm (ghc-ansi-wl-pprint): Update to 0.6.8.2.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus a5f7a5f6ed
gnu: ghc-test-framework-hunit: Fix build with new HUnit.
* gnu/packages/haskell-check.scm (ghc-test-framework-hunit)[arguments]: Allow
newer version of HUnit.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus f1ac3bba66
gnu: ghc-hunit: Update to 1.6.0.0.
* gnu/packages/haskell-check.scm (ghc-hunit): Update to 1.6.0.0.
[inputs]: Add ghc-call-stack-boot.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus e42e9024c1
gnu: Add ghc-call-stack-boot.
* gnu/packages/haskell.scm (ghc-call-stack-boot): New variable.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 828c9ff831
gnu: ghc-http-conduit: Update to 2.3.2.
* gnu/packages/haskell-web.scm (ghc-http-conduit): Update to 2.3.2.
[inputs]: Add ghc-unliftio.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 6c7a3279ad
gnu: ghc-http-client: Update to 0.5.13.1.
* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.5.13.1.
[inputs]: Sort; add ghc-memory.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 7da274a808
gnu: ghc-http-types: Update to 0.12.1.
* gnu/packages/haskell-web.scm (ghc-http-types): Update to 0.12.1.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 57f25c7d9e
gnu: Add ghc-httpd-shed.
* gnu/packages/haskell-web.scm (ghc-httpd-shed): New variable.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 545de2a28c
gnu: ghc-tagsoup: Update to 0.14.6.
* gnu/packages/haskell-web.scm (ghc-tagsoup): Update to 0.14.6.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus c2c8d998fb
gnu: ghc-hspec: Update to 2.5.5.
* gnu/packages/haskell-check.scm (ghc-hspec): Update to 2.5.5.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 15fb81e587
gnu: ghc-hspec-expectations: Update to 0.8.2.
* gnu/packages/haskell-check.scm (ghc-hspec-expectations): Update to 0.8.2.
[arguments]: Disable tests.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 33a0785998
gnu: ghc-hspec-contrib: Update to 0.5.0.
* gnu/packages/haskell-check.scm (ghc-hspec-contrib): Update to 0.5.0.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 31caca659b
gnu: ghc-hspec-meta: Update to 2.4.6.
* gnu/packages/haskell-check.scm (ghc-hspec-meta): Update to 2.4.6.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 3b8e47745d
gnu: ghc-hspec-core: Update to 2.5.5.
* gnu/packages/haskell-check.scm (ghc-hspec-core): Update to 2.5.5.
[inputs]: Add ghc-clock.
2018-08-16 17:04:11 +02:00
Ricardo Wurmus 8d04a5c968
gnu: hspec-discover: Update to 2.5.5.
* gnu/packages/haskell-check.scm (hspec-discover): Update to 2.5.5.
[arguments]: Enable haddock phase.
[inputs]: Move ghc-hspec-meta from here...
[native-inputs]: ...to here; add ghc-quickcheck.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus b9ff25999d
gnu: Add r-hash.
* gnu/packages/cran.scm (r-hash): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus f51d8e4cb7
gnu: Add 389-ds-base.
* gnu/packages/openldap.scm (389-ds-base): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus 8c0b8cce43
gnu: Add python-ldap.
* gnu/packages/openldap.scm (python-ldap): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus e9e9783e0a
gnu: Add python-argparse-manpage.
* gnu/packages/python.scm (python-argparse-manpage): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus 65e748141d
gnu: Add r-blockfest.
* gnu/packages/cran.scm (r-blockfest): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus ff7d53a7be
gnu: Add r-basix.
* gnu/packages/cran.scm (r-basix): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus 5850c5b327
gnu: Add r-refgenome.
* gnu/packages/cran.scm (r-refgenome): New variable.
2018-08-16 17:04:10 +02:00
Ricardo Wurmus 0fccd15f78
gnu: Add r-doby.
* gnu/packages/cran.scm (r-doby): New variable.
2018-08-16 17:04:10 +02:00
Madalin Ionel-Patrascu e7448859ce
gnu: Add nudoku.
* gnu/packages/games.scm (nudoku): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
2018-08-16 17:04:10 +02:00
Marius Bakke f69b6d1f48
gnu: lilv: Update to 0.24.4.
* gnu/packages/audio.scm (lilv): Update to 0.24.4.
2018-08-16 16:05:20 +02:00
Marius Bakke eb2438dd52
gnu: serd: Update to 0.30.0.
* gnu/packages/rdf.scm (serd): Update to 0.30.0.
2018-08-16 16:02:20 +02:00
Marius Bakke 80b32d9620
gnu: sratom: Update to 0.6.2.
* gnu/packages/audio.scm (sratom): Update to 0.6.2.
2018-08-16 15:59:07 +02:00
Leo Famulari e42ba3daef
gnu: Add lpd8editor.
* gnu/packages/music.scm (lpd8editor): New variable.
2018-08-16 02:54:10 -04:00
Tobias Geerinckx-Rice 666da84f0f
gnu: erlang: Update to 21.0.5.
* gnu/packages/erlang.scm (erlang): Update to 21.0.5.
2018-08-16 05:32:47 +02:00
Tobias Geerinckx-Rice af18fff042
gnu: ttf2eot: Update to 0.0.3.
The old project home page[0] links to this new one.

[0]: <https://code.google.com/archive/p/ttf2eot/>

* gnu/packages/fontutils.scm (ttf2eot): Update to 0.0.3.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[home-page]: Update.
2018-08-16 05:32:47 +02:00
Tobias Geerinckx-Rice bf43e13381
gnu: ttf2eot: Return #t from all phases.
* gnu/packages/fontutils.scm (ttf2eot)[arguments]: Return #t rather than
undefined from the ‘install’ phase.
2018-08-16 05:21:38 +02:00
Tobias Geerinckx-Rice 70f57ae005
gnu: Use ©.
* gnu/packages/elixir.scm: Replace missing © with ©.
* gnu/packages/erlang.scm: Likewise.
* gnu/packages/marst.scm: Ditto.
2018-08-16 05:21:38 +02:00
Tobias Geerinckx-Rice ed67288262
gnu: erlang: Don't use unstable tarball.
* gnu/packages/erlang.scm (erlang)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-16 05:15:21 +02:00
Tobias Geerinckx-Rice eb5a664344
gnu: nnn: Update to 1.9.
* gnu/packages/admin.scm (nnn): Update to 1.9.
[source]: Switch to proper release tarball.
[native-inputs]: Add pkg-config.
[phases]: Remove ‘patch-curses-lib’ phase & ‘-Wl,-rpath=’ #:make-flags.
2018-08-16 05:15:20 +02:00
Tobias Geerinckx-Rice 004830ccf7
gnu: abcde: Update to 2.9.2.
* gnu/packages/cdrom.scm (abcde): Update to 2.9.2.
[source]: Patch correct version number in snippet.
2018-08-16 05:15:20 +02:00
Tobias Geerinckx-Rice 81001c8ca0
gnu: xterm: Update to 335.
* gnu/packages/xorg.scm (xterm): Update to 335.
2018-08-16 05:15:20 +02:00
Tobias Geerinckx-Rice 10082d303c
gnu: igt-gpu-tools: Order inputs.
* gnu/packages/admin.scm (igt-gpu-tools)[inputs]: Order alphabetically.
2018-08-16 03:10:08 +02:00
Tobias Geerinckx-Rice dca48d3cf1
gnu: igt-gpu-tools: Update to 1.23.
* gnu/packages/admin.scm (intel-gpu-tools): Redefine using
DEPRECATED-PACKAGE. Move the previous package definition from here...
(igt-gpu-tools): ...to here, and update to 1.23.
[name, source, description]: Adjust to new name.
[inputs]: Add openssl.
2018-08-16 03:10:08 +02:00
Tobias Geerinckx-Rice 4a6785f6c0
gnu: protobuf-c: Update to 1.3.1.
* gnu/packages/protobuf.scm (protobuf-c): Update to 1.3.1.
2018-08-16 02:46:21 +02:00
Tobias Geerinckx-Rice 5dc8437fc0
gnu: qemu: Update to 3.0.0 [mitigate CVE-2018-3639].
* gnu/packages/virtualization.scm (qemu): Update to 3.0.0.
[source]: Remove patch.
* gnu/packages/patches/qemu-CVE-2018-11806.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-16 02:41:42 +02:00
Tobias Geerinckx-Rice 6512b96570
gnu: stellarium: Remove redundant FILE-NAME.
* gnu/packages/astronomy.scm (stellarium)[source]: Remove FILE-NAME.
2018-08-16 02:40:59 +02:00
Tobias Geerinckx-Rice 3d9f26a0f8
gnu: stellarium: Use HTTPS home page.
* gnu/packages/astronomy.scm (stellarium)[home-page]: Use HTTPS.
2018-08-16 02:40:59 +02:00
Tobias Geerinckx-Rice e405c0bcd9
gnu: armadillo: Update to 9.100.4.
* gnu/packages/maths.scm (armadillo): Update to 9.100.4.
2018-08-16 02:40:59 +02:00
Tobias Geerinckx-Rice ed6c3dad53
gnu: s6-linux-utils: Update to 2.5.0.0.
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.0.0.
2018-08-16 02:40:59 +02:00
Tobias Geerinckx-Rice 6a7c1c43d7
gnu: s6-linux-init: Remove superfluous spaces from description.
* gnu/packages/skarnet.scm (s6-linux-init)[description]: Remove leading
and trailing spaces.
2018-08-16 02:40:58 +02:00
Tobias Geerinckx-Rice c43f5b8001
gnu: s6-linux-init: Update to 0.4.0.0.
* gnu/packages/skarnet.scm (s6-linux-init): Update to 0.4.0.0.
2018-08-16 02:40:58 +02:00
Tobias Geerinckx-Rice 5350d0cd99
gnu: s6-portable-utils: Update to 2.2.1.2.
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.1.2.
2018-08-16 02:40:58 +02:00
Tobias Geerinckx-Rice 510a83fb07
gnu: s6-rc: Update to 0.4.1.0.
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.1.0.
2018-08-16 02:40:58 +02:00
Tobias Geerinckx-Rice 33cd88ac0e
gnu: s6-networking: Update to 2.3.0.3.
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.0.3.
2018-08-16 02:40:57 +02:00
Tobias Geerinckx-Rice 0241dc181b
gnu: s6-dns: Update to 2.3.0.1.
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.0.1.
2018-08-16 02:40:57 +02:00
Tobias Geerinckx-Rice 5dc4b940df
gnu: s6: Update to 2.7.2.0.
* gnu/packages/skarnet.scm (s6): Update to 2.7.2.0.
2018-08-16 02:40:57 +02:00
Tobias Geerinckx-Rice 6b7fae5fae
gnu: execline: Update to 2.5.0.1.
* gnu/packages/skarnet.scm (execline): Update to 2.5.0.1.
2018-08-16 02:40:57 +02:00
Tobias Geerinckx-Rice c8e4b5d0ed
gnu: skalibs: Update to 2.7.0.0.
* gnu/packages/skarnet.scm (skalibs): Update to 2.7.0.0.
2018-08-16 02:40:56 +02:00
Tobias Geerinckx-Rice 7fe3a57ac5
gnu: mysql: Use HTTPS.
* gnu/packages/databases.scm (mysql)[source, home-page]: Use HTTPS.
2018-08-16 00:58:27 +02:00
Leo Famulari a1225ae867
gnu: tremc: Update URLs.
* gnu/packages/bittorrent.scm (tremc)[source, home-page]: Update URLs.
2018-08-15 15:26:06 -04:00
Leo Famulari 3a1002cefa
gnu: eyeD3: Update to 0.8.7.
* gnu/packages/mp3.scm (eyed3): Update to 0.8.7.
2018-08-15 15:26:06 -04:00
Leo Famulari 8473f8024c
gnu: clementine: Build with relevant GStreamer plugins.
* gnu/packages/music.scm (clementine)[inputs]: Add gst-plugins-good and
gst-libav.
2018-08-15 14:29:56 -04:00
Pierre Langlois 7bcc34050b
gnu: clementine: Fix creating initial database.
It seems a recent version of sqlite broke Clementine's first startup. It turns
out we can patch clementine to fix the problem instead of providing a different
sqlite package:
<https://github.com/clementine-player/Clementine/pull/5669>

* gnu/packages/databases.scm (sqlite-with-fts3): Remove.
* gnu/packages/music.scm (clementine)[inputs]: Replace sqlite-with-fts3 with
sqlite.
[source]: Add clementine-fix-sqlite.patch.
* gnu/packages/patches/clementine-fix-sqlite.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-15 14:29:56 -04:00
Pierre Langlois 8a63a4df51
gnu: clementine: Drop dependency on qtwebkit.
QtWebkit is optionally included in CMakeList.txt but isn't actually used
anywhere in the code.

* gnu/packages/music.scm (clementine)[inputs]: Remove qtwebkit.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-15 14:29:55 -04:00
Tobias Geerinckx-Rice c2f6c9ba26
gnu: aubio: Use HTTPS home page.
* gnu/packages/audio.scm (aubio)[source, home-page]: Use HTTPS.
2018-08-15 20:10:23 +02:00
Tobias Geerinckx-Rice 800e4f9415
gnu: acpid: Update to 2.0.30.
* gnu/packages/linux.scm (acpid): Update to 2.0.30.
2018-08-15 20:10:22 +02:00
Tobias Geerinckx-Rice 35a30cffa4
gnu: ghc-setlocale: Update to 1.0.0.6.
* gnu/packages/haskell.scm (ghc-setlocale): Update to 1.0.0.6.
2018-08-15 20:10:22 +02:00
Tobias Geerinckx-Rice 6ae35fea74
gnu: cvs-fast-export: Update to 1.44.
* gnu/packages/version-control.scm (cvs-fast-export): Update to 1.44.
[arguments]: Add ‘fix-setpython-PATH’ phase to do just that.
Remove obsolete python3 work-around from ‘remove-optimizations’ phase.
2018-08-15 20:10:22 +02:00
Tobias Geerinckx-Rice a1c86d1db4
gnu: python-txamqp: Update to 0.8.2.
* gnu/packages/python.scm (python-txamqp): Update to 0.8.2.
2018-08-15 20:10:22 +02:00
Tobias Geerinckx-Rice 3e9d393c84
gnu: inxi: Update to 3.0.20-1.
* gnu/packages/admin.scm (inxi): Update to 3.0.20-1.
2018-08-15 20:10:21 +02:00
Tobias Geerinckx-Rice 96e2ecb796
gnu: tremc: Update to 0.9.1.
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.1.
[source]: Use release tag.
2018-08-15 20:10:21 +02:00
Tobias Geerinckx-Rice 591ee071c6
gnu: tremc: Fix shebang.
* gnu/packages/bittorrent.scm (tremc)[inputs]: Add python.
2018-08-15 20:10:21 +02:00
Tobias Geerinckx-Rice ed8d31bf17
gnu: python-lzstring: Update to 1.0.4.
* gnu/packages/compression.scm (python-lzstring): Update to 1.0.4.
2018-08-15 20:10:20 +02:00
Tobias Geerinckx-Rice 9ecfe08e2e
gnu: subversion: Update to 1.10.2.
* gnu/packages/version-control.scm (subversion): Update to 1.10.2.
2018-08-15 20:10:20 +02:00
Oleg Pykhalov 44d085b4c6
gnu: licensecheck: Update to 3.0.36.
* gnu/packages/license.scm (licensecheck): Update to 3.0.36.
(perl-regexp-pattern-license): Update to 3.1.92.
2018-08-15 20:58:07 +03:00
Oleg Pykhalov 64140c95c8
gnu: restic: Update to 0.9.2.
* gnu/packages/backup.scm (restic): Update to 0.9.2.
2018-08-15 20:50:22 +03:00
Marius Bakke f07683b07c
gnu: python-django: Update to 1.11.15 [fixes CVE-2018-14574].
* gnu/packages/django.scm (python-django): Update to 1.11.15.
2018-08-15 15:11:33 +02:00
Marius Bakke aa3ad4b119
gnu: yubico-piv-tool: Update to 1.6.0 [fixes CVE-2018-14779, CVE-2018-14780].
* gnu/packages/security-token.scm (yubico-piv-tool): Update to 1.6.0.
[inputs]: Add GENGETOPT.
[native-inputs]: Add HELP2MAN.
2018-08-15 14:52:58 +02:00
Marius Bakke 5799e5ae07
gnu: opensc: Update to 0.18.0.
* gnu/packages/security-token.scm (opensc): Update to 0.18.0.
[arguments]: Add phase to disable test which fails in this release.
2018-08-15 14:45:45 +02:00
Marius Bakke fac39b99a5
gnu: libx264: Update to 20180810-2245.
* gnu/packages/video.scm (libx264): Update to 20180810-2245.
2018-08-15 14:33:57 +02:00
Kei Kebreau df1bc82b69
gnu: ocaml-gsl: Update to 1.22.0.
* gnu/packages/maths.scm (ocaml-gsl): Update to 1.22.0.
2018-08-15 08:11:58 -04:00
Nicolas Goaziou 28407818c0
gnu: cataclysm-dda: Allow localization.
* gnu/packages/games.scm (cataclysm-dda): Allow localization.
2018-08-15 10:41:48 +02:00
Tobias Geerinckx-Rice d87e547702
gnu: openssl@1.1: Update to 1.1.0i [fix CVE-2018-0737].
Also includes a fix for CVE-2018-0732, and a different approach to
fixing CVE-2018-0495.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0i.
[sources]: Remove CVE patches.
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0495.patch: Delete...
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0732.patch: ...both files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-08-15 00:35:53 +02:00
Tobias Geerinckx-Rice 34362ff6d6
gnu: perl-http-tiny: Update to 0.076.
* gnu/packages/web.scm (perl-http-tiny): Update to 0.076.
2018-08-15 00:32:16 +02:00
Tobias Geerinckx-Rice af514eadb2
gnu: f3: Update to 7.1.
* gnu/packages/disk.scm (f3): Update to 7.1.
[arguments]: Remove ‘fix-makefile’ phase.
Move installation of experimental (now called ‘extra’) tools to their
own phases instead of cleverly patching Makefile.
2018-08-15 00:32:15 +02:00
Tobias Geerinckx-Rice b3307bfdf9
gnu: f3: Don't use unstable tarball.
* gnu/packages/disk.scm (f3)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-15 00:32:15 +02:00
Tobias Geerinckx-Rice 34ba1b8fc5
gnu: perl-db-file: Update to 1.842.
* gnu/packages/databases.scm (perl-db-file): Update to 1.842.
2018-08-15 00:32:15 +02:00
Tobias Geerinckx-Rice 409dec3f29
gnu: aubio: Update to 0.4.6.
* gnu/packages/audio.scm (aubio): Update to 0.4.6.
[arguments]: Set reflexive RUNPATH.
2018-08-15 00:32:15 +02:00
Tobias Geerinckx-Rice d0b025ea69
gnu: lilv: Update to 0.24.4.
* gnu/packages/audio.scm (lilv): Update to 0.24.4.
2018-08-15 00:32:15 +02:00
Tobias Geerinckx-Rice c3da234f60
gnu: sratom: Update to 0.6.2.
* gnu/packages/audio.scm (sratom): Update to 0.6.2.
2018-08-15 00:32:14 +02:00
Tobias Geerinckx-Rice 3416f65fbd
gnu: serd: Update to 0.30.0.
* gnu/packages/rdf.scm (serd): Update to 0.30.0.
2018-08-15 00:32:14 +02:00
Tobias Geerinckx-Rice 61d996b921
gnu: memcached: Fix typos in description.
* gnu/packages/databases.scm (memcached)[synopsis, description]:
Hyphenate.
2018-08-15 00:30:04 +02:00
Leo Famulari feccc81013
gnu: gdm: Fix CVE-2018-14424.
* gnu/packages/patches/gdm-CVE-2018-14424.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gdm): Use it.
2018-08-14 16:52:48 -04:00
Leo Famulari e09dbdeb78
gnu: samba: Update to 4.8.4 [fixes CVE-2018-{1139,1130,10858,10918,10919}].
* gnu/packages/samba.scm (samba): Update to 4.8.4.
2018-08-14 16:52:07 -04:00
Ricardo Wurmus 06a45ad6c0
gnu: Add r-orddom.
* gnu/packages/cran.scm (r-orddom): New variable.
2018-08-14 17:32:53 +02:00
Tobias Geerinckx-Rice b432c05203
gnu: memcached: Update to 1.5.10.
* gnu/packages/databases.scm (memcached): Update to 1.5.10.
2018-08-14 15:54:31 +02:00
Tobias Geerinckx-Rice 0d5c879d89
gnu: ola: Update to 0.10.7.
* gnu/packages/lighting.scm (ola): Update to 0.10.7.
2018-08-14 15:54:31 +02:00
Tobias Geerinckx-Rice 23ae96d5a2
gnu: deutex: Update to 5.1.2.
* gnu/packages/game-development.scm (deutex): Update to 5.1.2.
2018-08-14 15:54:31 +02:00
Tobias Geerinckx-Rice e9ce64250a
gnu: password-store: Use INSTALL-FILE.
* gnu/packages/password-utils.scm (password-store)[arguments]:
Substitute a more concise INSTALL-FILE invocation for COPY-FILE.
2018-08-14 15:54:30 +02:00
Tobias Geerinckx-Rice 7fcb3935fa
gnu: discount: Use HTTPS home page.
* gnu/packages/markup.scm (discount)[home-page]: Use HTTPS.
2018-08-14 15:54:30 +02:00
Tobias Geerinckx-Rice eed0f1e872
gnu: python-ndg-httpsclient: Tweak description.
* gnu/packages/python-web.scm (python-ndg-httpsclient)[description]:
Add some punctuation.
2018-08-14 15:54:30 +02:00
Tobias Geerinckx-Rice 9b1125bc6c
gnu: acpica: Update to 20180810.
* gnu/packages/admin.scm (acpica): Update to 20180810.
2018-08-14 15:54:30 +02:00
Tobias Geerinckx-Rice b92302fd6c
gnu: translate-shell: Update to 0.9.6.8.
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.8.
[source]: Remove patch.
* gnu/packages/patches/translate-shell-fix-curl-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-14 15:54:29 +02:00
Tobias Geerinckx-Rice 422a6cd4c3
gnu: the-silver-searcher: Use HTTPS home page.
* gnu/packages/code.scm (the-silver-searcher)[source, home-page]: Use
HTTPS.
2018-08-14 15:54:29 +02:00
Tobias Geerinckx-Rice ffa822278c
gnu: the-silver-searcher: Update to 2.2.0.
* gnu/packages/code.scm (the-silver-searcher): Update to 2.2.0.
2018-08-14 15:54:29 +02:00
Tobias Geerinckx-Rice 8f946a1823
gnu: calf: Update to 0.90.1.
* gnu/packages/audio.scm (calf): Update to 0.90.1.
[source]: Use HTTPS.
2018-08-14 15:54:29 +02:00
Tobias Geerinckx-Rice 599a88cc19
gnu: qsynth: Update to 0.5.2.
* gnu/packages/audio.scm (qsynth): Update to 0.5.2.
2018-08-14 15:54:29 +02:00
Tobias Geerinckx-Rice 90a4e589e0
gnu: gnuastro: Update to 0.7.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.7.
2018-08-14 15:54:28 +02:00
Tobias Geerinckx-Rice 88e1ac17ed
gnu: iproute2: Update to 4.18.0.
* gnu/packages/linux.scm (iproute): Update to 4.18.0.
2018-08-14 15:54:28 +02:00
Tobias Geerinckx-Rice b31e67f149
gnu: di: Update to 4.47.
* gnu/packages/admin.scm (di): Update to 4.47.
2018-08-14 15:54:28 +02:00
Tobias Geerinckx-Rice 1b08647e9a
gnu: perl-libwww: Update to 6.35.
* gnu/packages/web.scm (perl-libwww): Update to 6.35.
[native-inputs]: Add perl-test-fatal, perl-test-needs, and
perl-test-requiresinternet.
[propagated-inputs]: Add perl-try-tiny.
2018-08-14 15:54:28 +02:00
Tobias Geerinckx-Rice 24dd949c83
gnu: libpcap: Update to 1.9.0.
* gnu/packages/admin.scm (libpcap): Update to 1.9.0.
[arguments]: Drop ‘--with-pcap=linux’ ./configure flag.
[license]: Update list.
2018-08-14 15:54:27 +02:00
Ricardo Wurmus 689aacc12f
gnu: Add gffread.
* gnu/packages/bioinformatics.scm (gffread): New variable.
2018-08-14 12:48:14 +02:00
Pierre Neidhardt a87ee0e41c
gnu: Add hcxdumptool.
* gnu/packages/networking.scm (hcxdumptool): New variable.
2018-08-14 12:00:18 +02:00
Pierre Neidhardt 5bd3134e04
gnu: Add hcxtools.
* gnu/packages/networking.scm (hcxtools): New variable.
2018-08-14 12:00:18 +02:00
Pierre Neidhardt eb4ffe9b87
gnu: Add hashcat-utils.
* gnu/packages/password-utils.scm (hashcat-utils): New variable.
2018-08-14 12:00:18 +02:00
Pierre Neidhardt c10aa27866
gnu: Add hashcat.
* gnu/packages/password-utils.scm (hashcat): New variable.
2018-08-14 12:00:18 +02:00
Ricardo Wurmus 242519ce70
gnu: Add r-circus.
* gnu/packages/bioinformatics.scm (r-circus): New variable.
2018-08-14 11:29:17 +02:00
Ricardo Wurmus 4646d18eb7
gnu: Add r-hash.
* gnu/packages/cran.scm (r-hash): New variable.
2018-08-14 11:28:52 +02:00
Pierre Neidhardt 3d4908a77b
gnu: texlive-latex-l3packages: Fix missing files.
* gnu/packages/tex.scm (texlive-latex-l3packages): Actually install the files.
2018-08-14 10:41:08 +02:00
Kei Kebreau 9285f8bbae
gnu: coda: Update to 2.19.
* gnu/packages/maths.scm (coda): Update to 2.19.
2018-08-13 22:18:09 -04:00
Ricardo Wurmus b86c019efb
Merge branch 'staging' into core-updates 2018-08-13 20:39:32 +02:00
Leo Famulari ff6436307e
gnu: BIND: Use HTTPS source URL.
* gnu/packages/dns.scm (isc-bind)[source]: Use HTTPS URL.
2018-08-13 12:54:34 -04:00
Leo Famulari 8198b3db0b
gnu: isc-dhcp: Update bundled BIND to 9.11.4-P1.
* gnu/packages/admin.scm (isc-dhcp): Update bundled BIND to 9.11.4-P1.
[home-page, inputs, source]: Use HTTPS URLs.
2018-08-13 12:54:33 -04:00
Björn Höfling 18e56ad7eb
gnu: aegisub: Fix build.
* gnu/packages/patches/aegisub-icu59-include-unistr.patch: New file.
* gnu/lokal.mk (dist_patch_DATA): Register it.
* gnu/packages/video.scm (aegisub)[source]: Use patch.
[arguments]: Add CXXFLAGS, Return #t from fix-ldflags phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-13 11:43:04 -04:00
Kenny Ballou 504e26ed32
gnu: ansible: update to 2.5.7
* gnu/packages/admin.scm (ansible): Update to 2.5.7.
[arguments, native-inputs, inputs]: Use Python 3.
[native-inputs, inputs]: Replace python-pycrypto with python-cryptography.

Co-authored-by: Leo Famulari <leo@famulari.name>
2018-08-13 11:25:20 -04:00
Konrad Hinsen 19006c9231
gnu: emacs-racket-mode: Update to 0.0.2-2.1b78827.
* gnu/packages/emacs.scm (emacs-racket-mode): Update to 0.0.2-2.1b78827.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-13 11:16:20 -04:00
Alex Branham f236d99804
gnu: r-ggplot2: Update to 3.0.0
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.0.0
[propagated-inputs]: Add r-mgcv, r-rlang, r-viridislite, and r-withr.
[home-page]: Update URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-13 10:55:18 -04:00
Pierre Neidhardt b7d4247d85
gnu: emacs-helm-eww: Update to 20180725.
* gnu/packages/emacs.scm (emacs-helm-eww): Update to 20180725.
2018-08-13 16:37:30 +02:00
Timothy Sample e3fc9bcce2
gnu: racket: Ignore bytecode checksums in the store.
Fixes <https://debbugs.gnu.org/30680>.

* gnu/packages/patches/racket-store-checksum-override.patch: New file.
* gnu/packages/scheme.scm (racket)[sources]: Add it.
2018-08-12 20:20:36 -04:00
Leo Famulari 5a0696b2e3
gnu: borg: Update to 1.1.7.
* gnu/packages/backup.scm (borg): Update to 1.1.7.
2018-08-12 19:57:22 -04:00
Tobias Geerinckx-Rice e08474d650
gnu: fortune-mod: Clean up empty directory.
* gnu/packages/games.scm (fortune-mod)[arguments]: RMDIR ‘games/’ after
emptying it.
2018-08-13 01:51:48 +02:00
Tobias Geerinckx-Rice b3ce80d20f
gnu: libwacom: Update to 0.31.
* gnu/packages/xdisorg.scm (libwacom): Update to 0.31.
2018-08-13 01:51:48 +02:00
Tobias Geerinckx-Rice e38a80120e
gnu: python-wsgiproxy2: Update to 0.4.4.
* gnu/packages/python-web.scm (python-wsgiproxy2): Update to 0.4.4.
[arguments]: Remove. Restkit is not longer supported.
[native-inputs]: Remove unzip, python-nose, and python-coverage.
Add python-webtest.
[propagated-inputs]: Add python-requests and python-urllib3.
2018-08-13 01:51:48 +02:00
Tobias Geerinckx-Rice 57d5d3dade
gnu: python-ndg-httpsclient: Update to 0.5.1.
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.5.1.
2018-08-13 01:51:47 +02:00
Tobias Geerinckx-Rice 247d4e7271
gnu: python-pep8: Use HTTPS home page.
Also add a comment about 1.7.1. This doesn't warrant a changelog entry,
so you never read this.

* gnu/packages/python.scm (python-pep8)[home-page]: Use HTTPS.
2018-08-13 01:51:47 +02:00
Tobias Geerinckx-Rice 52135e598c
gnu: strongswan: Update to 5.6.3 [fixes CVE-2018-{10811,5388}].
* gnu/packages/networking.scm (strongswan): Update to 5.6.3.
2018-08-13 01:51:47 +02:00
Tobias Geerinckx-Rice 07f450b2b0
gnu: ethtool: Update to 4.17.
* gnu/packages/networking.scm (ethtool): Update to 4.17.
2018-08-13 01:51:47 +02:00
Tobias Geerinckx-Rice 95bf07804a
gnu: ghc-parsec-numbers: Use HTTPS home page.
* gnu/packages/haskell.scm (ghc-parsec-numbers)[home-page]: Use HTTPS.
2018-08-13 01:51:46 +02:00
Tobias Geerinckx-Rice c8e15c9fb9
gnu: git-annex: Update to 6.20180807.
* gnu/packages/version-control.scm (git-annex): Update to 6.20180807.
2018-08-12 20:15:35 +02:00
Tobias Geerinckx-Rice d877e0d84c
gnu: xmobar: Update to 0.27.
* gnu/packages/wm.scm (xmobar): Update to 0.27.
[inputs]: Add ghc-parsec-numbers.
2018-08-12 20:15:34 +02:00
Tobias Geerinckx-Rice fe0fb890ea
gnu: Add ghc-parsec-numbers.
* gnu/packages/haskell.scm (ghc-parsec-numbers): New public variable.
2018-08-12 20:15:34 +02:00
Marius Bakke 25bd72678a
gnu: gcc@5: Build with isl@0.18.
* gnu/packages/gcc.scm (gcc-5)[inputs]: Change ISL to ISL-0.18.
(isl-0.18): New public variable.
2018-08-12 14:09:28 +02:00
Arun Isaac fab8a9f9c3
gnu: ccid: Move pcsc-lite from inputs to native-inputs.
pcsc-lite only provides the headers to build ccid. So, it is sufficient that
it be a native-input.

* gnu/packages/security-token.scm (ccid)[inputs]: Move pcsc-lite to ...
[native-inputs]: ... here.
2018-08-12 02:50:21 +05:30
Tobias Geerinckx-Rice 7e72f5471b
gnu: discount: Update to 2.2.4.
* gnu/packages/markup.scm (discount): Update to 2.2.4.
2018-08-11 18:55:46 +02:00
Tobias Geerinckx-Rice 743c5be2d6
gnu: discount: Remove bogus FILE-NAME.
The upstream name is fine.

* gnu/packages/markup.scm (discount)[source]: Remove FILE-NAME.
2018-08-11 18:55:46 +02:00
Tobias Geerinckx-Rice b01a879007
gnu: jpegoptim: Update to 1.4.6.
* gnu/packages/image.scm (jpegoptim): Update to 1.4.6.
2018-08-11 18:55:46 +02:00
Tobias Geerinckx-Rice aeb6d9a617
gnu: angband: Update to 4.1.3.
* gnu/packages/games.scm (angband): Update to 4.1.3.
2018-08-11 18:55:46 +02:00
Tobias Geerinckx-Rice abf06df2d5
gnu: fortune-mod: Return #t from all phases.
* gnu/packages/games.scm (fortune-mod)[arguments]: Return #t rather than
undefined from phases.
2018-08-11 18:55:46 +02:00
Tobias Geerinckx-Rice 3a2f1d93df
gnu: perl-email-simple: Update to 2.216.
* gnu/packages/mail.scm (perl-email-simple): Update to 2.216.
2018-08-11 18:55:45 +02:00
Tobias Geerinckx-Rice d2b8900f58
gnu: perl-lingua-en-tagger: Update to 0.29.
* gnu/packages/language.scm (perl-lingua-en-tagger): Update to 0.29.
2018-08-11 18:55:45 +02:00
Tobias Geerinckx-Rice 5635b4d67d
gnu: perl-glib: Update to 1.327.
* gnu/packages/glib.scm (perl-glib): Update to 1.327.
2018-08-11 18:55:45 +02:00
Tobias Geerinckx-Rice 424fd76828
gnu: fortune-mod: Update to 2.6.1.
* gnu/packages/games.scm (fortune-mod): Update to 2.6.1.
2018-08-11 18:01:18 +02:00
Tobias Geerinckx-Rice 7e1d376d30
gnu: fortune-mod: Don't use unstable tarball.
* gnu/packages/games.scm (fortune-mod)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-11 18:01:18 +02:00
Tobias Geerinckx-Rice 2f9891725d
gnu: perl-file-mimeinfo: Update to 0.29.
* gnu/packages/freedesktop.scm (perl-file-mimeinfo): Update to 0.29.
2018-08-11 18:01:18 +02:00
Tobias Geerinckx-Rice 9aba9b1278
Migrate search.cpan.org home pages to metacpan.org.
The venerable search.cpan.org has retired[0].

[0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html

* guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs.
Update all previously generated ones in (gnu packages) to their
canonical new homes.
2018-08-11 17:22:31 +02:00
Tobias Geerinckx-Rice ab45b38fea
gnu: Use static & unversioned CPAN home pages.
Constructing home pages to be version-specific is not something we
really want or do elsewhere, and interferers with mass updates like the
one I'm about to make.

* gnu/packages/glib.scm (perl-net-dbus-glib)[home-page]: Use canonical
home page.
* gnu/packages/perl-check.scm (perl-test-nowarnings, perl-test-output)
(perl-test-simple, perl-test-tester)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-benchmark-timer, perl-clone)
(perl-digest-sha1, perl-file-which, perl-getopt-tabular, perl-io-string)
(perl-ipc-run3, perl-probe-perl, perl-regexp-common, perl-sys-cpu)
[home-page]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[home-page]: Likewise.
* gnu/packages/tls.scm (perl-net-ssleay)[home-page]: Likewise.
* gnu/packages/web.scm (perl-www-curl)[home-page]: Likewise.
* gnu/packages/xml.scm (perl-xml-dom)[home-page]: Likewise.
* gnu/packages/xorg.scm (perl-x11-protocol-other)[home-page]: Likewise.
2018-08-11 17:22:31 +02:00
Tobias Geerinckx-Rice 2db5f9b68a
gnu: perl-libxml: Fix description.
Descriptions were of the wrong (sub)package, XML::Parser::PerlSAX.

* gnu/packages/xml.scm (perl-libxml)[synopsis, description, home-page]:
Replace with the correct (upstream) ones.
2018-08-11 17:22:31 +02:00
Tobias Geerinckx-Rice f16faf0f4f
gnu: perl-ev: Use INVOKE.
* gnu/packages/libevent.scm (perl-ev)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-08-11 17:22:30 +02:00
Tobias Geerinckx-Rice aadfc7b02b
gnu: perl-uri-template: Update to 0.23.
* gnu/packages/web.scm (perl-uri-template): Update to 0.23.
2018-08-11 17:22:30 +02:00
Tobias Geerinckx-Rice 583fa791e9
gnu: python-lzo: Update to 1.12.
* gnu/packages/compression.scm (python-lzo): Update to 1.12.
2018-08-11 17:22:30 +02:00
Arun Isaac d514f6015e
gnu: zathura: Update to 0.4.0.
* gnu/packages/pdf.scm (zathura): Update to 0.4.0.
2018-08-11 14:40:53 +05:30
Tobias Geerinckx-Rice 62ab60aad6
gnu: password-store: Use HTTPS home page.
* gnu/packages/password-utils.scm (password-store)[home-page]: Use HTTPS.
2018-08-11 05:50:38 +02:00
Tobias Geerinckx-Rice da13cc2ebb
gnu: gtksourceview: Update to 3.24.8.
* gnu/packages/gtk.scm (gtksourceview): Update to 3.24.8.
2018-08-11 05:50:37 +02:00
Tobias Geerinckx-Rice e12df2c6f5
gnu: ddclient: Update to 3.9.0.
* gnu/packages/dns.scm (ddclient): Update to 3.9.0.
[inputs]: Add perl-data-validate-ip.  Order alphabetically.
2018-08-11 05:50:37 +02:00
Tobias Geerinckx-Rice c7727a8bcd
gnu: Add perl-data-validate-ip.
* gnu/packages/networking.scm (perl-data-validate-ip): New public
variable.
2018-08-11 05:50:37 +02:00
Tobias Geerinckx-Rice e83745a958
gnu: light: Update to 1.1.2.
* gnu/packages/linux.scm (light): Update to 1.1.2.
2018-08-11 05:02:20 +02:00
Tobias Geerinckx-Rice 800248fe59
gnu: virt-viewer: Update to 7.0.
* gnu/packages/spice.scm (virt-viewer): Update to 7.0.
2018-08-11 05:02:20 +02:00
Tobias Geerinckx-Rice 206feae736
gnu: spice-gtk: Update to 0.35.
* gnu/packages/spice.scm (spice-gtk): Update to 0.35.
2018-08-11 05:02:19 +02:00
Tobias Geerinckx-Rice a0b5c99861
gnu: proxychains-ng: Update to 4.13.
* gnu/packages/networking.scm (proxychains-ng): Update to 4.13.
[source]: Update download URI.  Goodbye, sweet hash.
[arguments]: Add CC=gcc to the environment, not only to #:make-flags.
2018-08-11 03:08:46 +02:00
Tobias Geerinckx-Rice 93d5061991
gnu: python-gitpython: Update to 2.1.11.
* gnu/packages/version-control.scm (python-gitpython): Update to 2.1.11.
2018-08-11 03:08:46 +02:00
Tobias Geerinckx-Rice 64530ad8ae
gnu: mpop: Update to 1.2.8.
* gnu/packages/mail.scm (mpop): Update to 1.2.8.
[arguments]: Remove.
2018-08-11 03:08:45 +02:00
Tobias Geerinckx-Rice 1497b95c7b
gnu: mpop: Update home page.
* gnu/packages/mail.scm (mpop)[source, home-page]: Update URIs.
2018-08-11 03:08:45 +02:00
Tobias Geerinckx-Rice 3e9aa5cff3
gnu: password-store: Update to 1.7.3.
* gnu/packages/password-utils.scm (password-store): Update to 1.7.3.
2018-08-11 03:08:45 +02:00
Tobias Geerinckx-Rice cb9da5d171
gnu: asio: Update to 1.12.1.
* gnu/packages/networking.scm (asio): Update to 1.12.1.
[source]: Use upstream release tarballs.
[native-inputs, arguments]: Remove cruft needed to build from git.
2018-08-11 03:08:45 +02:00
Mark H Weaver 28e14a6726
gnu: linux-libre: Update to 4.17.14.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.14.
(%linux-libre-hash): Update hash.
2018-08-10 20:33:33 -04:00
Mark H Weaver 36c41daa34
gnu: linux-libre@4.14: Update to 4.14.62.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.62.
(%linux-libre-4.14-hash): Update hash.
2018-08-10 20:32:43 -04:00
Mark H Weaver 85e267fdba
gnu: linux-libre@4.9: Update to 4.9.119.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.119.
2018-08-10 20:31:56 -04:00
Mark H Weaver 8c6770057e
gnu: linux-libre@4.4: Update to 4.4.147.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.147.
2018-08-10 20:31:14 -04:00
Tobias Geerinckx-Rice 8502ff7a1a
gnu: mew: Use HTTPS.
* gnu/packages/mail.scm (mew)[source, home-page]: Use HTTPS.
2018-08-11 02:00:46 +02:00
Tobias Geerinckx-Rice fb5fedfe7e
gnu: otf2: Edit description.
* gnu/packages/profiling.scm (otf2)[description]: Fix typo and use @dfn.
2018-08-11 02:00:46 +02:00
Tobias Geerinckx-Rice 895789ea78
gnu: po4a: Update to 0.54.
* gnu/packages/gettext.scm (po4a): Update to 0.54.
[arguments]: Remove ‘set-search-path’ and ‘fix-builder’ phases.
Coalesce ‘disable-...-test’ phases into one ‘disable-failing-tests’
phase, update their numbering, and re-enable the ‘yaml’ test.
[native-inputs]: Add perl-yaml-tiny test dependency.
2018-08-11 02:00:45 +02:00
Tobias Geerinckx-Rice c327bb4463
gnu: dialog: Update to 1.3-20180621.
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20180621.
2018-08-11 02:00:45 +02:00
Tobias Geerinckx-Rice 82536c4877
gnu: opari2: Update to 2.0.3.
* gnu/packages/profiling.scm (opari2): Update to 2.0.3.
2018-08-11 02:00:45 +02:00
Tobias Geerinckx-Rice c6cb111b23
gnu: opari2: Remove redundant code.
* gnu/packages/profiling.scm (opari2)[arguments]: Remove ‘licence’
installation phase now handled by the build system.
2018-08-11 02:00:44 +02:00
Tobias Geerinckx-Rice e0d5712f64
gnu: xfig: Update to 3.2.7a.
* gnu/packages/xfig.scm (xfig): Update to 3.2.7a.
2018-08-11 02:00:44 +02:00
Tobias Geerinckx-Rice 8faa9df7f3
gnu: perl-net-dns: Update home page.
* gnu/packages/networking.scm (perl-net-dns)[home-page]: Use new (and
HTTPS) URI.
[source]: Add it to the list of download locations.
2018-08-11 02:00:44 +02:00
Tobias Geerinckx-Rice 6e542e195d
gnu: perl-net-dns: Update to 1.17.
* gnu/packages/networking.scm (perl-net-dns): Update to 1.17.
2018-08-11 02:00:44 +02:00
Tobias Geerinckx-Rice 9a3c345b3f
gnu: r-cowplot: Update to 0.9.3.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.3.
2018-08-11 02:00:43 +02:00
Tobias Geerinckx-Rice b3543e6c79
gnu: Add oath-toolkit.
* gnu/packages/authentication.scm: New file.
(oath-toolkit): New public variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add the new file.
2018-08-11 02:00:43 +02:00
Tobias Geerinckx-Rice fc79867da9
gnu: ccrypt: Update to 1.11.
* gnu/packages/crypto.scm (ccrypt): Update to 1.11.
2018-08-11 02:00:43 +02:00
Nicolas Goaziou c5ca9b96cb
gnu: mame: Update to 0.200.
* gnu/packages/emulators.scm (mame): Update to 0.200.
[arguments]: Fix missing includes in source.
2018-08-11 00:05:24 +02:00
Leo Famulari 7598b678fa
gnu: bzip2: Use archived source and home-page URLs.
* gnu/packages/compression.scm (bzip2)[source, home-page]: Update URLs.
2018-08-10 16:42:01 -04:00
Marius Bakke 67d7c55cff
gnu: p11-kit: Update to 0.23.13.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.13.
2018-08-10 21:44:46 +02:00
Marius Bakke 81873eda4d
gnu: libsoup: Update to 2.62.3.
* gnu/packages/gnome.scm (libsoup): Update to 2.62.3.
2018-08-10 21:40:17 +02:00
Ricardo Wurmus a3baaaa07a
gnu: meson: Update to 0.47.1.
* gnu/packages/build-tools.scm (meson): Update to 0.47.1.
* gnu/packages/patches/meson-for-build-rpath.patch: Adjust.
2018-08-10 16:01:06 +02:00
Marius Bakke 7b38f045c0
Merge branch 'master' into staging 2018-08-10 15:32:51 +02:00
Marius Bakke 369d15674c
gnu: mariadb: Update to 10.1.35 [security fixes].
This release fixes CVE-2018-3058, CVE-2018-3063, CVE-2018-3064 and CVE-2018-3066.
See <https://mariadb.com/kb/en/library/mariadb-10135-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.35.
2018-08-10 15:23:50 +02:00
Marius Bakke 516fe8deb5
gnu: postgresql: Update to 10.5 [fixes CVE-2018-10915, CVE-2018-10925].
* gnu/packages/databases.scm (postgresql): Update to 10.5.
2018-08-10 15:23:50 +02:00
Ricardo Wurmus bedf0535ff
gnu: inkscape: Add poppler compatibility patch.
* gnu/packages/inkscape.scm (inkscape)[source]: Add second poppler
compatibility patch.
2018-08-10 09:14:51 +02:00
Ricardo Wurmus 9611080117
gnu: fontforge: Build with Python 2.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Replace python-wrapper with
python-2.
2018-08-10 09:14:37 +02:00
Jan Nieuwenhuizen 256d5c6e33
gnu: mes: Update to 0.17.
* gnu/packages/mes.scm (mes): Update to 0.17.
2018-08-10 08:32:11 +02:00
Tobias Geerinckx-Rice ad2f7b8cec
gnu: sord: Update to 0.16.2.
* gnu/packages/rdf.scm (sord): Update to 0.16.2.
2018-08-10 01:46:02 +02:00
Tobias Geerinckx-Rice 27114bc3e0
gnu: otf2: Update to 2.1.1.
* gnu/packages/profiling.scm (otf2): Update to 2.1.1.
2018-08-10 01:45:00 +02:00
Tobias Geerinckx-Rice dd82138032
gnu: xmonad: Update to 0.14.
* gnu/packages/wm.scm (xmonad): Update to 0.14.
[inputs]: Add ghc-semigroups.
2018-08-10 01:45:00 +02:00
Tobias Geerinckx-Rice f780572d79
gnu: ghc-xmonad-contrib: Update to 0.14.
* gnu/packages/wm.scm (ghc-xmonad-contrib): Update to 0.14.
2018-08-10 01:44:02 +02:00
Tobias Geerinckx-Rice 8c0be00ac0
gnu: Use HTTPS for xmonad.org home pages.
* gnu/packages/wm.scm (ghc-xmonad-contrib, xmonad)[home-page]: Use
HTTPS.
2018-08-10 01:44:02 +02:00
Tobias Geerinckx-Rice 702c0e504a
gnu: bear: Update to 2.3.12.
* gnu/packages/build-tools.scm (bear): Update to 2.3.12.
2018-08-10 01:44:01 +02:00
Tobias Geerinckx-Rice f85af5abc0
gnu: bear: Don't use unstable tarball.
* gnu/packages/build-tools.scm (bear)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-10 01:44:01 +02:00
Tobias Geerinckx-Rice 781e515877
gnu: lynx: Update to 2.8.9rel.1.
* gnu/packages/web-browsers.scm (lynx): Update to 2.8.9rel.1.
2018-08-10 01:44:00 +02:00
Leo Famulari 19a3e7f84a
gnu: cgit: Update to 1.2.1 [fixes CVE-2018-14912].
* gnu/packages/version-control.scm (cgit): Update to 1.2.1.
[inputs]: Use the source of GIT.
2018-08-09 18:21:47 -04:00
Leo Famulari 4e23e8d809
gnu: wpa_supplicant: Fix CVE-2018-14526.
* gnu/packages/patches/wpa-supplicant-CVE-2018-14526.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Use it.
2018-08-09 18:18:03 -04:00
Nicolas Goaziou ddad1f74b3
gnu: snap: Update to 4.2.1.3.
* gnu/packages/education.scm (snap): Update to 4.2.1.3.
2018-08-10 00:07:00 +02:00
Nicolas Goaziou 9f1a2be2ce
gnu: python-duniterpy: Update home page.
* gnu/packages/finance.scm (python-duniterpy) [home-page]: Update URL.
2018-08-09 23:37:44 +02:00
Nicolas Goaziou 7dab3e61c8
gnu: python-duniterpy: Update to 0.43.7.
* gnu/packages/finance.scm (python-duniterpy): Update to 0.43.7.
[source]: Change upstream repository, which moved to a Gitlab instance.
[arguments]: Remove phase removing a failing test, no longer needed.
2018-08-09 23:34:07 +02:00
Ricardo Wurmus bcdee2dc33
gnu: polkit: Update to 0.115 [fixes CVE-2018-1116].
* gnu/packages/polkit.scm (polkit): Update to 0.115.
[origin]: Adjust snippet.
[inputs]: Replace mozjs with mozjs-52.
* gnu/packages/patches/polkit-drop-test.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.

(cherry picked from commit 50afd712312a4b9fa42d7f9d03464e542b3aeb75)
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-08-09 21:19:47 +02:00
Ricardo Wurmus 192a59d0f6
gnu: Add mozjs-52.
* gnu/packages/gnuzilla.scm (mozjs-52): New variable.

(cherry picked from commit f67db495aa6e29692e368a13130a40541d5d8273)
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-08-09 21:19:47 +02:00
Marius Bakke 536b32745e
gnu: gusb: Update to 0.3.0.
* gnu/packages/gnome.scm (gusb): Update to 0.3.0.
[source](uri): Adjust tarball name.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
[arguments]: Remove #:phases.
2018-08-09 21:19:47 +02:00
Marius Bakke 88c54b1b75
gnu: xorg-server: Update to 1.20.1.
* gnu/packages/patches/xorg-server-rotate-fb.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.1.
[source](patches): Remove 'xorg-server-rotate-fb.patch'.
2018-08-09 21:19:47 +02:00
Marius Bakke f71561567b
gnu: libgit2: Update to 0.26.6.
* gnu/packages/version-control.scm (libgit2): Update to 0.26.6.
2018-08-09 21:19:46 +02:00
Marius Bakke 70dcf9c9c3
gnu: lftp: Update to 4.8.4.
* gnu/packages/ftp.scm (lftp): Update to 4.8.4.
[arguments]: End phases on #t.
2018-08-09 21:19:46 +02:00
Marius Bakke 16fcda9524
gnu: libmspack: Update to 0.7.1.
* gnu/packages/compression.scm (libmspack): Update to 0.7.1.
2018-08-09 21:19:46 +02:00
Marius Bakke a066680e20
gnu: qemu: Update to 2.12.1.
* gnu/packages/virtualization.scm (qemu): Update to 2.12.1.
2018-08-09 21:19:46 +02:00
Rutger Helling 00bf557156
gnu: c-toxcore: Update to 0.2.5.
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.5.
2018-08-09 16:47:37 +02:00
Leo Famulari ce5c3ecbd5
gnu: Remove go-github-com-davidjpeacock-cli.
* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli): Remove variable.
2018-08-09 08:13:09 -04:00
Leo Famulari 3e21f717a5
gnu: kurly: Removed unused input.
* gnu/packages/curl.scm (kurly)[inputs]: Remove go-github-com-davidjpeacock-cli.
2018-08-09 08:13:08 -04:00
Leo Famulari 9e286eb1b5
gnu: Add VBinDiff.
* gnu/packages/patchutils.scm (vbindiff): New variable.
2018-08-09 08:07:35 -04:00
Danny Milosavljevic c1cdadc6ba
gnu: mrustc: Update to 0.8.0.
* gnu/packages/rust.scm (mrustc): Update to 0.8.0.
2018-08-09 07:50:57 +02:00
Tobias Geerinckx-Rice ea6937ad8a
gnu: kurly: Update to 1.2.2.
Update both the project home page & the package version in a single
commit because of Go.

From the previous home page[0]:

 “2018-06-12 - THE KURLY PROJECT HAS MOVED HOME!
  kurly can now be found at GitLab [...]”

[0]: https://github.com/davidjpeacock/kurly

* gnu/packages/curl.scm (kurly): Update to 1.2.2.
[source, home-page]: Update URIs.
[arguments]: Likewise.  Adjust location of ‘kurly.man’.
[inputs]: Add go-github-com-urfave-cli.
2018-08-09 02:20:25 +02:00
Tobias Geerinckx-Rice 665fcd32af
gnu: java-snappy: Fix description.
* gnu/packages/compression.scm (java-snappy)[description]: Fix typos.
2018-08-09 02:19:10 +02:00
Tobias Geerinckx-Rice d06160b0ac
gnu: java-snappy: Update to 1.1.7.2.
* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.2.
2018-08-09 02:19:09 +02:00
Tobias Geerinckx-Rice cd4540ee41
gnu: libodfgen: Update to 0.1.7.
* gnu/packages/libreoffice.scm (libodfgen): Update to 0.1.7.
[source]: Update URI.
2018-08-09 02:19:09 +02:00
Tobias Geerinckx-Rice b69cbf9ac0
gnu: bind: Update to 9.12.2-P1.
* gnu/packages/dns.scm (isc-bind): Update to 9.12.2-P1.
2018-08-09 02:19:09 +02:00
Tobias Geerinckx-Rice db11d5729f
gnu: numactl: Update to 2.0.12.
* gnu/packages/linux.scm (numactl): Update to 2.0.12.
2018-08-09 02:19:08 +02:00
Tobias Geerinckx-Rice 0b4f876737
gnu: numactl: Update home page.
From the project mailing list[0]:

 “The old libnuma website hosted at oss.sgi.com is now gone as that
  website no longer exists. Everything for libnuma/numactl is now at
  GitHub [...]”

[0]: https://www.spinics.net/lists/linux-numa/msg01178.html

* gnu/packages/linux.scm (numactl)[source, home-page]: Update URIs.
2018-08-09 02:18:21 +02:00
Tobias Geerinckx-Rice 9040ca1835
gnu: libnftnl: Update to 1.1.1.
* gnu/packages/linux.scm (libnftnl): Update to 1.1.1.
2018-08-09 02:17:26 +02:00
Tobias Geerinckx-Rice 05a40469c3
gnu: alpine: Update to 2.21.9999.
* gnu/packages/mail.scm (alpine): Update to 2.21.9999.
2018-08-09 02:17:26 +02:00
Tobias Geerinckx-Rice 5c0f11c29c
gnu: mingw-w64: Update to 5.0.4.
* gnu/packages/mingw.scm (mingw-w64): Update to 5.0.4.
2018-08-09 02:17:25 +02:00
Tobias Geerinckx-Rice 4c2ce29536
gnu: dovecot: Update to 2.3.2.1.
* gnu/packages/mail.scm (dovecot): Update to 2.3.2.1.
2018-08-09 02:17:25 +02:00
Tobias Geerinckx-Rice 83ee7ee735
gnu: xlockmore: Update to 5.56.
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.56.
2018-08-09 02:17:24 +02:00
Tobias Geerinckx-Rice 11c8a64912
gnu: autogen: Update to 5.18.14.
* gnu/packages/autogen.scm (autogen): Update to 5.18.14.
[inputs]: Move perl from native-inputs to here...
[native-inputs]: ...and which from inputs to here.
[arguments]: Remove unnecessary ‘/usr/bin/tr’ substitution.
2018-08-09 02:17:24 +02:00
Tobias Geerinckx-Rice 2a64c54a96
gnu: yoshimi: Update to 1.5.8.2.
* gnu/packages/music.scm (yoshimi): Update to 1.5.8.2.
2018-08-09 02:17:23 +02:00
Tobias Geerinckx-Rice 7cc72e3828
gnu: setbfree: Update to 0.8.7.
* gnu/packages/music.scm (setbfree): Update to 0.8.7.
2018-08-09 02:17:23 +02:00
Tobias Geerinckx-Rice e06748407f
gnu: setbfree: Don't use unstable tarball.
* gnu/packages/music.scm (setbfree)[source]: Use GIT-FETCH.
2018-08-09 02:17:22 +02:00
Tobias Geerinckx-Rice d841c813ae
gnu: libostree: Update to 2018.7.
* gnu/packages/package-management.scm (libostree): Update to 2018.7.
2018-08-09 02:17:22 +02:00
Tobias Geerinckx-Rice 57f962f3f0
gnu: youtube-dl: Update to 2018.08.04.
* gnu/packages/video.scm (youtube-dl): Update to 2018.08.04.
2018-08-09 02:17:21 +02:00
Tobias Geerinckx-Rice 729a9722ee
gnu: msitools: Update to 0.98.
* gnu/packages/package-management.scm (msitools): Update to 0.98.
2018-08-09 02:17:21 +02:00
Tobias Geerinckx-Rice 9ed69a078d
gnu: uwsgi: Update to 2.0.17.1.
* gnu/packages/web.scm (uwsgi): Update to 2.0.17.1.
2018-08-09 02:17:20 +02:00
Tobias Geerinckx-Rice c0efb1fe56
gnu: stunnel: Update to 5.48 [security fix].
No CVE. From the ChangeLog:

 “Security bugfixes: Fixed requesting client certificate when specified
  as a global option.”

* gnu/packages/web.scm (stunnel): Update to 5.48.
2018-08-09 02:16:36 +02:00
Ricardo Wurmus bc731eada6
gnu: python-flake8: Fix build.
* gnu/packages/python.scm (python-flake8)[arguments]: Add build phases
"delete-broken-test" and "fix-problem-with-pycodestyle".
[propagated-inputs]: Remove python-setuptools.
2018-08-08 23:10:26 +02:00
Ricardo Wurmus 5417c92877
gnu: python-flake8: Use INVOKE.
* gnu/packages/python.scm (python-flake8)[arguments]: Use INVOKE and always
return #T.
2018-08-08 23:10:19 +02:00
Leo Famulari e19f9c24aa
gnu: epiphany: Correctly set the library RUNPATH.
* gnu/packages/gnome.scm (epiphany): Set the runpath in #:configure-flags.
2018-08-08 16:35:18 -04:00
Ricardo Wurmus 2df4ecd61d
gnu: python-dbus: Update to 1.2.8.
* gnu/packages/python.scm (python-dbus): Update to 1.2.8.
[inputs]: Replace "python" with "python-wrapper".
2018-08-08 22:08:39 +02:00
Ricardo Wurmus cfe62fb22b
gnu: python-cython: Remove failing test.
* gnu/packages/python.scm (python-cython)[arguments]: Remove failing test.
2018-08-08 22:08:32 +02:00
Leo Famulari ccdc1690bd
gnu: Cython: Update to 0.28.4.
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
2018-08-08 22:08:24 +02:00
Ricardo Wurmus d3028f5b27
gnu: python-libxml2: Do not build static output.
This is a follow-up to commit 5f8642ea6a.

* gnu/packages/xml.scm (python-libxml2)[outputs]: Don't inherit from libxml2.
2018-08-08 22:07:51 +02:00
Oleg Pykhalov 4976ebddf1
gnu: restic: Fix tests.
* gnu/packages/backup.scm (restic)[arguments]: Replace 'check' phase.
2018-08-08 20:56:32 +03:00
Leo Famulari b5b610af5d
gnu: lxc: Fix CVE-2018-6556.
* gnu/packages/patches/lxc-CVE-2018-6556.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (lxc)[source]: Use it.
2018-08-08 11:51:54 -04:00
Leo Famulari 66d35d04e8
gnu: webkitgtk: Update to 2.20.4 [security fixes].
Fixes CVE-2018-{4246,4261,4262,4263,4264,4265,4266,4267,4270,4272,4273,4278,
4284,12911}.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.4.
2018-08-08 09:39:01 -04:00
Ricardo Wurmus 029c2ba0c5
gnu: btrfs-progs: Add zlib:static.
* gnu/packages/linux.scm (btrfs-progs)[inputs]: Add zlib:static.
2018-08-08 14:28:30 +02:00
Ricardo Wurmus 4e8d9015e0
gnu: e2fsprogs: Update to 1.44.3.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3.
* gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-08 14:28:24 +02:00
Ricardo Wurmus d60869805e
gnu: cups-filters: Update to 1.20.4.
* gnu/packages/cups.scm (cups-filters): Update to 1.20.4.
2018-08-08 13:10:20 +02:00
Oleg Pykhalov 277f25ce5a
gnu: Add ubridge.
* gnu/packages/networking.scm (ubridge): New variable.
2018-08-08 02:47:11 +03:00
Leo Famulari 6d777ff99c
gnu: FFmpeg: Support video stabilization with vidstab.
* gnu/packages/video.scm (ffmpeg)[inputs]: Add vidstab.
[arguments]: Configure with vidstab.
2018-08-07 16:51:57 -04:00
Leo Famulari 485638cd76
gnu: Add vidstab.
* gnu/packages/video.scm (vidstab): New variable.
2018-08-07 16:51:57 -04:00
Mark H Weaver 8000512669
gnu: linux-libre: Update to 4.17.13.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.13.
(%linux-libre-hash): Update hash.
2018-08-07 14:39:53 -04:00
Mark H Weaver 4976677b77
gnu: linux-libre@4.14: Update to 4.14.61.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.61.
(%linux-libre-4.14-hash): Update hash.
2018-08-07 14:39:51 -04:00
Mark H Weaver 8dfb63f8de
gnu: linux-libre@4.9: Update to 4.9.118.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.118.
2018-08-07 14:39:49 -04:00
Mark H Weaver b7d147c12b
gnu: linux-libre@4.4: Update to 4.4.146.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.146.
2018-08-07 14:39:46 -04:00
Leo Famulari 2246d564c8
gnu: Remove go-github-com-edsrzf-mmap-go.
* gnu/packages/syncthing.scm (go-github-com-edsrzf-mmap-go): Remove variable.
2018-08-07 13:35:14 -04:00
Danny Milosavljevic f5704c72a5
gnu: mrustc: Update to 0.8-1.ec907f5.
* gnu/packages/rust.scm (mrustc): Update to 0.8-1.ec907f5.
[arguments]<#:phases>[patch-date]: New phase.
2018-08-07 19:23:48 +02:00
Efraim Flashner 62694caa44
gnu: mariadb: Remove test which fails on armhf-linux.
* gnu/packages/databases.scm (mariadb)[arguments]: Disable test
'mroonga/storage.index_read_multiple_double'.
2018-08-07 19:55:33 +03:00
Marius Bakke 71179b35b8
gnu: mariadb: Further increase test timeouts.
* gnu/packages/databases.scm (mariadb)[arguments]: Allow 40 minutes for single
tests, and 600 in total.
2018-08-07 13:41:08 +02:00
Rutger Helling cc48997de5
gnu: vulkan-headers: Update to 1.1.82.0.
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.82.0.
* gnu/packages/vulkan.scm (vulkan-loader): Update to 1.1.82.0.
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.82.0.
2018-08-07 09:48:29 +02:00
Marius Bakke 3418e43bf5
gnu: mariadb: Adjust to test failures on Hydra.
* gnu/packages/patches/mariadb-client-test-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
[arguments]: Increase retry count and test timeout.  Disable test
main.myisampack.
2018-08-07 00:51:48 +02:00
Marius Bakke 6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Nicolas Goaziou e921234d02
gnu: wireshark: Update to 2.6.2.
* gnu/packages/networking.scm (wireshark): Update to 2.6.2.
2018-08-06 15:53:30 +02:00
Nicolas Goaziou 8418006db2
gnu: musescore: Update to 2.3.2.
* gnu/packages/music.scm (musescore): Update to 2.3.2.
2018-08-06 15:35:37 +02:00
Nils Gillmann 8db83f0259
gnu: gnurl: Update to 7.61.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.61.0.
2018-08-06 15:12:15 +03:00
Nicolas Goaziou c051767f4c
gnu: asymptote: Update to 2.47.
* gnu/packages/plotutils.scm (asymptote): Update to 2.47.
2018-08-06 14:07:08 +02:00
Nils Gillmann 46add5615a
gnu: neomutt: Update to 20180716 [fixes CVE-2018-{14349..14363}].
* gnu/packages/mail.scm (neomutt): Update to 20180716.
2018-08-06 12:50:13 +03:00
Kei Kebreau 340ee00bbf
gnu: Add povray.
* gnu/packages/graphics.scm (povray): New variable.
2018-08-05 00:20:25 -04:00
Christopher Baines e61f092c87
gnu: Patch duplicity with --ignore-mdc-error.
Modify the package to patch gnu.py with an unreleased upstream change to fix
duplicity working with recent releases of GnuPG. This change make the package
build again.

* gnu/packages/backup.scm (duplicity)[arguments]: Patch gnu.py within the
patch-source phase.
2018-08-04 08:45:57 +01:00
Mark H Weaver a058b5cfee
gnu: linux-libre: Update to 4.17.12.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.12.
(%linux-libre-hash): Update hash.
2018-08-03 22:48:13 -04:00
Mark H Weaver dd53b43af1
gnu: linux-libre@4.14: Update to 4.14.60.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.60.
(%linux-libre-4.14-hash): Update hash.
2018-08-03 22:47:00 -04:00
Mark H Weaver ca062f667e
gnu: linux-libre@4.9: Update to 4.9.117.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.117.
2018-08-03 22:46:13 -04:00
Ricardo Wurmus 0fb0db0022
gnu: python-scipy: Only run default tests.
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test
suite.  The full test suite is too expensive and brittle.
2018-08-03 15:24:40 +02:00
Ricardo Wurmus 78933bffb7
gnu: pigx-scrnaseq: Update to 0.0.7.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.7.
[inputs]: Add samtools.
2018-08-03 15:24:40 +02:00
Arun Isaac fa0a6d93d8
gnu: emacs-exwm: Fix fullscreen issue.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-exwm)[sources]: Add
emacs-exwm-fix-fullscreen-issue.patch to patches.
2018-08-03 18:21:19 +05:30
Jelle Licht ae7c1c3704
gnu: Add imapfilter.
* gnu/packages/mail.scm (imapfilter): New variable.
2018-08-03 03:15:26 +02:00
Danny Milosavljevic 5803f87284
gnu: Update ruby-net-ssh to 4.2.0.
* gnu/packages/ruby.scm (ruby-net-ssh)[version]: Update to 4.2.0.
[source]: Update hash.
2018-08-02 15:22:34 +02:00
Danny Milosavljevic 1f10e28d86
gnu: Add ruby-childprocess@0.6.3.
* gnu/packages/ruby.scm (ruby-childprocess): Modify.
(ruby-childprocess-0.6): New variable.
2018-08-02 15:22:27 +02:00
Efraim Flashner 165dc8bd60
gnu: minetest: Add console support.
* gnu/packages/games.scm (minetest)[inputs]: Add ncurses.
2018-08-02 15:31:44 +03:00
Efraim Flashner 35d5fa7696
gnu: games.scm: Arrange modules alphabetically.
* gnu/packages/games.scm: Arrange imported modules alphabetically.
2018-08-02 12:19:43 +03:00
Efraim Flashner 7fc90282aa
gnu: minetest: Use more system libraries.
* gnu/packages/games.scm (minetest)[source]: Remove bundled libraries in
a snippet.
[arguments]: Add flag to use system jsoncpp.
[inputs]: Add gmp, jsoncpp. Arrange alphabetically.
2018-08-02 12:19:42 +03:00
Efraim Flashner 7b8a753672
gnu: irrlicht: Don't use bundled libraries.
* gnu/packages/patches/irrlicht-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (irrlicht)[source]: Add patch. Remove bundled
code and binaries in a snippet.
[native-inputs]: Remove unzip.
[inputs]: Remove glu, add bzip2, libjpeg, libpng, libx11, libxx86vm.
[arguments]: Remove custom 'unpack phase, add custom 'chdir-to-source
phase and adjust 'fix-build-env phase to changes.
2018-08-02 12:19:42 +03:00
Efraim Flashner e8d8b485d0
gnu: minetest: Don't use unstable tarball.
* gnu/packages/games.scm (minetest)[source]: Download from git
repository.
2018-08-02 12:19:41 +03:00
Efraim Flashner 7217d33755
gnu: minetest-data: Don't use autogenerated tarball.
* gnu/packages/games.scm (minetest-data)[source]: Download from git
repository.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust custom build accordingly.
2018-08-02 12:19:37 +03:00
Ricardo Wurmus a8253fbe5f
gnu: Add net-snmp.
* gnu/packages/networking.scm (net-snmp): New variable.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
Co-authored-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-08-01 20:31:42 +02:00
Oleg Pykhalov c54511fde0
gnu: Add cdrkit-libre.
* gnu/packages/cdrom.scm (cdrkit-libre): New variable.
2018-08-01 19:30:41 +03:00
Marius Bakke 4214066d45
Merge branch 'master' into core-updates 2018-08-01 15:53:17 +02:00
Marius Bakke ae66fdaf9f
gnu: Add glibc@2.28.
* gnu/packages/base.scm (glibc-2.28): New public variable.
2018-08-01 15:48:26 +02:00
Marius Bakke 07ca7165f9
gnu: poppler: Update to 0.67.0.
* gnu/packages/pdf.scm (poppler): Update to 0.67.0.
2018-08-01 15:02:36 +02:00
Marius Bakke 2207053542
gnu: dmraid: Disable parallel build.
Fixes a race condition as reported by Brendan Tildesley
<brendan.tildesley@openmailbox.org> in <https://bugs.gnu.org/31999#187>.

* gnu/packages/disk.scm (dmraid)[arguments]: Set #:parallel-build #f.
2018-08-01 13:32:11 +02:00
Marius Bakke ad430c7127
gnu: xdotool: Update to 3.20160805.1.
* gnu/packages/xdisorg.scm (xdotool): Update to 3.20160805.1.
[source](patches): Remove.
[arguments]: Create output directory.
* gnu/packages/patches/xdotool-fix-makefile.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-01 13:32:11 +02:00
Marius Bakke 0027e09415
gnu: re2: Update to 2018-08-01.
* gnu/packages/regex.scm (re2): Update to 2018-08-01.
2018-08-01 13:32:11 +02:00
Marius Bakke 14cf45b2a5
gnu: elfutils: Update to 0.173.
* gnu/packages/elf.scm (elfutils): Update to 0.173.
2018-08-01 13:32:11 +02:00
Marius Bakke 3a29a3f316
gnu: freedesktop.scm: Remove unneeded imports.
* gnu/packages/freedesktop.scm: Remove unused imports.
2018-08-01 13:32:11 +02:00
Marius Bakke d7a503fcc6
gnu: upower: Add explicit dependency on Glib.
* gnu/packages/gnome.scm (upower)[propagated-inputs]: New field.
2018-08-01 13:32:11 +02:00
Marius Bakke 9ec5496525
gnu: upower: Update to 0.99.8.
* gnu/packages/gnome.scm (upower): Update to 0.99.8.
[source](uri): Change to new download location*.
[arguments]: Remove #:phases.

* https://lists.freedesktop.org/archives/devkit-devel/2018-June/001829.html
2018-08-01 13:32:10 +02:00
Marius Bakke bf5e7c8232
gnu: xapian: Update to 1.4.7.
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.7.
2018-08-01 13:32:10 +02:00
Marius Bakke e076d9392d
gnu: pango: Update to 1.42.3.
* gnu/packages/gtk.scm (pango): Update to 1.42.3.
2018-08-01 13:06:14 +02:00
Pierre Neidhardt 9805ee0a27
gnu: Add emacs-magit-todos.
* gnu/packages/emacs.scm (emacs-magit-todos): New variable.
2018-08-01 12:59:37 +02:00
Pierre Neidhardt d5af41cd01
gnu: Add emacs-pcre2el.
* gnu/packages/emacs.scm (emacs-pcre2el): New variable.
2018-08-01 12:59:27 +02:00
Efraim Flashner ec38e8dad0
gnu: libreoffice: Update to 6.0.6.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.6.2.
2018-08-01 11:19:28 +03:00
Marius Bakke 0d206dd054
gnu: lvm2: Fix static linking of dmeventd.
Fixes a regression introduced in a3ed69b694
where dmeventd.static fails to link against libm and breaks "lvm2-static".

* gnu/packages/patches/lvm2-static-link.patch: Patch make.tmpl.in.
2018-07-31 22:18:51 +02:00
Efraim Flashner 64ed4b6a27
gnu: optipng: Use system libraries.
* gnu/packages/image.scm (optipng)[source]: Add snippet to delete
bundled libraries.
[inputs]: Add libpng.
[arguments]: Add configure-flag to use system libraries.
2018-07-31 23:12:50 +03:00
Efraim Flashner 52404022cf
gnu: python-pyqt: Add qtwebkit.
* gnu/packages/qt.scm (python-pyqt)[inputs]: Add qtwebkit.
2018-07-31 17:46:01 +03:00
Andreas Enge 601cb1be2b
gnu: qtwebkit: Update to 5.212.0-alpha2.
* gnu/packages/patches/qtwebkit-pbutils-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/qt.scm (qtwebkit): Update to 5.212.0-alpha2.
[source]: Use new upstream location. Add patch.
[build-system]: Switch to cmake-build-system.
[inputs]: Add glib, gst-plugins-base, qtlocation, qtsensors,
qtwebchannel.
[arguments]: Disable the tests. Add new configure flags. Remove all
custom phases.
2018-07-31 17:45:58 +03:00
Pierre Neidhardt 92eb7aff41
gnu: Update udisks to 2.7.7.
* gnu/package/freedesktop.scm (udisks): Update to 2.7.7.
[inputs]: Replace parted with libblockdev.
2018-07-30 21:51:44 +02:00
Pierre Neidhardt fac91b39f5
gnu: Add libblockdev.
* gnu/package/disk.scm (libblockdev): New variable.
2018-07-30 21:51:44 +02:00
Pierre Neidhardt 82aac7c1f2
gnu: Add dmraid.
* gnu/package/disk.scm (dmraid): New variable.
2018-07-30 21:51:44 +02:00
Pierre Neidhardt a3ed69b694
gnu: lvm2: Add device-mapper-event support.
* GNU/packages/linux.scm (lvm2)[configure-flags]: Build device-mapper-event.
2018-07-30 21:51:43 +02:00
Pierre Neidhardt c229fb3d88
gnu: Add libbytesize.
* gnu/package/c.scm (libbytesize): New variable.
2018-07-30 21:51:43 +02:00
Pierre Neidhardt f7a4f7c041
gnu: Add ndctl.
* gnu/package/disk.scm (ndctl): New variable.
2018-07-30 21:51:43 +02:00
Pierre Neidhardt dedc0d0b7e
gnu: Add volume-key.
* gnu/package/disk.scm (volume-key): New variable.
2018-07-30 21:51:43 +02:00
Kei Kebreau e4a744da9f
gnu: minetest: Update to 0.4.17.1.
* gnu/packages/games.scm (minetest): Update to 0.4.17.1.
2018-07-30 13:16:31 -04:00
Kei Kebreau fbc3b802b7
gnu: retux: Return #t from all phases.
* gnu/packages/games.scm (retux)[arguments]: Return #t from the 'install' phase.
2018-07-30 12:56:41 -04:00
Kei Kebreau 0856e3e900
gnu: gnubg: Update to 1.06.001.
* gnu/packages/games.scm (gnubg): Update to 1.06.001.
2018-07-30 12:33:42 -04:00
Kei Kebreau 715a44e930
gnu: golly: Update to 3.2.
* gnu/packages/games.scm (golly): Update to 3.2.
2018-07-30 12:27:54 -04:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Marius Bakke b90289dadc
gnu: zlib: Move static library to separate output.
* gnu/packages/compression.scm (zlib)[outputs]: New field.
[arguments]: Add phase 'move-static-library'.
2018-07-30 17:09:07 +02:00
Marius Bakke 7b84410046
gnu: curl: Don't build static library.
* gnu/packages/curl.scm (curl)[arguments]: Add "--disable-static" to
  #:configure-flags.
2018-07-30 17:00:07 +02:00
Marius Bakke a44426ee01
gnu: shishi: Don't build static library.
* gnu/packages/kerberos.scm (shishi)[arguments]: Add "--disable-static" to
  #:configure-flags.
2018-07-30 16:59:33 +02:00
Marius Bakke 85b4482308
gnu: libidn: Don't build static libraries.
* gnu/packages/libidn.scm (libidn)[arguments]: New field.
2018-07-30 16:58:56 +02:00
Marius Bakke 1f2d64e4a8
gnu: libunistring: Don't install static library.
* gnu/packages/libunistring.scm (libunistring)[arguments]: Add #:configure-flags.
2018-07-30 16:42:59 +02:00
Marius Bakke cd9ad095c7
gnu: libidn2: Don't build static library.
* gnu/packages/libidn.scm (libidn2)[arguments]: New field.
2018-07-30 16:35:35 +02:00
Marius Bakke d9f8461250
gnu: libtasn1: Don't build static library.
* gnu/packages/tls.scm (libtasn1)[arguments]: New field.
2018-07-30 16:33:50 +02:00
Kei Kebreau f475b90c35
gnu: warzone2100: Update to 3.2.3.
* gnu/packages/games.scm (warzone2100): Update to 3.2.3.
[arguments]: Add "--with-distributor=Guix" to #:configure-flags.  Remove
'remove-reference-to-missing-file' and 'patch-for-qt5.8' phases.  Add
'fix-ivis-linktest' phase.
[native-inputs]: Add gettext-minimal.
[inputs]: Add harfbuzz and remove quesoglc.
2018-07-30 10:33:11 -04:00
Marius Bakke b4052c96ee
gnu: nettle: Move static libraries to separate output.
* gnu/packages/nettle.scm (nettle-2)[outputs]: Add "static".
[arguments]: Add #:phases.
2018-07-30 16:22:04 +02:00
Marius Bakke f419abea22
gnu: openblas: Update to 0.3.2.
* gnu/packages/maths.scm (openblas): Update to 0.3.2.
2018-07-30 15:32:10 +02:00
Efraim Flashner de596e9954
gnu: parallel: Update to 20180722.
* gnu/packages/parallel.scm (parallel): Update to 20180722.
2018-07-30 14:58:28 +03:00
Efraim Flashner 1121a5c67a
gnu: openssh: Update home-page.
* gnu/packages/ssh.scm (openssh)[home-page]: Update to new home-page.
2018-07-30 14:41:14 +03:00
Efraim Flashner 5416e40f1a
gnu: tig: Update to 2.4.1.
* gnu/packages/version-control.scm (tig): Update to 2.4.1.
[description]: Fix texinfo markup.
2018-07-30 14:38:17 +03:00
Efraim Flashner 6915d20f05
gnu: monero-gui: Build with modular qt.
* gnu/packages/finance.scm (monero-gui)[inputs]: Remove qt, add qtbase,
qtdeclarative, qtgraphicaleffects, qtquickcontrols.
[native-inputs]: Add qttools.
[arguments]: Add a custom phase to patch the absolute file-name of
lrelease and lupdate. Add a custom phase to wrap the executable with QT
environmental variables.
2018-07-30 09:50:37 +03:00
Arun Isaac 0c85d2c62d
gnu: youtube-dl: Update to 2018.07.29.
* gnu/packages/video.scm (youtube-dl): Update to 2018.07.29.
2018-07-30 10:52:08 +05:30
Clément Lassieur 78022159a7
gnu: cuirass: Update to 99241ef.
* gnu/packages/ci.scm (cuirass): Update to 99241ef.
2018-07-30 00:46:26 +02:00
Alex ter Weele 1237653aa5
gnu: Add emacs-agda2-mode
* gnu/packages/agda.scm (emacs-agda2-mode): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-29 23:33:40 +02:00
Alex ter Weele 253340dcc8
gnu: agda: Compile .agda files.
* gnu/packages/agda.scm: (agda)[arguments]: Compile .agda files.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-29 23:32:01 +02:00
Marius Bakke 1743172cdb
gnu: libreoffice: Fix build with newer GLM.
* gnu/packages/patches/libreoffice-glm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
2018-07-29 21:31:55 +02:00
Marius Bakke 4266df5cf8
gnu: libwps: Update to 0.4.9.
* gnu/packages/libreoffice.scm (libwps): Update to 0.4.9.
2018-07-29 20:37:59 +02:00
Efraim Flashner 3729767418
gnu: make-u-boot-package: Add missing module.
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Add
missing 'srfi srfi-1' module.
2018-07-29 20:49:42 +03:00
Efraim Flashner 76e206e644
gnu: Add fdroidserver.
* gnu/packages/android.scm (fdroidserver): New variable.
2018-07-29 20:00:34 +03:00
Efraim Flashner b24da117e8
gnu: python-docker-py: Update to 1.10.6.
* gnu/packages/docker.scm (python-docker-py): Update to 1.10.6.
2018-07-29 20:00:33 +03:00
Efraim Flashner 5e95181b9d
gnu: Add python-vagrant.
* gnu/packages/virtualization.scm (python-vagrant): New variable.
2018-07-29 20:00:33 +03:00
Efraim Flashner b23b9667d9
gnu: virtualization.scm: Use license prefix.
* gnu/packages/virtualization.scm: Replace all 'license' values with a
'license:' prefix.
2018-07-29 20:00:33 +03:00
Efraim Flashner 2b1e80d2a9
gnu: Add python-androguard.
* gnu/packages/android.scm (python-androguard): New variable.
2018-07-29 20:00:33 +03:00
Efraim Flashner c3f9a6ce67
gnu: Add python-codecov.
* gnu/packages/check.scm (python-codecov): New variable.
2018-07-29 20:00:32 +03:00
Efraim Flashner 19110787ab
gnu: Add python-pyperclip.
* gnu/packages/xdisorg.scm (python-pyperclip): New variable.
2018-07-29 20:00:32 +03:00
Efraim Flashner 42531fd3a7
gnu: Add python-docker-pycreds.
* gnu/packages/docker.scm (python-docker-pycreds): New variable.
2018-07-29 20:00:32 +03:00
Efraim Flashner 2973989060
gnu: quaternion: Build with modular qt.
* gnu/packages/messaging.scm (quaternion)[inputs]: Remove qt, add
qtbase, qtdeclarative.
2018-07-29 20:00:32 +03:00
Efraim Flashner 9febf39582
gnu: libqmatrixclient: Build with modular qt.
* gnu/packages/messaging.scm (libqmatrixclient)[inputs]: Remove qt, add
qtbase.
2018-07-29 20:00:31 +03:00
Efraim Flashner 6f066db11f
gnu: quaternion: Don't use unstable tarball.
* gnu/packages/messaging.scm (quaternion)[source]: Download using git
reference and not autogenerated tarball.
2018-07-29 20:00:31 +03:00
Efraim Flashner c6b60d30ad
gnu: libqmatrixclient: Don't use unstable tarball.
* gnu/packages/messaging.scm (libqmatrixclient)[source]: Download using
git reference and not autogenerated tarball.
2018-07-29 20:00:31 +03:00
Efraim Flashner 398a96a286
gnu: monero-gui: Use git-file-name.
* gnu/packages/finance.scm (monero-gui)[source]: Rename the downloaded
source using 'git-file-name'.
2018-07-29 20:00:30 +03:00
Efraim Flashner 136ff9a247
gnu: monero: Use git-file-name.
* gnu/packages/finance.scm (monero)[source]: Rename the downloaded
source using 'git-file-name'.
2018-07-29 20:00:30 +03:00
Efraim Flashner 077d66ed42
gnu: mcrl2: Build with modular qt.
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
2018-07-29 20:00:30 +03:00
Christopher Baines 6465497fb9
gnu: Remove duplicated python-pafy.
It was first added in 02f8f804f0, then again in
2dd12924cf.

* gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
2018-07-29 17:57:53 +01:00
Christopher Baines 3b4b6667af
gnu: Remove duplicated perl-extutils-depends.
This was first added in 84e8b19fe1, and then
again in 017b014ce4.

* gnu/packages/perl.scm (perl-extutils-depends): Remove duplicated package
definition.
2018-07-29 17:57:53 +01:00
Christopher Baines f694b4ba9c
gnu: Remove duplicated ghc-time-locale-compat.
It was first added in 5e51bcf7b3, then again in
c56a30b3ba.

* gnu/packages/haskell.scm (ghc-time-locale-compat): Remove duplicated package
definition.
2018-07-29 17:57:52 +01:00
Christopher Baines 89b4882176
gnu: Remove duplicated ghc-th-lift-instances.
It was first added in a6d1c4e75a, then again in
ff7dd11f0a.

* gnu/packages/haskell.scm (ghc-th-lift-instances): Remove duplicated package
definition.
2018-07-29 17:57:52 +01:00
Christopher Baines cfa6cc4d9a
gnu: Remove duplicated r-psych package.
It was first added in cdc129dc53, then again in
db80dd4a1d.

* gnu/packages/cran.scm (r-psych): Remove duplicated package definition.
2018-07-29 17:57:52 +01:00
Christopher Baines d493d59a7f
gnu: Remove duplicated emacs-load-relative.
It was first added in fa1a17b786, and then again
in f8a88f223e.

* gnu/packages/emacs.scm (emacs-load-relative): Remove duplicated package
definition.
2018-07-29 17:57:52 +01:00
Christopher Baines 26b8cd1a5a
gnu: Remove duplicated emacs-csv-mode.
It was first added in 9faa46ee48, and then again
in 8bc8efc753.

* gnu/packages/emacs.scm (emacs-csv-mode): Remove duplicated package
definition.
2018-07-29 17:57:52 +01:00
Ben Woodcroft 3f8c82e6d3
gnu: taxtastic: Add missing propagated-inputs.
* gnu/packages/bioinformatics.scm (taxtastic)[propagated-inputs]: Add
python-psycopg2, python-fastalite, python-pyyaml, python-six, python-jinja2,
python-dendropy.
2018-07-29 22:53:10 +10:00
Ben Woodcroft 9e0c135c39
gnu: python-dendropy: Update to 4.4.0.
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
2018-07-29 22:53:10 +10:00
Ben Woodcroft 19601e895b
gnu: python2-psycopg2: Update to 2.7.5.
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
2018-07-29 22:53:10 +10:00
Ben Woodcroft 5d5a02dd4c
gnu: Add python-fastalite.
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New variables.
2018-07-29 21:58:00 +10:00
Christopher Lemmer Webber 10d5315361
gnu: Add chroma.
* gnu/packages/games.scm (chroma): New variable.
2018-07-29 09:37:20 +02:00
Mark H Weaver f8e2df9851
gnu: linux-libre: Update to 4.17.11.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11.
(%linux-libre-hash): Update hash.
2018-07-29 03:32:03 -04:00
Mark H Weaver c85a76cc00
gnu: linux-libre@4.14: Update to 4.14.59.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59.
(%linux-libre-4.14-hash): Update hash.
2018-07-29 03:31:10 -04:00
Mark H Weaver 8b30bc82dc
gnu: linux-libre@4.9: Update to 4.9.116.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
2018-07-29 03:30:32 -04:00
Mark H Weaver 4262a491ce
gnu: linux-libre@4.4: Update to 4.4.145.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
2018-07-29 03:29:42 -04:00
Gábor Boskovits 6219685922
gnu: clojure: Fix index generation.
* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove
offending directory entry making indexing fail.
2018-07-29 08:41:34 +02:00
Marius Bakke d37d975b74
gnu: python-pytest: Update to 3.6.4.
* gnu/packages/check.scm (python-pytest): Update to 3.6.4.
[native-inputs]: Remove PYTHON-INVOKE.
2018-07-28 23:39:00 +02:00
Marius Bakke 20b0aaf986
gnu: python-fonttools: Update license.
This is a follow-up to commit 4696368108.

* gnu/packages/python.scm (python-fonttools)[license]: Change to EXPAT (since 3.21).
2018-07-28 23:37:52 +02:00
Marius Bakke d0ab3c33b7
gnu: mesa: Update to 18.1.5.
* gnu/packages/gl.scm (mesa): Update to 18.1.5.
2018-07-28 21:35:07 +02:00
Marius Bakke 148df6052c
Revert "Revert "gnu: llvm: Update to 6.0.1.""
This reverts commit bb8221d41c.
2018-07-28 21:23:11 +02:00
Efraim Flashner a4b7a1cb4a
gnu: python-3.7: Update deleted tests.
* gnu/packages/python.scm (python-3.7)[source]: Update the list of files
to be deleted in the snippet.
2018-07-28 21:56:28 +03:00
Marius Bakke 0333582477
gnu: mariadb: Move GCC ICE patch to the usual location.
* gnu/packages/databases.scm (mariadb)[source](patches): New field.
[arguments]: Don't disable semisync plugin.
[inputs]: Remove 'mariadb-gcc-ice.patch'.
2018-07-28 18:37:37 +02:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 48d7ac175f
gnu: openlibm: Update to 0.6.0.
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
2018-07-28 18:12:13 +02:00
Marius Bakke 46bda5eb7a
gnu: glm: Update home page.
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
2018-07-28 17:56:59 +02:00
Marius Bakke 5ea4b5943d
gnu: glm: Update to 0.9.9.0.
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
2018-07-28 17:55:04 +02:00
Marius Bakke 71de61c353
gnu: libjpeg-turbo: Update license.
* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
2018-07-28 17:27:16 +02:00
Marius Bakke 6871121be0
gnu: libjpeg-turbo: Update to 2.0.0.
* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
2018-07-28 17:27:16 +02:00
Marius Bakke 0981ec1300
gnu: accountsservice: Update to 0.6.50.
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50.
[arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags.
[inputs]: Add ELOGIND.
2018-07-28 17:27:15 +02:00
Marius Bakke 35fa923d8b
gnu: dconf: Update to 0.28.0.
* gnu/packages/gnome.scm (dconf): Update to 0.28.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add VALA and GLIB:BIN.
2018-07-28 17:27:15 +02:00
Marius Bakke e20e6b4061
gnu: dconf: Update license.
* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
2018-07-28 17:27:15 +02:00
Marius Bakke 03676d6f35
gnu: dconf: Install GTK documentation.
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC.
[arguments]: Adjust #:configure-flags accordingly.
2018-07-28 17:27:15 +02:00
Marius Bakke bc036f4c99
gnu: dconf: Adjust inputs and remove obsolete workaround.
* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2.
[propagated-inputs]: Add GLIB.
[native-inputs]: Add LIBXML2.  Remove INTLTOOL.
[arguments]: Remove #:phases.
2018-07-28 17:27:15 +02:00
Marius Bakke 4696368108
gnu: python-fonttools: Update to 3.28.0.
* gnu/packages/python.scm (python-fonttools): Update to 3.28.0.
[arguments]: Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
2018-07-28 15:52:30 +02:00
Marius Bakke fc8778e293
gnu: gdb: Fix build with Python >= 3.7.
* gnu/packages/patches/gdb-python-3.7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gdb.scm (gdb)[source](patches): New field.
2018-07-28 15:52:30 +02:00
Marius Bakke 25ccb99347
gnu: python-pytest-mock: Update to 1.10.0.
* gnu/packages/check.scm (python-pytest-mock): Update to 1.10.1.
2018-07-28 15:52:30 +02:00
Marius Bakke a9ae30b78e
gnu: python-pytest: Update to 3.6.3.
* gnu/packages/check.scm (python-pytest): Update to 3.6.3.
[propagated-inputs]: Add PYTHON-ATOMICWRITES.
[native-inputs]: Add PYTHON-INVOKE.
2018-07-28 15:52:29 +02:00
Marius Bakke 1166b9c795
gnu: Add python-invoke.
* gnu/packages/python.scm (python-invoke, python2-invoke): New public variables.
2018-07-28 15:52:29 +02:00
Marius Bakke 9f585a528e
gnu: python-pytest-cov: Update to 2.5.1.
* gnu/packages/check.scm (python-pytest-cov): Update to 2.5.1.
2018-07-28 15:52:29 +02:00
Marius Bakke 85f1342f01
gnu: python-hypothesis: Update to 3.66.6.
* gnu/packages/check.scm (python-hypothesis): Update to 3.66.6.
2018-07-28 15:52:29 +02:00
Marius Bakke 153812ee0d
gnu: python-flake8: Update to 3.5.0.
* gnu/packages/python.scm (python-flake8): Update to 3.5.0.
2018-07-28 15:52:28 +02:00
Marius Bakke fb4c6115f5
gnu: python-pytest-runner: Update to 4.2.
* gnu/packages/check.scm (python-pytest-runner): Update to 4.2.
[arguments]: Remove.
2018-07-28 15:52:28 +02:00
Marius Bakke d0205dfd92
gnu: python-setuptools: Update to 40.0.0.
* gnu/packages/python.scm (python-setuptools): Update to 40.0.0.
[source](uri): Adjust to zipball archive.
2018-07-28 15:52:28 +02:00
Marius Bakke fdf5344a23
gnu: python-pycodestyle: Update to 2.4.0.
* gnu/packages/python.scm (python-pycodestyle): Update to 2.4.0.
2018-07-28 15:52:28 +02:00
Marius Bakke 9e7d6e818c
gnu: python-more-itertools: Update to 4.2.0.
* gnu/packages/python.scm (python-more-itertools): Update to 4.2.0.
2018-07-28 15:52:27 +02:00
Marius Bakke e8e7cd12c7
gnu: python-pyflakes: Update to 2.0.0.
* gnu/packages/python.scm (python-pyflakes): Update to 2.0.0.
2018-07-28 15:52:27 +02:00
Marius Bakke 3765c9c95b
gnu: python-py: Update home page.
* gnu/packages/python.scm (python-py)[home-page]: Change to repository URL.
2018-07-28 15:52:27 +02:00
Marius Bakke a0d77eba72
gnu: python-py: Update to 1.5.4.
* gnu/packages/python.scm (python-py): Update to 1.5.4.
2018-07-28 15:52:27 +02:00
Marius Bakke bc46a45ae7
gnu: python-py: Add missing dependency on setuptools-scm.
* gnu/packages/python.scm (python-py)[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
2018-07-28 15:52:26 +02:00
Marius Bakke a422e2478e
gnu: python: Build reproducibly.
\o/

* gnu/packages/python.scm (python-3.7)[arguments]: Set PYTHONHASHSEED before
rebuilding all bytecode.  Adjust regex so that lib2to3_ex.py gets compiled.
2018-07-28 15:52:26 +02:00
Marius Bakke 81d967075e
gnu: python: Rebuild bytecode after removing tests.
* gnu/packages/python.scm (python-3.7)[arguments]: Run 'rebuild-bytecode'
after 'remove-tests' to save CPU cycles.  Adjust exclude regex.
2018-07-28 15:52:26 +02:00
Marius Bakke a1454169e0
gnu: python: Update to 3.7.0.
* gnu/packages/python.scm (python-3.6): Rename to ...
(python-3.7): ... this.  Update to 3.7.0.
[arguments]: Remove phase 'patch-timestamp-for-pyc-files' and related code.
Add phases to unset SOURCE_DATE_EPOCH during the check phase.
(python-3): Is now PYTHON-3.7.
* guix/build/python-build-system.scm (enable-bytecode-determinism): Don't set
DETERMINISTIC_BUILD.
2018-07-28 15:52:26 +02:00
Marius Bakke d66146073d
gnu: python: Remove outdated comment and phases.
* gnu/packages/python.scm (python-2.7)[arguments]: Don't set SOURCE_DATE_EPOCH
or make libraries writable, since those are handled by gnu-build-system.
(python-3.6): Don't override :#tests?.
2018-07-28 15:52:25 +02:00
Marius Bakke 7ba79d5d76
gnu: libxml2: Add explicit dependency on XZ.
* gnu/packages/xml.scm (libxml2)[inputs]: New field.
2018-07-28 15:48:27 +02:00
Marius Bakke 5f8642ea6a
gnu: libxml2: Move static library to separate output.
* gnu/packages/xml.scm (libxml2)[outputs, arguments]: New fields.
2018-07-28 15:41:03 +02:00
Ludovic Courtès c95c9032b4
gnu: x265: Fix compilation on ARMv7.
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file.
* gnu/packages/video.scm (x265)[sources](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-07-28 15:08:07 +02:00
Ludovic Courtès 5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux.
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-28 15:08:07 +02:00
Marius Bakke fbd2b8da5d
gnu: icu4c: Don't keep a reference to coreutils.
* gnu/packages/icu4c.scm (icu4c)[arguments]: Add phase 'avoid-coreutils-reference'.
2018-07-28 15:02:38 +02:00
Marius Bakke b148506df7
gnu: openldap: Don't build static libraries.
* gnu/packages/openldap.scm (openldap)[arguments]: Add "--disable-static" to
  #:configure-flags.  Remove phase 'provide-libtool'.
2018-07-28 15:02:37 +02:00
Marius Bakke 3b6f8a45d7
gnu: libinput: Update to 1.11.3.
* gnu/packages/freedesktop.scm (libinput): Update to 1.11.3.
2018-07-28 14:54:18 +02:00
Marius Bakke cb8f7d6d2f
gnu: meson: Update to 0.47.1.
* gnu/packages/build-tools.scm (meson): Update to 0.47.1.
* gnu/packages/patches/meson-for-build-rpath.patch: Adjust to file rename and
indendation change.
2018-07-28 14:54:18 +02:00
Kei Kebreau b15a020dd5
gnu: allegro: Update to 5.2.4.0.
* gnu/packages/game-development.scm (allegro): Update to 5.2.4.0.
[source]: Update URL.
2018-07-27 14:30:49 -04:00
Ludovic Courtès 74a4fa5040
gnu: gcc@8: Update to 8.2.0.
* gnu/packages/gcc.scm (gcc-8): Update to 8.2.0.
2018-07-27 18:52:58 +02:00
Ludovic Courtès f00d66b12c
gnu: Add font-blackfoundry-inria.
* gnu/packages/fonts.scm (font-blackfoundry-inria): New file.
2018-07-27 18:00:06 +02:00
Ludovic Courtès 223779c4c5
gnu: emacs-flycheck: Don't rely on pkg-info.el for 'flycheck-version'.
* gnu/packages/emacs.scm (flycheck)[source]: Add 'modules' and
'snippet'.
2018-07-27 18:00:06 +02:00
Ricardo Wurmus 26fd7b24ec
gnu: pigx-scrnaseq: Disable another expensive test.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Disable multiqc
test.
2018-07-27 15:44:23 +02:00
Ricardo Wurmus ed2dfe3955
gnu: Add snakemake-4.
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
2018-07-27 15:30:38 +02:00
Ricardo Wurmus 269f100330
gnu: snakemake: Add missing dependencies.
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27 15:30:38 +02:00
Ricardo Wurmus 216a72a957
gnu: Add python-datrie.
* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27 15:30:38 +02:00
Marius Bakke beb8511c73
gnu: imagemagick: Update to 6.9.10-8.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
2018-07-27 14:43:43 +02:00
Marius Bakke 2fcbc572f9
gnu: mbedtls-apache: Update to 2.7.5.
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
2018-07-27 14:43:43 +02:00
Ricardo Wurmus b62715aa82
gnu: snakemake: Update to 5.2.0.
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-27 14:19:43 +02:00
Ricardo Wurmus 22305f859b
gnu: guile-sdl2: Update to 0.3.0.
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0.
[arguments]: Remove "patch-makefile" phase.
2018-07-27 14:19:33 +02:00
Ludovic Courtès 8bece84022
gnu: guile: Remove version 2.2.2.
* gnu/packages/guile.scm (guile-2.2.2): Remove.
* guix/self.scm (guile-for-build): Remove special case for "2.2.2".
(guix-derivation): Likewise.
* build-aux/build-self.scm (build): Likewise.
2018-07-27 11:28:15 +02:00
Ludovic Courtès 2abd76e8af
gnu: guile: Update to 2.2.4.
* gnu/packages/guile.scm (guile-2.2): Update to 2.2.4.
(guile-2.2.4): Remove.
* gnu/packages/package-management.scm (guix)[inputs]: Switch to
GUILE-2.2.
* guix/self.scm (guile-for-build): Likewise.
2018-07-27 11:22:12 +02:00
Kei Kebreau 9dafb64711
gnu: tiled: Update to 1.1.6.
* gnu/packages/game-development.scm (tiled): Update to 1.1.6.
[arguments]: Substitute invoke for system*.
2018-07-27 00:17:06 -04:00
Kei Kebreau 6e92fba4b0
gnu: python-xsge: Update to 2018.02.26.
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to
2018.02.26.
[arguments]: Substitute invoke for system*.
2018-07-26 23:35:45 -04:00
Kei Kebreau d36b98ad95
gnu: freeciv: Update to 2.6.0.
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
2018-07-26 14:43:10 -04:00
Brendan Tildesley e8ec2dda08
gnu: ecryptfs-utils: Patch more hardcoded paths.
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file
to be patched that was missing in the last fix. Ecryptfs will now find the
umount binary path as well as mount and others. Re-sort the list of files to be
substituted.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-26 13:19:57 -04:00
Ludovic Courtès ac46a1c8e4
Merge branch 'master' into core-updates 2018-07-26 18:15:13 +02:00
Marius Bakke 92526ade57
gnu: cabextract: Delete bundled libmspack.
* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
2018-07-26 17:30:18 +02:00
Marius Bakke e0a98e7bd5
gnu: cabextract: Update to 1.7.
* gnu/packages/compression.scm (cabextract): Update to 1.7.
2018-07-26 17:28:35 +02:00
Marius Bakke 4bda2274a5
gnu: fuse: Update source hash.
The fuse 2.9.8 tarball and signature was modified in place.  Both are signed
by the same key, at different dates, and the only differences are directory
timestamps and a ChangeLog update.

* gnu/packages/linux.scm (fuse)[source](sha256): Update.
2018-07-26 17:17:45 +02:00
Danny Milosavljevic a9446dde2b
gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin".
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases>
[install]: Don't install "sunxi-spl-with-ecc.bin".
2018-07-26 15:54:52 +02:00
Danny Milosavljevic d38755cb91
gnu: Add ruby-net-scp.
* gnu/packages/ruby.scm (ruby-net-scp): New variable.
2018-07-26 15:54:52 +02:00
Efraim Flashner 714b49f68d
gnu: translate-shell: Fix .el install directory.
* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Change the
install directory during the custom 'emacs-install phase to match with
other emacs .el packages.
2018-07-26 16:14:11 +03:00
Marius Bakke 963157f1cc
gnu: mariadb: Delete test files and static libraries.
* gnu/packages/databases.scm (mariadb)[arguments]: Adapt 'post-install' phase
  to purge static archives and test executables.
2018-07-26 14:38:03 +02:00
Marius Bakke 2001d2dac4
gnu: mariadb: Remove some bundled libraries.
* gnu/packages/databases.scm (mariadb)[source](snippet, modules): New fields.
[arguments]: Add explicit #:configure-flags for system libraries.  Add
'unbundle' phase.  Remove 'pre-configure' phase.
[inputs]: Add SNAPPY and XZ.
2018-07-26 14:38:03 +02:00
Marius Bakke 03aed90b86
gnu: mariadb: Update to 10.1.34.
* gnu/packages/databases.scm (mariadb): Update to 10.1.34.
2018-07-26 14:38:02 +02:00
Marius Bakke 3869f39e6d
gnu: mariadb: Run the full test suite.
* gnu/packages/databases.scm (mariadb)[arguments]: Override 'check' phase.
Add phase 'adjust-tests'.  Disable one more plugin.
[properties]: New field.
2018-07-26 14:38:02 +02:00
Marius Bakke 5b4d2e40f1
gnu: mariadb: Disable plugin that fails on armhf.
* gnu/packages/databases.scm (mariadb)[arguments]: Add 'disable-plugins' phase.
2018-07-26 14:38:02 +02:00
Marius Bakke 4c27ea06d4
gnu: mariadb: Install pkg-config file to a standard location.
* gnu/packages/databases.scm (mariadb)[#:configure-flags]: Set
INSTALL_SHAREDIR to "share".
2018-07-26 14:37:29 +02:00
Gábor Boskovits d60772dcdd
gnu: java-picard: Fix manifest.
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase
'edit-classpath-in-manifest for the new manifest generation code.
2018-07-26 12:46:50 +02:00
Efraim Flashner bca72b39c7
gnu: python-qsintilla: Fix building.
* gnu/packages/qt.scm (python-qscintilla)[arguments]: Extend custom
'configure phase to also patch the 'installed.txt' file.
2018-07-26 13:21:05 +03:00
Mark H Weaver 54e543b626
gnu: linux-libre: Update to 4.17.10.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.10.
(%linux-libre-hash): Update hash.
2018-07-26 04:45:33 -04:00
Mark H Weaver 54465c4dbc
gnu: linux-libre@4.14: Update to 4.14.58.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.58.
(%linux-libre-4.14-hash): Update hash.
2018-07-26 04:44:40 -04:00
Mark H Weaver 4bc1528aa5
gnu: linux-libre@4.9: Update to 4.9.115.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.115.
2018-07-26 04:44:00 -04:00
Mark H Weaver 064c3e78dd
gnu: linux-libre@4.4: Update to 4.4.144.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.144.
2018-07-26 04:43:13 -04:00
Marius Bakke aaa2a8bbf3
gnu: Remove dangling variable.
* gnu/packages/xml.scm (libxslt/fixed): Remove.
2018-07-25 20:44:40 +02:00
Marius Bakke 27b2f34cda
gnu: Update cabextract.org.uk home pages.
* gnu/packages/compression.scm (libmspack, cabextract)[home-page, source]: Use
HTTPS.
2018-07-25 20:44:40 +02:00
Marius Bakke 03c16bb59a
gnu: libmspack: Don't build static library.
* gnu/packages/compression.scm (libmspack)[arguments]: Add #:configure-flags.
2018-07-25 20:44:39 +02:00
Marius Bakke b8d7119bc2
gnu: libmspack: Update to 0.7.
* gnu/packages/compression.scm (libmspack): Update to 0.7.
2018-07-25 20:44:39 +02:00
Marius Bakke 9a1356f71a
gnu: hplip-minimal: Simplify expression.
* gnu/packages/cups.scm (hplip-minimal): Remove unnecessary quotes.
2018-07-25 20:44:39 +02:00
Marius Bakke 8f838591f8
gnu: libjpeg-turbo: Don't build static libraries.
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add "--disable-static" to
  #:configure-flags.
2018-07-25 20:44:39 +02:00
Marius Bakke a77de47ad2
gnu: libjpeg-turbo: Update home page.
* gnu/packages/image.scm (libjpeg-turbo)[home-page]: Use HTTPS.
2018-07-25 20:44:39 +02:00
Marius Bakke 8938b369d2
gnu: audit: Don't build static libraries.
* gnu/packages/admin.scm (audit)[arguments]: Add "--disable-static" to
  #:configure-flags.
2018-07-25 20:44:39 +02:00
Marius Bakke 00f81f83a1
gnu: audit: Update to 2.8.4.
* gnu/packages/admin.scm (audit): Update to 2.8.4.
[arguments]: Remove #:phases.
2018-07-25 20:44:38 +02:00
Efraim Flashner 95da608451
Merge remote-tracking branch 'origin/master' into qt-updates 2018-07-25 21:30:18 +03:00
Efraim Flashner 2a43df2270
gnu: qt: Disable parallel building.
* gnu/packages/qt.scm (qt)[arguments]: Disable parallel-build.
2018-07-25 20:27:55 +03:00
Efraim Flashner d13c1d3363
gnu: qt: Apply changes from qtbase.
* gnu/packages/qt.scm (qt)[arguments]: In custom 'configure phase, add
flags to specify custom destination directories. Use system pcre. Add
flags to support older versions of the linux kernel. Add custom
'patch-mkspecs phase to search in their new location. Add custom
'patch-paths phase to prevent dynamic loading of certain libraries.
[native-search-paths]: New field.
[license]: Update it.
2018-07-25 20:27:52 +03:00
Efraim Flashner f88c8624cc
Revert "gnu: quassel: Fix building with Qt 5.11."
This reverts commit 68ddfb2e8d.

This is no longer necessary after the update to Qt-5.11.1.
2018-07-25 15:18:27 +03:00
Oleg Pykhalov b19f3337ea
gnu: Add pscircle.
* gnu/packages/admin.scm (pscircle): New variable.
2018-07-25 14:54:22 +03:00
Efraim Flashner 8e1895964f
gnu: Add hplip-minimal.
* gnu/packages/cups.scm (hplip-minimal): New variable.
* gnu/packages/scanner.scm (sane-backends)[inputs]: Replace hplip with
hplip-minimal.
* doc/guix.texi (Printing Services): Change example code to use
hplip-minimal in place of hplip. Add note explaining when use hplip.
2018-07-25 11:52:59 +03:00
Leo Famulari 39a57afc42
gnu: syncthing: Update to 0.14.49.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.49.
[source]: Remove obsolete patch.
[inputs]: Remove go-github-com-kardianos-osext.
* gnu/packages/patches/syncthing-fix-crash.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-07-24 19:07:06 -04:00
Leo Famulari 869d9c69f3
gnu: go-github-com-syncthing-notify: Update to 0.0.0-1.cdf89c4.
* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-1.cdf89c4.
2018-07-24 19:07:06 -04:00
Leo Famulari 2ed97a22d3
gnu: go-github-com-thejerf-suture: Update to 2.0.3-0.3f1fb62.
* gnu/packages/syncthing.scm (go-github-com-thejerf-suture): Update to
2.0.3-0.3f1fb62.
2018-07-24 19:07:02 -04:00
Björn Höfling 49a8684d9f
gnu: java-tomcat: Strip timestamps
* gnu/package/web.scm (java-tomcat)[arguments]: Add phase 'strip timestamps.
Makes build deterministic.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:21 +02:00
Björn Höfling 8dae9c92b6
gnu: java-tomcat: Remove bundled jars.
* gnu/packages/web.scm (java-tomcat)[source]: Add snippet to remove bundled jars.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:17 +02:00
Björn Höfling 6a86d3576c
gnu: java-tomcat: Update to 8.5.32.
* gnu/packages/web.scm (java-tomcat): Update to 8.5.32.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:14 +02:00
Björn Höfling 4b472f6a06
gnu: java: Use java-javaee-servletapi instead of java-tomcat.
* gnu/packages/java.scm(java-eclipse-sisu-inject)[inputs]: Remove java-tomcat, add java-javaee-servletapi.
(logback-core)[inputs]: Likewise.
* gnu/packages/maven.scm (maven-wagon-provider-test)[inputs]: Likewise.
* gnu/packages/web.scm (java-eclipse-jetty-webapp)[inputs]: Likewise.
(java-eclipse-jetty-server)[inputs]: Likewise.
(java-eclipse-jetty-http)[inputs]: Likewise.
(java-eclipse-jetty-jmx)[inputs]: Likewise.
(java-eclipse-jetty-io)[inputs]: Likewise.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:12 +02:00
Björn Höfling 10d62a88bf
gnu: Add java-javaee-servletapi.
* gnu/packages/java.scm (java-javaee-servletapi): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:10 +02:00
Björn Höfling 10eddaca0e
gnu: java: Use java-classpathx-servletapi instead of java-tomcat where possible.
* gnu/package/java.scm (java-commons-jxpath)[inputs]: Remove java-tomcat, add java-classpathx-servletapi.
(java-guice-servlet)[inputs]: Likewise.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:08 +02:00
Björn Höfling b1ccd2a1ec
gnu: java-logback-core: Add file-name field.
* gnu/package/java.scm (java-logback-core)[source]: Add file-name field.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:27:05 +02:00
Björn Höfling 9936ffe77d
gnu: java-guice: Remove jars.
* gnu/packages/java.scm (java-guice)[source]: Add snippet to delete jar-files.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25 00:26:37 +02:00
Marius Bakke 718f791f4e
gnu: fuse: Update to 2.9.8 [fixes CVE-2018-10906].
* gnu/packages/linux.scm (fuse): Update to 2.9.8.
2018-07-24 23:17:26 +02:00
Danny Milosavljevic 999ffb26df
gnu: Add ruby-rspec-its.
* gnu/packages/ruby.scm (ruby-rspec-its): New variable.
2018-07-24 22:13:21 +02:00
Danny Milosavljevic 45498f51be
gnu: Add ruby-childprocess.
* gnu/packages/ruby.scm (ruby-childprocess): New variable.
2018-07-24 22:04:44 +02:00
Efraim Flashner 02062f42e6
Revert "gnu: sddm: Fix CMake build."
This reverts commit 8674abb1dd.

This is no longer necessary after the upgrade to Qt-5.11.1.
2018-07-24 22:38:25 +03:00
Marius Bakke 3b92441bc1
gnu: icu4c: Update to 62.1.
* gnu/packages/icu4c.scm (icu4c): Update to 62.1.
2018-07-24 20:53:18 +02:00
Marius Bakke 95bbab76cd
gnu: fribidi: Update to 1.0.5.
* gnu/packages/fribidi.scm (fribidi): Update to 1.0.5.
[arguments]: Remove.
2018-07-24 20:53:18 +02:00
Marius Bakke 52f1687dc7
gnu: docbook-xsl: Delete bundled jars.
* gnu/packages/docbook.scm (docbook-xsl)[source](modules, snippet): New fields.
2018-07-24 20:53:18 +02:00
Marius Bakke fa258af20c
gnu: libgpg-error: Update to 1.32.
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.32.
2018-07-24 20:52:22 +02:00
Marius Bakke dcf105da63
gnu: curl: Remove graft for 7.61.0.
* gnu/packages/curl.scm (curl): Update to 7.61.0.
[replacement]: Remove field.
(curl-7.61.0): Remove variable.
2018-07-24 20:46:41 +02:00
Marius Bakke 41e2e58a2a
gnu: libtiff: Incorporate grafted changes.
* gnu/packages/image.scm (libtiff)[replacement]: Remove field.
[source](patches): Add 'libtiff-CVE-2018-8905.patch' and
'libtiff-CVE-2018-10963.patch'.
(libtiff/fixed): Remove variable.
2018-07-24 20:44:40 +02:00
Marius Bakke 99cfdfb10c
gnu: ghostscript: Incorporate grafted changes.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: Remove field.
(source)[patches]: Add 'ghostscript-CVE-2018-10194.patch'.
(ghostscript/fixed): Remove variable.
2018-07-24 20:42:48 +02:00
Marius Bakke 5a0b3c3408
gnu: openssl: Incorporate grafted changes.
* gnu/packages/tls.scm (openssl)[replacement]: Remove field.
[source](patches): Add 'openssl-1.0.2-CVE-2018-0495.patch' and
'openssl-1.0.2-CVE-2018-0732.patch'.
(openssl/fixed): Remove variable.
2018-07-24 20:42:40 +02:00
Marius Bakke 706ae8e15c
Merge branch 'master' into core-updates 2018-07-24 19:56:35 +02:00
Mark H Weaver 20de675a2e
gnu: linux-libre: Update to 4.17.9.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.9.
(%linux-libre-hash): Update hash.
2018-07-24 09:59:35 -04:00
Mark H Weaver 7955bdbd17
gnu: linux-libre@4.14: Update to 4.14.57.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.57.
(%linux-libre-4.14-hash): Update hash.
2018-07-24 09:58:41 -04:00
Mark H Weaver b02ba32af5
gnu: linux-libre@4.9: Update to 4.9.114.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.114.
2018-07-24 09:57:48 -04:00
Mark H Weaver f7b447f84b
gnu: linux-libre@4.4: Update to 4.4.143.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.143.
2018-07-24 09:56:53 -04:00
Ludovic Courtès 0e11f5da4d
gnu: go-github-com-yookoala-realpath: Fix license.
* gnu/packages/golang.scm (go-github-com-yookoala-realpath)[license]:
Change to EXPAT.
2018-07-24 15:48:06 +02:00
Ludovic Courtès a14a2da5fe
gnu: lightdm: Take 'nologin' from the 'shadow' package.
Reported by brendarn on #guix.

* gnu/packages/display-managers.scm (lightdm)[inputs]: Use SHADOW
instead of UTIL-LINUX.
2018-07-24 15:48:06 +02:00
Ludovic Courtès 68f50cfdd3
gnu: xorg-server: Apply patch to fix screen rotation on KMS.
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=106715>.

* gnu/packages/patches/xorg-server-rotate-fb.patch: New file.
* gnu/packages/xorg.scm (xorg-server)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-07-24 15:48:06 +02:00
Rutger Helling e97454b62c
gnu: mpv: Update to 0.29.0.
* gnu/packages/video.scm (mpv): Update to 0.29.0.
2018-07-24 11:19:07 +02:00
Gábor Boskovits 9d2160171c
gnu: java-asm: Add missing propagated-input.
* gnu/packages/java.scm (java-asm)[propagated-inputs]: Add java-aqute-libg.
2018-07-24 07:11:48 +02:00
Gábor Boskovits 33aa65e0ee
gnu: icedtea: Make icedtea-8 the default jdk.
* gnu/packages/java.scm (icedtea): Point to icedtea-8.
2018-07-24 07:11:30 +02:00
Efraim Flashner 19f2a52644
gnu: python-asn1crypto: Update to 0.24.0.
* gnu/packages/python-crypto.scm (python-asn1crypto): Update to 0.24.0.
2018-07-23 22:03:36 +03:00
Efraim Flashner d3b7feb7b9
gnu: python-asn1crypto: Don't use unstable tarball.
* gnu/packages/python-crypto.scm (python-asn1crypto)[source]: Replace
autogenerated tarball with git checkout.
2018-07-23 22:03:33 +03:00
Leo Famulari 8fca43e2df
gnu: wesnoth: Update to 1.14.4 [fixes CVE-2018-1999023].
* gnu/packages/games.scm (wesnoth): Update to 1.14.4.
2018-07-23 14:30:12 -04:00
Julien Lepiller 3adacb49fc
gnu: xorg: Update home-pages.
* gnu/packages/xorg.scm (perl-x11-protocol-other, perl-x11-xcb)
(perl-x11-protocol)[home-page]: Update to redirected home-pages.
2018-07-23 19:34:44 +02:00
Kei Kebreau 2cdb257ee3
gnu: arb: Update to 2.14.0.
* gnu/packages/algebra.scm (arb): Update to 2.14.0.
[arguments]: Substitute invoke for system*.
[license]: Change to lgpl2.1+.
2018-07-23 11:26:46 -04:00
Ludovic Courtès fef7baba78
gnu: Add guile-pfds.
* gnu/packages/guile.scm (guile-pfds): New variable.
2018-07-23 12:25:31 +02:00
Ludovic Courtès 977d866681
gnu: Switch several packages to 'guile-build-system'.
* gnu/packages/guile.scm (guile-minikanren)[build-system]: Set to
GUILE-BUILD-SYSTEM.
[arguments]: Remove.
[inputs]: Rename to 'native-inputs'.
(guile-miniadapton): Likewise.
(guile-colorized): Likewise.
(guile-irregex): Likewise, but rewrite 'arguments' field with custom
phases.
(guile-gdbm-ffi): Likewise, and move patch to the 'origin' form.
(guile-simple-zmq): Likewise, and change 'propagated-inputs' to
'inputs'.
(jupyter-guile-kernel): Likewise.
2018-07-23 12:25:31 +02:00
Ludovic Courtès a2908f5aae
gnu: aspell: Allow filters to be found.
Reported by Pierre-Antoine Rouby.

* gnu/packages/aspell.scm (aspell)[arguments]: Add 'set-filter-path'
phase.
2018-07-23 12:25:31 +02:00
Rutger Helling a472c2902e
gnu: wine-staging: Update to 3.13.
* gnu/packages/wine.scm (wine-staging): Update to 3.13.
2018-07-23 11:13:36 +02:00
Rutger Helling adff3bb916
gnu: wine-staging-patchset-data: Update to 3.13.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.13.
2018-07-23 11:13:36 +02:00
Rutger Helling 7a426eef20
gnu: qtox: Update to 1.16.3.
* gnu/packages/messaging.scm (qtox): Update to 1.16.3.
[inputs]: Change ffmpeg-3.4 to ffmpeg.
2018-07-23 11:13:35 +02:00
Rutger Helling 9d076dd4a0
gnu: c-toxcore: Update to 0.2.4.
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.4.
2018-07-23 11:13:35 +02:00
Kei Kebreau 1bb962b4d7
gnu: hyperrogue: Update to 10.4j.
* gnu/packages/games.scm (hyperrogue): Update to 10.4j.
[arguments]: Modify 'configure' phase and substitute invoke for system*.
2018-07-22 20:52:01 -04:00
Pierre Neidhardt 9f2adb2f19
gnu: emacs-pulseaudio-control: Update to 20180627.
* gnu/packages/emacs.scm (emacs-pulseaudio-control): Update to 20180627.
2018-07-22 23:14:53 +02:00
Pierre Neidhardt 5703380b50
gnu: Add demlo.
* gnu/packages/music.scm (demlo): New variable.
2018-07-22 21:44:28 +02:00
Pierre Neidhardt 53182924eb
gnu: Add go-github-com-wtolson-go-taglib.
* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib): New variable.
2018-07-22 21:44:28 +02:00
Pierre Neidhardt 62879d2216
gnu: Add go-github-com-michiwend-gomusicbrainz.
* gnu/packages/golang.scm (go-github-com-michiwend-gomusicbrainz): New variable.
2018-07-22 21:44:27 +02:00
Pierre Neidhardt 9630ae345b
gnu: Add go-github-com-michiwend-golang-pretty.
* gnu/packages/golang.scm (go-github-com-michiwend-golang-pretty): New variable.
2018-07-22 21:43:38 +02:00
Pierre Neidhardt bc3138d265
gnu: Add go-github-com-kr-text.
* gnu/packages/golang.scm (go-github-com-kr-text): New variable.
2018-07-22 21:40:05 +02:00
Pierre Neidhardt c496281724
gnu: Add go-github-com-stevedonovan-luar.
* gnu/packages/golang.scm (go-github-com-stevedonovan-luar): New variable.
2018-07-22 21:39:22 +02:00
Pierre Neidhardt 54b83f0e89
gnu: Add go-gitlab-com-ambrevar-damerau.
* gnu/packages/golang.scm (go-gitlab-com-ambrevar-damerau): New variable.
2018-07-22 21:31:36 +02:00
Pierre Neidhardt b4d1440f9f
gnu: Add go-github-com-yookoala-realpath.
* gnu/packages/golang.scm (go-github-com-yookoala-realpath): New variable.
2018-07-22 21:29:34 +02:00
Pierre Neidhardt f25e3b39d9
gnu: Add go-gitlab-com-ambrevar-golua-unicode.
* gnu/packages/golang.scm (go-gitlab-com-ambrevar-golua-unicode): New variable.
2018-07-22 21:29:08 +02:00
Pierre Neidhardt e25ddef5bd
gnu: Add go-github-com-aarzilli-golua.
* gnu/packages/golang.scm (go-github-com-aarzilli-golua): New variable.
2018-07-22 21:27:30 +02:00
Pierre Neidhardt 32cb1af632
gnu: Add go-github-com-mgutz-ansi.
* gnu/packages/golang.scm (go-github-com-mgutz-ansi): New variable.
2018-07-22 21:26:20 +02:00
Pierre Neidhardt 7601b4e4fe
gnu: Add go-github-com-mattn-go-colorable.
* gnu/packages/golang.scm (go-github-com-mattn-go-colorable): New variable.
2018-07-22 21:24:59 +02:00
Pierre Neidhardt 3291be815b
gnu: Add go-github-com-mattn-go-isatty.
* gnu/packages/golang.scm (go-github-com-mattn-go-isatty): New variable.
2018-07-22 21:23:13 +02:00
Pierre Neidhardt e968542d29
gnu: Add emacs-dired-du.
* gnu/packages/emacs.scm (emacs-dired-du): New variable.
2018-07-22 20:49:47 +02:00
Pierre Neidhardt 5f005932bc
gnu: Add emacs-helm-org-contacts.
* gnu/packages/emacs.scm (emacs-helm-org-contacts): New variable.
2018-07-22 20:45:22 +02:00
Pierre Neidhardt a86866f4b5
gnu: Add emacs-ztree.
* gnu/packages/emacs.scm (emacs-ztree): New variable.
2018-07-22 20:35:12 +02:00
Pierre Neidhardt cb19df37f3
gnu: emacs-evil-collection: Update to 20180721.
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 20180721.
2018-07-22 20:24:35 +02:00
Pierre Neidhardt d7d0c98977
gnu: emacs-mu4e-conversation: Update to 20180722.
* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20180722.
2018-07-22 20:09:44 +02:00
Pierre Neidhardt 22c0bef67c
gnu: emacs-helm-exwm: Update to 20180703.
* gnu/packages/emacs.scm (emacs-helm-exwm): Update to 20180703.
2018-07-22 20:04:54 +02:00
Pierre Neidhardt 1ce4f55572
gnu: emacs-wgrep-helm: Deprecate in favor of emacs-wgrep.
* gnu/packages/emacs.scm (emacs-wgrep-helm): Deprecate.
2018-07-22 19:58:10 +02:00
Pierre Neidhardt 3ad4443f68
gnu: emacs-wgrep: Update to 20180711.
* gnu/packages/emacs.scm (emacs-wgrep): Update to 20180711.
2018-07-22 19:55:06 +02:00
Efraim Flashner 2338755afa
gnu: python-pyqt: Don't use private sip file.
* gnu/packages/qt.scm (python-sip)[arguments]: Don't use '--sip-module'
flag in custom 'configure phase.
(python-pyqt)[sources]: Add patch.
* gnu/packages/patches/pyqt-public-sip.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-07-22 20:43:01 +03:00
Efraim Flashner fac1447bf3
gnu: python-sip: Update to 4.19.12.
* gnu/packages/qt.scm (python-sip): Update to 4.19.12.
2018-07-22 20:42:55 +03:00
Efraim Flashner bba6069708
gnu: python-pyqt-4: Remove variable.
* gnu/packages/qt.scm (python-pyqt-4): Remove variable.
(python2-pyqt-4): Don't inherit from python-pyqt-4.
2018-07-22 20:42:48 +03:00
Efraim Flashner e1846928ee
gnu: python-poppler-qt4: Remove variable.
* gnu/packages/pdf.scm (python-poppler-qt4): Remove variable.
2018-07-22 20:42:42 +03:00
Pierre Neidhardt db4c03e249
gnu: emacs-helm-eww: Update to 20180511.
* gnu/packages/emacs.scm (emacs-helm-eww): Update to 20180511.
2018-07-22 19:41:59 +02:00
Pierre Neidhardt b9231c5c0c
gnu: emacs-exwm: Update to 0.19.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.19.
2018-07-22 19:30:45 +02:00
Pierre Neidhardt 812929a42c
gnu: emacs-xelb: Update to 0.15.
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.15.
2018-07-22 19:30:25 +02:00
Pierre Neidhardt 0cfc168b37
gnu: Add ccrypt.
* gnu/packages/crypto.scm (ccrypt): New variable.
2018-07-22 19:17:49 +02:00
Marius Bakke 4b7e861b59
gnu: gst-libav: Delete bundled ffmpeg.
* gnu/packages/gstreamer.scm (gst-libav)[source](modules, snippet): New fields.
[arguments]: Remove #:phases.
2018-07-22 18:23:43 +02:00
Marius Bakke 81cd8bf870
gnu: gstreamer: Update to 1.14.2.
* gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base, gst-plugins-good,
gst-plugins-bad, gst-plugins-ugly, gst-libav, python-gst): Update to 1.14.2.
2018-07-22 18:23:43 +02:00
Marius Bakke 57ba8d0673
gnu: double-conversion: Update to 3.0.0.
* gnu/packages/maths.scm (double-conversion): Update to 3.0.0.
2018-07-22 18:23:43 +02:00
Marius Bakke b343850ea3
gnu: double-conversion: Update home page.
* gnu/packages/maths.scm (double-conversion)[home-page]: Update to redirected.
2018-07-22 18:23:42 +02:00
Marius Bakke 19c269d3d4
gnu: libgsf: Update to 1.14.43. 2018-07-22 18:23:42 +02:00
Marius Bakke b74348077b
gnu: libpsl: Update to 0.20.2.
* gnu/packages/web.scm (libpsl): Update to 0.20.2.
2018-07-22 18:23:42 +02:00
Marius Bakke df3f99af76
gnu: xf86-video-r128: Update to 6.11.0.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.11.0.
[source]: Use URL-FETCH.
[arguments]: Remove.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
2018-07-22 18:14:34 +02:00
Marius Bakke 08b87ab0df
gnu: pcre: Update to 8.42.
* gnu/packages/pcre.scm (pcre): Update to 8.42.
2018-07-22 17:54:54 +02:00
Brendan Tildesley 4febfdd0f3
gnu: ffmpegthumbnailer: New variable.
* gnu/packages/video.scm (ffmpegthumbnailer): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-22 16:44:53 +02:00
Stefan Stefanović 706a6ff154
gnu: sddm: Update to 0.18.0.
* gnu/packages/display-managers.scm (sddm): Update to 0.18.0.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-22 16:25:59 +02:00
Marius Bakke 0c468cb52d
gnu: chemistry.scm: Add missing import.
This is a follow-up to commit eb5ece73a8.

* gnu/packages/chemistry.scm: Import (gnu packages).
2018-07-22 16:19:22 +02:00
Julien Lepiller a7d5ce94ba
gnu: Add u-boot-cubietruck.
* gnu/packages/bootloaders.scm (u-boot-cubietruck): New variable.
2018-07-22 09:52:15 +02:00
Kei Kebreau 8eb49ec527
gnu: minetest: Update to 0.4.17.
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.17.
2018-07-21 23:00:57 -04:00
Kei Kebreau eb5ece73a8
gnu: openbabel: Fix crash when opening NWChem output files.
* gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/chemistry.scm (openbabel)[source]: Use it.
2018-07-21 22:28:51 -04:00
Björn Höfling 889e7fab3c
gnu: youtube-dl: Update to 2018.07.10.
* gnu/packages/video.scm (youtube-dl): Update to 2018.07.10.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-21 14:12:12 -04:00
Andreas Enge e4351015ec
gnu: calibre: Update to 3.28.0.
* gnu/packages/ebook.scm (calibre): Update to 3.28.0.
2018-07-21 19:24:14 +02:00
Marius Bakke 0d517c073d
gnu: util-linux: Update to 2.32.1.
* gnu/packages/linux.scm (util-linux): Update to 2.32.1.
2018-07-21 02:45:56 +02:00
Marius Bakke 7da8ba2eae
gnu: pango: Update to 1.42.2.
* gnu/packages/gtk.scm (pango): Update to 1.42.2.
2018-07-21 02:45:56 +02:00
Marius Bakke c956653413
gnu: harfbuzz: Update to 1.8.4.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.8.4.
2018-07-21 02:45:56 +02:00
Marius Bakke f2ca4fa5c3
gnu: cmake: Update to 3.12.0.
* gnu/packages/cmake.scm (cmake): Update to 3.12.0.
2018-07-21 02:45:55 +02:00
Marius Bakke d64edd2c81
gnu: libuv: Drop redundant 'autogen' phase.
* gnu/packages/libevent.scm (libuv)[arguments]: Remove #:phases.
2018-07-21 02:45:55 +02:00
Marius Bakke 56cd03d686
gnu: libuv: Update to 1.22.0.
* gnu/packages/libevent.scm (libuv): Update to 1.22.0.
2018-07-21 02:45:55 +02:00
Marius Bakke 78a9a2501d
gnu: texinfo: Fix FTBFS with Perl 5.28.
* gnu/packages/patches/texinfo-perl-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/texinfo.scm (texinfo)[source](patches): New field.
2018-07-21 02:45:55 +02:00
Marius Bakke 463ad503b1
gnu: readline: Update to 7.0.5.
* gnu/packages/readline.scm (%patch-series-7.0): Add patch 4 and 5.
2018-07-21 02:13:45 +02:00
Marius Bakke f94a8654d6
gnu: perl: Update to 5.28.0.
* gnu/packages/patches/perl-deterministic-ordering.patch: Adjust path.
* gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch,
gnu/packages/patches/perl-file-path-CVE-2017-6512.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/perl.scm (perl): Update to 5.28.0.
[source](patches): Remove obsolete.
2018-07-21 02:12:33 +02:00
Brendan Tildesley 56e533929f
gnu: libgaiagraphics: Fix typo.
* gnu/packages/geo.scm: (libgaiagraphics)[inputs]: Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-20 15:34:57 -04:00
Leo Famulari 5dc53092c6
gnu: vdirsyncer: Update to 0.16.7.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.7.
2018-07-20 15:30:22 -04:00
Marius Bakke eb9c0d20f9
gnu: ffmpeg: Update to 4.0.2.
* gnu/packages/video.scm (ffmpeg): Update to 4.0.2.
2018-07-20 17:08:13 +02:00
Marius Bakke 0a08ea2a50
gnu: ffmpeg@3.4: Update to 3.4.4.
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.4.
2018-07-20 17:08:12 +02:00
Marius Bakke 134189e26f
gnu: feh: Update to 2.27.1.
* gnu/packages/image-viewers.scm (feh): Update to 2.27.1.
2018-07-20 17:08:12 +02:00
Andreas Enge a2662bfe9c
gnu: gp2c: Update to 0.0.11.
* gnu/packages/algebra.scm (gp2c): Update to 0.0.11.
2018-07-20 10:45:54 +02:00
Andreas Enge 03d5f73e96
gnu: pari-gp: Update to 2.11.0.
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.0.
2018-07-20 10:44:21 +02:00
Leo Famulari 5a3bf25526
gnu: borg: Update the list of Cython-generated files to delete.
Reported by: Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/backup.scm (borg)[source]: Update the snippet.
2018-07-19 18:28:29 -04:00