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33623 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 3255fc3bfe
gnu: xlsx2csv: Update to 0.7.4. 
* gnu/packages/xml.scm (xlsx2csv): Update to 0.7.4.
 2019-02-10 17:45:39 +01:00
Tobias Geerinckx-Rice 99631313e2
gnu: clojure-tools-macro: Don't use unstable tarball. 
* gnu/packages/clojure.scm (clojure-tools-macro)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-10 17:45:38 +01:00
Tobias Geerinckx-Rice 62dbf78b65
gnu: clojure-algo-monads: Don't use unstable tarball. 
* gnu/packages/clojure.scm (clojure-algo-monads)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-10 17:45:38 +01:00
Tobias Geerinckx-Rice 85e0827d90
gnu: clojure-algo-generic: Don't use unstable tarball. 
* gnu/packages/clojure.scm (clojure-algo-generic)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-10 17:45:38 +01:00
Tobias Geerinckx-Rice fba9a66095
gnu: xinetd: Don't use unstable tarball. 
* gnu/packages/web.scm (xinetd)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-10 17:45:38 +01:00
Mark H Weaver 1d5be0b61c
gnu: linux-libre@4.4: Update to 4.4.174. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.174.
 2019-02-09 23:01:12 -05:00
Nicolas Goaziou 2becddeb0c
gnu: emacs-pdf-tools: Update to 0.90. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90.
[source]: Remove patch.
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove reference to deleted file.
 2019-02-09 23:30:13 +01:00
Vagrant Cascadian 81d59f4425
gnu: electrum: Update to 3.3.3. 
* gnu/packages/finance.scm (electrum): Update to 3.3.3.
  [inputs]: Add python-aiohttp, python-aiohttp-socks, python-aiorpcx and
    python-certifi.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-09 23:27:12 +01:00
Vagrant Cascadian 93d3360ab0
gnu: Add python-aiorpcx. 
* gnu/packages/python-web.scm (python-aiorpcx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-09 23:27:12 +01:00
Vagrant Cascadian 20310a7e92
gnu: Add python-aiohttp-socks. 
* gnu/packages/python-web.scm (python-aiohttp-socks): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-09 23:27:12 +01:00
Rutger Helling 64b632f861
gnu: lookingglass: Build with spice-protocol@0.12.14. 
* gnu/packages/virtualization.scm (lookingglass)[inputs]: Use
spice-protocol@0.12.14 instead of spice-protocol.
 2019-02-09 22:23:14 +01:00
Rutger Helling 44ad1c16e2
gnu: Add spice-protocol@0.12.14. 
* gnu/packages/spice.scm (spice-protocol@0.12.14): New variable.
 2019-02-09 22:23:14 +01:00
Marius Bakke 0bba8a5cf8
gnu: inkscape: Fix FTBFS with GCC >= 6. 
* gnu/packages/inkscape.scm (inkscape)[arguments]: Add phase
'dont-use-system-includes.
 2019-02-09 21:53:42 +01:00
Marius Bakke b6c2805c0b
gnu: hyperrogue: Fix FTBFS with GCC7. 
* gnu/packages/games.scm (hyperrogue)[arguments]: Remove redundant
  #:make-flags.  Preserve original CPATH when adding SDL path.
 2019-02-09 21:53:42 +01:00
Marius Bakke 43d4c22981
gnu: libevdev: Fix FTBFS with GCC7. 
* gnu/packages/xorg.scm (libevdev)[arguments]: Add phase to please "gcc -pedantic".
 2019-02-09 21:53:42 +01:00
Marius Bakke 8771fc1715
gnu: aspell: Fix FTBFS with GCC7. 
* gnu/packages/patches/aspell-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/aspell.scm (aspell)[source](patches): Use it.
 2019-02-09 21:53:42 +01:00
Marius Bakke a555c3f438
gnu: swig: Fix FTBFS with GCC >= 6. 
* gnu/packages/swig.scm (swig)[arguments]: Add phase to remove -isystem flag
to GCC.
 2019-02-09 21:53:41 +01:00
Marius Bakke 7f81f8bccc
gnu: cppunit: Update to 1.14.0. 
* gnu/packages/check.scm (cppunit): Update to 1.14.0.
(cppunit-1.14): Remove variable.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Change CPPUNIT-1.14 to CPPUNIT.
 2019-02-09 21:53:41 +01:00
Marius Bakke 546bee4002
gnu: cmake: Try CPATH and C_INCLUDE_PATH when finding system libraries. 
* gnu/packages/cmake.scm (cmake)[arguments]: Try both CPATH and C_INCLUDE_PATH
instead of just the latter.
 2019-02-09 21:53:41 +01:00
Marius Bakke a1635de0ce
gnu: python: Fix FTBFS with GCC >= 6. 
* gnu/packages/patches/python-3-search-paths.patch: s/C_INCLUDE_PATH/CPATH.
* gnu/packages/patches/python-2.7-search-paths.patch: Ditto.
 2019-02-09 21:53:41 +01:00
Efraim Flashner 3670ea70e2
gnu: glibc-final-with-bootstrap-bash: Don't enable obsolete rpc. 
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
[arguments]: Remove 'enable-obsolete-rpc' configure flag.

This brings this glibc package in line with the other glibc packages
which are also built without the pre-2.14 glibc RPC functions. These
functions cause build failures on armhf-linux and aarch64-linux.
 2019-02-09 21:53:41 +01:00
Marius Bakke 01e8263feb
gnu: Use GCC 7 as the default compiler. 
* gnu/packages/cross-base.scm (%gcc-cross-include-paths): Remove
CROSS_C_INCLUDE_PATH & co in favor of CROSS_CPATH.
* gnu/build/cross-toolchain.scm (%gcc-cross-include-paths): Likewise.
(cross-gcc-build-phases): Set CROSS_C_INCLUDE_PATH and
CROSS_CPLUS_INCLUDE_PATH when building the cross GCC.
* gnu/packages/commencement.scm (libstdc++): Add
"--disable-libstdcxx-dual-abi" to #:configure-flags.
(gcc-boot0)[arguments]: Add "--disable-libmpx"
to #:configure-flags.
(gcc-final): Add phase to set C_INCLUDE_PATH and CPLUS_INCLUDE_PATH before
building GCC.
(gcc-toolchain-5): Use MAKE-GCC-TOOLCHAIN.
(gcc-toolchain-7): Change to GCC-TOOLCHAIN.
* gnu/packages/gcc.scm (gcc): Change from GCC-5 to GCC-7.
(gfortran): Change to GFORTRAN-7.
(gcc-objc): Change to GCC-OBJC-7.
(gcc-objc++): Change to GCC-OBJC++-7.
* gnu/packages/rust.scm (rust-1.19.0)[native-search-paths]: Change from
C_INCLUDE_PATH & co to CPATH.
 2019-02-09 21:53:41 +01:00
Marius Bakke de92ab21c1
gnu: python-dateutil: Update to 2.8.0. 
* gnu/packages/time.scm (python-dateutil): Update to 2.8.0.
[arguments]: New field.
[native-inputs]: Add PYTHON-PYTEST.
 2019-02-09 21:27:25 +01:00
Marius Bakke 9429590393
gnu: python-packaging: Update to 19.0. 
* gnu/packages/python-xyz.scm (python-packaging): Update to 19.0.
 2019-02-09 21:27:25 +01:00
Marius Bakke 59bd5a4a09
gnu: python-fonttools: Update to 3.37.3. 
* gnu/packages/python-xyz.scm (python-fonttools): Update to 3.37.3.
 2019-02-09 21:27:25 +01:00
Marius Bakke b2b96d5367
gnu: python-freezegun: Update to 0.3.11. 
* gnu/packages/check.scm (python-freezegun): Update to 0.3.11.
 2019-02-09 21:27:25 +01:00
Marius Bakke b3ca2b45d1
gnu: python-setuptools: Update to 40.8.0. 
* gnu/packages/python-xyz.scm (python-setuptools): Update to 40.8.0.
 2019-02-09 21:27:25 +01:00
Marius Bakke 16e03a521e
gnu: python-more-itertools: Update to 5.0.0. 
* gnu/packages/python-xyz.scm (python-more-itertools): Update to 5.0.0.
[arguments]: Remove.
 2019-02-09 21:27:25 +01:00
Marius Bakke 84127f8c30
gnu: python-configparser: Update to 3.7.1. 
* gnu/packages/python-xyz.scm (python-configparser): Update to 3.7.1.
[source](uri): Use PYPI-URI.
 2019-02-09 21:27:25 +01:00
Marius Bakke 54da6f9f9b
gnu: python2-pathlib2: Update to 2.3.3. 
* gnu/packages/python-xyz.scm (python2-pathlib2): Update to 2.3.3.
 2019-02-09 21:27:25 +01:00
Marius Bakke 81ed0980a5
gnu: python-pluggy: Update to 0.8.1. 
* gnu/packages/python-xyz.scm (python-pluggy): Update to 0.8.1.
 2019-02-09 21:27:24 +01:00
Marius Bakke 14f10479d0
gnu: python-atomicwrites: Update to 1.3.0. 
* gnu/packages/python-xyz.scm (python-atomicwrites): Update to 1.3.0.
 2019-02-09 21:27:24 +01:00
Marius Bakke 1bfb53c025
gnu: python-coverage: Update to 4.5.2. 
* gnu/packages/check.scm (python-coverage): Update to 4.5.2.
 2019-02-09 21:27:24 +01:00
Marius Bakke d16ef28b80
gnu: python-pycodestyle: Update to 2.5.0. 
* gnu/packages/patches/python-pycodestyle-stdlib-tokenize-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-pycodestyle): Update to 2.5.0.
[source](patches): Remove.
 2019-02-09 21:27:24 +01:00
Marius Bakke ac63cf0a69
gnu: Remove python-flake8@3.5. 
* gnu/packages/python-xyz.scm (python-flake8-3.5): Rename to ...
(python-flake8): ... this.  Update to 3.6.0.  Remove previous variant.
[arguments]: Remove phases 'delete-broken-test' and 'fix-problem-with-pycodestyle'.
[properties]: Adjust for renamed variable.
(python2-flake8-3.5): Rename to ...
(python2-flake8): ... this.  Remove previous variable.
* gnu/packages/check.scm (python-hypothesis)[native-inputs]: Adjust accordingly.
 2019-02-09 21:27:24 +01:00
Marius Bakke 5b972c3256
gnu: python-hypothesis: Update to 4.5.3. 
* gnu/packages/check.scm (python-hypothesis): Update to 4.5.3.
 2019-02-09 21:27:24 +01:00
Marius Bakke 850926439f
gnu: python-setuptools-scm: Update to 3.2.0. 
* gnu/packages/python-xyz.scm (python-setuptools-scm): Update to 3.2.0.
 2019-02-09 21:27:24 +01:00
Marius Bakke 8dd1fce66e
gnu: python-py: Update to 1.7.0. 
* gnu/packages/python-xyz.scm (python-py): Update to 1.7.0.
 2019-02-09 21:27:24 +01:00
Marius Bakke b5a72640d7
gnu: Tcl/Tk: Update to 8.6.9. 
* gnu/packages/tcl.scm (tcl): Update to 8.6.9.
(tk): Update to 8.6.9.1.
[source](uri): Use VERSION-PREFIX to take only the first three components.
 2019-02-09 21:27:23 +01:00
Marius Bakke 46d5a7e33d
gnu: sqlite: Enable FTS3 support. 
This is no longer enabled by default since 3.25.0.

* gnu/packages/sqlite.scm (sqlite)[arguments]: Add "-DSQLITE_ENABLE_FTS3"
to #:configure-flags.
 2019-02-09 21:27:23 +01:00
Marius Bakke f73f2e17d9
gnu: sqlite: Update to 3.27.1. 
* gnu/packages/sqlite.scm (sqlite): Update to 3.27.1.
 2019-02-09 21:27:23 +01:00
Marius Bakke ebbb7286b9
Merge branch 'master' into core-updates 2019-02-09 21:11:00 +01:00
Marius Bakke aefa29123f
gnu: python-pytest: Update home page. 
* gnu/packages/check.scm (python-pytest)[home-page]: Follow redirects to
https://docs.pytest.org/en/latest/.
 2019-02-09 21:07:37 +01:00
Marius Bakke 809f003f15
gnu: python-configparser: Update home page. 
* gnu/packages/python-xyz.scm (python-configparser)[home-page]: Set to source
repository.
 2019-02-09 21:07:37 +01:00
Marius Bakke 2c7a28ecce
gnu: notmuch: Update to 0.28.1. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.1.
 2019-02-09 20:58:16 +01:00
Marius Bakke 44ed628466
gnu: tracker: Build against the regular SQLite. 
FTS5 is enabled by default in the current version.

* gnu/packages/sqlite.scm (sqlite-with-fts5): Remove variable.
* gnu/packages/gnome.scm (tracker)[inputs]: Change from that to SQLITE.
 2019-02-09 20:58:16 +01:00
Marius Bakke 9d51a97809
gnu: webkitgtk: Update to 2.22.6. 
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.6.
 2019-02-09 20:58:15 +01:00
Marius Bakke 037d591367
gnu: libvpx: Update to 1.8.0. 
* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/video.scm (libvpx): Update to 1.8.0.
[source](patches): Remove obsolete patch.
(libvpx-1.7): New public variable.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Use LIBVPX-1.7 instead of LIBVPX.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source](patches): New field.
[arguments]: Add #:make-flags.
 2019-02-09 20:58:15 +01:00
Marius Bakke 4a3436449b
gnu: offlineimap: Remove redundant wrapper. 
* gnu/packages/mail.scm (offlineimap)[arguments]: Remove phase 'wrap-binary'.
 2019-02-09 20:58:15 +01:00
Marius Bakke 0ea0452c0a
gnu: Add xbanish. 
* gnu/packages/xdisorg.scm (xbanish): New public variable.
 2019-02-09 20:58:15 +01:00
Ludovic Courtès 50a93adc05
Merge branch 'staging' 2019-02-09 15:14:59 +01:00
Arun Isaac 722ac64cd7
gnu: plantuml: Update to 1.2019.0. 
* gnu/packages/uml.scm (plantuml): Update to 1.2019.0.
 2019-02-09 13:40:12 +05:30
Eric Bavier 68a116bd56
gnu: cool-retro-term: Upgrade to 1.1.1. 
* gnu/packages/terminals.scm (cool-retro-term)[source]: Upgrade to 1.1.1.
Remove patches.  Adjust filtering in snippet for added/removed fonts.
[arguments]: Return #t in 'add-alternate-name' phase.
* gnu/packages/patches/cool-retro-term-dont-check-uninit-member.patch,
  gnu/packages/patches/cool-retro-term-fix-array-size.patch,
  gnu/packages/patches/cool-retro-term-memory-leak-1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-02-09 00:50:16 -06:00
Eric Bavier 41313acebf
gnu: openmpi: Upgrade to 4.0.0. 
* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix
"undefined reference to `minor'" errors while linking against
libinfinipath.so.
* gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0.
[inputs]: Add libevent.
[arguments]: Simplify configure-flags.  Use system libevent.  Adjust romio
version strings.
(%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription.
 2019-02-09 00:50:16 -06:00
Tobias Geerinckx-Rice 1482531cd7
gnu: perl-io-compress: Update to 2.084. 
* gnu/packages/perl-compression.scm (perl-io-compress): Update to 2.084.
 2019-02-08 23:51:18 +01:00
Tobias Geerinckx-Rice b2993cb1e0
gnu: perl-compress-raw-zlib: Update to 2.084. 
* gnu/packages/perl-compression.scm (perl-compress-raw-zlib): Update to 2.084.
 2019-02-08 23:51:17 +01:00
Tobias Geerinckx-Rice a139501887
gnu: perl-compress-raw-bzip2: Update to 2.084. 
* gnu/packages/perl-compression.scm (perl-compress-raw-bzip2): Update to 2.084.
 2019-02-08 23:51:16 +01:00
Tobias Geerinckx-Rice 41eac1863a
gnu: gcab: Don't use NAME in source URI. 
* gnu/packages/package-management.scm (gcab)[source]: Hard-code name.
 2019-02-08 23:51:15 +01:00
Tobias Geerinckx-Rice a1785cfb6d
gnu: gcab: Update to 1.2. 
* gnu/packages/package-management.scm (gcab): Update to 1.2.
[source]: Remove snippet.
 2019-02-08 23:51:14 +01:00
Tobias Geerinckx-Rice 051ae68b7a
gnu: libraw: Update to 0.19.2. 
* gnu/packages/photo.scm (libraw): Update to 0.19.2.
 2019-02-08 23:51:14 +01:00
Tobias Geerinckx-Rice 7428d1693a
gnu: abiword: Don't use NAME in source URI. 
* gnu/packages/abiword.scm (abiword)[source]: Hard-code name.
 2019-02-08 23:51:13 +01:00
Tobias Geerinckx-Rice 64430c87b6
gnu: rdesktop: Don't use NAME in source URI. 
* gnu/packages/rdesktop.scm (rdesktop)[source]: Hard-code name.
 2019-02-08 23:51:12 +01:00
Tobias Geerinckx-Rice 9c2b56a377
gnu: compton: Don't use unstable tarball. 
* gnu/packages/compton.scm (compton)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:12 +01:00
Tobias Geerinckx-Rice 782b1224ec
gnu: bspwm: Don't use unstable tarball. 
* gnu/packages/wm.scm (bspwm)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:10 +01:00
Tobias Geerinckx-Rice a4880a2735
gnu: microscheme: Don't use unstable tarball. 
* gnu/packages/avr.scm (microscheme)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:10 +01:00
Tobias Geerinckx-Rice 39a7b72065
gnu: python-trezor-agent: Don't use unstable tarball. 
* gnu/packages/finance.scm (python-trezor-agent)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:09 +01:00
Tobias Geerinckx-Rice 1fd71120a7
gnu: geierlein: Don't use unstable tarball. 
* gnu/packages/finance.scm (geierlein)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:08 +01:00
Tobias Geerinckx-Rice 8b7ac58c16
gnu: ledger: Don't use unstable tarball. 
* gnu/packages/finance.scm (ledger)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:08 +01:00
Tobias Geerinckx-Rice d8d910e6e1
gnu: cbatticon: Don't use unstable tarball. 
* gnu/packages/admin.scm (cbatticon)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:07 +01:00
Tobias Geerinckx-Rice 807a30999d
gnu: interrobang: Use GIT-... helpers. 
* gnu/packages/admin.scm (interrobang)[version]: Use GIT-VERSION.
[source]: Use GIT-FILE-NAME.
 2019-02-08 23:51:06 +01:00
Tobias Geerinckx-Rice 7d6e8fda61
gnu: sedsed: Don't use unstable tarball. 
* gnu/packages/admin.scm (sedsed)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:05 +01:00
Tobias Geerinckx-Rice 9bc96d13ce
gnu: fdupes: Don't use unstable tarball. 
* gnu/packages/admin.scm (fdupes)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:04 +01:00
Tobias Geerinckx-Rice aa372292b3
gnu: cpulimit: Don't use unstable tarball. 
* gnu/packages/admin.scm (cpulimit)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:03 +01:00
Tobias Geerinckx-Rice 4b6456ce3b
gnu: progress: Don't use unstable tarball. 
* gnu/packages/admin.scm (progress)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:02 +01:00
Tobias Geerinckx-Rice fc204d24be
gnu: dstat: Don't use unstable tarball. 
* gnu/packages/admin.scm (dstat)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:02 +01:00
Tobias Geerinckx-Rice 43eb601f76
gnu: sunxi-tools: Don't use unstable tarball. 
* gnu/packages/admin.scm (sunxi-tools)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:51:01 +01:00
Tobias Geerinckx-Rice ecb589227c
gnu: igt-gpu-tools: Don't use NAME in source URI. 
* gnu/packages/admin.scm (igt-gpu-tools)[source]: Hard-code name.
 2019-02-08 23:51:00 +01:00
Tobias Geerinckx-Rice 213114a7b1
gnu: daemontools: Don't assume sources match NAME. 
* gnu/packages/admin.scm (daemontools)[source, argumenst]: Hard-code
name.
 2019-02-08 23:50:59 +01:00
Tobias Geerinckx-Rice 16572d0e02
gnu: nnn: Don't use NAME in source URI. 
* gnu/packages/admin.scm (nnn)[source]: Hard-code name.
 2019-02-08 23:50:59 +01:00
Tobias Geerinckx-Rice a0c693e173
gnu: thefuck: Don't use unstable tarball. 
* gnu/packages/admin.scm (thefuck)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:50:58 +01:00
Tobias Geerinckx-Rice e956d76ddb
gnu: masscan: Don't use unstable tarball. 
* gnu/packages/admin.scm (masscan)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:50:57 +01:00
Tobias Geerinckx-Rice ab213bfd04
gnu: pam-krb5: Don't use NAME in source URI. 
* gnu/packages/admin.scm (pam-krb5)[source]: Hard-code name.
 2019-02-08 23:50:57 +01:00
Tobias Geerinckx-Rice fe2f01664f
gnu: audit: Don't use NAME in source URI. 
* gnu/packages/admin.scm (audit)[source]: Hard-code name.
 2019-02-08 23:50:56 +01:00
Tobias Geerinckx-Rice e20796dc7a
gnu: hungrycat: Don't use NAME in source URI. 
* gnu/packages/admin.scm (hungrycat)[source]: Hard-code name.
 2019-02-08 23:50:55 +01:00
Tobias Geerinckx-Rice 631249ddc0
gnu: avogadro: Don't use unstable tarball. 
* gnu/packages/chemistry.scm (avogadro)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-08 23:50:55 +01:00
Tobias Geerinckx-Rice f44eca9468
gnu: launchmon: Don't use NAME in source URI. 
* gnu/packages/admin.scm (launchmon)[source]: Hard-code name.
 2019-02-08 23:50:54 +01:00
Tobias Geerinckx-Rice 1f6a970592
gnu: florence: Don't use NAME in source URI. 
* gnu/packages/accessibility.scm (florence)[source]: Hard-code name.
 2019-02-08 23:50:53 +01:00
Tobias Geerinckx-Rice d64e514777
gnu: i3blocks: Use GIT-FILE-NAME. 
* gnu/packages/wm.scm (i3blocks)[source]: Use GIT-FILE-NAME.
 2019-02-08 23:50:52 +01:00
Tobias Geerinckx-Rice 0fa63b8908
gnu: spice-protocol: Update to 0.12.15. 
* gnu/packages/spice.scm (spice-protocol): Update to 0.12.15.
 2019-02-08 23:50:52 +01:00
Tobias Geerinckx-Rice 15c661ec8e
gnu: torsocks: Update to 2.3.0. 
* gnu/packages/tor.scm (torsocks): Update to 2.3.0.
[inputs]: Remove which.
[arguments]: Update 'absolutize' substitutions.
 2019-02-08 23:50:51 +01:00
Tobias Geerinckx-Rice d77ade87fe
gnu: torsocks: Don't use NAME in source URI. 
* gnu/packages/tor.scm (torsocks)[source]: Hard-code name.
 2019-02-08 23:50:50 +01:00
Tobias Geerinckx-Rice c97a1c4297
gnu: sdl2-ttf: Update to 2.0.15. 
* gnu/packages/sdl.scm (sdl2-ttf): Update to 2.0.15.
 2019-02-08 23:50:50 +01:00
Ricardo Wurmus 307182d4f7
gnu: rcas-web: Update to 0.1.0. 
* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.1.0.
[inputs]: Replace guile2.2-redis with guile-redis.
 2019-02-08 22:45:12 +01:00
Arun Isaac 4745f8d71d
gnu: swaks: Update to 20181104.0. 
* gnu/packages/mail.scm (swaks): Update to 20181104.0.
 2019-02-09 01:08:36 +05:30
Ricardo Wurmus 4714b00e7a
gnu: Add dune-pdelab. 
* gnu/packages/maths.scm (dune-pdelab): New variable.
 2019-02-08 19:15:03 +01:00
Ricardo Wurmus 85b9371cbe
gnu: Add dune-functions. 
* gnu/packages/maths.scm (dune-functions): New variable.
 2019-02-08 18:29:30 +01:00
Ricardo Wurmus 0e50630f15
gnu: Add dune-typetree. 
* gnu/packages/maths.scm (dune-typetree): New variable.
 2019-02-08 17:58:32 +01:00
Ricardo Wurmus ab03d899ca
gnu: Add dune-alugrid. 
* gnu/packages/maths.scm (dune-alugrid): New variable.
 2019-02-08 17:52:47 +01:00
Danny Milosavljevic fc80f54e29
gnu: Add usbmuxd. 
* gnu/packages/libusb.scm (usbmuxd): New variable.
 2019-02-08 16:44:51 +01:00
Danny Milosavljevic bc4e8d3e64
gnu: Add ifuse. 
* gnu/packages/libusb.scm (ifuse): New variable.
 2019-02-08 16:44:51 +01:00
Danny Milosavljevic 6d0b50f651
gnu: libimobiledevice: Propagate "libplist". 
* gnu/packages/libusb.scm (libimobiledevice)[propagated-inputs]: Add
libplist.
[inputs]: Remove libplist.
 2019-02-08 16:44:49 +01:00
Ricardo Wurmus f57bf15cd8
gnu: guile-redis: Update to 1.3.0. 
* gnu/packages/guile-xyz.scm (guile-redis): Update to 1.3.0.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus 5a70aa7d69
gnu: Add dune-localfunctions. 
* gnu/packages/maths.scm (dune-localfunctions): New variable.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus ea51d3578c
gnu: Add dune-istl. 
* gnu/packages/maths.scm (dune-istl): New variable.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus ef6e69fdec
gnu: Add dune-grid. 
* gnu/packages/maths.scm (dune-grid): New variable.
 2019-02-08 16:26:20 +01:00
Tobias Geerinckx-Rice 9d58e8819f
gnu: umoci: Update to 0.4.4. 
* gnu/packages/virtualization.scm (umoci): Update to 0.4.4.
 2019-02-08 12:09:58 +01:00
Christopher Baines 6fd72f7094
gnu: guile-squee: Fix the license. 
The license originally specified in the package definition was incorrect. The
true license is the Lesser GNU General Public License.

* gnu/packages/guile-xyz.scm (guile-squee): Change license to license:lgpl3+.
 2019-02-08 10:26:20 +00:00
Ricardo Wurmus d41f63942b
gnu: python-2.7: Rebuild bytecode. 
Fixes <https://bugs.gnu.org/22010>.

* gnu/packages/python.scm (python-2.7)[arguments]: Add phase
"rebuild-bytecode".
(python-3.7)[arguments]: Replace "rebuild-bytecode" phase; remove outdated
comment.
 2019-02-08 10:26:53 +01:00
Eric Bavier 7b84610e21
gnu: hdf5: Upgrade to 1.8.21. 
* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
 2019-02-07 21:20:47 -06:00
Eric Bavier 7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
  gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
 2019-02-07 21:20:47 -06:00
Eric Bavier 2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
 2019-02-07 21:20:23 -06:00
Pierre Neidhardt 674d180cfa
gnu: emacs-fish-completion: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-fish-completion): Update to 1.0.
 2019-02-07 23:10:05 +01:00
Tim Stahel 6f8ade6ee6
gnu: Add gpx. 
* gnu/packages/engineering.scm (gpx): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-07 22:36:01 +01:00
Ricardo Wurmus 242dbd8e5d
gnu: Add dune-geometry. 
* gnu/packages/maths.scm (dune-geometry): New variable.
 2019-02-07 22:36:01 +01:00
Ricardo Wurmus 3847d1f22f
gnu: Add dune-common. 
* gnu/packages/maths.scm (dune-common): New variable.
 2019-02-07 22:36:01 +01:00
Dan Frumin 7d60df330a
gnu: Add coq-autosubst 
* gnu/packages/coq.scm (coq-autosubst): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-07 22:30:32 +01:00
Marius Bakke df2bf40eec
gnu: libxslt: Update to 1.1.33. 
* gnu/packages/xml.scm (libxslt): Update to 1.1.33.
 2019-02-07 22:10:18 +01:00
Marius Bakke 723c356d80
gnu: libxml2: Update to 2.9.9. 
* gnu/packages/xml.scm (libxml2): Update to 2.9.9.
 2019-02-07 22:10:18 +01:00
Marius Bakke 85559eb88b
gnu: openssl: Update to 1.0.2q. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2q.
 2019-02-07 22:10:17 +01:00
Marius Bakke 28ae145ba6
gnu: python: Update to 3.7.2. 
* gnu/packages/python.scm (python-3.7): Update to 3.7.2.
 2019-02-07 22:10:17 +01:00
Marius Bakke d9464ca53a
gnu: pcre2: Update to 10.32. 
* gnu/packages/pcre.scm (pcre2): Update to 10.32.
 2019-02-07 22:10:17 +01:00
Marius Bakke 596c54c967
gnu: mit-krb5: Update to 1.17. 
* gnu/packages/kerberos.scm (mit-krb5): Update to 1.17.
 2019-02-07 22:10:17 +01:00
Marius Bakke 28a873f208
gnu: libpng: Update to 1.6.36. 
* gnu/packages/image.scm (libpng): Update to 1.6.36.
 2019-02-07 22:10:17 +01:00
Marius Bakke dfc941a943
gnu: binutils: Update to 2.32. 
* gnu/packages/base.scm (binutils): Update to 2.32.
 2019-02-07 22:10:17 +01:00
Marius Bakke e34ae70788
gnu: mpfr: Update to 4.0.2. 
* gnu/packages/multiprecision.scm (mpfr): Update to 4.0.2.
 2019-02-07 22:10:17 +01:00
Marius Bakke 4ee5482a08
gnu: bison: Update to 3.3.2. 
* gnu/packages/bison.scm (bison): Update to 3.3.2.
 2019-02-07 22:10:17 +01:00
Marius Bakke a5be549e39
gnu: libarchive: Remove graft for 3.3.3. 
* gnu/packages/patches/libarchive-CVE-2017-14166.patch,
gnu/packages/patches/libarchive-CVE-2017-14502.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/backup.scm (libarchive): Update to 3.3.3.
[source](patches): Adjust for 3.3.3.
[replacement]: Remove field.
(libarchive-3.3.3): Remove variable.
 2019-02-07 22:10:17 +01:00
Marius Bakke 027250f1a6
gnu: python2: Incorporate grafted changes. 
* gnu/packages/python.scm (python-2.7)[source](patches): Add
python2-CVE-2018-14647.patch and python2-CVE-2018-1000802.patch.
[replacement]: Remove field.
(python-2/fixed): Remove variable.
 2019-02-07 22:10:16 +01:00
Marius Bakke 0293b353bd
gnu: sqlite: Remove graft for 3.26.0. 
* gnu/packages/sqlite.scm (sqlite): Update to 3.26.0.
[replacement]: Remove.
(sqlite-3.26.0): Remove variable.
 2019-02-07 22:10:16 +01:00
Marius Bakke cc43d807c0
gnu: file: Incorporate grafted changes. 
* gnu/packages/file.scm (file)[replacement]: Remove.
[source](patches): New field.
(file/fixed): Remove variable.
 2019-02-07 22:10:16 +01:00
Mark H Weaver d5240bc09d
gnu: linux-libre: Update to 4.20.7. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.7.
(%linux-libre-hash): Update hash.
 2019-02-07 13:56:44 -05:00
Mark H Weaver 43194fbe3c
gnu: linux-libre@4.19: Update to 4.19.20. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.20.
(%linux-libre-4.19-hash): Update hash.
 2019-02-07 13:55:42 -05:00
Mark H Weaver 848e28aab5
gnu: linux-libre@4.14: Update to 4.14.98. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.98.
(%linux-libre-4.14-hash): Update hash.
 2019-02-07 13:54:19 -05:00
Mark H Weaver 4888c21543
gnu: linux-libre@4.9: Update to 4.9.155. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.155.
 2019-02-07 13:53:27 -05:00
Mark H Weaver 2b06fcdcd7
gnu: linux-libre@4.4: Update to 4.4.173. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.173.
 2019-02-07 13:52:01 -05:00
Pierre Neidhardt 285bf324f0
gnu: Add emacs-redshank. 
* gnu/packages/emacs-xyz.scm (emacs-redshank): New variable.
 2019-02-07 19:29:49 +01:00
Ludovic Courtès b07712bfb1
gnu: openmpi: Add dependency on SLURM. 
This allows users to run Open MPI programs with 'srun'.

* gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM.
[arguments]: Add "--with-pmi" to #:configure-flags.
 2019-02-07 15:46:45 +01:00
Rutger Helling 89ea6252b6
gnu: flatpak: Update to 1.2.0. 
* gnu/packages/package-management.scm (flatpak): Update to 1.2.0.
 2019-02-07 14:45:54 +01:00
Brett Gilio a9ba0a3154
gnu: python2-rope: Update to 0.11.0 
From 1e6322de0c3227827176fb460a11da21a6bba08d Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg@posteo.net>
Date: Wed, 6 Feb 2019 15:23:56 -0600
Subject: [PATCH] gnu: python2-rope: Update to 0.11.0

* gnu/packages/python-xyz.scm (python2-rope): Update to 0.11.0
 2019-02-07 08:51:45 +01:00
Vagrant Cascadian 86ae491f37
gnu: python-configargparse: Update to 0.14.0. 
* gnu/packages/python-xyz.scm
  (python-configargparse): Update to 0.14.0.
 2019-02-07 08:39:34 +01:00
Vagrant Cascadian 746c074bbe
gnu: python-wheel: Update to 0.32.2. 
* gnu/packages/python-xyz.scm (python-wheel): Update to 0.32.2.
 2019-02-07 08:39:34 +01:00
Marius Bakke 69fb26d4f5
gnu: mariadb: Add comments about failing tests. 
* gnu/packages/databases.scm (mariadb): Add comments.
 2019-02-06 23:30:34 +01:00
Kyle Meyer 3ef29c00ed
gnu: Add datefudge. 
* gnu/packages/time.scm (datefudge): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-06 23:06:18 +01:00
Ludovic Courtès 6732171924
gnu: iproute2: Update to 4.20.0. 
* gnu/packages/linux.scm (iproute): Update to 4.20.0.
 2019-02-06 23:06:18 +01:00
Kei Kebreau 25945666e3
gnu: abcde: Update to 2.9.3. 
* gnu/packages/cdrom.scm (abcde): Update to 2.9.3.
[source]: Update snippet.
 2019-02-06 16:49:12 -05:00
Ricardo Wurmus 6df215f8c8
gnu: star: Update to 2.7.0b. 
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0b.
[arguments]: Add "add-missing-header" build phase.
 2019-02-06 21:32:16 +01:00
Kei Kebreau d11840b43e
gnu: wxmaxima: Update to 19.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
 2019-02-06 12:52:27 -05:00
Kei Kebreau a4362fba0e
gnu: maxima: Update to 5.42.2. 
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
 2019-02-06 12:52:27 -05:00
Pierre Neidhardt 808136bdb6
gnu: emacs-lispyville: Update to 20181217. 
* gnu/packages/emacs-xyz.scm (emacs-lispyville): Update to 20181217.
 2019-02-06 16:21:49 +01:00
Pierre Neidhardt caf810d355
gnu: emacs-lispy: Update to 20190205. 
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 20190205.
 2019-02-06 16:20:32 +01:00
Pierre Neidhardt de87d70e54
gnu: emacs-evil-collection: Update to 20190206. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190206.
 2019-02-06 16:20:23 +01:00
Pierre Neidhardt b6a7697914
gnu: emacs-evil: Update to 1.2.14. 
* gnu/packages/emacs-xyz.scm (emacs-evil): Update to 1.2.14.
 2019-02-06 16:18:28 +01:00
Christopher Baines 61dafdc0fe
gnu: Add guile-squee. 
* gnu/packages/guile-xyz.scm (guile-squee): New variable.
 2019-02-06 13:11:35 +00:00
Ricardo Wurmus ba88eea2b3
Merge branch 'master' into core-updates 2019-02-06 13:03:26 +01:00
Rutger Helling 9b43a73600
gnu: vulkan-headers: Update to 1.1.99. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.99.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.97.0.
 2019-02-06 12:10:52 +01:00
Christopher Baines e88fd8beb1
gnu: ocaml-splittable-random: Change @defn to @acronym. 
I see an error when running guix package -s relating to this:

  Throw to key `parser-error' with args `(#f "Unknown command" defn)'.

* gnu/packages/ocaml.scm (ocaml-splittable-random)[description]: Change @defn
to @acronym.
 2019-02-06 09:18:08 +00:00
Christopher Baines 1d5d0447d3
gnu: ocaml-spawn: Add missing @end itemize to description. 
As otherwise this error appears when running things like guix package -s:

  texinfo.scm:745:27: Throw to key `parser-error' with args `(#<input: string
  35ad0e0> "EOF while reading a token " "reading char data")'.

* gnu/packages/ocaml.scm (ocaml-spawn)[description]: Add @end itemize to the
end.
 2019-02-06 09:16:50 +00:00
Arun Isaac f4f8c23bae
gnu: mpop: Update to 1.4.2. 
* gnu/packages/mail.scm (mpop): Update to 1.4.2.
 2019-02-06 13:05:45 +05:30
Nicolas Goaziou 00e18f9fa9
gnu: musescore: Update to 3.0.2. 
* gnu/packages/music.scm (musescore): Update to 3.0.2.
[source]: Add patch.
* gnu/packages/patches/musescore-fix-use_webengine.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-02-05 23:11:43 +01:00
Julien Lepiller 8baa5c8b7c
gnu: Add ocaml-core-kernel. 
* gnu/packages/ocaml.scm (ocaml-core-kernel): New variable.
 2019-02-05 22:34:31 +01:00
Julien Lepiller 514b542018
gnu: Add ocaml-core. 
* gnu/packages/ocaml.scm (ocaml-core): New variable.
 2019-02-05 22:34:28 +01:00
Julien Lepiller 9e81db80eb
gnu: Add ocaml-spawn. 
* gnu/packages/ocaml.scm (ocaml-spawn): New variable.
 2019-02-05 22:34:26 +01:00
Julien Lepiller 3e3d5ffc34
gnu: Add ocaml-configurator. 
* gnu/packages/ocaml.scm (ocaml-configurator): New variable.
 2019-02-05 22:34:24 +01:00
Julien Lepiller dc361a2563
gnu: Add ocaml-jane-street-headers. 
* gnu/packages/ocaml.scm (ocaml-jane-street-headers): New variable.
 2019-02-05 22:34:22 +01:00
Julien Lepiller 5995e6d104
gnu: Add ocaml-splittable-random. 
* gnu/packages/ocaml.scm (ocaml-splittable-random): New variable.
 2019-02-05 22:34:20 +01:00
Julien Lepiller 255f1cae42
gnu: Add ocaml-ppx-jane. 
* gnu/packages/ocaml.scm (ocaml-ppx-jane): New variable.
 2019-02-05 22:34:17 +01:00
Julien Lepiller 7bd4b85e9b
gnu: Add ocaml-ppx-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-ppx-bin-prot): New variable.
 2019-02-05 22:34:15 +01:00
Julien Lepiller d13b9c5f67
gnu: Add ocaml-ppx-base. 
* gnu/packages/ocaml.scm (ocaml-ppx-base): New variable.
 2019-02-05 22:34:13 +01:00
Julien Lepiller 48ad1181d0
gnu: Add ocaml-ppx-typerep-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
 2019-02-05 22:34:11 +01:00
Julien Lepiller f4304c1d6c
gnu: Add ocaml-ppx-js-style. 
* gnu/packages/ocaml.scm (ocaml-ppx-js-style): New variable.
 2019-02-05 22:34:09 +01:00
Julien Lepiller 4e4e5fb1df
gnu: Add ocaml-ppx-expect. 
* gnu/packages/ocaml.scm (ocaml-ppx-expect): New variable.
 2019-02-05 22:34:07 +01:00
Julien Lepiller 7ec9a45db3
gnu: Add ocaml-ppx-assert. 
* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
 2019-02-05 22:34:04 +01:00
Julien Lepiller 6018802d9c
gnu: Add ocaml-ppx-fail. 
* gnu/packages/ocaml.scm (ocaml-ppx-fail): New variable.
 2019-02-05 22:34:02 +01:00
Julien Lepiller 1365ae47d1
gnu: Add ocaml-ppx-let. 
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
 2019-02-05 22:34:00 +01:00
Julien Lepiller 79967eeafc
gnu: add ocaml-ppx-optcomp. 
* gnu/packages/ocaml.scm (ocaml-ppx-optcomp): New variable.
 2019-02-05 22:33:58 +01:00
Julien Lepiller 3f4ecf6649
gnu: Add ocaml-ppx-optional. 
* gnu/packages/ocaml.scm (ocaml-ppx-optional): New variable.
 2019-02-05 22:33:56 +01:00
Julien Lepiller 6a1140012c
gnu: Add ocaml-ppx-pipebang. 
* gnu/packages/ocaml.scm (ocaml-ppx-pipebang): New variable.
 2019-02-05 22:33:53 +01:00
Julien Lepiller 44a2ceca19
gnu: Add ocaml-ppx-sexp-message. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-message): New variable.
 2019-02-05 22:33:51 +01:00
Julien Lepiller e93281507d
gnu: Add ocaml-ppx-sexp-value. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-value): New variable.
 2019-02-05 22:33:49 +01:00
Julien Lepiller a58118ca6b
gnu: Add ocaml-typerep. 
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
 2019-02-05 22:33:47 +01:00
Julien Lepiller 164b06daeb
gnu: Add ocaml-ppx-here. 
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
 2019-02-05 22:33:42 +01:00
Julien Lepiller b42afab2e2
gnu: Add ocaml-ppx-bench. 
* gnu/packages/ocaml.scm (ocaml-ppx-bench): New variable.
 2019-02-05 22:33:40 +01:00
Julien Lepiller db67f56901
gnu: Add ocaml-ppx-enumerate. 
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
 2019-02-05 22:33:37 +01:00
Julien Lepiller 6692f65218
gnu: Add ocaml-ppx-hash. 
* gnu/packages/ocaml.scm (ocaml-ppx-hash): New variable.
 2019-02-05 22:33:35 +01:00
Julien Lepiller 49b01fa3e9
gnu: Add ocaml-octavius. 
* gnu/packages/ocaml.scm (ocaml-octavius): New variable.
 2019-02-05 22:33:33 +01:00
Julien Lepiller a0584d6c97
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
 2019-02-05 22:33:31 +01:00
Julien Lepiller e6f08ec93a
gnu: Add ocaml-ppx-custom-printf. 
* gnu/packages/ocaml.scm (ocaml-ppx-custom-printf): New variable.
 2019-02-05 22:33:29 +01:00
Julien Lepiller 7523674c2b
gnu: Add ocaml-ppx-variants-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
 2019-02-05 22:33:27 +01:00
Julien Lepiller c7cf165e38
gnu: Add ocaml-ppx-sexp-conv. 
* gnu/packaes/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
 2019-02-05 22:33:25 +01:00
Julien Lepiller 7b685486ce
gnu: Add ocaml-ppx-fields-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-fields-conv): New variable.
 2019-02-05 22:33:23 +01:00
Julien Lepiller d9f8433e17
gnu: Add ocaml-variantslib. 
* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
 2019-02-05 22:33:21 +01:00
Julien Lepiller 143685fd1a
gnu: Add ocaml-fieldslib. 
* gnu/packages/ocaml.scm (ocaml-fieldslib): New variable.
 2019-02-05 22:33:19 +01:00
Julien Lepiller c16c8bb68d
gnu: Add ocaml-ppx-compare. 
* gnu/packages/ocaml.scm (ocaml-ppx-compare): New variable.
 2019-02-05 22:33:17 +01:00
Julien Lepiller 7e12b4c2bb
gnu: ocaml: Use propagated-inputs. 
* gnu/packages/ocaml.scm (ocaml-ppxlib, ocaml-ppx-derivers, ocaml-base)
(ocaml-sexplib): Use propagated-inputs.
 2019-02-05 22:33:15 +01:00
Julien Lepiller 51e52f47df
gnu: ocaml-ppx-derivers: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-ppx-derivers)[properties]: Add
upstream-name.
 2019-02-05 22:33:10 +01:00
Andreas Enge 6c8666b451
gnu: unison: Update to 2.51.1. 
* gnu/packages/ocaml.scm (unison): Update to 2.51.1, use source from git
instead of svn and remove a snippet, and compile with current OCaml.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-05 22:32:51 +01:00
Efraim Flashner 4aeb7f34c9
gnu: shflags: Don't use unstable tarball. 
* gnu/packages/version-control.scm (shflow)[source]: Use 'git-fetch'.
[native-inputs]: Remove gzip, tar.
 2019-02-05 22:17:14 +02:00
Tobias Geerinckx-Rice 66416c0c1c
gnu: cvs-fast-export: Update to 1.45. 
* gnu/packages/version-control.scm (cvs-fast-export): Update to 1.45.
[arguments]: Remove 'fix-setpython-PATH' phase.
 2019-02-05 19:48:23 +01:00
Tobias Geerinckx-Rice cfc92cd7bf
gnu: cvs-fast-export: Don't use NAME in source URI. 
* gnu/packages/version-control.scm (cvs-fast-export)[source]: Hard-code name.
 2019-02-05 19:48:22 +01:00
Efraim Flashner fd3638d89a
gnu: python-sh: Use custom 'check phase. 
* gnu/packages/python-xyz.scm (python-sh)[arguments]: Use custom 'check
phase as suggested by upstream documentation.
[native-inputs]: Add python-coverage.
 2019-02-05 19:54:10 +02:00
Tobias Geerinckx-Rice ea4b6ffd24
gnu: darcs: Update to 2.14.2. 
* gnu/packages/version-control.scm (darcs): Update to 2.14.2.
 2019-02-05 18:47:10 +01:00
Tobias Geerinckx-Rice ab1019f165
gnu: nyx: Update to 2.1.0. 
* gnu/packages/tor.scm (nyx): Update to 2.1.0.
[source]: Remove patch.
* gnu/packages/patches/nyx-show-header-stats-with-python3.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 18:47:09 +01:00
Tobias Geerinckx-Rice cc2c5c22b5
gnu: noice: Update to 0.7. 
* gnu/packages/suckless.scm (noice): Update to 0.7.
 2019-02-05 18:47:09 +01:00
Christopher Baines 406ef44258
gnu: Add guile-dbd-postgresql. 
Currently, there are packages for guile-dbi and guile-dbd-sqlite3, but the
PostgreSQL and MySQL parts are not packaged. As GNA which did host the release
archives for guile-dbi no longer exists, this package definition uses the
upstream Git repository.

* gnu/packages/guile-xyz.scm (guile-dbd-postgresql): New variable.
(guile-dbi)[arguments]: Add guile-dbd-postgresql to the rpath through the
[inputs]: Add guile-dbd-postgresql.
 2019-02-05 15:43:19 +00:00
Tobias Geerinckx-Rice 50f28ac4dc
gnu: pscircle: Update to 1.3.0. 
* gnu/packages/admin.scm (pscircle): Update to 1.3.0.
 2019-02-05 16:38:25 +01:00
Tobias Geerinckx-Rice 494b702a89
gnu: pscircle: Don't use unstable tarball. 
* gnu/packages/admin.scm (pscircle)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-05 16:38:25 +01:00
Maxim Cournoyer f9dff4f7fa
gnu: emacs-ert-runner: Fix lisp directory warning. 
This fixes the warning message such as: "Warning: Lisp directory
'/tmp/guix-build-emacs-ert-runner-0.7.0-1.90b8fdd.drv-0/source': No such file
or directory" that would be printed upon running ert-runner.

* gnu/packages/emacs-xyz.scm (emacs-ert-runner)[phases]{install-executable}:
Filter out the temporary source directory from the paths composing the
EMACSLOADPATH variable used in the wrapper.
 2019-02-05 10:09:11 -05:00
Andreas Enge 8cad7adb59
gnu: fdroidserver: Update to 1.1.1. 
* gnu/packages/android.scm (fdroidserver): Update to 1.1.1.
[propagated-inputs]: Add python-defusedxml.
 2019-02-05 15:55:58 +01:00
Maxim Cournoyer 975a953bfd
gnu: Add cqfd. 
* gnu/packages/docker.scm (cqfd): New variable.
 2019-02-05 09:33:39 -05:00
Tobias Geerinckx-Rice 5d941f4eda
gnu: thefuck: Update to 3.28. 
* gnu/packages/admin.scm (thefuck): Update to 3.28.
 2019-02-05 15:31:02 +01:00
Tobias Geerinckx-Rice 46f3e9358a
gnu: lynis: Update to 2.7.1. 
* gnu/packages/admin.scm (lynis): Update to 2.7.1.
 2019-02-05 15:31:01 +01:00
Rutger Helling a10050e2dd
gnu: wine-staging: Update to 4.1. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.1.
* gnu/packages/wine.scm (wine-staging): Update to 4.1.
 2019-02-05 12:01:13 +01:00
Rutger Helling 12a3abc6cc
gnu: retroarch: Fix wayland backend. 
* gnu/packages/emulators.scm (retroarch): Fix wayland backend.
[arguments]: Hard-code wayland-protocols.
[native-inputs]: Add wayland-protocols.
 2019-02-05 11:37:29 +01:00
Christopher Baines fd9a6d83c2
gnu: artanis: Make some improvements. 
* gnu/packages/guile-xyz.scm (artanis): Remove a tab character by the
revision.
[arguments]: Patch the site-dir for the help command, to make it work. Wrap
the art command such that it finds guile-json and guile-redis.
 2019-02-05 09:24:34 +00:00
Andrew Miloradovsky 16bb27f281
gnu: Add xmagnify. 
* gnu/packages/accessibility.scm (xmagnify): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-05 10:07:52 +01:00
Rutger Helling 45267af1a3
gnu: retroarch: Update to 1.7.6. 
* gnu/packages/emulators.scm (retroarch): Update to 1.7.6.
[inputs]: Add libxrandr.
 2019-02-05 08:24:20 +01:00
Nicolas Goaziou 2dd662f48e
gnu: emacs-org, emacs-org-contrib: Update to 9.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.2.1.
(emacs-org-contrib): Update to 20190203, i.e., 9.2.1.
 2019-02-05 07:42:30 +01:00
Leo Famulari e36d043882
gnu: Remove unused patch 'mcron-install.patch'. 
This is a followup to commit cfbf6de18c.

* gnu/packages/patches/mcron-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:50 +01:00
Leo Famulari 484f010dd7
gnu: Remove unused patch 'ocaml-graph-honor-source-date-epoch.patch'. 
This is a followup to commit 564cf93f2a.

* gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 5cc3dbbccd
gnu: Remove unused patch 'ocaml-findlib-make-install.patch'. 
This is a followup to commit bff6739d5e.

* gnu/packages/patches/ocaml-findlib-make-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 5baf78999c
gnu: Remove unused patch 'python2-rdflib-drop-sparqlwrapper.patch'. 
* gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 800d74dc9a
gnu: Remove unused patch 'openldap-CVE-2017-9287.patch'. 
This is a followup to commit 47415332d7.

* gnu/packages/patches/openldap-CVE-2017-9287.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 99ee274f0d
gnu: Remove unused patch 'glibc-memchr-overflow-i686.patch'. 
This is a followup to commit 67d527e35e.

* gnu/packages/patches/glibc-memchr-overflow-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 1d1b0b1fb1
gnu: Remove unused patch 'net-tools-bitrot.patch'. 
This is a followup to commit b5f610620b.

* gnu/packages/patches/net-tools-bitrot.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 035542e93a
gnu: Remove unused patch 'xboing-CVE-2004-0149.patch'. 
This is a followup to commit 740a335558.

* gnu/packages/patches/xboing-CVE-2004-0149.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:56:39 +01:00
Leo Famulari 6bf2201350
gnu: Remove unused patch 'ao-cad-aarch64-support.patch'. 
This is a followup to commit 28f4d56dd3.

* gnu/packages/patches/ao-cad-aarch64-support.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:51:34 +01:00
Leo Famulari ee2875e57d
gnu: Remove unused patch 'blender-newer-ffmpeg.patch'. 
This is a followup to commit fc51c28ae8.

* gnu/packages/patches/blender-newer-ffmpeg.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:46:26 +01:00
Leo Famulari bfa3e64d7f
gnu: Removed unused patch 'readline-7.0-mingw.patch'. 
This patch was introduced in commit ae12d58627,
but it was never used.

See <https://bugs.gnu.org/26581> for more information.

* gnu/packages/patches/readline-7.0-mingw.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:45:25 +01:00
Gabriel Hondet 308d72bfe4
gnu: Add ocaml-ppx-inline-test. 
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-04 22:03:30 +01:00
Gabriel Hondet b2c2c415c5
gnu: ocaml-migrate-parsetree: Update to 1.2.0. 
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Update to 1.2.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-04 22:03:27 +01:00
Gabriel Hondet 625a3daa12
gnu: dune: Update to 1.6.3. 
* gnu/packages/ocaml.scm (dune): Update to 1.6.3.
* guix/build/dune-build-system.scm (build): Use --libdir.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-02-04 22:03:22 +01:00
Tobias Geerinckx-Rice 8c35a6dd20
gnu: gx, go-github-com-whyrusleeping-gx-util: Update to 0.14.1. 
* gnu/packages/ipfs.scm (gx, go-github-com-whyrusleeping-gx-util): Update to 0.14.1.
 2019-02-04 21:46:56 +01:00
Tobias Geerinckx-Rice a702285275
gnu: gambit-c: Update to 4.9.2. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.9.2.
 2019-02-04 21:46:55 +01:00
Tobias Geerinckx-Rice d6bbb7e549
gnu: autossh: Update to 1.4g. 
* gnu/packages/ssh.scm (autossh): Update to 1.4g.
 2019-02-04 21:46:55 +01:00
Tobias Geerinckx-Rice 26045af93c
gnu: autossh: Use HTTPS home page. 
* gnu/packages/ssh.scm (autossh)[source, home-page]: Use HTTPS.
 2019-02-04 21:46:55 +01:00
Tobias Geerinckx-Rice 627c6531f0
gnu: sshuttle: Update to 0.78.5. 
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.5.
[native-inputs]: Add python-flake8 and python-pytest-cov.
Remove implied python-pytest.
 2019-02-04 21:46:55 +01:00
Oleg Pykhalov 14a6699c17
gnu: php: Fix test failure. 
* gnu/packages/php.scm (php)[arguments]: Delete
'ext/curl/tests/curl_basic_009.phpt' file.
 2019-02-04 23:12:51 +03:00
Oleg Pykhalov 965ff0233e
gnu: gtk-vnc: Update to 0.9.0. 
* gnu/packages/gnome.scm (gtk-vnc): Update to 0.9.0.
 2019-02-04 22:44:53 +03:00
Ludovic Courtès 44cfbb6233
gnu: youtube-dl: Update to 2019.01.30.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.30.1.
 2019-02-04 16:20:01 +01:00
Ricardo Wurmus 3869effdd5
gnu: python-sh: Remove duplicate. 
* gnu/packages/python-xyz.scm (python-sh): Remove duplicate definition.
 2019-02-04 12:15:09 +01:00
Ricardo Wurmus c5b806a94a
gnu: go-github-com-minio-sha256-simd: Remove duplicate. 
* gnu/packages/syncthing.scm (go-github-com-minio-sha256-simd): Remove
duplicate.
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): Bump revision to
supersede the older duplicate.
 2019-02-04 12:13:07 +01:00
Ricardo Wurmus e24ef3698d
gnu: ecl-cl-markup: Remove duplicate. 
* gnu/packages/lisp.scm (ecl-cl-markup): Rename duplicate from this...
(ecl-cl-css): ...to this.
 2019-02-04 12:07:51 +01:00
Ricardo Wurmus 39ee82ffeb
gnu: python-astor: Remove duplicate. 
* gnu/packages/python-xyz.scm (python-astor): Remove duplicate.
 2019-02-04 12:06:29 +01:00
Ricardo Wurmus 42f0b0c21e
gnu: Add missing module reference. 
This is a follow-up to commit 05b4b3ea05.

* gnu/packages/python-xyz.scm: Add missing reference to (gnu packages
monitoring).
 2019-02-04 12:05:43 +01:00
Ricardo Wurmus d9b0216b6f
gnu: python-send2trash: Remove duplicates. 
* gnu/packages/python-xyz.scm (python-send2trash, python2-send2trash): Remove
duplicates.
[source]: Fetch from git.
 2019-02-04 11:57:14 +01:00
Ricardo Wurmus 05b4b3ea05
gnu: python-prometheus-client: Remove duplicate. 
* gnu/packages/monitoring.scm (python-prometheus-client): Update to 0.5.0.
* gnu/packages/python-xyz.scm (python-prometheus-client,
python2-prometheus-client): Remove variables.
 2019-02-04 11:46:10 +01:00
Ricardo Wurmus 15218d4e18
gnu: guile-wisp: Update to 0.9.9.1. 
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 0.9.9.1.
[arguments]: Add phases to build and install Emacs files.
[native-inputs]: Add emacs-minimal.
 2019-02-04 11:15:52 +01:00
Vagrant Cascadian 8c00379c47
gnu: 0ad: Update to 0.0.23b-alpha. 
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23b-alpha.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-02-04 10:49:10 +01:00
Ricardo Wurmus 1e957fabcf
gnu: borg: Make man pages reproducible. 
* gnu/packages/backup.scm (borg)[arguments]: Add
"remove-documentation-timestamps" phase.
 2019-02-04 10:49:10 +01:00
Tobias Geerinckx-Rice 26b7d23aa6
gnu: containerd: Update to 1.2.2. 
* gnu/packages/docker.scm (containerd): Update to 1.2.2.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice 17d25019fd
gnu: docker-cli: Use HTTPS home page. 
* gnu/packages/docker.scm (docker-cli)[home-page]: Use HTTPS.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice 3cfa236e56
gnu: freeipmi: Update to 1.6.3. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.3.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice b29909b40e
gnu: Remove duplicate import from (gnu packages gnome). 
* gnu/packages/messaging.scm (define-module): Remove duplicate module
imports.  Order the remainder alphabetically.
 2019-02-04 09:39:12 +01:00
Tobias Geerinckx-Rice 7a66d8a464
gnu: gnome-mpv: Update to 0.16. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.16.
 2019-02-04 09:39:11 +01:00
Tobias Geerinckx-Rice f0e6859310
gnu: jo: Update to 1.2. 
* gnu/packages/web.scm (jo): Update to 1.2.
 2019-02-04 09:39:11 +01:00
Efraim Flashner 1009e6e7ec
gnu: go@1.4: Build with binutils-gold on armhf and aarch64. 
* gnu/packages/golang.scm (go@1.4)[native-inputs]: Add binutils-gold
for armhf-linux and aarch64-linux.
 2019-02-04 08:07:47 +02:00
Efraim Flashner 28317d4990
gnu: Add binutils-gold. 
This commit is thanks to Guix Days.

* gnu/packages/base.scm (binutils-gold): New variable.
 2019-02-04 08:07:39 +02:00
Vagrant Cascadian 4da4e952dd
gnu: u-boot: Update to 2019.01. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2019.01.
(u-boot-tools): Disable CONFIG_SOUND in sandbox configs.
(u-boot-pinebook)[source]: Remove patches.
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch,
gnu/packages/patches/u-boot-pinebook-dts.patch,
gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch,
gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch,
gnu/packages/patches/u-boot-pinebook-syscon-node.patch,
gnu/packages/patches/u-boot-pinebook-video-bridge.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-02-04 00:21:48 +01:00
Danny Milosavljevic c7797b75cc
gnu: efilinux: Fix indentation of source code. 
Follow-up to 6adfcbeab1.

* gnu/packages/efi.scm (efilinux): Fix indentation of source code.
 2019-02-04 00:16:47 +01:00
Danny Milosavljevic 6adfcbeab1
gnu: fc-host-tools: Update to 9a. 
* gnu/packages/embedded.scm (fc-host-tools)[source]: Update to 9a.
[arguments]<#:phases>[patch-installation-paths]: Modify.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic bb4a8f4851
gnu: Add efilinux. 
* gnu/packages/efi.scm (efilinux): New variable.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic 527aab6f18
gnu: Add efitools. 
* gnu/packages/efi.scm (efitools): New variable.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic 3da49652ad
gnu: Add sbsigntools. 
* gnu/packages/efi.scm (sbsigntools): New variable.
 2019-02-04 00:14:18 +01:00
Danny Milosavljevic f8ff37d6c0
gnu: Add gnu-efi. 
* gnu/packages/efi.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-02-04 00:14:16 +01:00
Ludovic Courtès 765a5bf167
self: Ensure the daemon refers to the right 'guix' command. 
Previously it would refer to
/var/guix/profiles/per-user/root/current-guix/bin/guix, which would fail
when that profile does not exist.  This is notably the case when using
'channel-instance->package' as done in commit
7e6d8d366a.

* gnu/packages/package-management.scm (guix-daemon)[arguments]: In
'install phase, honor environment variable 'GUIX'.
* guix/self.scm (whole-package)[wrap]: New procedure.
Use it.
 2019-02-04 00:03:30 +01:00
Ricardo Wurmus 6bb5f88e1d
gnu: Add guile-picture-language. 
* gnu/packages/guile-xyz.scm (guile-picture-language): New variable.
 2019-02-03 01:37:38 +01:00
Nicolas Goaziou 7f055a0a37
Update copyright header. 2019-02-02 22:54:12 +01:00
Nicolas Goaziou d90fd183bd
gnu: giac-xcas: Update to 1.5.0-37. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-37.
 2019-02-02 22:52:05 +01:00
Marius Bakke 8576505422
gnu: libreoffice: Fix FTBFS with Boost 1.69.0. 
* gnu/packages/patches/libreoffice-boost.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
 2019-02-02 20:10:18 +01:00
Kei Kebreau ba259bad59
gnu: milkytracker: Add LHA decompression support. 
* gnu/packages/music.scm (milkytracker)[inputs]: Add lhasa.
 2019-02-02 09:22:17 -05:00
Nicolas Goaziou 8f4d15f1ff
Update some copyright headers 2019-02-02 13:41:46 +01:00
Nicolas Goaziou 5fc843cc63
gnu: wireshark: Update to 2.6.6. 
* gnu/packages/networking.scm (wireshark): Update to 2.6.6.
 2019-02-02 13:39:58 +01:00
Clément Lassieur b2cb16133f
gnu: Fix syntax error in emacs-xyz.scm. 
* gnu/packages/emacs-xyz.scm (emacs-repo): Add missing parentheses and
license.
 2019-02-02 12:55:13 +01:00
Mathieu Othacehe 7106671088
gnu: Add emacs-google-c-style. 
* gnu/packages/emacs-xyz.scm (emacs-google-c-style): New variable.
 2019-02-02 11:42:11 +01:00
Mathieu Othacehe bdccd7e101
gnu: Add emacs-alect-themes. 
* gnu/packages/emacs-xyz.scm (emacs-alect-themes): New variable.
 2019-02-02 11:42:11 +01:00
Nicolas Goaziou c14b3a8d7b
gnu: silkaj: Update to 0.6.5. 
* gnu/packages/finance.scm (silkaj): Update to 0.6.5.
[inputs]: Add python-click, python-dunitpery.  Remove python-pyaes,
python-scrypt, and python-commandlines.
 2019-02-02 11:38:28 +01:00
Nicolas Goaziou 352033f31b
gnu: python-duniterpy: Update to 0.52.0. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.52.0.
[propagated-inputs]: Add python-pyaes.
 2019-02-02 11:29:50 +01:00
Clément Lassieur 57b663fa8f
gnu: Add emacs-repo. 
* gnu/packages/emacs-xyz.scm (emacs-repo): New variable.
 2019-02-02 11:14:39 +01:00
Clément Lassieur ba25ba903d
gnu: Add emacs-dtrt-indent. 
* gnu/packages/emacs-xyz.scm (emacs-dtrt-indent): New variable.
 2019-02-02 11:14:39 +01:00
Arun Isaac 43af5f9d19
gnu: Add emacs-mkmcc-gnuplot-mode. 
* gnu/packages/emacs-xyz.scm (emacs-mkmcc-gnuplot-mode): New variable.
 2019-02-02 00:31:21 +05:30
Tobias Geerinckx-Rice 389ae5181e
gnu: znc: Update to 1.7.2. 
* gnu/packages/messaging.scm (znc): Update to 1.7.2.
 2019-02-01 17:39:51 +01:00
Leo Famulari 39ea311cbe
gnu: direnv: Update to 2.15.2. 
* gnu/packages/shellutils.scm (direnv): Update to 2.15.2.
[inputs]: Use the default Go compiler. Add go-github-com-burntsushi-toml
and go-github-com-direnv-go-dotenv.
[arguments]: Add a 'setup-go-environment' phase.
 2019-02-01 17:21:13 +01:00
Leo Famulari bc58bb9bdf
gnu: Add go-github-com-direnv-go-dotenv. 
* gnu/packages/golang.scm (go-github-com-direnv-go-dotenv): New variable.
 2019-02-01 17:21:10 +01:00
Pierre Neidhardt c4e4b85397
gnu: emacs-slime: Update to 2.23. 
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.23.
 2019-02-01 17:13:17 +01:00
Leo Famulari 5d5e45850a
gnu: certbot, python-acme: Update to 0.30.2. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.30.2.
 2019-02-01 16:49:44 +01:00
Mark H Weaver 85ca23caba
gnu: linux-libre: Update to 4.20.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.6.
(%linux-libre-hash): Update hash.
 2019-01-31 23:59:06 -05:00
Mark H Weaver 65466a2b10
gnu: linux-libre@4.19: Update to 4.19.19. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.19.
(%linux-libre-4.19-hash): Update hash.
 2019-01-31 23:57:57 -05:00
Mark H Weaver 9d5414f1a4
gnu: linux-libre@4.14: Update to 4.14.97. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.97.
(%linux-libre-4.14-hash): Update hash.
 2019-01-31 23:57:06 -05:00
Mark H Weaver 20d32ac279
gnu: linux-libre@4.9: Update to 4.9.154. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.154.
 2019-01-31 23:56:15 -05:00
Eric Bavier 4b444fc5a5
gnu: imb: Update to 2019.1. 
* gnu/packages/benchmark.scm (imb)[source]: Update to 2019.1.  Use
git-download.
[arguments]: Adjust build and install phases for new source organization.  Let
the standard 'install-license-files' phase do its thing.
 2019-01-31 22:12:56 -06:00
Eric Bavier 56d447ba16
gnu: r-rmpi: Setup MPI for tests. 
* gnu/packages/cran.scm (r-rmpi)[arguments]: Add 'mpi-setup phase.
 2019-01-31 22:12:56 -06:00
Eric Bavier eb6785cfe7
gnu: fftw-openmpi: Setup MPI for tests. 
* gnu/packages/algebra.scm (fftw-openmpi)[arguments]: Add 'mpi-setup phase.
 2019-01-31 22:12:56 -06:00
Marius Bakke 0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Yoshinori Arai ff75441fcf
gnu: Add xclock. 
* gnu/packages/xorg.scm (xclock): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-01-31 22:34:23 +01:00
Gabriel Hondet 07c82daad4
gnu: Add python-isrcsubmit. 
* gnu/packages/music.scm (python-isrcsubmit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-01-31 22:01:43 +01:00
Gabriel Hondet 1331a6c07a
gnu: Add python-discid. 
* gnu/packages/music.scm (python-discid): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-01-31 22:01:43 +01:00
Marius Bakke 84243592fe
gnu: lookingglass: Download from git. 
* gnu/packages/virtualization.scm (lookingglass)[source]: Change to GIT-FETCH.
 2019-01-31 20:57:22 +01:00
Marius Bakke cb85742fa8
gnu: hwloc: Update to 2.0.3. 
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3.
 2019-01-31 20:57:22 +01:00
Marius Bakke 9dd5084589
gnu: hwloc@1: Update to 1.11.12. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.12.
 2019-01-31 20:57:22 +01:00
Marius Bakke 8f8bc40677
gnu: VTK: Update to 8.2.0. 
* gnu/packages/image-processing.scm (vtk): Update to 8.2.0.
 2019-01-31 20:57:21 +01:00
Marius Bakke f1d4f264a2
gnu: VTK: Use HTTPS URLs. 
* gnu/packages/image-processing.scm (vtk)[source, home-page]: Use HTTPS.
 2019-01-31 20:57:21 +01:00
Marius Bakke 3cf3255796
gnu: whois: Update to 5.4.1. 
* gnu/packages/networking.scm (whois): Update to 5.4.1.
 2019-01-31 20:57:21 +01:00
Marius Bakke 8f22bf9e6d
gnu: json-modern-cxx: Fetch from git. 
* gnu/packages/cpp.scm (json-modern-cxx)[source]: Use GIT-FETCH.
[source](snippet): End on #t.
 2019-01-31 20:57:21 +01:00
Marius Bakke 0a3849f610
gnu: httpd: Update to 2.4.38. 
* gnu/packages/web.scm (httpd): Update to 2.4.38.
 2019-01-31 20:57:21 +01:00
Marius Bakke 71cb7512c4
gnu: libwebp: Update to 1.0.2. 
* gnu/packages/image.scm (libwebp): Update to 1.0.2.
 2019-01-31 20:57:21 +01:00
Marius Bakke 39855bfef1
gnu: p11-kit: Update to 0.23.15. 
* gnu/packages/patches/p11-kit-jks-timestamps.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.15.
[source](patches): New field.
 2019-01-31 20:57:21 +01:00
Marius Bakke 7c56237b4c
gnu: i3-wm: Update to 4.16.1. 
* gnu/packages/wm.scm (i3-wm): Update to 4.16.1.
 2019-01-31 20:57:21 +01:00
Marius Bakke b8c0b9c1a3
gnu: msmtp: Update to 1.8.2. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.2.
 2019-01-31 20:57:21 +01:00
Efraim Flashner 9117d6df87
gnu: tcc: Fix building on armhf-linux. 
* gnu/packages/c.scm (tcc)[arguments]: Add 'configure-flag to set the
triplet when building for armhf-linux.
 2019-01-31 18:39:19 +02:00
Efraim Flashner 0270b24b65
gnu: tcc: Mark aarch64-linux as supported. 
* gnu/packages/c.scm (tcc)[supported-systems]: Remove aarch64.
 2019-01-31 17:47:44 +02:00
Ricardo Wurmus 740a335558
gnu: Remove xboing. 
* gnu/packages/games.scm (xboing): Remove variable.
 2019-01-31 16:29:53 +01:00
Ricardo Wurmus 395a95bb75
gnu: guile-hall: Wrap with guile-config. 
* gnu/packages/guile-xyz.scm (guile-hall)[arguments]: Extend
"hall-wrap-binaries" phase to include guile-config in the load path.
 2019-01-31 16:26:22 +01:00
Andreas Enge adba64662c
gnu: Add python-cypari2 and python2-cypari2. 
* gnu/packages/sagemath.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new module.
 2019-01-31 14:58:47 +01:00
Leo Famulari 11d19ca236
gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778. 
* gnu/packages/patches/qemu-CVE-2018-16872.patch,
gnu/packages/patches/qemu-CVE-2019-6778.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2019-01-31 14:35:48 +01:00
Arun Isaac a382860bd4
gnu: rss-bridge: Update to 2019-01-13. 
* gnu/packages/web.scm (rss-bridge): Update to 2019-01-13.
[source]: Use git-fetch.
[native-inputs]: Remove gzip and tar.
 2019-01-31 16:27:39 +05:30
Rutger Helling e1c3ffcfcd
gnu: scdoc: Update to 1.8.1. 
* gnu/packages/man.scm (scdoc): Update to 1.8.1.
 2019-01-31 10:09:29 +01:00
Nicolas Goaziou 2e484e78cd
gnu: mame: Update to 0.206. 
* gnu/packages/emulators.scm (mame): Update to 0.206.
 2019-01-30 22:59:44 +01:00
Kei Kebreau 0dcea35d9a
gnu: Add lhasa. 
* gnu/packages/compression.scm (lhasa): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-01-30 21:24:01 +01:00
Ricardo Wurmus ba123b6dda
gnu: star: Update to 2.7.0a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0a.
 2019-01-30 15:44:47 +01:00
Mark H Weaver 24886c1389
gnu: icecat: Update to 60.5.0-guix1 [security-fixes]. 
Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505.

* gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1.
[version]: Use %icecat-version.
[source]: Inherit from 'icecat-source'.  Remove obsolete patches.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch,
gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch,
gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
 2019-01-29 22:29:42 -05:00
Mark H Weaver 948879eeda
gnu: icecat: Add icecat-source. 
* gnu/packages/gnuzilla.scm (computed-origin-method): New variable.
(%icecat-version, icecat-source): New variables.
* gnu/packages/patches/icecat-makeicecat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-29 22:29:40 -05:00
Ludovic Courtès 286bea0dba
gnu: clang-runtime@3.5: Fix compilation on glibc 2.28. 
Reported by zimoun <zimon.toutoune@gmail.com>.

* gnu/packages/llvm.scm (clang-runtime-3.5): Add
"clang-3.5-libsanitizer-ustat-fix.patch".
 2019-01-29 23:46:33 +01:00
Ludovic Courtès b552e307ed
gnu: guile-commonmark: Update to 0.1.2. 
* gnu/packages/guile-xyz.scm (guile-commonmark): Update to 0.1.2.
[source](modules, snippet): Remove.
 2019-01-29 23:46:33 +01:00
Ludovic Courtès db9771a9a9
gnu: guile-git: Update to 0.2.0. 
* gnu/packages/guile.scm (guile-git): Update to 0.2.0.
 2019-01-29 23:46:33 +01:00
Leo Famulari f5eb570c59
gnu: Mutt: Update to 1.11.2. 
* gnu/packages/mail.scm (mutt): Update to 1.11.2.
 2019-01-29 15:52:33 -05:00
Ricardo Wurmus 631337063e
gnu: Add texlive-latex-beamer. 
* gnu/packages/tex.scm (texlive-latex-beamer): New variable.
 2019-01-29 17:18:23 +01:00
Ricardo Wurmus 1d4c2dabef
gnu: texlive-latex-seminar: Copy files to output. 
* gnu/packages/tex.scm (texlive-latex-seminar)[build-system]: Use
trivial-build-system.
[arguments]: Copy files to output.
 2019-01-29 14:07:03 +01:00
Mathieu Lirzin 9e532ae22a
gnu: clojure: Update to 1.10.0. 
* gnu/packages/clojure.scm (clojure): Update to 1.10.0.
[source]: Use 'git-fetch'.
 2019-01-29 10:59:06 +01:00
Rutger Helling b412ddcb1a
gnu: kitty: Update to 0.13.3. 
* gnu/packages/terminals.scm (kitty): Update to 0.13.3.
[inputs]: Replace python2-pygments with python-pygments. Add wayland.
[arguments]: Add 'hard-code-libegl phase.
 2019-01-29 10:10:06 +01:00
Efraim Flashner 23c2598233
gnu: x265: Update to 3.0. 
* gnu/packages/video.scm (x265): Update to 3.0.
[source]: Remove patch.
* gnu/packages/patches/x265-detect512-all-arches.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-29 10:07:58 +02:00
Ludovic Courtès db7c901af1
gnu: guix: Update to 4bddd12. 
* gnu/packages/package-management.scm (guix): Update to 4bddd12.
 2019-01-28 23:52:20 +01:00
Gábor Boskovits 95bc85b7da
gnu: Add openjdk 11. 
* gnu/packages/java.scm (openjdk11): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-28 23:15:27 +01:00
Meiyo Peng 4bddd12ad5
gnu: fish: Use fish-foreign-env to source /etc/profile. 
* gnu/packages/shells.scm (fish): Use fish-foreign-env to source /etc/profile
  when user logs in.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Meiyo Peng 1d962fc0a1
gnu: Add fish-foreign-env. 
* gnu/packages/shells.scm (fish-foreign-env): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Meiyo Peng e1dba5bea0
gnu: fish: Update to 3.0.0. 
* gnu/packages/shells.scm (fish): Update to 3.0.0.
  [source]: Remove dead URL.
  [inputs]: Remove bc.  Replace python-wrapper with python.
  [arguments]: Remove configure-flags.  Enable fish to source
  /etc/fish/config.fish.  Enable completions, functions and configurations
  in user's and system's guix profiles.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-28 23:13:41 +01:00
Ludovic Courtès f15800946d
gnu: youtube-dl: Update to 2019.01.27. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.27.
 2019-01-28 23:13:40 +01:00
Ricardo Wurmus 5a23696a47
gnu: fastcap: Fix build and use INVOKE. 
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny
with a texlive-union including texlive-fonts-amsfonts.
[arguments]: Use INVOKE in build phases.
 2019-01-28 20:30:20 +01:00
Ricardo Wurmus ad34338d1e
gnu: scons: Update to 3.0.3. 
Fixes <https://bugs.gnu.org/34236>.

* gnu/packages/python-xyz.scm (scons): Update to 3.0.3.
[arguments]: Add "bootstrap" phase.
 2019-01-28 20:09:51 +01:00
Ricardo Wurmus 1d1e3676ba
gnu: r-genomicfeatures: Update to 1.34.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus ea0eaf537a
gnu: r-variantannotation: Update to 1.28.10. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus df00ca25bc
gnu: r-rmpfr: Update to 0.7-2. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 61cb2e3133
gnu: r-waveslim: Update to 1.7.5.1. 
* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 0207ad9ee8
gnu: r-activity: Update to 1.2. 
* gnu/packages/cran.scm (r-activity): Update to 1.2.
[propagated-inputs]: Remove r-overlap.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 211628044e
gnu: r-emmeans: Update to 1.3.2. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.2.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus 62595ee342
gnu: r-th-data: Update to 1.0-10. 
* gnu/packages/cran.scm (r-th-data): Update to 1.0-10.
 2019-01-28 16:27:35 +01:00
Ricardo Wurmus ddd168ff32
gnu: r-acceptancesampling: Update to 1.0-6. 
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-6.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 7d4b98181a
gnu: r-vioplot: Update to 0.3.0. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.0.
[propagated-inputs]: Add r-zoo.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus b4b1a9440b
gnu: r-jomo: Update to 2.6-6. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-6.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 9e0162df85
gnu: r-fitdistrplus: Update to 1.0-14. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-14.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus fe24aa2a4f
gnu: r-colorspace: Update to 1.4-0. 
* gnu/packages/cran.scm (r-colorspace): Update to 1.4-0.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus b3578189aa
gnu: r-ggmap: Update to 2.6.2. 
* gnu/packages/cran.scm (r-ggmap): Update to 2.6.2.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 48246864b1
gnu: r-ranger: Update to 0.11.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.1.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 56daae7b58
gnu: r-prabclus: Update to 2.2-7. 
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus f308d426fd
gnu: r-gplots: Update to 3.0.1.1. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.1.1.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 69e9899a2f
gnu: r-hmisc: Update to 4.2-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.2-0.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 19fdd77c07
gnu: r-purrr: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.0.
[propagated-inputs]: Remove r-tibble.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus c21c5188f4
gnu: r-e1071: Update to 1.7-0.1. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.1.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 82dad63ef7
gnu: r-rcpparmadillo: Update to 0.9.200.7.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.0.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 6d1db05086
gnu: r-openssl: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.1.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Add r-askpass.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 0550c2bf70
gnu: r-checkmate: Update to 1.9.1. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.1.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus d0fb25d94a
gnu: r-data-table: Update to 1.12.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.0.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 5d9b140b29
gnu: r-qtl: Update to 1.44-9. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.44-9.
 2019-01-28 16:27:34 +01:00
Ricardo Wurmus 439d821a3b
gnu: r-optparse: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.6.1.
 2019-01-28 16:27:33 +01:00
Ricardo Wurmus 9d3a467214
gnu: Add r-askpass. 
* gnu/packages/cran.scm (r-askpass): New variable.
 2019-01-28 16:27:33 +01:00
Ricardo Wurmus 2b106a8d71
gnu: Add r-sys. 
* gnu/packages/cran.scm (r-sys): New variable.
 2019-01-28 16:27:33 +01:00
Ludovic Courtès 7d2be1277b
packages: 'package-input-rewriting' can take a promise. 
* guix/packages.scm (package-input-rewriting): Allow REPLACEMENTS to be
a promise.
* gnu/packages/guile.scm (package-for-guile-2.0): Delay the first
argument to 'package-input-rewriting'.
 2019-01-28 15:45:48 +01:00
Ludovic Courtès 10b507b234
gnu: Remove now unused 'package-for-guile-2.2' procedure. 
* gnu/packages/guile.scm (package-for-guile-2.2): Remove.
 2019-01-28 15:45:48 +01:00
Ricardo Wurmus 40864d79fc
gnu: mumi: Update to 0.0.0-3.ea5a738. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-3.ea5a738.
 2019-01-28 15:27:16 +01:00
swedebugia cd81199cbd
gnu: artanis: Update to 0.3.1. 
* gnu/packages/guile-xyz.scm (artanis): Update to 0.3.1.
[snippet]: Remove bundled guile-redis.
[inputs]: Add guile-redis.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-01-28 15:19:46 +01:00
Ricardo Wurmus 0791437f97
gnu: Move most packages from guile.scm to new module. 
* gnu/packages/guile.scm (artanis, guildhall, guile-aspell, guile-bash,
guile-8sync, guile-daemon, guile-dsv, guile-fibers, guile-syntax-highlight,
guile-sjson, guile-colorized, guile-pfds, guile-aa-tree, guile-simple-zmq,
jupyter-guile-kernel, guile-sparql, guile-debbugs, guile-email,
guile-debbugs-next, guile-newt, guile-mastodon, guile-parted, guile-xosd,
guile-dbi, guile-dbd-sqlite3, guile-config, guile-hall, guile-ics, guile-wisp,
guile-sly, g-wrap, guile-miniadapton, guile-reader, guile2.2-reader,
guile-ncurses, guile-ncurses/gpm, guile-lib, guile2.0-lib, guile2.2-lib,
guile-minikanren, guile2.0-minikanren, guile2.2-minikanren, guile-irregex,
guile2.0-irregex, guile2.2-irregex, haunt, guile2.0-haunt, guile2.2-haunt,
guile-redis, guile2.0-redis, guile2.2-redis, guile-commonmark,
guile2.0-commonmark, guile2.2-commonmark, mcron, mcron2): Move these variables
from here...
* gnu/packages/guile-xyz.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/installer.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/ci.scm,
gnu/packages/gtk.scm,
gnu/packages/guile.scm,
gnu/packages/mail.scm,
gnu/packages/package-management.scm,
gnu/packages/skribilo.scm,
gnu/packages/web.scm,
gnu/services/mcron.scm: Update module references.
 2019-01-28 14:57:10 +01:00
Ricardo Wurmus 415ae33073
gnu: python-discover: Use PYPI-URI. 
* gnu/packages/check.scm (python-discover)[source]: Use PYPI-URI.
 2019-01-28 13:41:38 +01:00
Ricardo Wurmus cb539b7c12
gnu: python-testlib: Use PYPI-URI. 
* gnu/packages/check.scm (python-testlib)[source]: Use PYPI-URI.
 2019-01-28 13:41:06 +01:00
Ricardo Wurmus 9fcedf0792
gnu: python-testrepository-bootstrap: Use PYPI-URI. 
* gnu/packages/check.scm (python-testrepository-bootstrap)[source]: Use
PYPI-URI.
 2019-01-28 13:40:16 +01:00
Ricardo Wurmus 6571bba06b
gnu: python2-jsonrpclib: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python2-jsonrpclib)[source]: Use PYPI-URI.
 2019-01-28 12:24:26 +01:00
Ricardo Wurmus 0ca1d040d7
gnu: python-pykafka: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-pykafka)[source]: Use PYPI-URI.
 2019-01-28 12:24:26 +01:00
Ricardo Wurmus b0758fbb66
gnu: python-configobj: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-configobj)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 9f1f22ee70
gnu: python-pretend: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-pretend)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 337c3a1e6c
gnu: python-prettytable: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-prettytable)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 8c4dffb50e
gnu: python-pyflakes-0.8.1: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-pyflakes-0.8.1)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus f3576970e5
gnu: python-pep8-1.5.7: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-pep8-1.5.7)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus c9671d4bb2
gnu: python-ipython-genutils: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-ipython-genutils)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 6c8c3980a9
gnu: python-simplegeneric: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-simplegeneric)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 5182927c44
gnu: python-markupsafe: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-markupsafe)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 786ccb87f0
gnu: python-jsonschema: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-jsonschema)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 89bf667caf
gnu: python-mimeparse: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-mimeparse)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 1cc184e6eb
gnu: python2-mechanize: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python2-mechanize)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 8318bf0740
gnu: python-lockfile: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python-lockfile)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 2c1f0d09c2
gnu: python2-backport-ssl-match-hostname: Use PYPI-URI. 
* gnu/packages/python-xyz.scm (python2-backport-ssl-match-hostname)[source]:
Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus fc283a5e0a
gnu: python-zope-security: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-security)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 6e6bbc0274
gnu: python-zope-location: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-location)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus 510cacc7ea
gnu: python-zope-proxy: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-proxy)[source]: Use PYPI-URI.
 2019-01-28 12:24:25 +01:00
Ricardo Wurmus cdf14a6745
gnu: python-zope-configuration: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-configuration)[source]: Use
PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus ab9e1740bb
gnu: python-zope-schema: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-schema)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus 8a84d796b0
gnu: python-zope-i18nmessageid: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-i18nmessageid)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus d409c993a0
gnu: python-zope-testrunner: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-testrunner)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus 3d010466e6
gnu: python-zope-exceptions: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-exceptions)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus ba93e239eb
gnu: python-zope-interface: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-interface)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus da501c49f3
gnu: python-zope-event: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-zope-event)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Ricardo Wurmus 2b22186679
gnu: python-wsgi-intercept: Use PYPI-URI. 
* gnu/packages/python-web.scm (python-wsgi-intercept)[source]: Use PYPI-URI.
 2019-01-28 12:24:24 +01:00
Pierre Neidhardt 562d13e16a
gnu: Add xf86-video-amdgpu. 
* gnu/packages/xorg.scm (xf86-video-amdgpu): New variable.
 2019-01-28 11:08:24 +01:00
Björn Höfling 818f317a4d
gnu: Krita: Update to 4.1.7.101. 
* gnu/packages/kde.scm (krita): Update to 4.1.7.101.
 2019-01-28 09:43:53 +01:00
Rutger Helling 6ea1c6fc31
gnu: mgba: Update to 0.7.0. 
* gnu/packages/emulators.scm (mgba): Update to 0.7.0.
[source]: Use git-fetch.
[arguments]: Remove "-DCMAKE_INSTALL_LIBDIR" configuration flag.
 2019-01-28 09:17:39 +01:00
Ricardo Wurmus 86228e569b
gnu: python-ecdsa: Use PYPI-URI. 
* gnu/packages/python-crypto.scm (python-ecdsa)[source]: Use PYPI-URI.
 2019-01-27 22:39:24 +01:00
Ricardo Wurmus 27864e7c6c
gnu: python-py-bcrypt: Use PYPI-URI. 
* gnu/packages/python-crypto.scm (python-py-bcrypt)[source]: Use PYPI-URI.
 2019-01-27 22:39:24 +01:00
Ricardo Wurmus 6feb86f442
gnu: grantlee: Fetch sources via git. 
* gnu/packages/qt.scm (grantlee)[source]: Fetch via git.
 2019-01-27 22:39:24 +01:00
Efraim Flashner 4f8be6d905
gnu: python-flask-restful: Update to 0.3.7. 
* gnu/packages/python-web.scm (python-flask-restful): Update to 0.3.7.
 2019-01-27 14:41:04 +02:00
Efraim Flashner 2066975041
gnu: python-cryptography, python-cryptography-vectors: Update to 2.5. 
* gnu/packages/python-crypto.scm (python-cryptography,
python-cryptography-vectors): Update to 2.5.
 2019-01-27 12:48:41 +02:00
Efraim Flashner 92d9104d9c
gnu: python-bcrypt: Update to 3.1.6. 
* gnu/packages/python-crypto.scm (python-bcrypt): Update to 3.1.6.
 2019-01-27 12:48:41 +02:00
Efraim Flashner 20c5e2f4ef
gnu: python-urllib3: Update to 1.24.1. 
* gnu/packages/python-web.scm (python-urllib3): Update to 1.24.1.
[native-inputs]: Remove python-nose, add python-pytest.
[propagated-inputs]: Add python-pysocks.
[home-page]: Update home-page url.
 2019-01-27 12:48:41 +02:00
Efraim Flashner eba8a00d84
gnu: python-flaky: Update to 3.5.3. 
* gnu/packages/check.scm (python-flaky): Update to 3.5.3.
 2019-01-27 12:48:41 +02:00
Efraim Flashner 3fcaf42a1c
gnu: python-tornado: Update to 5.1.1. 
* gnu/packages/python-web.scm (python-tornado): Update to 5.1.1.
[propagated-inputs]: Move python-backports-abc to python2-tornado only.
[home-page]: Use https.
 2019-01-27 12:48:40 +02:00
Efraim Flashner 474039554d
gnu: python-flask: Run test suite. 
* gnu/packages/python-web.scm (python-flask)[arguments]: Use custom
'check phase.
[native-inputs]: Add python-pytest.
 2019-01-27 12:48:40 +02:00
Efraim Flashner 67eda45bbb
gnu: python-flask: Update to 1.0.2. 
* gnu/pacakges/python-web.scm (python-flask): Update to 1.0.2.
[home-page]: Update to new home-page.
 2019-01-27 12:48:40 +02:00
Efraim Flashner c5e110ce95
gnu: python-werkzeug: Update to 0.14.1. 
* gnu/packages/python-web.scm (python-werkzeug): Update to 0.14.1.
[arguments]: Run tests after 'install phase. Use custom 'check phase.
[propagated-inputs]: Add python-requests.
[home-page]: Update to new home-page.
 2019-01-27 12:48:40 +02:00
Efraim Flashner 8d7e7ca6a1
gnu: python-click: Enable tests. 
* gnu/packages/python-xyz.scm (python-click)[arguments]: Enable tests.
Add custom 'check phase.
 2019-01-27 12:48:39 +02:00
Efraim Flashner 619848558e
gnu: python-click: Update to 7.0. 
* gnu/packages/python-xyz.scm (python-click): Update to 7.0.
[home-page]: Update to new home-page.
 2019-01-27 12:48:39 +02:00
Efraim Flashner acfcf2ed64
gnu: python-itsdangerous: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-itsdangerous): Update to 1.1.0.
[source]: Use pypi uri.
[home-page]: Update to new home-page.
 2019-01-27 12:48:39 +02:00
Efraim Flashner a7f1b7188d
gnu: python-entrypoints: Update to 0.3. 
* gnu/packages/python-xyz.scm (python-entrypoints): Update to 0.3.
[source]: Use pypi uri.
 2019-01-27 12:48:36 +02:00
Mark H Weaver 9f92038029
gnu: linux-libre: Update to 4.20.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.5.
(%linux-libre-hash): Update hash.
 2019-01-27 02:02:24 -05:00
Mark H Weaver 0ee0ea706f
gnu: linux-libre@4.19: Update to 4.19.18. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.18.
(%linux-libre-4.19-hash): Update hash.
 2019-01-27 02:01:35 -05:00
Mark H Weaver 94711cd6db
gnu: linux-libre@4.14: Update to 4.14.96. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.96.
(%linux-libre-4.14-hash): Update hash.
 2019-01-27 02:00:34 -05:00
Mark H Weaver f5e592759a
gnu: linux-libre@4.9: Update to 4.9.153. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.153.
 2019-01-27 01:59:45 -05:00
Mark H Weaver 12e97f3640
gnu: linux-libre@4.4: Update to 4.4.172. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.172.
 2019-01-27 01:58:58 -05:00
Maxim Cournoyer 78f609165d
gnu: supercollider: Update to 3.10.1. 
* gnu/packages/audio.scm (supercollider): Update to 3.10.1.
 2019-01-26 23:48:21 -05:00
Eric Bavier c2ab3b8439
gnu: Add stoken. 
* gnu/packages/crypto.scm (stoken): New variable.
 2019-01-26 17:40:17 -06:00
Ludovic Courtès df09e1d6e7
gnu: telepathy-glib: Build sequentially. 
* gnu/packages/glib.scm (telepathy-glib)[arguments]: Pass
 #:parallel-build? #f.
 2019-01-27 00:18:46 +01:00
Efraim Flashner 770b1d65b1
gnu: python-keyring: Enable tests. 
* gnu/packages/python-crypto.scm (python-keyring)[arguments]: Enable
tests.
[native-inputs]: Add python-pytest, python-pytest-runner.
 2019-01-27 00:06:11 +02:00
Ricardo Wurmus 8924e3fd9a
gnu: guile-for-guile-emacs: Remove redundant build phases. 
* gnu/packages/guile.scm (guile-for-guile-emacs)[arguments]: Remove build
phases "autogen" and "patch-/bin/sh".
 2019-01-26 22:39:16 +01:00
Ricardo Wurmus 4aa266a0c6
gnu: stress-make: Use INVOKE. 
* gnu/packages/debug.scm (stress-make)[arguments]: Use INVOKE.
 2019-01-26 22:34:04 +01:00
Ricardo Wurmus 75ac5e20bc
gnu: american-fuzzy-lop: Unconditionally return #T from build phases. 
* gnu/packages/debug.scm (american-fuzzy-lop)[arguments]: Use INVOKE and
unconditionally return #T from build phases.
 2019-01-26 22:32:44 +01:00
Ricardo Wurmus e5855e6f6b
gnu: guile-ncurses: Unconditionally return #T from build phases. 
* gnu/packages/guile.scm (guile-ncurses)[arguments]: Use INVOKE.
 2019-01-26 22:22:30 +01:00
Ricardo Wurmus d59a8ac629
gnu: crawl: Use INVOKE. 
* gnu/packages/games.scm (crawl)[arguments]: Use INVOKE in "check" phase.
 2019-01-26 22:04:08 +01:00
Ricardo Wurmus f08d34a007
gnu: fillets-ng: Use INVOKE. 
* gnu/packages/games.scm (fillets-ng)[arguments]: Use INVOKE in "install-data"
phase.
 2019-01-26 22:01:38 +01:00
Ricardo Wurmus ff61aee8f7
gnu: kiki: Use INVOKE. 
* gnu/packages/games.scm (kiki)[arguments]: Use INVOKE.
 2019-01-26 21:58:59 +01:00
Ricardo Wurmus 369a91d931
gnu: openttd-engine: Use INVOKE. 
* gnu/packages/games.scm (openttd-engine)[arguments]: Use INVOKE in configure
phase.
 2019-01-26 21:57:38 +01:00
Ricardo Wurmus db2badeb91
gnu: emacs-ivy: Update to 0.11.0. 
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.11.0.
 2019-01-26 21:54:58 +01:00
Efraim Flashner 296c84847f
gnu: stepmania: Fix build flags non-Intel machines. 
* gnu/packages/games.scm (stepmania)[arguments]: Add a configure-flag on
non-Intel machines to disable SSE2 optimizations.
 2019-01-26 20:54:53 +02:00
Kei Kebreau fc9c47bd7c
gnu: maxima: Patch hardcoded paths. 
* gnu/packages/maths.scm: (maxima): Patch hardcoded paths.
[arguments]: Add the phase 'patch-paths' to replace references to sed,
dirname, and head with direct references to the store.
[inputs]: Add sed.
 2019-01-26 11:04:23 -05:00
Ricardo Wurmus 48dbb1bf2b
gnu: xboing: Use INVOKE. 
* gnu/packages/games.scm (xboing)[arguments]: Use INVOKE in build phases.  Do
not replace "install" phase; add new "install-man-pages" phase instead.
 2019-01-26 16:33:27 +01:00
Ricardo Wurmus a4aca0b88c
gnu: cmatrix: Use INVOKE. 
* gnu/packages/games.scm (cmatrix)[arguments]: Use INVOKE.
 2019-01-26 14:58:02 +01:00
Ricardo Wurmus 482bdf2522
gnu: cowsay: Use INVOKE. 
* gnu/packages/games.scm (cowsay)[arguments]: Use INVOKE in build phases.
 2019-01-26 14:57:29 +01:00
Ricardo Wurmus 4665d8c943
gnu: python-django: Use INVOKE. 
* gnu/packages/django.scm (python-django)[arguments]: Use INVOKE.
 2019-01-26 14:56:42 +01:00
Ricardo Wurmus 7f46dcc49c
gnu: ding: Use INVOKE. 
* gnu/packages/dictionaries.scm (ding)[arguments]: Use INVOKE.
 2019-01-26 14:47:48 +01:00
Ricardo Wurmus c9e7515970
gnu: uthash: Use INVOKE. 
* gnu/packages/datastructures.scm (uthash)[arguments]: Use INVOKE.
 2019-01-26 14:46:40 +01:00
Ricardo Wurmus d1293d426d
gnu: uthash: Fetch sources via git. 
* gnu/packages/datastructures.scm (uthash)[source]: Fetch source code via git.
 2019-01-26 14:46:05 +01:00
Ricardo Wurmus 8f43bdd9fb
gnu: make-u-boot-package: Use INVOKE. 
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Use INVOKE in
"configure" phase.
 2019-01-26 14:44:32 +01:00
Ricardo Wurmus 92b344dd05
gnu: libksysguard: Use INVOKE. 
* gnu/packages/kde.scm (libksysguard)[arguments]: Use INVOKE in "check" phase.
 2019-01-26 14:42:06 +01:00
Ricardo Wurmus f3b9a85829
gnu: kdelibs4support: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (kdelibs4support)[arguments]: Use INVOKE in
"check" phase.
 2019-01-26 14:38:28 +01:00
Ricardo Wurmus 0071676a09
gnu: baloo: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (baloo)[arguments]: Use INVOKE in "check"
phase.
 2019-01-26 14:28:36 +01:00
Ricardo Wurmus 43bb3ac47a
gnu: knotifications: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (knotifications)[arguments]: Use INVOKE in
"check" phase.
 2019-01-26 13:18:53 +01:00
Ricardo Wurmus 9f5fd3015b
gnu: kauth: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (kauth)[arguments]: Use INVOKE in "check"
phase.
 2019-01-26 13:18:19 +01:00
Ricardo Wurmus 93a1a3c544
gnu: solid: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (solid)[arguments]: Use INVOKE in "check"
phase.
 2019-01-26 13:17:48 +01:00
Ricardo Wurmus 76cf631463
gnu: networkmanager-qt: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (networkmanager-qt)[arguments]: Use INVOKE
in "check" phase.
 2019-01-26 13:11:07 +01:00
Ricardo Wurmus e7ea534d55
gnu: modemmanager-qt: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (modemmanager-qt)[arguments]: Use INVOKE in
"check" phase.
 2019-01-26 13:10:29 +01:00
Ricardo Wurmus 29afd8d96c
gnu: kdbusaddons: Use INVOKE. 
* gnu/packages/kde-frameworks.scm (kdbusaddons)[arguments]: Use INVOKE in
check phase.
 2019-01-26 13:05:09 +01:00
Ricardo Wurmus 19d8f047c4
gnu: kcoreaddons: Disable broken test. 
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Disable
benchNotifyWatcher test because it installs too many inotify watches and fails
with ENOSPC.
 2019-01-26 12:13:37 +01:00
Leo Famulari c6bc0fc3a5
gnu: Go: Update to 1.11.5 [fixes CVE-2019-6486]. 
* gnu/packages/golang.scm (go-1.11): Update to 1.11.5.
[arguments]: Add a 'tarbomb-workaround' phase and adapt the 'chdir' phase for
the tarbomb.
 2019-01-25 19:24:59 -05:00
Nicolas Goaziou 8204ec8dbe
gnu: musescore: Update to 3.0.1. 
* gnu/packages/music.scm (musescore): Update to 3.0.1.
 2019-01-26 00:51:56 +01:00
Ludovic Courtès 008883561f
gnu: guix: Remove 'guix-devel' variable. 
* gnu/packages/package-management.scm (guix-devel): Remove.
 2019-01-26 00:06:55 +01:00
Ricardo Wurmus fdb0b40b0e
gnu: pepr: Use PYPI-URI. 
* gnu/packages/bioinformatics.scm (pepr)[source]: Use PYPI-URI.
 2019-01-25 23:27:25 +01:00
Ricardo Wurmus 4cd7c58cf1
gnu: python2-warpedlmm: Use PYPI-URI. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[source]: Use PYPI-URI.
 2019-01-25 23:26:50 +01:00
Ricardo Wurmus 99d1744611
gnu: attic: Use PYPI-URI. 
* gnu/packages/backup.scm (attic)[source]: Use PYPI-URI.
 2019-01-25 23:21:20 +01:00
Ricardo Wurmus 4267aa75a3
gnu: graphios: Use PYPI-URI. 
* gnu/packages/admin.scm (graphios)[source]: Use PYPI-URI.
 2019-01-25 23:20:17 +01:00
Ricardo Wurmus aeec4a8fc1
gnu: python-sqlalchemy: Use PYPI-URI. 
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
 2019-01-25 23:18:55 +01:00
Ricardo Wurmus 7d4dae6a8d
gnu: python-pyaudio: Use PYPI-URI. 
* gnu/packages/audio.scm (python-pyaudio)[source]: Use PYPI-URI.
 2019-01-25 23:17:39 +01:00
Ricardo Wurmus 723f332551
gnu: femtolisp: Use INVOKE. 
* gnu/packages/scheme.scm (femtolisp)[arguments]: Remove "bootstrap" phase;
use INVOKE and return #T unconditionally.
 2019-01-25 23:11:21 +01:00
Christopher Baines dd7bc92afc
gnu: linkchecker: Fix most test failures. 
Add a patch to skip more tests that require the network. Along with some other
changes, this gets all but of one of the tests passing.

The remaining test is broken due to a problem with the Python package in Guix,
which is fixed by [1] which is currently on the core-updates branch. This
patch doesn't work on core-updates due to python2-miniboa not being present.

1: d453b0e11d

* gnu/packages/python.scm (linkchecker)[source]: Add patch.
[native-inputs]: Add more inputs required for the tests.
[arguments]: Enable the tests, move the 'check phase after 'install. Test
using the installed software, and use py.test.
 2019-01-25 22:00:05 +00:00
Eric Bavier 7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests. 
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
 2019-01-25 13:10:05 -06:00
Eric Bavier 6161141e91
superlu-dist: Upgrade to 6.1.0. 
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0.  Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]:   Replace pt-scotch with pt-scotch32 to match integer
sizes.  Add "parmetis" input, from pt-scotch32.  Move lapack to ...
[inputs]: ...here.  Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags.  Add
'set-c++-standard' and 'omp-setup' phases.  Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2019-01-25 13:10:05 -06:00
Eric Bavier fd3733432b
scotch: Upgrade to 6.0.6. 
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase.  Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-01-25 13:10:05 -06:00
Eric Bavier a6b9ebc2fc
gnu: Add Combinatorial BLAS. 
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
 2019-01-25 13:09:47 -06:00
Nicolas Goaziou 1faf0a0459
gnu: Add stepmania. 
* gnu/packages/games.scm (stepmania):
* gnu/packages/video.scm (ffmpeg-for-stepmania): New variables.
 2019-01-25 18:08:21 +01:00
Ricardo Wurmus a64676e088
Merge branch 'master' into staging 2019-01-25 15:40:25 +01:00
Ricardo Wurmus 81cf0174b5
gnu: kcoreaddons: Fix broken test. 
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Add build phase
"fix-broken-test".
 2019-01-25 15:37:23 +01:00
Ricardo Wurmus fd007bebdd
gnu: infiniband-diags: Remove custom bootstrap phase. 
* gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Remove
"autotools" phase.
 2019-01-25 15:20:53 +01:00
Ricardo Wurmus 02d38bd3a2
Merge branch 'master' into staging 2019-01-25 15:20:25 +01:00
Ricardo Wurmus 776248419f
gnu: gpgme: Update to 1.12.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.12.0.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 1d7b8a2452
gnu: gpgme: Add patch to fix qgpgme tests. 
* gnu/packages/gnupg.scm (gpgme)[source]: Add upstream patch.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus a8416e6951
gnu: pcb-rnd: Use INVOKE. 
* gnu/packages/engineering.scm (pcb-rnd)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 5cb9754cf4
gnu: proplib: Use INVOKE. 
* gnu/packages/embedded.scm (proplib)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 78854b3849
gnu: jimtcl: Use INVOKE. 
* gnu/packages/embedded.scm (jimtcl)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 3af2708881
gnu: greenisland: Use INVOKE. 
* gnu/packages/display-managers.scm (greenisland)[arguments]: Use INVOKE in
check phase.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus 3692cffed4
gnu: assword: Use INVOKE. 
* gnu/packages/password-utils.scm (assword)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus c9a65d5c37
gnu: python-oslosphinx: Use INVOKE. 
* gnu/packages/openstack.scm (python-oslosphinx)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus c8780a1038
gnu: python-reno: Use INVOKE. 
* gnu/packages/openstack.scm (python-reno)[arguments]: Use INVOKE.
[native-inputs]: Replace "git" with "git-minimal".
 2019-01-25 15:17:47 +01:00
Gabriel Hondet 4ad7d037ad
gnu: Add ghc-libmpd. 
* gnu/packages/haskell.scm (ghc-libmpd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-25 14:06:38 +01:00
Ricardo Wurmus c6e33df90f
gnu: python-pyopenssl: Update to 19.0.0. 
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 19.0.0.
[arguments]: Use INVOKE.
 2019-01-25 14:02:04 +01:00
Ricardo Wurmus 39df4d1992
gnu: python2-pyqt-4: Use INVOKE. 
* gnu/packages/qt.scm (python2-pyqt-4)[arguments]: Use INVOKE.
 2019-01-25 13:59:53 +01:00
Ricardo Wurmus 41173df9f8
gnu: qwt: Use INVOKE. 
* gnu/packages/qt.scm (qwt)[arguments]: Use INVOKE.
 2019-01-25 13:53:04 +01:00
Ricardo Wurmus 5b8484635f
gnu: ldb: Use INVOKE. 
* gnu/packages/samba.scm (ldb)[arguments]: Use INVOKE.
 2019-01-25 13:44:13 +01:00
Ricardo Wurmus ed0d6ed9a6
gnu: tevent: Use INVOKE. 
* gnu/packages/samba.scm (tevent)[arguments]: Use INVOKE.
 2019-01-25 13:42:58 +01:00
Ricardo Wurmus d83c52c6bb
gnu: talloc/static: Use INVOKE. 
* gnu/packages/samba.scm (talloc/static)[arguments]: Use INVOKE in the build
phase.
 2019-01-25 13:39:12 +01:00
Ricardo Wurmus ed5900890e
gnu: tre: Use INVOKE. 
* gnu/packages/regex.scm (tre)[arguments]: Use INVOKE.
 2019-01-25 13:37:36 +01:00
Ricardo Wurmus 4255818d1c
gnu: python-rdflib: Use PYPI-URI. 
* gnu/packages/rdf.scm (python-rdflib)[source]: Use PYPI-URI.
[arguments]: Use INVOKE in commented build phase.
 2019-01-25 13:36:14 +01:00
Ricardo Wurmus 48b11025b7
gnu: ocaml-utop: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-utop)[arguments]: Use INVOKE.
 2019-01-25 13:32:41 +01:00
Ricardo Wurmus c6aaa7bed6
gnu: ocaml-zed: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-zed)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:32:04 +01:00
Ricardo Wurmus 04daa1ed72
gnu: ocaml-zarith: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-zarith)[arguments]: Use INVOKE.
 2019-01-25 13:31:29 +01:00
Ricardo Wurmus 2c0234e78e
gnu: camlp4-4.02: Use INVOKE. 
* gnu/packages/ocaml.scm (camlp4-4.02)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:26:24 +01:00
Ricardo Wurmus fa5d6e4c6f
gnu: ocaml-4.01: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-4.01)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:23:27 +01:00
Ricardo Wurmus bb29e855da
gnu: ocaml-4.02: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-4.02)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:22:34 +01:00
Ricardo Wurmus 20fe9728c4
gnu: tomsfastmath: Use INVOKE. 
* gnu/packages/multiprecision.scm (tomsfastmath)[arguments]: Use INVOKE in
"check" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 6542b2db5d
gnu: freetalk: Remove custom bootstrap phase. 
* gnu/packages/messaging.scm (freetalk)[arguments]: Remove "autogen" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 3fa013af78
gnu: perl-net-psyc: Update to 1.3. 
* gnu/packages/messaging.scm (perl-net-psyc): Update to 1.3.
[native-inputs]: Add unzip.
[arguments]: Use INVOKE in build phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus b11af07a29
gnu: dino: Update to 0.0-4.8e14ac6. 
* gnu/packages/messaging.scm (dino): Update to 0.0-4.8e14ac6.
[arguments]: Use INVOKE in build phases.
[inputs]: Add qrencode; replace sqlite with sqlite-with-column-metadata.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus e6a24cd08b
gnu: bitlbee-discord: Do not run autogen.sh in custom autogen phase. 
* gnu/packages/messaging.scm (bitlbee-discord)[arguments]: Rename "autogen"
phase to "patch-autogen"; don't invoke "autogen.sh" script as it is invoked in
the "bootstrap" phase; return #T from "patch-autogen" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus bea06837a3
gnu: bitlbee: Use INVOKE. 
* gnu/packages/messaging.scm (bitlbee)[arguments]: Use INVOKE.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 7d416066cd
gnu: ccl: Unconditionally return #T from build phases. 
* gnu/packages/lisp.scm (ccl)[arguments]: Use INVOKE and return #T from build
phases.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus 4c523c4535
gnu: python-lirc: Update to 1.2.1-2.c28708b. 
* gnu/packages/lirc.scm (python-lirc, python2-lirc): Update to
1.2.1-2.c28708b.
[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 9a425d68d4
gnu: python-pygpgme: Use INVOKE. 
* gnu/packages/gnupg.scm (python-pygpgme)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus cba8ba8b0d
gnu: brdf-explorer: Unconditionally return #T from build phases. 
* gnu/packages/graphics.scm (brdf-explorer)[arguments]: Use INVOKE and return #T.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus ec7245f0db
gnu: ncftp: Use INVOKE. 
* gnu/packages/ftp.scm (ncftp)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 15dc8ed5f4
gnu: libxdg-basedir: Don't run autogen.sh manually. 
* gnu/packages/freedesktop.scm (libxdg-basedir)[arguments]: Rename "autogen"
phase to "patch-autogen"; remove invocation of "autogen.sh" script as it will
be executed in the "bootstrap" phase.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus fbc70c97c6
gnu: entr: Update to 4.1. 
* gnu/packages/entr.scm (entr): Update to 4.1.
[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 7492af9be7
gnu: coq-interval: Use INVOKE. 
* gnu/packages/coq.scm (coq-interval)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus e09e83880f
gnu: coq-coquelicot: Use INVOKE. 
* gnu/packages/coq.scm (coq-coquelicot)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 1530b17aa1
gnu: imb: Use INVOKE. 
* gnu/packages/benchmark.scm (imb)[arguments]: Use INVOKE.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 843ce5b419
gnu: synergy: Update to 1.10.1. 
* gnu/packages/synergy.scm (synergy): Update to 1.10.1.
[source]: Fetch from git.
[arguments]: Remove "unpack-aux-src", custom "check" phase, custom "install"
phase.
[inputs]: Add avahi and qtbase.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 0ad0eceed4
gnu: antiword: Use INVOKE. 
* gnu/packages/textutils.scm (antiword)[arguments]: Use INVOKE in install phase.
 2019-01-25 13:21:19 +01:00
Ricardo Wurmus 90621eff7c
gnu: uucp: Use INVOKE. 
* gnu/packages/uucp.scm (uucp)[arguments]: Use INVOKE.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus aa0c73e7aa
gnu: wicd: Use INVOKE. 
* gnu/packages/wicd.scm (wicd)[arguments]: Use INVOKE.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus b5e70d921b
gnu: awesome: Use INVOKE. 
* gnu/packages/wm.scm (awesome)[arguments]: Return #T from check phase.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus 215ccb997a
gnu: xfconf: Use INVOKE. 
* gnu/packages/xfce.scm (xfconf)[arguments]: Unconditionally return #T from
check phase.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus 35faa00686
gnu: libnl: Unconditionally return #T from build phases. 
* gnu/packages/linux.scm (libnl)[arguments]: Use INVOKE and unconditionally
return #T from all build phases.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus 492ee4f83b
gnu: coq-mathcomp: Use INVOKE. 
* gnu/packages/coq.scm (coq-mathcomp)[arguments]: Unconditionally return #T
from build phases.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus ace73a93cd
gnu: coq-gappa: Use INVOKE. 
* gnu/packages/coq.scm (coq-gappa)[arguments]: Unconditionally return #T from
build phases by using INVOKE.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus a48d6acc23
gnu: proof-general: Use INVOKE. 
* gnu/packages/coq.scm (proof-general)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:21:18 +01:00
Ricardo Wurmus 8543ccf87b
gnu: eschalot: Use INVOKE. 
* gnu/packages/crypto.scm (eschalot)[arguments]: Unconditionally return #T
from check phase.
 2019-01-25 13:21:18 +01:00
Brett Gilio e60b3e14a1
gnu: ansible: Update to 2.7.6. 
* gnu/packages/admin.scm (ansible): Update to 2.7.6.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2019-01-25 14:09:05 +05:30
Kei Kebreau ea32c94698
gnu: emacspeak: Update to 49.0. 
* gnu/packages/emacs.scm (emacspeak): Update to 49.0.
[arguments]: In the 'install' phase, fix the launch script substitution.
 2019-01-24 23:57:32 -05:00
Ricardo Wurmus 5c1c1716f5
gnu: cmst: Use INVOKE. 
* gnu/packages/connman.scm (cmst)[arguments]: Unconditionally return #T from
build phases.
 2019-01-24 23:10:25 +01:00
Ricardo Wurmus e99b47729a
gnu: sloccount: Use INVOKE. 
* gnu/packages/code.scm (sloccount)[arguments]: Use INVOKE and unconditionally
return #T from build phases.
 2019-01-24 23:08:09 +01:00
Ricardo Wurmus c28bf42f2a
gnu: axoloti-patcher: Use INVOKE. 
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
 2019-01-24 23:07:10 +01:00
Ricardo Wurmus 1ae04a2acc
gnu: axoloti-runtime: Use INVOKE. 
* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Use INVOKE and return
  #T from build phases unconditionally.
 2019-01-24 23:06:33 +01:00
Ricardo Wurmus 6e59d91af1
gnu: clamav: Unconditionally return #T from build phase. 
* gnu/packages/antivirus.scm (clamav)[arguments]: Use INVOKE.
 2019-01-24 21:18:11 +01:00
Ricardo Wurmus bdd914af00
gnu: anthy: Unconditionally return #T from check phase. 
* gnu/packages/anthy.scm (anthy)[arguments]: Use INVOKE.
 2019-01-24 21:18:11 +01:00
Ricardo Wurmus 562a077683
gnu: git-repo: Unconditionally return #T from "check" phase. 
* gnu/packages/android.scm (git-repo)[arguments]: Use INVOKE.
 2019-01-24 21:18:11 +01:00
Ricardo Wurmus 50233d9570
gnu: flint: Unconditionally return #T from build phases. 
* gnu/packages/algebra.scm (flint)[arguments]: Use INVOKE in "configure"
phases.
 2019-01-24 21:18:11 +01:00
Kei Kebreau f1618a0f2f
gnu: milkytracker: Add RtMidi and zziplib support. 
* gnu/packages/music.scm (milkytracker)[inputs]: Add rtmidi and zziplib.
 2019-01-24 12:30:45 -05:00
Kei Kebreau acfb735787
gnu: cdogs-sdl: Update to 0.6.9. 
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.9.
 2019-01-24 10:30:42 -05:00
Ricardo Wurmus 67f39dd514
gnu: pari-gp: Address TeX errors. 
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Replace texlive-tiny with
texlive-union of texlive-fonts-amsfonts and texlive-latex-amsfonts.
[arguments]: Use INVOKE in configure phase.
 2019-01-24 13:46:39 +01:00
Ricardo Wurmus fe2bfabe8b
gnu: texlive-fonts-amsfonts: Build more fonts. 
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]: Convert afm files
to tfm; also build missing tfm files via fontinst.
[native-inputs]: Replace texlive-fonts-cm, texlive-metafont-base, and
texlive-bin with a texlive-union of texlive-tex-fontinst-base,
texlive-fonts-cm, and texlive-metafont-base; add amsfonts-plain, amsfonts-map,
and amsfonts-afm.
 2019-01-24 13:46:39 +01:00
Ricardo Wurmus 513fff4c04
gnu: Add texlive-tex-fontinst-base. 
* gnu/packages/tex.scm (texlive-tex-fontinst-base): New variable.
 2019-01-24 13:46:39 +01:00
Ricardo Wurmus bae65dc45f
gnu: texlive-latex-fancyvrb: Build fvrb-ex. 
* gnu/packages/tex.scm (texlive-latex-fancyvrb)[arguments]: Supply
tex-format.
 2019-01-24 13:46:39 +01:00
Ricardo Wurmus 26a0506104
gnu: texlive-fonts-cm: Build bitmap fonts at 600dpi. 
* gnu/packages/tex.scm (texlive-fonts-cm)[arguments]: Build pk files and
install them.
 2019-01-24 13:46:39 +01:00
Ricardo Wurmus 6858ade2e5
gnu: texlive-latex-base: Put fewer paths on TEXINPUTS. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Use double slash for
recursive directory search instead of FIND-FILES.
 2019-01-24 13:46:39 +01:00
Ricardo Wurmus e2f47efee6
gnu: catimg: Simplify. 
* gnu/packages/image-viewers.scm (catimg)[arguments]: Rename custom
"configure" phase to "patch-convert"; remove custom "build" phase; move
"install-script" phase after "install"; simplify phases.
 2019-01-24 13:46:38 +01:00
Rutger Helling d39a54ff72
gnu: wine: Hard-code vulkan loader. 
* gnu/packages/wine.scm (wine)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
* gnu/packages/wine.scm (wine-minimal)[arguments]: Don't inherit phases. Add
'patch-dlopen-paths phase.
 2019-01-24 11:01:50 +01:00
Rutger Helling e3b1d4ea6e
gnu: wine: Add vkd3d support. 
* gnu/packages/wine.scm (wine)[inputs]: Add vkd3d.
* gnu/packages/wine.scm (wine-staging)[inputs]: Remove vkd3d, inherit from
wine instead.
 2019-01-24 09:36:00 +01:00
Rutger Helling dcf6df43ab
gnu: vkd3d: Use wine-minimal. 
* gnu/packages/vulkan.scm (vkd3d): Use wine-minimal instead of wine.
 2019-01-24 09:36:00 +01:00
Rutger Helling a5466f38c1
gnu: Add wine-minimal. 
* gnu/packages/wine.scm (wine-minimal): New variable.
 2019-01-24 09:35:59 +01:00
Leo Famulari af83d59ed5
gnu: certbot, python-acme: Update to 0.30.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.30.0.
 2019-01-24 01:45:17 -05:00
Maxim Cournoyer ae283c184a
gnu: gnucash-docs: Fix source URI. 
The source URI was renamed from "gnucash-docs-3.4-1.tar.gz" to
"gnucash-docs-3.4a.tar.gz".  The content is identical since the hash hasn't
changed.

* gnu/packages/gnucash.scm (gnucash-docs)[source]: Update URI to match
  upstream change.
 2019-01-23 23:09:40 -05:00
Mark H Weaver 5ccf3dd0a1
gnu: linux-libre@4.14: Update to 4.14.95. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.95.
(%linux-libre-4.14-hash): Update hash.
 2019-01-23 21:51:21 -05:00
Mark H Weaver 02493dfa13
gnu: linux-libre@4.9: Update to 4.9.152. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.152.
 2019-01-23 21:50:35 -05:00
Mark H Weaver ff0b73028c
gnu: linux-libre: Make CRYPTO_CRC32C a built-in on arm64. 
Fixes <https://bugs.gnu.org/34162>
Reported by Vagrant Cascadian <vagrant@debian.org>

Note that CRYPTO_CRC32C was already a built-in in our default
configurations for other systems.

* gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf
(CONFIG_CRYPTO_CRC32C): Change from 'm' to 'y'.
 2019-01-23 21:32:14 -05:00
Gabriel Hondet ea7fa78a74
gnu: Add ghc-c2hs. 
* gnu/packages/haskell.scm (ghc-c2hs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-23 23:35:12 +01:00
Arne Babenhauserheide 5bbb04f9d1
gnu: Add emacs-xwidgets. 
* gnu/packages/emacs.scm (emacs-xwidgets): new variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-23 23:35:12 +01:00
Gabriel Hondet 1d209d06ed
gnu: Add ocaml-craml. 
* gnu/packages/ocaml.scm (ocaml-craml): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-23 21:51:14 +01:00
Gabriel Hondet ca53346dd5
gnu: ocaml-cmdliner: Update to 1.0.2. 
* gnu/packages/ocaml.scm (ocaml-cmdliner): Update to 1.0.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-23 21:51:09 +01:00
Gabriel Hondet cdcbccd17c
gnu: ocaml-fmt: Update to 0.8.5. 
* gnu/packages/ocaml.scm (ocaml-fmt): Update to 0.8.5.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-23 21:50:56 +01:00
Gabriel Hondet f0dece30b4
gnu: ocaml-uchar: Update to 0.0.2. 
* gnu/packages/ocaml.scm (ocaml-uchar): Update to 0.0.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-23 21:50:48 +01:00
Ricardo Wurmus 5d3f16e438
gnu: geeqie: Use GTK+ 3. 
* gnu/packages/image-viewers.scm (geeqie)[inputs]: Replace gtk+-2 with gtk+.
 2019-01-23 21:42:48 +01:00
Ricardo Wurmus 027f97b13f
gnu: geeqie: Remove custom bootstrap phase. 
* gnu/packages/image-viewers.scm (geeqie)[arguments]: Remove invocation of
autogen.sh script; rename "autogen" phase to "pre-bootstrap".
 2019-01-23 21:40:42 +01:00
Ricardo Wurmus f67cb8eb8c
gnu: cdrtools: Remove custom build and install phases. 
* gnu/packages/cdrom.scm (cdrtools)[arguments]: Add make-flags; remove custom
"build" and "install" phases.
 2019-01-23 21:34:16 +01:00
Ricardo Wurmus 77e61e25c2
gnu: python2-scientific: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-scientific)[arguments]: Unconditionally
return #T from "build" phase.
 2019-01-23 18:39:56 +01:00
Ricardo Wurmus ac599a0999
gnu: python-flasgger: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-flasgger)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:39:42 +01:00
Ricardo Wurmus 204ad455ec
gnu: python2-larch: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-larch)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:39:22 +01:00
Ricardo Wurmus cbeee88181
gnu: python2-ttystatus: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-ttystatus)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:39:07 +01:00
Ricardo Wurmus 6c826d3278
gnu: python2-cliapp: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-cliapp)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:38:44 +01:00
Ricardo Wurmus f987ac307b
gnu: python2-ruamel.ordereddict: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-ruamel.ordereddict)[arguments]:
Unconditionally return #T from "check" phase.
 2019-01-23 18:38:29 +01:00
Ricardo Wurmus ee2bb94432
gnu: python-pbkdf2: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-pbkdf2)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:38:13 +01:00
Ricardo Wurmus 831080a69b
gnu: python-termstyle: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-termstyle)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:37:59 +01:00
Ricardo Wurmus 6568bd5df2
gnu: python-validictory: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-validictory)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:37:42 +01:00
Ricardo Wurmus c988afda6f
gnu: python-colorspacious: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-colorspacious)[arguments]:
Unconditionally return #T from "check" phase.
 2019-01-23 18:37:19 +01:00
Ricardo Wurmus 4fc898dad9
gnu: python-numpy-documentation: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-numpy-documentation)[arguments]:
Use INVOKE instead of SYSTEM*.
 2019-01-23 18:32:27 +01:00
Ricardo Wurmus 38ec0f6adc
gnu: python-spectra: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-spectra)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:26:25 +01:00
Maxim Cournoyer d79e0b3a03
gnu: emacs-elpy: Update to 1.28.0. 
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.28.0.
 2019-01-23 12:20:21 -05:00
Maxim Cournoyer 40bd0aa37b
gnu: python-jedi: Update to 0.13.2. 
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.13.2.
 2019-01-23 12:20:21 -05:00
Ricardo Wurmus dfafc29bcf
gnu: python2-pystache: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-pystache)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:16:49 +01:00
Ricardo Wurmus 8d46679951
gnu: python-jsonschema: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-jsonschema)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:14:22 +01:00
Ricardo Wurmus 93e7b2099b
gnu: python-netcdf4: Update to 1.4.2. 
* gnu/packages/python-xyz.scm (python-netcdf4): Update to 1.4.2.
[arguments]: Remove custom "check" phase; add "configure-locations" phase.
[propagated-inputs]: Add python-cftime.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus d362b11d2a
gnu: Add python-cftime. 
* gnu/packages/python-xyz.scm (python-cftime): New variable.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus e253b94dc6
gnu: Add python-coveralls. 
* gnu/packages/python-check.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 8b89dedc37
gnu: Add python-sh. 
* gnu/packages/python-xyz.scm (python-sh): New variable.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 21ccc01d4c
gnu: python-odfpy: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-odfpy)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 49ff882740
gnu: python-faker: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-faker)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus e59dd3415d
gnu: python-rarfile: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-rarfile)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 40b8c4e34d
gnu: python2-ipaddr: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-ipaddr)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 35d79d6103
gnu: python-tables: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Unconditionally
return #T from "check" and "build" phases.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 45fd0081ec
gnu: python-xlrd: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-xlrd)[arguments]: Unconditionally return
 #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 2d7db19226
gnu: python-cram: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-cram)[arguments]: Unconditionally return
 #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 7904d6fa2c
gnu: python-ptyprocess: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-ptyprocess)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:30 +01:00
Ricardo Wurmus 4f0a089479
gnu: python-flake8-polyfill: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[arguments]:
Unconditionally return #T form "check" phase.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus 4a4a7d9ad6
gnu: python2-backports-shutil-get-terminal-size: Use INVOKE. 
* gnu/packages/python-xyz.scm (python2-backports-shutil-get-terminal-size)
[arguments]: Unconditionally return #T from "check" phase.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus 5d7a6f1cea
gnu: python-mpmath: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-mpmath)[arguments]: Unconditionally
return #T in "check" phase.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus dff0197e60
gnu: python-beautifulsoup4: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-beautifulsoup4)[arguments]:
Unconditionally return #T from "check" phase.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus 95b707fb46
gnu: python-honcho: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-honcho)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus acb75c0328
gnu: python-pycparser: Use INVOKE. 
* gnu/packages/python-xyz.scm (python-pycparser)[arguments]: Unconditionally
return #T from "check" phase.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus d1c4f329d1
gnu: python-orderedmultidict: Return #T from build phase. 
* gnu/packages/python-xyz.scm (python-orderedmultidict)[arguments]:
Unconditionally return #T from phase "fix-tests".
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus 5d1ade85c4
gnu: python2-pysnptools: Update to 0.3.13. 
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.3.13.
[native-inputs]: Remove unzip; add python2-cython.
[arguments]: Disable tests.
 2019-01-23 18:13:29 +01:00
Ricardo Wurmus 1b66989bed
gnu: python2-pysnptools: Use better home page. 
* gnu/packages/python-xyz.scm (python2-pysnptools)[home-page]: Use better home
page.
 2019-01-23 18:13:29 +01:00
Maxim Cournoyer f0caf7607d
gnu: Add emacs-magit-gerrit. 
* gnu/packages/emacs-xyz.scm (emacs-magit-gerrit): New variable.
 2019-01-23 07:54:44 -05:00
Maxim Cournoyer 60bfefb615
gnu: gnucash: Add information about how to use the documentation. 
It was not obvious that another application, Yelp, needed to be installed to
so that opening the help of GnuCash from within the application would work.

Fixes issue #33960 (see: https://issues.guix.info/issue/33960).

* gnu/packages/gnucash.scm (gnucash)[description]: Explain how to enable the
  documentation.
 2019-01-23 07:46:28 -05:00
Maxim Cournoyer 2a67ea73c3
gnu: gnucash: Update to 3.4. 
* gnu/packages/gnucash.scm (gnucash): Update to 3.4.
[outputs]: Add debug.
(gnucash-docs): Update to 3.4-1.
[native-inputs]: Update docbook-xml to version 4.5 and drop older versions.
 2019-01-23 07:46:28 -05:00
Maxim Cournoyer a2e7e95663
gnu: gnucash: Disable the stress-options-test using a phase. 
The qof test is also reinstated; it was failing because the needed locales
were not installed.

* gnu/packages/patches/gnucash-disable-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gnucash.scm (gnucash)[patches]: Remove it.
[phases]{disable-stress-options-test}: Implement it using SUBSTITUTES*.
{install-locales}: New phase.
 2019-01-23 07:46:27 -05:00
Maxim Cournoyer 7c8ea31ac9
gnu: gnucash: Convert price-quotes-perl patch to a phase. 
* gnu/packages/patches/gnucash-price-quotes-perl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gnucash.scm (gnucash)[patches]: Remove it.
[phases]{fix-finance-quote-check}: Implement it using SUBSTITUTES*.
 2019-01-23 07:46:27 -05:00
Maxim Cournoyer 20626f62c4
gnu: gnucash: Fix indentation. 
* gnu/packages/gnucash.scm (gnucash): Fix indentation.
 2019-01-23 07:46:27 -05:00
Ricardo Wurmus 672489622b
gnu: Add emacs-simple-mpc. 
* gnu/packages/emacs-xyz.scm (emacs-simple-mpc): New variable.
 2019-01-23 12:27:40 +01:00
Ricardo Wurmus a38fa63b4b
gnu: guile-wisp: Simplify arguments and fix indentation. 
* gnu/packages/guile.scm (guile-wisp)[arguments]: Slightly simplify and fix
indentation.
 2019-01-23 12:27:40 +01:00
Ricardo Wurmus ef841dca91
gnu: guile-wisp: Update home page. 
* gnu/packages/guile.scm (guile-wisp)[home-page]: Use HTTPS.
 2019-01-23 12:27:40 +01:00
Ricardo Wurmus 2d5598c1d7
gnu: guile-wisp: Update to 0.9.9. 
* gnu/packages/guile.scm (guile-wisp): Update to 0.9.9.
 2019-01-23 12:27:40 +01:00
Ricardo Wurmus 2b965485e2
Merge branch 'master' into staging 2019-01-23 12:08:54 +01:00
Ricardo Wurmus 5aaef5c5de
Merge branch 'master' into staging 2019-01-23 12:08:27 +01:00
Efraim Flashner b2c08402f5
gnu: emacs-emms-mode-line-cycle: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-emms-mode-line-cycle)[source]: Use
'git-fetch'.
 2019-01-23 10:51:21 +02:00
Efraim Flashner ae848798a6
gnu: emacs-ghub: Update to 3.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0.
[propagated-inputs]: Add emacs-dash, emacs-graphql, emacs-treepy.
[synopsis, description]: Update.
(emacs-magit, emacs-magit-svn)[propagated-inputs]: Add emacs-graphql,
emacs-treepy.
[arguments]: Update accordingly.
 2019-01-23 10:51:21 +02:00
Efraim Flashner d49d053428
gnu: emacs-magit: Update to 2.13.1. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 2.13.1.
[source]: Use 'git-fetch'.
 2019-01-23 10:51:21 +02:00
Efraim Flashner f5350a07dc
gnu: emacs-haskell-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode)[source]: Use 'git-fetch'.
 2019-01-23 10:51:21 +02:00
Efraim Flashner 0c662875b9
gnu: emacs-ghub: Don't use unstable-tarball. 
* gnu/packages/emacs-xyz.scm (emacs-ghub)[source]: Use 'git-fetch'.
 2019-01-23 10:51:20 +02:00
Efraim Flashner 427530b96d
gnu: emacs-magit-svn: Update to 2.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-magit-svn): Update to 2.2.1.
 2019-01-23 10:51:20 +02:00
Efraim Flashner ff1d5478a1
gnu: emacs-magit-svn: Add missing inputs. 
* gnu/packages/emacs-xyz.scm (emacs-magit-svn)[propagated-inputs]: Add
emacs-ghub, emacs-magit-popup.
[arguments]: Adjust accordingly.
 2019-01-23 10:51:20 +02:00
Efraim Flashner daa82371b8
gnu: eamcs-magit-svm: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-magit-svn)[source]: Use 'git-fetch'.
[native-inputs]: Remove tar, gzip.
[arguments]: Adjust code accordingly.
 2019-01-23 10:51:20 +02:00
Efraim Flashner 8b9fab8f76
gnu: emacs-git-modes: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-git-mode)[source]: Use 'git-fetch'.
 2019-01-23 10:51:20 +02:00
Rutger Helling 07725a0a66
gnu: wine-staging: Update to 4.0. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0.
* gnu/packages/wine.scm (wine-staging): Update to 4.0.
 2019-01-23 09:14:29 +01:00
Rutger Helling 0e41f95eec
gnu: wine: Update to 4.0. 
* gnu/packages/wine.scm (wine): Update to 4.0.
[inputs]: Add sdl2 and vulkan-loader.
* gnu/packages/wine.scm (wine-staging)[inputs]: Remove sdl2 and vulkan-loader,
inherit from wine instead.
 2019-01-23 09:04:45 +01:00
Mark H Weaver 6a6799b27a
gnu: linux-libre: Update to 4.20.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.4.
(%linux-libre-hash): Update hash.
 2019-01-23 01:16:17 -05:00
Mark H Weaver 5123e57fc9
gnu: linux-libre@4.19: Update to 4.19.17. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.17.
(%linux-libre-4.19-hash): Update hash.
 2019-01-23 01:15:20 -05:00
Eric Bavier 4bdd41bb83
gnu: handbrake: Upgrade to 1.2.0. 
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.2.0.  Use patch.
[native-inputs]: Add cmake.
[inputs]: Add speex.
[arguments]: Disable runtime update checks via #:configure-flags.
 2019-01-22 23:36:26 -06:00
Eric Bavier 3292219097
gnu: python2: Fix test flags. 
Reverts a988393997 in favor of a cleaner
approach.

* gnu/packages/python.scm (python-2.7)[arguments]: 'EXTRATESTOPTS' ->
'TESTOPTS'.  This overrides the default '-l' argument for memory leak checks
which is not compatible with the -j for parallelism.
 2019-01-22 22:00:50 -06:00
Carl Dong 38f77be464
gnu: mariadb: Disable sporadically failing tests. 
* guix/packages/databases.scm: Disable sporadically failing tests.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
 2019-01-22 21:42:52 -06:00
Maxim Cournoyer 82328c0105
gnu: emacs-ert-runner: Update to latest upstream commit. 
The latest tag is many years old, and the latest upstream branch includes
important fixes such as displaying correctly the backtrace upon encountering
errors (see:
4b6e6cb81f).

* gnu/packages/emacs-xyz.scm (emacs-ert-runner): Update to the latest upstream
commit.
[origin]: Use GIT-FETCH instead of URL-FETCH to mitigate against GitHub's
dynamically generated tarballs.
 2019-01-22 21:20:04 -05:00
Ludovic Courtès 2d04076332
gnu: Remove duplicate record fields. 
* gnu/packages/haskell.scm (ghc-case-insensitive): Remove duplicate
'inputs' field.
* gnu/packages/python-xyz.scm (python2-pysnptools): Remove duplicate
'native-inputs' field.
* gnu/tests/install.scm (%separate-home-os): Remove duplicate 'type'
field.
 2019-01-22 23:04:05 +01:00
Danny Milosavljevic d1dfcc7c1b
gnu: Add fakeroot. 
* gnu/packages/linux.scm (fakeroot): New variable.
 2019-01-22 16:38:19 +01:00
Danny Milosavljevic c63d7b7975
gnu: Add genext2fs. 
* gnu/packages/linux.scm (genext2fs): New variable.
 2019-01-22 16:12:08 +01:00
Carl Dong 0a59cc6e85
gnu: bitcoin-core: Update to 0.17.1. 
* gnu/packages/finances.scm (bitcoin-core): Update to 0.17.1.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-01-22 15:26:24 +01:00
Danny Milosavljevic 0e9600cbbd
gnu: bitcoin-core: End phase in #t. 
* gnu/packages/finance.scm (bitcoin-core)[arguments]<#:phases>[set-home]:
End phase in #t.
 2019-01-22 15:26:17 +01:00
Carl Dong 99629e5a11
gnu: bitcoin-core: Make bitcoin-qt deterministic. 
* gnu/packages/finance.scm (bitcoin-core)[arguments]<#:phases>
[make-qt-deterministic]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-01-22 15:26:03 +01:00
Ricardo Wurmus 0845999a5e
gnu: Add glibc-locales variants for older versions of glibc. 
* gnu/packages/base.scm (make-glibc-locales, make-glibc-utf8-locales): New
procedures.
(glibc-locales): Express in terms of make-glibc-locales.
(glibc-utf8-locales): Express in terms of make-glibc-utf8-locales.
(glibc-locales-2.27, glibc-utf8-locales-2.27): New variables.
 2019-01-22 15:10:59 +01:00
Ricardo Wurmus 11627ca550
gnu: paps: Update to 0.7.0-1.37e6ca1. 
* gnu/packages/pdf.scm (paps): Update to 0.7.0-1.37e6ca1.
[source]: Fetch from git.
[arguments]: Add phase "do-not-run-configure-script-during-bootstrap".
[native-inputs]: Add autoconf, automake, gettext-minimal, glib:bin and
intltool.
[home-page]: Point to Github.
 2019-01-22 15:09:40 +01:00
Efraim Flashner 354d27e5dc
gnu: python-websocket-client: Update to 0.54.0. 
* gnu/packages/python-web.scm (python-websocket-client): Update to 0.54.0.
[properties]: New field.
(python2-websocket-client)[native-inputs]: Add
python2-backport-ssl-match-hostname.
 2019-01-22 12:59:14 +02:00
Efraim Flashner e2227b6ada
gnu: python-isort: Update to 4.3.4. 
* gnu/packages/python-xyz.scm (python-isort): Update to 4.3.4.
[source]: Use 'git-fetch'.
[properties]: New field.
(python2-isort)[native-inputs]: Add python2-futures.
 2019-01-22 11:47:44 +02:00
Efraim Flashner dddd7a75fa
gnu: python-wrapt: Update to 1.11.1. 
* gnu/packages/python-xyz.scm (python-wrapt): Update to 1.11.1.
 2019-01-22 11:47:43 +02:00
Efraim Flashner 2782bd51f4
gnu: python-virtualenv: Update to 16.1.0. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 16.1.0.
[arguments]: Move custom 'check phase to custom 'disable-failing-test
phase and re-instate standard 'check phase.
 2019-01-22 11:47:40 +02:00
Taylan Kammer db58e326e5
gnu: guile-bytestructures: Update to 1.0.5. 
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.5.
 2019-01-22 02:18:13 +01:00
Ludovic Courtès f896abc71f
gnu: emacs-nix-mode: Move to emacs-xyz.scm. 
This removes emacs-xyz.scm from the closure of (gnu packages base).

* gnu/packages/package-management.scm (emacs-nix-mode): Move back to...
* gnu/packages/emacs-xyz.scm (emacs-nix-mode): ... here.  New variable.
 2019-01-21 23:10:07 +01:00
Pierre Neidhardt 6185732390
gnu: fortune-mod: Skip failing tests. 
* gnu/packages/games.scm (fortune-mod)[arguments]: Skip failing tests.
 2019-01-21 23:06:19 +01:00
Pierre Neidhardt f528588a9f
gnu: mediainfo: Update to 18.12. 
* gnu/packages/video.scm (mediainfo): Update to 18.12.
[arguments]: Remove manual autogen.sh.
 2019-01-21 22:42:48 +01:00
Pierre Neidhardt c0588f98c5
gnu: libzen: Fix sha256 and remove manual autogen.sh. 
* gnu/packages/cpp.scm (libzen)[source]: Fix sha256.
[arguments]: Remove manual autogen.sh.
 2019-01-21 22:40:25 +01:00
Christopher Baines 85e4579469
gnu: python-futures: Enable tests. 
Re-enable the tests, as the python-2 package now has the support
directory. Also, switch to running the tests via the test_futures.py script to
avoid errors like:

  AttributeError: 'AsCompletedTests' object has no attribute 'executor'

* gnu/packages/python.scm (python2-futures)[arguments]: Run the
test_futures.py script to run the tests.
 2019-01-21 19:51:52 +00:00
Christopher Baines d453b0e11d
gnu: python-2.7: Include /lib/python.../test/support. 
Don't remove the support directory from the /lib/python.../test/ directory, as
this is used from the test_support module.

  /gnu/store/...-python2-2.7.15/lib/python2.7/test/test_support.py:2: in <module>
      import test.support
  E   ImportError: No module named support

* gnu/packages/python.scm (python-2.7)[arguments]: Change the 'remove-tests
phase to not remove the support directory.
 2019-01-21 19:51:41 +00:00
Danny Milosavljevic 0233bdde6c
gnu: xen: Update comments. 
* gnu/packages/virtualization.scm (xen): Update comments.
 2019-01-21 12:23:58 +01:00
Danny Milosavljevic 504f3ac840
gnu: xen: Don't patch etherboot Makefile. 
* gnu/packages/virtualization.scm (xen)[arguments]<#:phases>[patch]:
Don't patch etherboot's "Makefile".
 2019-01-21 12:09:32 +01:00
Mathieu Othacehe b65b78ff38
gnu: calibre: Fix PDF to EPUB conversion. 
When trying to convert a PDF to EPUB, the following error occurs:

File "/gnu/store/kz6bgqw9z7akj11zh20wkx14cgq0s3n2-calibre-3.35.0/lib/calibre/calibre/ebooks/pdf/pdftohtml.py", line 76, in pdftohtml
    _('Could not find pdftohtml, check it is in your PATH'))

Hardcode pdftohtml binary path by patching pdftohtml.py.

* gnu/packages/ebook.scm (calibre)[arguments]: Patch pdftohtml.py in
'configure phase to set hardcode pdftohtml binary path.
 2019-01-21 10:56:24 +01:00
Efraim Flashner 26e4203be1
gnu: moreutils: Update to 0.63. 
* gnu/packages/moreutils.scm (moreutils): Update to 0.63.
[arguments]: All phases return #t.
 2019-01-21 11:31:06 +02:00
Efraim Flashner f3359f93f6
gnu: perl-module-scandeps: Update to 1.27. 
* gnu/packages/perl.scm (perl-module-scandeps): Update to 1.27.
 2019-01-21 11:21:14 +02:00
Efraim Flashner 5b0fe2b8f1
gnu: perl-json: Update to 4.01. 
* gnu/packages/perl.scm (perl-json): Update to 4.01.
[source]: Update source uri.
 2019-01-21 11:21:14 +02:00
Efraim Flashner 8c396a0576
gnu: perl-json-xs: Update to 4.0. 
* gnu/packages/perl.scm (perl-json-xs): Update to 4.0.
[native-inputs]: Add perl-canary-stability.
 2019-01-21 11:21:14 +02:00
Efraim Flashner cf867de061
gnu: perl-file-remove: Update to 1.58. 
* gnu/packages/perl.scm (perl-file-remove): Update to 1.58.
[description]: Texify the description.
 2019-01-21 11:21:14 +02:00
Efraim Flashner 755fc87305
gnu: perl-file-homedir: Update to 1.004. 
* gnu/packages/perl.scm (perl-file-homedir): Update to 1.004.
 2019-01-21 11:21:13 +02:00
Efraim Flashner cbe6f6e385
gnu: perl-file-which: Update to 1.23. 
* gnu/packages/perl.scm (perl-file-which): Update to 1.23.
[source]: Update source uri.
[home-page]: Update to new home-page.
 2019-01-21 11:21:13 +02:00
Efraim Flashner 6a19aaca50
gnu: perl-file-slurp: Update to 9999.25. 
* gnu/packages/perl.scm (perl-file-slurp): Update to 9999.25.
[source]: Update source uri.
 2019-01-21 11:21:13 +02:00
Efraim Flashner f860a068f9
gnu: perl-text-template: Update to 1.54. 
* gnu/packages/perl.scm (perl-text-template): Update to 1.54.
[native-inputs]: Add perl-test-more-utf8, perl-test-warnings.
 2019-01-21 11:21:13 +02:00
Efraim Flashner 26eb9260f9
gnu: Add perl-test-more-utf8. 
* gnu/packages/perl-check.scm (perl-test-more-utf8): New variable.
 2019-01-21 11:21:12 +02:00
Danny Milosavljevic 7aae5d6154
gnu: xen: Update comment. 
Follow-up to 35e8900da0.

* gnu/packages/virtualization.scm (xen): Update comment.
 2019-01-21 10:15:53 +01:00
Danny Milosavljevic 35e8900da0
gnu: Add xen. 
* gnu/packages/virtualization.scm (xen): New variable.
 2019-01-21 10:15:04 +01:00
Clément Lassieur 0d928d223b
gnu: gajim: Update to 1.1.2. 
* gnu/packages/messaging.scm (gajim): Update to 1.1.2.
 2019-01-21 09:25:43 +01:00
Clément Lassieur 37ce9d957b
gnu: python-nbxmpp: Update to 0.6.9. 
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.9.
 2019-01-21 09:25:39 +01:00
Efraim Flashner 9f8fee5027
gnu: qscintilla: Update to 2.10.8. 
* gnu/packages/qt.scm (qscintilla): Update to 2.10.8.
(python-qscintilla)[arguments]: Update custom 'configure phase.
 2019-01-21 10:03:09 +02:00
Efraim Flashner d4274628a6
gnu: python-pyqt: Update to 5.11.3. 
* gnu/packages/qt.scm (python-pyqt): Update to 5.11.3.
* gnu/packages/patches/pyqt-public-sip: Update patch.
 2019-01-21 10:03:09 +02:00
Efraim Flashner 0dae43ac6a
gnu: python-sip: Update to 4.19.13. 
* gnu/packages/qt.scm (python-sip): Update to 4.19.13.
 2019-01-21 10:03:09 +02:00
Efraim Flashner c82cd3a7bd
gnu: qt: Update to 5.11.3. 
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtscxml,
qtgamepad, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d,
qtnetworkauth, qtremoteobjects, qtspeech): Update to 5.11.3.
(qt)[source]: Remove patch.
* gnu/packages/patches/qt-5-renameat2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-21 10:03:05 +02:00
Tobias Geerinckx-Rice 7469b98db3
gnu: xcursorgen: Update to 1.0.7. 
* gnu/packages/xorg.scm (xcursorgen): Update to 1.0.7.
 2019-01-21 03:12:25 +01:00
Tobias Geerinckx-Rice 969bbf8bd6
gnu: umoci: Update to 0.4.3. 
* gnu/packages/virtualization.scm (umoci): Update to 0.4.3.
 2019-01-21 03:12:25 +01:00
Tobias Geerinckx-Rice dba326def1
gnu: vlc: Update to 3.0.6. 
* gnu/packages/video.scm (vlc): Update to 3.0.6.
 2019-01-21 03:12:25 +01:00
Tobias Geerinckx-Rice 17634f0b2a
gnu: perl-xml-compile: Update to 1.61. 
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.61.
 2019-01-21 03:12:25 +01:00
Andreas Enge 8e3e51df11
python-cysignals: Update to 1.9.0. 
* gnu/packages/python-xyz.scm (python-cysignals, python2-cysignals):
Update to 1.9.0.
 2019-01-20 23:32:18 +01:00
Ludovic Courtès 3e2d4e69c3
Merge branch 'master' into staging 2019-01-20 22:12:10 +01:00
Efraim Flashner 32d92d2cde
gnu: freedink-data: Update to 1.08.20190120. 
* gnu/packages/games.scm (freedink-data): Update to 1.08.20190120.
 2019-01-20 22:33:06 +02:00
Efraim Flashner 8ca06df5c2
gnu: freedink-dfarc: Add upstream refresh information. 
* gnu/packages/games.scm (freedink-dfarc)[properties]: New field.
 2019-01-20 22:33:06 +02:00
Efraim Flashner 151fa92672
gnu: fredink-data: Add upstream refresh information. 
* gnu/packages/games.scm (freedink-data)[properties]: New field.
 2019-01-20 22:33:06 +02:00
Efraim Flashner f9eab0be73
gnu: freedink-engine: Add upstream refresh information. 
* gnu/packages/games.scm (freedink-engine)[properties]: New field.
 2019-01-20 22:33:00 +02:00
Pkill -9 e5ad2cdf17
gnu: Add pencil2d. 
* gnu/packages/animation.scm (pencil2d): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-20 19:21:43 +01:00
Pierre Langlois b06966b4e1
gnu: qjackctl: Disable xunique. 
* gnu/packages/audio.scm (qjackctl)[arguments]: Pass "--disable-xunique" to
configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-20 18:51:51 +01:00
Tobias Geerinckx-Rice ff8a66bc61
gnu: ocrad: Update to 0.27. 
* gnu/packages/ocr.scm (ocrad): Update to 0.27.
 2019-01-20 16:34:43 +01:00
Tobias Geerinckx-Rice 04f3a5a4ae
gnu: links: Update to 2.18. 
* gnu/packages/web-browsers.scm (links): Update to 2.18.
 2019-01-20 16:34:42 +01:00
Tobias Geerinckx-Rice 1c17adbc79
gnu: csound: Update to 6.12.0. 
* gnu/packages/audio.scm (csound): Update to 6.12.0.
 2019-01-20 15:34:09 +01:00
Kei Kebreau 71f2b4b8f3
gnu: vboot-utils: Install development keys. 
* gnu/packages/bootloaders.scm (vboot-utils)[arguments]: Add 'install-devkeys'
phase.
 2019-01-20 01:51:39 -05:00
Ludovic Courtès 93d137020b
gnu: subversion: Mention "svn" in the description. 
* gnu/packages/version-control.scm (subversion)[description]: Mention
"svn".
 2019-01-20 01:42:11 +01:00
Ludovic Courtès 7e6d8d366a
ci: Use a valid 'current-guix'. 
This fixes a regression introduced in
b5f8c2c885 whereby 'current-guix' (needed
by some of the system tests) would fail to build.
Reported by Ricardo Wurmus <rekado@elephly.net>.

It also speeds up compilation of 'current-guix' since the channel
instance is already compiled or can be built quickly compared to the
default 'current-guix'.

* gnu/packages/package-management.scm (current-guix-package): New
variable.
(current-guix): Honor it.
* gnu/ci.scm (channel-build-system): New variable.
(channel-instances->derivation): New procedure.
(system-test-jobs): Add #:source and #:commit parameters.
Define 'instance' and parameterize CURRENT-GUIX-PACKAGE.
(hydra-jobs)[checkout, commit, source]: New variables.
Pass #:source and #:commit to 'system-test-jobs'.
 2019-01-20 01:42:11 +01:00
Nicolas Goaziou 85a3d63f4a
gnu: emacs-matrix-client: Update to a0623667. 
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Update to a0623667.
 2019-01-19 22:32:57 +01:00
Ricardo Wurmus 977403feb2
gnu: texlive-texmf: Fix build. 
This is a follow-up to commit a1b4d62cda.

* gnu/packages/tex.scm (texlive-texmf)[arguments]: Unset texlive-bin search
path.
 2019-01-19 19:55:56 +01:00
Efraim Flashner 560df540a6
gnu: Add endless-sky. 
* gnu/packages/games.scm (endless-sky): New variable.
 2019-01-19 19:18:37 +02:00
Rutger Helling 8d09e97b8c
gnu: wine-staging: Update to 4.0-rc7. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc7.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc7.
 2019-01-19 11:28:47 +01:00
Ludovic Courtès 9a0bc7b5aa
gnu: spacefm: Fix build against glibc 2.28. 
* gnu/packages/lxde.scm (spacefm)[source](modules, snippet): New fields.
 2019-01-19 01:26:34 +01:00
Ludovic Courtès 1d80ec44d3
gnu: youtube-dl: Update to 2019.01.17. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.17.
 2019-01-19 01:26:34 +01:00
Leo Famulari d680a8afd1
gnu: Inkscape: Update to 0.92.4. 
* gnu/packages/inkscape.scm (inkscape): Update to 0.92.4.
[source]: Remove obsolete patches.
 2019-01-18 18:45:37 -05:00
Tobias Geerinckx-Rice 043eeda100
gnu: smartmontools: Update to 7.0. 
* gnu/packages/admin.scm (smartmontools): Update to 7.0.
 2019-01-19 00:03:34 +01:00
Tobias Geerinckx-Rice 9e5709f00d
gnu: openconnect: Update to 8.02. 
* gnu/packages/vpn.scm (openconnect): Update to 8.02.
 2019-01-19 00:03:31 +01:00
Tobias Geerinckx-Rice 8b1d0ff43c
gnu: openconnect: Use HTTPS home page. 
* gnu/packages/vpn.scm (openconnect)[home-page]: Use HTTPS.
 2019-01-19 00:03:25 +01:00
Tobias Geerinckx-Rice 3a1d01ca32
gnu: liburcu: Update to 0.10.2. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.10.2.
 2019-01-19 00:03:23 +01:00
Tobias Geerinckx-Rice 4dfda8dce0
gnu: liburcu: Use HTTPS home page. 
* gnu/packages/datastructures.scm (liburcu)[home-page]: Use HTTPS.
 2019-01-19 00:03:14 +01:00
Nicolas Goaziou fdc7299a56
gnu: emacs-matrix-client: Bump revision. 
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Bump revision to trigger
  the update, since updating commit is not enough.
 2019-01-18 22:28:30 +01:00
Ricardo Wurmus 64a1ddba7a
gnu: graphene: Remove custom autogen phase. 
* gnu/packages/gtk.scm (graphene)[arguments]: Remove 'autogen phase.
 2019-01-18 20:37:34 +01:00
Ricardo Wurmus 3b39ae9f4b
gnu: Add libnfs. 
* gnu/packages/file-systems.scm (libnfs): New variable.
 2019-01-18 20:32:24 +01:00
Ricardo Wurmus 204cfbe1f4
gnu: Add mozjs-60. 
* gnu/packages/gnuzilla.scm (mozjs-60): New variable.
 2019-01-18 20:32:12 +01:00
Ricardo Wurmus 6cc147a31b
gnu: mozjs-52: Add configure flag to prevent crash. 
* gnu/packages/gnuzilla.scm (mozjs-52)[arguments]: Pass "--disable-jemalloc"
to prevent crashes in gnome-shell.
 2019-01-18 20:32:04 +01:00
Ricardo Wurmus 4b2ed6c2a3
gnu: Add libdazzle. 
* gnu/packages/gnome.scm (libdazzle): New variable.
 2019-01-18 20:29:28 +01:00
Ricardo Wurmus 0c90d4ad0a
gnu: Add libimobiledevice. 
* gnu/packages/libusb.scm (libimobiledevice): New variable.
 2019-01-18 20:27:58 +01:00
Ricardo Wurmus dddf975ffb
gnu: Add libusbmuxd. 
* gnu/packages/libusb.scm (libusbmuxd): New variable.
 2019-01-18 20:24:00 +01:00
Ricardo Wurmus 1b95533740
gnu: Add libplist. 
* gnu/packages/libusb.scm (libplist): New variable.
 2019-01-18 20:23:54 +01:00
Ricardo Wurmus 3ecb1d0552
gnu: libusb.scm: Use license: prefix. 
* gnu/packages/libusb.scm: Use "license:" prefix.
 2019-01-18 20:23:25 +01:00
Ricardo Wurmus bd9d3db6fe
gnu: Add umockdev. 
* gnu/packages/check.scm (umockdev): New variable.
 2019-01-18 20:22:27 +01:00
Ricardo Wurmus dbac4833b4
gnu: ibus: Do not hardcode Python version. 
* gnu/packages/ibus.scm (ibus)[arguments]: Remove hardcoded Python version.
 2019-01-18 17:58:58 +01:00
Amin Bandali 6654f8c144
gnu: z3: Update to 4.8.4. 
* gnu/packages/maths.scm (z3): Update to 4.8.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-01-18 11:12:59 -05:00
Rutger Helling 97da616144
gnu: xpra: Update to 2.4.3. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.3.
 2019-01-18 15:28:46 +01:00
Eric Bavier fd466fb815
gnu: stress-make: Fix glob configuration. 
* gnu/packages/debug.scm (stress-make)[arguments]: Adopt configure cache value
"make_cv_sys_gnu_glob=yes" from gnu-make package.
 2019-01-18 00:30:28 -06:00
Eric Bavier 4929ee9b19
gnu: rcs: disable buggy test t810. 
* gnu/packages/version-control.scm (rcs)[arguments]: New field.  Add
'disable-t810' phase.
 2019-01-17 22:10:58 -06:00
Nicolas Goaziou e6ab20f71d
gnu: emacs-matrix-client: Update to 2a95a1f. 
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Update to 2a95a1f.
[propagated-inputs]: Add `emacs-anaphora'.
 2019-01-17 22:49:12 +01:00
Nicolas Goaziou 60ceff7ef5
gnu: Add emacs-anaphora. 
* gnu/packages/emacs-xyz.scm (emacs-anaphora): New variable.
 2019-01-17 22:48:48 +01:00
Vagrant Cascadian cac00bbd97
gnu: electron-cash: Update to 3.3.4. 
* gnu/packages/finance.scm (electron-cash): Update to 3.3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-01-17 16:26:37 -05:00
Mark H Weaver 8b15b3a1e8
gnu: linux-libre: Update to 4.20.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.3.
(%linux-libre-hash): Update hash.
 2019-01-17 16:11:35 -05:00
Mark H Weaver df9db3d1d2
gnu: linux-libre@4.19: Update to 4.19.16. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.16.
(%linux-libre-4.19-hash): Update hash.
 2019-01-17 16:10:49 -05:00
Mark H Weaver cadb457a34
gnu: linux-libre@4.14: Update to 4.14.94. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.94.
(%linux-libre-4.14-hash): Update hash.
 2019-01-17 16:10:07 -05:00
Mark H Weaver 94c5f46217
gnu: linux-libre@4.9: Update to 4.9.151. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.151.
 2019-01-17 16:09:31 -05:00
Mark H Weaver 8ce7fb035f
gnu: linux-libre@4.4: Update to 4.4.171. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.171.
 2019-01-17 16:07:44 -05:00
Leo Famulari 2b65a9e6d1
gnu: OpenSSH: Fix CVE-2018-20685. 
* gnu/packages/patches/openssh-CVE-2018-20685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2019-01-17 14:02:04 -05:00
Ricardo Wurmus 3d7ad1dc9f
gnu: ghc-cryptonite: Disable tests. 
* gnu/packages/haskell-crypto.scm (ghc-cryptonite)[arguments]: Disable tests.
 2019-01-17 17:58:35 +01:00
Ricardo Wurmus 5de93cdba7
gnu: ghc-8: Patch ghc-pkg for reproducibility. 
Fixes <https://bugs.gnu.org/33922>.

Co-authored-by: Timothy Sample <samplet@ngyro.com>.

* gnu/packages/haskell.scm (ghc-8)[arguments]: Add build phase
"fix-ghc-pkg-nondeterminism".
 2019-01-17 17:56:50 +01:00
Mathieu Othacehe a8307a178b
gnu: Add guile-parted. 
* gnu/packages/guile.scm (guile-parted): New variable.
 2019-01-17 14:04:22 +01:00
Mathieu Othacehe 7e3e6d721d
gnu: guile-newt: Update to revision 4. 
* gnu/packages/guile.scm (guile-newt): Update to revision 4.
 2019-01-17 14:04:22 +01:00
Mathieu Othacehe 08af580bde
gnu: kmscon: Add runtime keymap update support. 
* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/terminals.scm (kmscon)[source]: Add patch.
 2019-01-17 14:04:20 +01:00
Mathieu Othacehe 15f0719e67
guile: newt: Update revision to 3. 
* gnu/packages/guile.scm (guile-newt): Update revision to 3.
 2019-01-17 14:04:20 +01:00
Gabriel Hondet 57cd7d92d8
gnu: Add ghc-tldr. 
* gnu/packages/haskell.scm (ghc-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-17 14:04:20 +01:00
Marius Bakke 073f5f2057
Revert "Revert "gnu: man-db: Embed absolute reference to 'preconv'."" 
This reverts commit ccb15b343e.

Now that we've fixed the segfault with groff's preconv (see
73b2ce8795), it's safe to re-apply this fix.
 2019-01-17 12:29:40 +01:00
Pierre Neidhardt 3d540c48e7
gnu: Add emacs-edbi-sqlite. 
* gnu/packages/emacs-xyz.scm (emacs-edbi-sqlite): New variable.
 2019-01-17 12:20:55 +01:00
Pierre Neidhardt c010ec65ae
gnu: Add emacs-edbi. 
* gnu/packages/emacs-xyz.scm (emacs-edbi): New variable.
 2019-01-17 12:20:54 +01:00
Pierre Neidhardt 8c98ce92b9
gnu: Add emacs-epc. 
* gnu/packages/emacs-xyz.scm (emacs-epc): New variable.
 2019-01-17 12:20:54 +01:00
Pierre Neidhardt 3e1fcc5ef4
gnu: Add emacs-ctable. 
* gnu/packages/emacs-xyz.scm (emacs-ctable): New variable.
 2019-01-17 12:20:54 +01:00
Pierre Neidhardt 5544a07fb5
gnu: Add emacs-e2wm. 
* gnu/packages/emacs-xyz.scm (emacs-e2wm): New variable.
 2019-01-17 12:20:54 +01:00
Pierre Neidhardt 9830f1a249
gnu: Add emacs-window-layout. 
* gnu/packages/emacs-xyz.scm (emacs-window-layout): New variable.
 2019-01-17 12:20:54 +01:00
Pierre Neidhardt 2c114220aa
gnu: Add perl-rpc-epc-service. 
* gnu/packages/libevent.scm (perl-rpc-epc-service): New variable.
 2019-01-17 12:20:54 +01:00
Pierre Neidhardt cbffb56cd4
gnu: Add perl-data-sexpression. 
* gnu/packages/perl.scm (perl-data-sexpression): New variable.
 2019-01-17 12:20:54 +01:00
Danny Milosavljevic 73b2ce8795
gnu: groff-minimal: Disable relocatability. 
* gnu/packages/groff.scm (groff-minimal)[arguments]<#:phases>
[disable-relocatability]: New phase.
 2019-01-17 10:07:07 +01:00
Gabriel Hondet 6c4a951a6e
gnu: gauche: Remove number of packages from description. 
* gnu/packages/scheme.scm (gauche)[description]: Remove number of packages.
[arguments]: Remove useless code.
 2019-01-17 08:24:30 +01:00
Hartmut Goebel 2615ee9520
gnu: kwindowsystem: Enable test-suite. 
* gnu/package/kde-frameworks.scm(kwindowsystem)
  [inputs]: Add openbox.
  [arguments] <#:tests?> Remove.
  <#:phases> 'blacklist-failing-tests: New phase.
  <#:phases> 'check: Start openbox, don't set QT_PLUGIN_PATH, use invkove,
  simplify and cleanup code. No longer move 'check behind install.
 2019-01-17 00:19:33 +01:00
Hartmut Goebel e11553f742
gnu: knewstuff: Enable test-suite. 
Without anything changed the test-suite now passes, thus can be enabled.

* gnu/package/kde-frameworks.scm(knewstuff)[arguments]<#:tests?>: Remove.
 2019-01-17 00:19:33 +01:00
Hartmut Goebel 048c557d66
gnu: kemoticons: Enable test-suite. 
Without anything changed the test-suite now passes, thus can be enabled.

* gnu/package/kde-frameworks.scm(kemoticons)[arguments]<#:tests?>: Remove.
 2019-01-17 00:19:33 +01:00
Hartmut Goebel 8c81e9f2db
gnu: kpackage: Enable test-suite. 
* gnu/package/kde-frameworks.scm(kpackage)[arguments]
  <#:tests?>: Remove. <#:phases>: Add phase 'patch-tests.
 2019-01-17 00:19:33 +01:00
Hartmut Goebel 6ca3218812
gnu: kirigami: Enable test-suite. 
The error which inhibited running the tests no longer occurs
in 5.49.0, although now no tests are found at all.  Since no tests
are found now, the phase 'check-setup can be removed, too,
and thus the 'arguments' at all.

* gnu/packages/kde-frameworks.scm(kirigami)[arguments]: Remove.
 2019-01-17 00:19:32 +01:00
Hartmut Goebel 2d4589ffb9
gnu: kcoreaddons: Enable test-suite. 
Enable running the tests and blacklist the one failing test.

* gnu/package/kde-frameworks.scm(kcoreaddons)[arguments]
  <#:tests?>: Remove. <#:phases>: Add phase 'blacklist-failing-test.
 2019-01-17 00:19:32 +01:00
Julien Lepiller 22fe911061
gnu: php: Update to 7.3.1. 
* gnu/packages/php.scm (php): Update to 7.3.1.
 2019-01-16 20:35:41 +01:00
Gabriel Hondet 4d390cad25
gnu: Add ocaml-ppxlib. 
* gnu/packages/ocaml.scm (ocaml-ppxlib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:44 +01:00
Gabriel Hondet 3f623d00a7
gnu: Add ocaml-ppx-derivers. 
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:37 +01:00
Gabriel Hondet b5bab81c10
gnu: Add ocaml-migrate-parsetree. 
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:35 +01:00
Gabriel Hondet ac06a773f5
gnu: Add ocaml-compiler-libs. 
* gnu/packages/ocaml.scm (ocaml-compiler-libs): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:33 +01:00
Gabriel Hondet 22074259d2
gnu: Add ocaml-base. 
* gnu/packages/ocaml.scm (ocaml-base): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:30 +01:00
Gabriel Hondet 7cca1fd400
gnu: Add ocaml-sexplib. 
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:28 +01:00
Gabriel Hondet 7726124ae2
gnu: Add ocaml-parsexp. 
* gnu/packages/ocaml.scm (ocaml-parsexp): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:26 +01:00
Gabriel Hondet 5fa01e8aaa
gnu: Add ocaml-sexplib0. 
* gnu/packages/ocaml.scm (ocaml-sexplib0): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2019-01-16 20:08:21 +01:00
Efraim Flashner 5f2122fb21
gnu: gnurl: Add properties for updater. 
* gnu/packages/gnunet.scm (gnurl)[properties]: New field.
 2019-01-16 19:48:02 +02:00
Efraim Flashner 96733e9417
Revert "gnu: groff: Disable relocatability." 
This causes more than 3600 packages to be rebuilt.

This reverts commit f57693e17c.
 2019-01-16 18:31:27 +02:00
Ricardo Wurmus 4eacd52cd0
gnu: Remove unnecessary module reference. 
* gnu/packages/glib.scm: Remove reference to python-xyz.
 2019-01-16 16:08:30 +01:00
Ricardo Wurmus eeb883cb0d
gnu: Move Emacs packages to new module. 
* gnu/packages/emacs.scm: Move almost all packages from here...
* gnu/packages/emacs-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/statistics.scm: Update module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus 255d1bbe77
gnu: Move dbm databases to new module. 
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus cd0322a3ef
gnu: Move sqlite to separate module. 
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
 2019-01-16 16:08:22 +01:00
Danny Milosavljevic f57693e17c
gnu: groff: Disable relocatability. 
* gnu/packages/groff.scm (groff)[arguments]<#:phases>[disable-relocatability]:
New phase.
 2019-01-16 15:15:30 +01:00
Clément Lassieur be1ce9fd31
gnu: Add prosody-smacks. 
* gnu/packages/messaging.scm (prosody-smacks): New variable.
 2019-01-16 14:26:06 +01:00
Pkill -9 a42bdd1c22
gnu: obs: Update to 22.0.3. 
* gnu/packages/video.scm (obs): Update to 22.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-16 14:07:38 +01:00
nee ab100b905f
gnu: grub: Add dependency on console-setup. 
* gnu/packages/bootloaders.scm (grub)[arguments]: In 'patch-stuff'
phase, patch 'grub-kbdcomp.in'.
[inputs]: Add CONSOLE-SETUP.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-16 14:07:38 +01:00
Efraim Flashner 39ad752cf9
gnu: kodi: Skip failing test. 
* gnu/packages/kodi.scm (kodi)[source]: Add patch.
* gnu/packages/patches/kodi-skip-test-449.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-16 11:59:35 +02:00
Pierre Neidhardt be0be3dee0
gnu: Add meld. 
* gnu/packages/patchutils.scm (meld): New variable.
 2019-01-16 10:44:23 +01:00
nee 41a54622b6
gnu: Add console-setup. 
* gnu/packages/xorg.scm (console-setup): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-15 23:16:20 +01:00
Ludovic Courtès fe77ede70a
gnu: Add bdfresize. 
* gnu/packages/xorg.scm (bdfresize): New variable.
 2019-01-15 23:16:20 +01:00
Kei Kebreau 8fb8afd98c
gnu: hyperrogue: Update to 10.5d. 
* gnu/packages/games.scm (hyperrogue): Update to 10.5d.
 2019-01-15 14:48:59 -05:00
Jelle Licht b03131902e
gnu: emacs-closql: Fix hash. 
* gnu/packages/emacs.scm (emacs-closql)[source]: Fix incorrect hash.
 2019-01-15 20:28:37 +01:00
Gabriel Hondet eac7ed195b
gnu: Add gauche. 
* gnu/packages/scheme.scm (gauche): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-15 20:24:08 +01:00
Ricardo Wurmus 4fec042b54
gnu: Move Python compression packages to new module. 
* gnu/packages/compression.scm (python-lzo, python2-lzo, python-lz4,
python2-lz4, python-lzstring, python2-lzstring, bitshuffle,
bitshuffle-for-snappy): Move variables from here...
* gnu/packages/python-compression.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/bioinformatics.scm,
gnu/packages/java-compression.scm,
gnu/packages/xorg.scm: Adjust module references.
 2019-01-15 17:45:33 +01:00
Ricardo Wurmus 22e623aef0
gnu: Add python-grpcio. 
* gnu/packages/python-xyz.scm (python-grpcio): New variable.
 2019-01-15 17:27:34 +01:00
Ricardo Wurmus 2884aac071
gnu: Add python-gast. 
* gnu/packages/python-xyz.scm (python-gast): New variable.
 2019-01-15 17:27:34 +01:00
Ricardo Wurmus 79869f8064
gnu: Add python-astunparse. 
* gnu/packages/python-xyz.scm (python-astunparse): New variable.
 2019-01-15 17:27:34 +01:00
Ricardo Wurmus 81bed4e92b
gnu: Add python-astor. 
* gnu/packages/python-xyz.scm (python-astor): New variable.
 2019-01-15 17:27:34 +01:00
Ricardo Wurmus d0446c4b55
gnu: Add python-absl-py. 
* gnu/packages/python-xyz.scm (python-absl-py): New variable.
 2019-01-15 17:27:34 +01:00
Ricardo Wurmus c22c803efc
gnu: Add protobuf-next. 
* gnu/packages/protobuf.scm (protobuf-next): New variable.
 2019-01-15 17:27:34 +01:00
Ricardo Wurmus e2931e9979
gnu: Add c-ares-next. 
* gnu/packages/adns.scm (c-ares-next): New variable.
 2019-01-15 17:27:34 +01:00
Danny Milosavljevic 9210a6c082
gnu: yosys: Update to 0.8. 
* gnu/packages/fpga.scm (yosys): Update to 0.8.
 2019-01-15 16:46:45 +01:00
Danny Milosavljevic eccd3f6d2e
gnu: arachne-pnr: Fix tests. 
* gnu/packages/fpga.scm (arachne-pnr)[arguments]: Add #:make-flags.
<#:phases>[configure]: Remove Makefile substitution.
 2019-01-15 16:46:45 +01:00
Danny Milosavljevic 72dd271cee
gnu: icestorm: Update to 0.0-2-c0cbae88a. 
* gnu/packages/fpga.scm (icestorm): Update to 0.0-2-c0cbae88a.
 2019-01-15 16:46:45 +01:00
Amin Bandali e82baf69f1
gnu: arachne-pnr: Update to 840bdfdeb. 
* gnu/packages/fpga.scm (arachne-pnr): Update to 840bdfdeb.
 2019-01-15 16:46:43 +01:00
swedebugia 357b9f9d71
gnu: Rename sshfs-fuse to sshfs. 
* gnu/packages/linux.scm (sshfs): New variable.
(sshfs-fuse): Mark as superseded.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-01-15 10:45:45 -05:00
Eric Bavier cbd833750a
gnu: mariadb: Disable "main.mysqldump" test. 
* gnu/packages/databases.scm (mariadb)[arguments]: Add "main.mysqldump" to
disabled-tests in 'adjust-tests' phase.
 2019-01-15 08:42:28 -06:00
Ricardo Wurmus 5327e912a8
gnu: Add missing module reference. 
This is a follow-up to commit 44d10b1f72.

* gnu/packages/tex.scm: Add missing reference to python-xyz.
 2019-01-15 14:58:13 +01:00
Ricardo Wurmus 44d10b1f72
gnu: Separate Python core packages from the rest. 
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
 2019-01-15 14:46:44 +01:00
Danny Milosavljevic f370509096
gnu: docker-cli: Don't install the same executable twice. 
Reported by Meiyo Peng <meiyo.peng@gmail.com>.

* gnu/packages/docker.scm (docker-cli)[arguments]<#:phases>[install]:
Don't install the same executable twice.
 2019-01-15 13:32:09 +01:00
Ricardo Wurmus c4153008f7
gnu: python-numpy-documentation: Add missing packages to texlive-union. 
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add
texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus 24d0c4d0eb
gnu: texlive-fonts-amsfonts: Install type1 fonts. 
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[native-inputs]: Fetch type1
font files.
[arguments]: Install them.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus 1574932deb
gnu: texlive-bin: Do not truncate output lines. 
* gnu/packages/tex.scm (texlive-bin)[arguments]: Change default line limits in
build phase.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus 769bb5e56b
gnu: Add texlive-luatex-luaotfload. 
* gnu/packages/tex.scm (texlive-luatex-luaotfload): New variable.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus c2a1fe4ad2
gnu: Add texlive-fonts-lm. 
* gnu/packages/tex.scm (texlive-fonts-lm): New variable.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus 4e9242aaeb
gnu: Add texlive-fonts-cm-super. 
* gnu/packages/tex.scm (texlive-fonts-cm-super): New variable.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus d7da23721a
gnu: texlive-union: Implement in terms of texlive-base. 
* gnu/packages/tex.scm (texlive-union): Inherit from texlive-base.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus bfcb9d4dbf
gnu: Add texlive-base. 
* gnu/packages/tex.scm (texlive-base): New variable.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus a1b4d62cda
gnu: texlive-bin: Add native search paths. 
* gnu/packages/tex.scm (texlive-bin)[native-search-paths]: Add specifications
for TEXMF and TEXMFCNF.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus 476f7fceb7
gnu: texlive-union: Wrap programs weakly. 
* gnu/packages/tex.scm (texlive-union)[arguments]: Wrap programs with TEXMFCNF
and TEXMF so that environment variables take precedence.
 2019-01-15 13:05:22 +01:00
Ricardo Wurmus 9c45beb4cc
gnu: texlive-latex-fontspec: Install default fontspec.cfg. 
* gnu/packages/tex.scm (texlive-latex-fontspec)[arguments]: Add build phase to
install fontspec.cfg.
 2019-01-15 13:05:22 +01:00
Efraim Flashner ebe0271aa0
gnu: opencv: Update configure flags. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Change the
configure-flags on a per-architecture basis.
 2019-01-15 13:20:14 +02:00
Ludovic Courtès 74a8b2cca1
gnu: guile-commonmark: Install .scm files in the right place. 
Previously they'd be installed in PREFIX/share/share/guile/site.

* gnu/packages/guile.scm (guile-commonmark)[modules, snippet]: New
fields.
 2019-01-15 12:05:21 +01:00
Arun Isaac 6aa4f09eb6
gnu: font-dosis: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-dosis): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
[native-inputs]: Remove unzip.
 2019-01-15 15:27:54 +05:30
Clément Lassieur 67c05f587a
gnu: python-git-review: Update to 1.27.0. 
* gnu/packages/openstack.scm (python-git-review): Update to 1.27.0.
[arguments]: Get the 'wrap-program' phase to return #t.
 2019-01-15 10:49:18 +01:00
Clément Lassieur 104e1d55c7
gnu: prosody: Update to 0.11.2. 
* gnu/packages/messaging.scm (prosody): Update to 0.11.2.
 2019-01-15 10:49:18 +01:00
Efraim Flashner 38f18309e1
gnu: youtube-dl: Update to 2019.01.10. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.10.
[source]: Update uri.
 2019-01-15 09:42:17 +02:00
Maxim Cournoyer cff1927f30
gnu: dbus: Build documentation (manpages and html). 
* gnu/packages/glib.scm (dbus)[native-inputs]: Add docbook-xml-4.4,
docbook-xsl, doxygen, xmlto, libxml2, libxslt and yelp-tools.
[outputs]: Add a "doc" output to hold the large HTML documentation.
 2019-01-14 23:30:54 -05:00
Ludovic Courtès e98c354d1a
gnu: guile-ssh: Use 'git-fetch'. 
* gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
 2019-01-14 23:43:49 +01:00
Ludovic Courtès a8b0556ea1
gnu: libssh: Update to 0.8.6. 
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
 2019-01-14 23:43:49 +01:00
Ludovic Courtès 152d4076a4
gnu: guile-json: Add 3.1.0. 
* gnu/packages/guile.scm (guile-json-3): New variable.
 2019-01-14 23:43:49 +01:00
Eric Bavier 974537fc4c
gnu: python-pycodestyle: Fix build with Python 3.7. 
* gnu/packages/patches/python-pycodestyle-stdlib-tokenize-fix.patch: New
patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycodestyle)[source]: Use it.
 2019-01-14 15:34:54 -06:00
Eric Bavier 2df4f7020d
gnu: groff: Fix doc installation. 
* gnu/packages/groff.scm (groff)[arguments]: Add 'fix-docdir phase.
 2019-01-14 15:34:54 -06:00
Ricardo Wurmus 21b41a79fe
gnu: Move Perl compression packages to new module. 
* gnu/packages/compression.scm (perl-compress-raw-bzip2,
perl-compress-raw-zlib, perl-io-compress, perl-archive-zip,
perl-archive-extract): Move from here...
* gnu/packages/perl-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm:
Adjust references.
 2019-01-14 18:12:54 +01:00
Ricardo Wurmus b80ecc5a63
gnu: texlive-latex-fontspec: Propagate l3packages. 
* gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove
texlive-latex-l3kernel.
[propagated-inputs]: Add texlive-latex-l3packages.
 2019-01-14 15:42:32 +01:00
Ricardo Wurmus 2fea7041a3
gnu: texlive-latex-l3packages: Propagate l3kernel. 
* gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move
texlive-latex-l3kernel from here...
[propagated-inputs]: ...to here.
 2019-01-14 15:39:22 +01:00
Ricardo Wurmus 73635e3f69
gnu: Add texlive-latex-changepage. 
* gnu/packages/tex.scm (texlive-latex-changepage): New variable.
 2019-01-14 14:13:21 +01:00
Ricardo Wurmus 6309d21579
gnu: Add texlive-generic-babel-german. 
* gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
 2019-01-14 14:13:21 +01:00
Ricardo Wurmus d68c8017f1
gnu: texlive-latex-base: Install configuration files. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all
configuration files.
[native-inputs]: Move texlive-generic-hyph-utf8 from here...
[propagated-inputs]: ...to here.
 2019-01-14 14:13:21 +01:00
Efraim Flashner 6c56e9c493
gnu: opencv: Use 'git-fetch'. 
* gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'.
[native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib.
Remove unzip.
[arguments]: Update custom 'unpack-submodule-sources accordingly. Update
paths in configure-flags, 'diable-broken-tests phase.
 2019-01-14 15:07:42 +02:00
Efraim Flashner 7b28210531
gnu: python-django-filter: Use 'invoke'. 
* gnu/packages/django.scm (python-django-filter)[arguments]: Use
'invoke'.
 2019-01-14 15:07:42 +02:00
Efraim Flashner 8e21fa0bd3
gnu: opencv: Loosen test suite failures. 
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-14 15:07:42 +02:00
Efraim Flashner fdeb2def6a
gnu: opencv: Update configure flags. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Don't use
precompiled headers. Enable all available CPU optimizations.
 2019-01-14 15:07:42 +02:00
Efraim Flashner b5baf9529e
gnu: opencv: Don't hardcode build directories. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Change
OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd'
instead of hardcoding the build path.
 2019-01-14 15:07:41 +02:00
Efraim Flashner 6949f45c10
gnu: opencv: Fix building on non-x86_64 systems. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Add
configure-flag to disable carotene. Don't require x86_64 CPU
except on x86_64. Fix typo.
 2019-01-14 15:07:41 +02:00
Efraim Flashner c5c42f0a9c
gnu: gnurl: Update to 7.63.0. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
 2019-01-14 13:57:49 +02:00
Clément Lassieur 6e46be066a
gnu: emacs-pass: Update to 1.8. 
* gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
 2019-01-14 12:33:46 +01:00
Rutger Helling 478040d4fb
gnu: dosbox: Update to 0.74-2. 
* gnu/packages/emulators.scm (dosbox): Update to 0.74-2.
[arguments]: Use invoke in 'autogen.sh phase.
 2019-01-14 09:08:04 +01:00
Mark H Weaver 72b308364f
gnu: linux-libre: Update to 4.20.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2.
(%linux-libre-hash): Update hash.
 2019-01-14 01:29:47 -05:00
Mark H Weaver 8fa75a2266
gnu: linux-libre@4.19: Update to 4.19.15. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15.
(%linux-libre-4.19-hash): Update hash.
 2019-01-14 01:28:02 -05:00
Mark H Weaver 8b2aabd9d9
gnu: linux-libre@4.14: Update to 4.14.93. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93.
(%linux-libre-4.14-hash): Update hash.
 2019-01-14 01:26:21 -05:00
Mark H Weaver e724e1543a
gnu: linux-libre@4.9: Update to 4.9.150. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
 2019-01-14 01:25:28 -05:00
Mark H Weaver 0dd2a4f324
gnu: linux-libre@4.4: Update to 4.4.170. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
 2019-01-14 01:24:40 -05:00
Christopher Baines a988393997
gnu: python-2.7: Fix build. 
The -j flag is passed in through #:make-flags and EXTRATESTOPTS. This is
combined with the TESTOPTS, and in Python 2, that includes the -l flag by
default.

The -l flag, is for finding memory leaks in tests, and is incompatible with
the -j flag, and the build previously failed at the start of the 'check
phase. Therefore, remove the -l flag from the Python 2 testsuite, as it
doesn't sound like a useful thing to do when building the package for Guix.

* gnu/packages/python.scm (python-2.7): Add 'remove-findleaks-from-testopts
phase.
 2019-01-13 22:47:29 +00:00
Gabriel Hondet 64d25f0be2
gnu: Add ocaml-merlin. 
* gnu/packages/ocaml.scm (ocaml-merlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-13 23:30:15 +01:00
Gabriel Hondet cc353cc067
gnu: Add emacs-tldr. 
* gnu/packages/emacs.scm (emacs-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-13 23:30:15 +01:00
Christopher Baines 24a23bea20
gnu: Add python-miniboa. 
python2-miniboa is required for the linkchecker testsuite.

* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
 2019-01-13 20:47:40 +00:00
Christopher Baines c4aa1ebc81
gnu: python-pillow: Update to 5.4.1. 
I'm looking at this, as this release fixes an issue with the Django testsuite:

https://github.com/python-pillow/Pillow/pull/3525

* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
 2019-01-13 17:09:52 +00:00
Ricardo Wurmus 14bba460ab
gnu: r-biocgenerics: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus 7097c7009d
gnu: r-annotate: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran. 
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
 2019-01-13 13:04:18 +01:00
Efraim Flashner d691e96657
gnu: conda: Use 'invoke'. 
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
 2019-01-13 12:44:03 +02:00
Efraim Flashner 675e7bba3e
gnu: python-conda: All phases return #t. 
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
 2019-01-13 12:44:03 +02:00
Efraim Flashner e227f248a6
gnu: python-conda: Fix test suite. 
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
 2019-01-13 12:44:00 +02:00
Ricardo Wurmus 82acd43cbd
gnu: Add r-raster. 
* gnu/packages/cran.scm (r-raster): New variable.
 2019-01-13 11:14:44 +01:00
Ricardo Wurmus 104e7c3c92
gnu: r-ggformula: Update to 0.9.1. 
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
 2019-01-13 11:14:43 +01:00
Ricardo Wurmus 3fe45dda0a
gnu: r-tibble: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
 2019-01-13 11:14:43 +01:00
Ricardo Wurmus 523762e332
gnu: r-psych: Update to 1.8.12. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
 2019-01-13 11:14:43 +01:00
Efraim Flashner ad79ae7e2d
gnu: bitshuffle-for-snappy: Inherit package arguments. 
* gnu/packages/compression.scm (bitshuffle-for-snappy)[arguments]:
Inherit package arguments from bitshuffle. Always skip tests.
 2019-01-13 11:50:55 +02:00
Efraim Flashner d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux. 
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
 2019-01-13 11:31:04 +02:00
Rutger Helling 15d2cebf45
gnu: wine-staging: Update to 4.0-rc6. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
 2019-01-13 10:14:49 +01:00
Ricardo Wurmus c8d8925647
gnu: Sort package module references in (gnu packages graphviz). 
* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
 2019-01-13 10:07:06 +01:00
Ricardo Wurmus 8b1c0dab45
gnu: Add python-pygraphviz. 
* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
 2019-01-13 10:07:06 +01:00
Ricardo Wurmus 9e7f55de45
gnu: Add python-doctest-ignore-unicode. 
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
 2019-01-13 10:07:06 +01:00
Ricardo Wurmus c016e390bf
gnu: Add graphviz-2.38. 
* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
 2019-01-13 10:07:06 +01:00
Marius Bakke 6764f94317
Merge branch 'master' into staging 2019-01-13 01:40:04 +01:00
Marius Bakke 1710ffa4c7
gnu: sudo: Update to 1.8.27. 
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
 2019-01-13 01:25:18 +01:00
Marius Bakke cb3e055f86
gnu: libassuan: Update to 2.5.2. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
 2019-01-13 01:25:17 +01:00
Marius Bakke 66470a5ad0
gnu: libgxps: Update to 0.3.1. 
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
 2019-01-13 01:25:17 +01:00
Marius Bakke ad55c19211
gnu: libqmi: Update to 1.22.0. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke de261ace27
gnu: libmbim: Update to 1.18.0. 
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke 8bcae1e60c
gnu: libsodium: Update to 1.0.17. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
 2019-01-13 01:25:17 +01:00
Marius Bakke 0b014776c9
gnu: exempi: Update to 2.5.0. 
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke 00262db23a
gnu: seabios: Update to 1.12.0. 
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke b2e765de4c
gnu: httpd: Update to 2.4.37. 
* gnu/packages/web.scm (httpd): Update to 2.4.37.
 2019-01-13 01:25:17 +01:00
Marius Bakke 1d7fbe0947
gnu: nasm: Update license. 
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
 2019-01-13 01:25:16 +01:00
Marius Bakke 80459f5a21
gnu: nasm: Update home page. 
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
 2019-01-13 01:25:16 +01:00
Marius Bakke 9f1448b74a
gnu: libgphoto2: Update to 2.5.22. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
 2019-01-13 01:25:16 +01:00
Marius Bakke ef61969c52
gnu: re2: Update to 2019-01-01. 
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
 2019-01-13 01:25:16 +01:00
Marius Bakke c06ef010e3
gnu: libsecret: Update to 0.18.7. 
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL.  Add GETTEXT-MINIMAL.
 2019-01-13 01:25:16 +01:00
Marius Bakke 48d5818a0e
gnu: fluidsynth: Update to 2.0.3. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
 2019-01-13 01:25:16 +01:00
Marius Bakke bf135622bd
gnu: rofi: Update to 1.5.2. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
 2019-01-13 01:25:16 +01:00
Marius Bakke 2bb187c484
gnu: xscreensaver: Update to 5.42. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
 2019-01-13 01:25:16 +01:00
Marius Bakke 0c4cee13b2
gnu: libcmis: Update to 0.5.2. 
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases.  Don't pass "--disable-werror" in #:configure-flags.
 2019-01-13 01:25:15 +01:00
Marius Bakke 48a51af9d2
gnu: http-parser: Update to 2.9.0. 
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
 2019-01-13 01:25:15 +01:00
Marius Bakke 304db09257
gnu: http-parser: Download from git. 
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
 2019-01-13 01:25:15 +01:00
Marius Bakke 9c2094785d
gnu: libetonyek: Adjust inputs. 
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
 2019-01-13 01:25:15 +01:00
Marius Bakke 7c3acfcb69
gnu: libetonyek: Update to 0.1.9. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
 2019-01-13 01:25:15 +01:00
Marius Bakke b1d2e0b4e0
gnu: libcdr: Update to 0.1.5. 
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
 2019-01-13 01:25:15 +01:00
Kei Kebreau 5b9c2690af
gnu: tintin++: Update to 2.01.5. 
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
 2019-01-12 18:37:38 -05:00
Ricardo Wurmus c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus c86fc96987
gnu: r-inspect: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus cad6fb2dec
gnu: Add r-plgem. 
* gnu/packages/bioconductor.scm (r-plgem): New variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 45dcd7dcfd
gnu: r-rots: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 0b469ee225
gnu: r-glimma: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 7f2b1c4af0
gnu: r-goseq: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus add2b19561
gnu: r-chippeakanno: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus c476edc2cd
gnu: r-rtracklayer: Update to 1.42.1. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 1e107b0960
gnu: r-scater: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 0f268bb275
gnu: r-singlecellexperiment: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus a0224bd4f6
gnu: r-rhdf5lib: Update to 1.4.2. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 40561d0249
gnu: r-hdf5array: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus ad10b3979d
gnu: r-qvalue: Update to 2.14.1. 
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 19cacb5a2d
gnu: r-gviz: Update to 1.26.4. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus c80595935d
gnu: r-biovizbase: Update to 1.30.1. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 27194effd7
gnu: r-ensembldb: Update to 2.6.3. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 43931ff72f
gnu: r-dirichletmultinomial: Update to 1.24.1. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 15d89fe9f8
gnu: r-gage: Update to 2.32.1. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 4615cf9f1a
gnu: r-annotationhub: Update to 2.14.2. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus ab4a862ab8
gnu: r-edaseq: Update to 2.16.3. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3.
[propagated-inputs]: Add r-biocmanager.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 3bdc41b352
gnu: r-deseq: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 9abf344f8b
gnu: r-msnid: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 880ed11e9f
gnu: r-msnbase: Update to 2.8.3. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.3.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 6451af78e1
gnu: r-mzid: Update to 1.20.1. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus a4f038dc97
gnu: r-mzr: Update to 2.16.1. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 46508c3a92
gnu: r-sva: Update to 3.30.1. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus c20426ec5c
gnu: r-methylkit: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 5c72ebafeb
gnu: r-copywriter: Update to 2.14.1. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 86162c767e
gnu: r-rhdf5: Update to 2.26.2. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.2.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 4c7b9222dd
gnu: r-tximport: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 4bfde52178
gnu: r-genomicalignments: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.1.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 1fa12b2f06
gnu: r-biostrings: Update to 2.50.2. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.2.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus d4fc834cf7
gnu: r-biocparallel: Update to 1.16.5. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.5.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 52c977a05b
gnu: r-limma: Update to 3.38.3. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.3.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 3fd48846eb
gnu: r-variantannotation: Update to 1.28.8. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.8.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus a619850930
gnu: r-edger: Update to 3.24.3. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.3.
 2019-01-12 23:35:17 +01:00
Ricardo Wurmus 00f105fe20
gnu: r-biocviews: Update to 1.50.10. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.10.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 9c1b2b2ae0
gnu: r-systempiper: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.1.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 3b8c884285
gnu: r-rbgl: Update to 1.58.1. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.1.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus ffe16ef33c
gnu: r-dexseq: Update to 1.28.1. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.1.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus f7e95c50b8
gnu: r-deseq2: Update to 1.22.2. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.2.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus feb561f721
gnu: r-scran: Update to 1.10.2. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.2.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus fd7301676e
gnu: r-sjplot: Update to 2.6.2. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.2.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus e45f4a4dab
gnu: r-sjmisc: Update to 2.7.7. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.7.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 5e8282a4a0
gnu: r-rmpi: Update to 0.6-9. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 80c4e75b87
gnu: r-seqminer: Update to 7.1. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 7.1.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 3bc0667f3c
gnu: r-bookdown: Update to 0.9. 
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.9.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus c3e5b456be
gnu: r-protviz: Update to 0.4.0. 
* gnu/packages/cran.scm (r-protviz): Update to 0.4.0.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 209e504bb1
gnu: r-ontologyindex: Update to 2.5. 
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.5.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus e041740289
gnu: r-chemometricswithr: Update to 0.1.13. 
* gnu/packages/cran.scm (r-chemometricswithr): Update to 0.1.13.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 9ad5f4ba19
gnu: r-grimport: Update to 0.9-1.1. 
* gnu/packages/cran.scm (r-grimport): Update to 0.9-1.1.
 2019-01-12 23:35:16 +01:00
Ricardo Wurmus 16d296bbd1
gnu: r-shades: Update to 1.3.1. 
* gnu/packages/cran.scm (r-shades): Update to 1.3.1.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 6eab52e0dd
gnu: r-ggeffects: Update to 0.8.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.8.0.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus de7631b278
gnu: r-slam: Update to 0.1-44. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-44.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 2652e2534f
gnu: r-refgenome: Update to 1.7.3.1. 
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.3.1.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus f0867a0e8b
gnu: r-findpython: Update to 1.0.4. 
* gnu/packages/cran.scm (r-findpython): Update to 1.0.4.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 12502bf4e8
gnu: r-prediction: Update to 0.3.6.1. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.1.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus fbd263cd4a
gnu: r-abn: Update to 1.3. 
* gnu/packages/cran.scm (r-abn): Update to 1.3.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1b1444012b
gnu: r-sjstats: Update to 0.17.3. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.3.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 9df469a1d4
gnu: r-emmeans: Update to 1.3.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.1.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1afe56444e
gnu: r-glmmtmb: Update to 0.2.3. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 0.2.3.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1417d5f1d5
gnu: r-rio: Update to 0.5.16. 
* gnu/packages/cran.scm (r-rio): Update to 0.5.16.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 962304c31c
gnu: r-arules: Update to 1.6-2. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-2.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus f2fc34f241
gnu: r-fnn: Update to 1.1.2.2. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.2.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus f0fe1a5a45
gnu: r-shinyace: Update to 0.3.3. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.3.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 5f1f11049f
gnu: r-cubature: Update to 2.0.3. 
* gnu/packages/cran.scm (r-cubature): Update to 2.0.3.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 7abb15f2bb
gnu: r-tseries: Update to 0.10-46. 
* gnu/packages/cran.scm (r-tseries): Update to 0.10-46.
 2019-01-12 23:35:15 +01:00
Ricardo Wurmus 9d83132757
gnu: r-statnet-common: Update to 4.2.0. 
* gnu/packages/cran.scm (r-statnet-common): Update to 4.2.0.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 7e9e9c9c46
gnu: r-tinytex: Update to 0.10. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.10.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus fc00a1f0fc
gnu: r-pillar: Update to 1.3.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.3.1.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 111516f9d6
gnu: r-gclus: Update to 1.3.2. 
* gnu/packages/cran.scm (r-gclus): Update to 1.3.2.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus ed46a05c75
gnu: r-laeken: Update to 0.5.0. 
* gnu/packages/cran.scm (r-laeken): Update to 0.5.0.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus fc74de42da
gnu: r-ddalpha: Update to 1.3.8. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.8.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 221b3b164d
gnu: r-rmysql: Update to 0.10.16. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.16.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 1c6d199ee8
gnu: r-mitml: Update to 0.3-7. 
* gnu/packages/cran.scm (r-mitml): Update to 0.3-7.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 5703991841
gnu: r-recipes: Add missing input. 
* gnu/packages/cran.scm (r-recipes)[propagated-inputs]: Add r-withr.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 77f97229c9
gnu: r-dimred: Add missing input. 
* gnu/packages/cran.scm (r-dimred)[propagated-inputs]: Add r-magrittr.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 8f88701491
gnu: r-lava: Update to 1.6.4. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.4.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 397dba01c6
gnu: r-powerlaw: Update to 0.70.2. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.2.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 72c4987506
gnu: r-circlize: Update to 0.4.5. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.5.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 422dea1774
gnu: r-ps: Update to 1.3.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.3.0.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus dcf89cc0cf
gnu: r-haven: Update to 2.0.0. 
* gnu/packages/cran.scm (r-haven): Update to 2.0.0.
 2019-01-12 23:35:14 +01:00
Ricardo Wurmus 69aad34ae0
gnu: r-feather: Update to 0.3.2. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.2.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 1add168ab5
gnu: r-htmltable: Update to 1.13.1. 
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.1.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 37349c717e
gnu: r-httpuv: Update to 1.4.5.1. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.4.5.1.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 0c025a7f79
gnu: r-clipr: Update to 0.5.0. 
* gnu/packages/cran.scm (r-clipr): Update to 0.5.0.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 2e4fc4ac62
gnu: r-caret: Update to 6.0-81. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-81.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus aa72d7f7f5
gnu: r-quantreg: Update to 5.38. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.38.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 9b7df80b9b
gnu: r-rcppeigen: Update to 0.3.3.5.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.5.0.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus bcc17f7f11
gnu: r-rrcov: Update to 1.4-7. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-7.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 70ee5ab137
gnu: r-cowplot: Update to 0.9.4. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 7213ef07c6
gnu: r-rann: Update to 2.6.1. 
* gnu/packages/statistics.scm (r-rann): Update to 2.6.1.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 2c8594d963
gnu: r-sfsmisc: Update to 1.1-3. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 54ebdf6f74
gnu: r-rmarkdown: Update to 1.11. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11.
[propagated-inputs]: Remove r-rprojroot.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus fb45934202
gnu: r-rstudioapi: Update to 0.9.0. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 8f49d99a84
gnu: r-git2r: Update to 0.24.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus c12e429348
gnu: r-httr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.0.
 2019-01-12 23:35:13 +01:00
Ricardo Wurmus 02c89c5812
gnu: r-commonmark: Update to 1.7. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.7.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus fe8c44502b
gnu: r-checkmate: Update to 1.9.0. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus ca4861c602
gnu: r-backports: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.3.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 23347dc353
gnu: r-dbplyr: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus f12ed3664d
gnu: r-tibble: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0.
[propagated-inputs]: Add r-fansi and r-pkgconfig.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus c668a95861
gnu: r-rlang: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 495866a9d7
gnu: r-knitr: Update to 1.21. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.21.
[propagated-inputs]: Add r-xfun.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus bf3aded0cf
gnu: r-markdown: Update to 0.9. 
* gnu/packages/statistics.scm (r-markdown): Update to 0.9.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus eae93bd3f2
gnu: r-bh: Update to 1.69.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus b6e27673e6
gnu: r-pheatmap: Update to 1.0.12. 
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus ca2bc7e037
gnu: r-mgcv: Update to 1.8-26. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 60f1bce09f
gnu: r-codetools: Update to 0.2-16. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 3dbd87f504
gnu: r-class: Update to 7.3-15. 
* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 35cf4874cc
gnu: r-survival: Update to 2.43-3. 
* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 11a36548d9
gnu: r-argparse: Update to 2.0.0. 
* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus 527c605598
gnu: r-callr: Update to 3.1.1. 
* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
 2019-01-12 23:35:12 +01:00
Ricardo Wurmus b140569e18
gnu: r-readxl: Update to 1.2.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 0aad198e2b
gnu: r-pracma: Update to 2.2.2. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 0e87bf0177
gnu: r-processx: Update to 3.2.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 2766d3436a
gnu: r-sjlabelled: Update to 1.0.16. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 813d9c51e3
gnu: r-broom: Update to 0.5.1. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 25c67ecfc6
gnu: Add r-generics. 
* gnu/packages/cran.scm (r-generics): New variable.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 646e1ef059
gnu: r-curl: Update to 3.3. 
* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus ef91530362
gnu: r-readr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 48102ce123
gnu: r-mvabund: Update to 4.0.1. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus 04a18a81ae
gnu: r-writexl: Update to 1.1. 
* gnu/packages/cran.scm (r-writexl): Update to 1.1.
 2019-01-12 23:35:11 +01:00
Ricardo Wurmus a2315c6702
gnu: r-jsonlite: Update to 1.6. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
 2019-01-12 23:35:11 +01:00
Kei Kebreau ea600ff709
gnu: python-pillow: Update homepage. 
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
 2019-01-12 16:39:26 -05:00
Kei Kebreau acbf312573
gnu: python-pillow: Update to 5.4.0 
* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
 2019-01-12 16:38:36 -05:00
Ricardo Wurmus 146c6b62bf
gnu: Sort package modules in (gnu packages guile). 
* gnu/packages/guile.scm: Sort list of gnu/packages modules.
 2019-01-12 12:14:31 +01:00
Ricardo Wurmus 7d8baff97b
gnu: impressive: Update to 0.12.0. 
* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
 2019-01-12 12:14:31 +01:00
Ricardo Wurmus 24155bf40d
gnu: Move Java compression packages to new module. 
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
 2019-01-12 12:14:28 +01:00
guy fleury iteriteka 1704367719
gnu: Add Bochs. 
* gnu/packages/virtualization.scm (bochs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-01-11 17:09:20 -05:00
Leo Famulari 81c64748ba
gnu: Stellarium: Update to 0.18.3. 
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
 2019-01-11 17:07:55 -05:00
Pierre Neidhardt 1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found. 
* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
 2019-01-11 19:48:00 +01:00
Pierre Neidhardt e0fa641380
gnu: opendht: Use jsoncpp and restbed. 
* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
 2019-01-11 19:48:00 +01:00
Pierre Neidhardt 362fba83dd
gnu: Add restbed. 
* gnu/packages/networking.scm (restbed): New variable.
 2019-01-11 19:48:00 +01:00
Pierre Neidhardt 50e1843b3a
gnu: libupnp: Update to 1.6.25. 
* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
 2019-01-11 19:48:00 +01:00
Hartmut Goebel 46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs. 
Using LIBRARY_PATH was introduced in
16b8aff85b, but is wrong since
this variable is used by the compiler (gcc) at link time.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: Change
  LIBRARY_PATH to KDEINIT5_LIBRARY_PATH.
* gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]:
  New field.
 2019-01-11 16:35:52 +01:00
Jelle Licht 5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0." 
This change should be applied once we update our magit package.

This reverts commit b96f0e6ff9.
 2019-01-11 13:32:31 +01:00
Gabriel Hondet 88d7101798
gnu: Add emacs-general. 
[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-11 12:14:38 +01:00
Rutger Helling cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
 2019-01-11 11:15:13 +01:00
Ricardo Wurmus e7c6bc45ed
gnu: jamm: Remove broken "build" phase. 
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
 2019-01-11 06:08:43 +01:00
Leo Famulari adf0b482eb
gnu: gexiv2: Update to 0.10.10. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
 2019-01-10 18:45:41 -05:00
Ricardo Wurmus d4d9a1ece0
gnu: Update texlive packages. 
* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
 2019-01-10 22:43:09 +01:00
Kei Kebreau c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882]. 
* gnu/packages/irc.scm (irssi): Update to 1.1.2.
 2019-01-10 16:05:42 -05:00
Danny Milosavljevic ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls. 
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
 2019-01-10 21:29:53 +01:00
Pierre Neidhardt 6a6e5d84da
gnu: opendht: Update to 1.8.1. 
* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
 2019-01-10 21:09:06 +01:00
Pierre Neidhardt 6fe6840dab
gnu: Add libsecp256k1. 
* gnu/packages/crypto.scm (libsecp256k1): New variable.
 2019-01-10 21:09:06 +01:00
Pierre Neidhardt 35ac66eec1
gnu: crypto++: Update to 8.0.0. 
* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
 2019-01-10 21:09:06 +01:00
Nam Nguyen dbd346ae88
gnu: sct: Correct license. 
* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-10 14:59:23 +01:00
Tim Gesthuizen 7d4b3e1e2b
gnu: Add pwsafe 
* gnu/packages/password-utils.scm (pwsafe): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-10 14:59:22 +01:00
Rutger Helling 67ff2bdf61
gnu: vulkan-headers: Update to 1.1.97. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.97.
[source]: Use git-fetch.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
[source]: Use git-fetch.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
[source]: Use git-fetch.
 2019-01-10 11:44:54 +01:00
Rutger Helling 394207c1ee
gnu: Add missing copyright line. 
* gnu/packages/video.scm: Add missing copyright line for commit 20b4aa6.
 2019-01-10 08:59:44 +01:00
Rutger Helling 1d591432c7
gnu: wlstream: Fix indentation. 
* gnu/packages/video.scm (wlstream): Fix indentation.
 2019-01-10 08:53:36 +01:00
Rutger Helling 20b4aa6bab
gnu: Add wlstream. 
* gnu/packages/video.scm (wlstream): New variable.
 2019-01-10 08:41:03 +01:00
Rutger Helling 1f61cc102e
gnu: ffmpeg: Add libdrm support. 
* gnu/packages/video.scm (ffmpeg): Add libdrm support.
 2019-01-10 08:20:39 +01:00
Danny Milosavljevic 6b6a25d4d2
gnu: docker: Fix more paths. 
* gnu/packages/docker.scm (docker)[inputs]: Add dbus, git.
[arguments]<#:phases>[patch-paths]: Use them.
 2019-01-10 05:40:53 +01:00
Mark H Weaver 60893e5c84
gnu: linux-libre: Update to 4.20.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.1.
(%linux-libre-hash): Update hash.
 2019-01-09 23:00:07 -05:00
Mark H Weaver f7ed0b1db5
gnu: linux-libre@4.19: Update to 4.19.14. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.14.
(%linux-libre-4.19-hash): Update hash.
 2019-01-09 23:00:05 -05:00
Mark H Weaver 166c6ad39c
gnu: linux-libre@4.14: Update to 4.14.92. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.92.
(%linux-libre-4.14-hash): Update hash.
 2019-01-09 23:00:03 -05:00
Mark H Weaver c37f52e3be
gnu: linux-libre@4.9: Update to 4.9.149. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.149.
 2019-01-09 23:00:00 -05:00
Mark H Weaver 28f6b27543
gnu: linux-libre: Enable pressure stall information. 
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Enable CONFIG_PSI.
 2019-01-09 22:59:58 -05:00
Danny Milosavljevic 8cd958608c
gnu: docker: Disable tests requiring elevated permissions. 
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[delete-failing-tests]:
Disable tests requiring elevated permissions.
 2019-01-10 04:46:29 +01:00
Danny Milosavljevic 8b487bf84f
gnu: containerd: Fix more paths. 
* gnu/packages/docker.scm (containerd)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
 2019-01-10 04:34:57 +01:00
Danny Milosavljevic 58adcaa19f
gnu: docker: Fix more paths. 
* gnu/packages/docker.scm (docker)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
 2019-01-10 04:33:47 +01:00
Danny Milosavljevic 65a7e35cb5
gnu: docker: Substitute LookPath of literals generally. 
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Substitute LookPath of literals generally.
 2019-01-10 03:12:32 +01:00
Danny Milosavljevic e9b316453e
gnu: Add docker-cli. 
* gnu/packages/docker.scm (docker-cli): New variable.
 2019-01-10 03:01:12 +01:00
Danny Milosavljevic f87ea24a82
gnu: Add docker. 
* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-10 02:49:14 +01:00
Leo Famulari fc51c28ae8
gnu: Blender: Update to a beta release of 2.80. 
Fixes <https://bugs.gnu.org/33608> and <https://bugs.gnu.org/33882>.

* gnu/packages/graphics.scm (blender): Update to 2.80-beta-0.3c3d80e.
[source]: Fetch from the Git repository.
[inputs]: Use OpenJPEG 2. Add Numpy.
[arguments]: Specify the location of Numpy. Remove some configure flags that are
no longer used. Comment out the 'fix-broken-import' phase because the
file it patches doesn't exist in the Git sources.
[description]: Add a warning about the beta status.
 2019-01-09 18:54:16 -05:00
Jelle Licht b96f0e6ff9
gnu: emacs-ghub: Update to 3.2.0. 
* gnu/packages/emacs.scm (emacs-ghub): Update to 3.2.0.
[source]: Use 'git-fetch'.
[propagated-inputs]: Add emacs-dash, emacs-graphql,
emacs-let-alist, emacs-treepy.
 2019-01-09 22:40:32 +01:00
Jelle Licht 9bc7dd62b4
gnu: emacs-magit-popup: Update to 2.12.5. 
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.5.
 2019-01-09 22:40:25 +01:00
Jelle Licht 8d59ef68cb
gnu: emacs-with-editor: Update to 2.8.0. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.8.0.
[source]: Use 'git-fetch'.
 2019-01-09 22:40:13 +01:00
Jelle Licht 5b07f06804
gnu: Add emacs-graphql. 
* gnu/packages/emacs.scm (emacs-graphql): New variable.
 2019-01-09 22:40:02 +01:00
Jelle Licht abb8dff054
gnu: Add emacs-treepy. 
* gnu/packages/emacs.scm (emacs-treepy): New variable.
 2019-01-09 22:38:22 +01:00
Jelle Licht 56c50c71b5
gnu: emacs-emacsql: Update to 3.0.0. 
* gnu/packages/emacs.scm (emacs-emacsql): Update to 3.0.0.
[source]: Use 'git-fetch'.
[arguments]: Remove unnecessary fix.
 2019-01-09 22:38:06 +01:00
Jelle Licht d4e915f9b5
gnu: emacs-closql: Update to 1.0.0. 
* gnu/packages/emacs.scm (emacs-closql): Update to 1.0.0.
[source]: Use 'git-fetch'.
 2019-01-09 22:37:52 +01:00
Leo Famulari 1bb9969f83
gnu: tzdata: Update to 2018i. 
* gnu/packages/base.scm (tzdata): Update to 2018i.
(tzdata-for-tests): Keep at version 2018g.
 2019-01-09 16:08:18 -05:00
Leo Famulari 817e09c174
gnu: Django: Update to 1.11.18 [fixes CVE-2019-3498]. 
* gnu/packages/django.scm (python-django, python2-django): Update to 1.11.18.
 2019-01-09 15:44:36 -05:00
Leo Famulari e82c98abe9
gnu: aria2: Fix CVE-2019-3500. 
* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (aria2)[source]: Use it.
 2019-01-09 15:38:19 -05:00
Leo Famulari 45ee3fde87
gnu: hashcat: Update to 5.1.0. 
* gnu/packages/password-utils.scm (hashcat): Update to 5.1.0.
 2019-01-09 14:05:20 -05:00
Danny Milosavljevic f73b7bf6e2
gnu: fasm: Update comments. 
* gnu/packages/assembly.scm (fasm): Update comments.
 2019-01-09 19:33:28 +01:00
Danny Milosavljevic cb95e79f14
gnu: fasm: Fix grammatical errors in description. 
* gnu/packages/assembly.scm (fasm)[description]: Modify.
 2019-01-09 19:33:27 +01:00
Danny Milosavljevic 1bde3d2cbf
gnu: Add dev86. 
* gnu/packages/assembly.scm (dev86): New variable.
 2019-01-09 19:33:27 +01:00
Efraim Flashner ab7aa06cac
gnu: python-pygit2: Update to 0.27.3. 
* gnu/packages/python.scm (python-pygit2): Update to 0.27.3.
[arguments]: Add custom phase to compile with cffi support. Add custom
phase to not require specific versions of python-cffi.
[native-inputs]: Add python-pytest.
 2019-01-09 20:25:50 +02:00
Ludovic Courtès 1b504b498a
gnu: libgit2: Update to 0.27.7. 
* gnu/packages/version-control.scm (libgit2): Update to 0.27.7.
 2019-01-09 18:47:57 +01:00
Tim Gesthuizen 037c3b0ea2
gnu: emacs-irony-mode: Remove propagated input 
emacs-irony-mode finds its server binary because its a propagated input and is
in the path. We can substitute the variable `irony-server-install-prefix` to
not propagate the input and keep the binary isolated from the user.

* gnu/packages/emacs.scm (emacs-irony-mode):
[propagated-inputs] Remove propagated inputs
[inputs] Add emacs-irony-mode-server
[arguments] Add phase substituting the variable of the server path

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Tim Gesthuizen ecf7e4ea43
gnu: emacs-ggtags: Don't require GNU Global in path 
emacs-ggtags relies on the GNU Global tools (global and gtags) to be available
in the path. This way it will grab some random executable if it will find
executables at all.
This is fixed by setting the prefix to GNU Global in the store. This way
emacs-ggtags will use specific deterministic executables.

* gnu/packages/emacs.scm (emacs-ggtags):
[inputs]: Add GNU Global to the inputs
[arguments]: Add a phase for substituting the right path to the executables

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Vasile Dumitrascu b2a5ef2e94
gnu: e2fsprogs: Update to 1.44.5. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Vasile Dumitrascu 4287bd19c7
gnu: bind: Update to 9.12.3-P1. 
* gnu/packages/dns.scm (bind): Update to 9.12.3-P1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Brett Gilio 25a0ffbf27
gnu: emacs-md4rd: Update to c55512c. 
* gnu/packages/emacs.scm (emacs-md4rd): Update to c55512c.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:56 +01:00
Ricardo Wurmus cba08f60a1
gnu: Add r-mcmc. 
* gnu/packages/cran.scm (r-mcmc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 39274ab4d9
gnu: Add r-parcor. 
* gnu/packages/cran.scm (r-parcor): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 0af9616d91
gnu: Add r-huge. 
* gnu/packages/cran.scm (r-huge): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 879a15203b
gnu: Add r-ppls. 
* gnu/packages/cran.scm (r-ppls): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 17932a0f63
gnu: Add r-epi. 
* gnu/packages/cran.scm (r-epi): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 728012dae8
gnu: Add r-etm. 
* gnu/packages/cran.scm (r-etm): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 7aeec0cf37
gnu: Add r-cmprsk. 
* gnu/packages/cran.scm (r-cmprsk): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus e3c0e3e360
gnu: Add r-protviz. 
* gnu/packages/cran.scm (r-protviz): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus fe4e9f0349
gnu: Add r-rbamtools. 
* gnu/packages/cran.scm (r-rbamtools): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus e50722c8e6
gnu: Add r-genenet. 
* gnu/packages/cran.scm (r-genenet): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 6a5bfe09eb
gnu: Add r-longitudinal. 
* gnu/packages/cran.scm (r-longitudinal): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 1ea708af8c
gnu: Add r-survivalroc. 
* gnu/packages/cran.scm (r-survivalroc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus afc0d8158b
gnu: Add r-bootstrap. 
* gnu/packages/cran.scm (r-bootstrap): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 4fcbd7eaf3
gnu: Add r-rmeta. 
* gnu/packages/cran.scm (r-rmeta): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus c2d6e866ac
gnu: Add r-drc. 
* gnu/packages/cran.scm (r-drc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 99c164a5c7
gnu: Add r-spatialextremes. 
* gnu/packages/cran.scm (r-spatialextremes): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 32725458b7
gnu: Add r-fields. 
* gnu/packages/cran.scm (r-fields): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 90104ecd66
gnu: Add r-spam. 
* gnu/packages/cran.scm (r-spam): New variable.
 2019-01-09 17:13:51 +01:00
Ricardo Wurmus f51dcc275e
gnu: Add r-dotcall64. 
* gnu/packages/cran.scm (r-dotcall64): New variable.
 2019-01-09 17:13:49 +01:00
Ricardo Wurmus 658b2b62cb
gnu: Add r-assertive. 
* gnu/packages/cran.scm (r-assertive): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39231abf4d
gnu: Add r-assertive-data. 
* gnu/packages/cran.scm (r-assertive-data): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39ef8e097b
gnu: Add r-assertive-data-uk. 
* gnu/packages/cran.scm (r-assertive-data-uk): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 6d3702e5ce
gnu: Add r-assertive-data-us. 
* gnu/packages/cran.scm (r-assertive-data-us): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 66d0a0a706
gnu: Add r-assertive-strings. 
* gnu/packages/cran.scm (r-assertive-strings): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 29d9a2affb
gnu: Add r-assertive-datetimes. 
* gnu/packages/cran.scm (r-assertive-datetimes): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 50ce8b1e2c
gnu: Add r-assertive-code. 
* gnu/packages/cran.scm (r-assertive-code): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 1f0a761a14
gnu: Add r-assertive-files. 
* gnu/packages/cran.scm (r-assertive-files): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 5e3bd35506
gnu: Add r-assertive-types. 
* gnu/packages/cran.scm (r-assertive-types): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus dcafcfb4fd
gnu: Add r-assertive-reflection. 
* gnu/packages/cran.scm (r-assertive-reflection): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus c358b5d418
gnu: Add r-assertive-models. 
* gnu/packages/cran.scm (r-assertive-models): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 905aa46ae5
gnu: Add r-assertive-matrices. 
* gnu/packages/cran.scm (r-assertive-matrices): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2da2d2f605
gnu: Add r-assertive-sets. 
* gnu/packages/cran.scm (r-assertive-sets): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus dac9c1f604
gnu: Add r-assertive-numbers. 
* gnu/packages/cran.scm (r-assertive-numbers): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 4b2d17edaa
gnu: Add r-assertive-properties. 
* gnu/packages/cran.scm (r-assertive-properties): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 8004bb2451
gnu: Add r-assertive-base. 
* gnu/packages/cran.scm (r-assertive-base): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus a536c7c9ad
gnu: Add r-rmpfr. 
* gnu/packages/cran.scm (r-rmpfr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 1ab5160434
gnu: Add r-gmp. 
* gnu/packages/cran.scm (r-gmp): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus dfd09f7bad
gnu: Add r-bigrquery. 
* gnu/packages/cran.scm (r-bigrquery): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus ad6fea1690
gnu: Add r-ontologyindex. 
* gnu/packages/cran.scm (r-ontologyindex): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9170eb7f1f
gnu: Add r-rapidjsonr. 
* gnu/packages/cran.scm (r-rapidjsonr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus e7176ac5bd
gnu: Add r-pixmap. 
* gnu/packages/cran.scm (r-pixmap): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 895efece37
gnu: Add r-strucchange. 
* gnu/packages/cran.scm (r-strucchange): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus d28be7b76b
gnu: Add r-als. 
* gnu/packages/cran.scm (r-als): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9401f56b81
gnu: Add r-chemometricswithr. 
* gnu/packages/cran.scm (r-chemometricswithr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 25861356ed
gnu: Add r-iso. 
* gnu/packages/cran.scm (r-iso): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 00436e2cac
gnu: Add r-nnls. 
* gnu/packages/cran.scm (r-nnls): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2871b670a8
gnu: Add r-kohonen. 
* gnu/packages/cran.scm (r-kohonen): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus d0eb09a134
gnu: Add r-grimport. 
* gnu/packages/cran.scm (r-grimport): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 7eec973e81
gnu: Add r-tractor-base. 
* gnu/packages/cran.scm (r-tractor-base): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus b98662c53a
gnu: Add r-reportr. 
* gnu/packages/cran.scm (r-reportr): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus cb03d6c6f3
gnu: Add r-ore. 
* gnu/packages/cran.scm (r-ore): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 6e09f50613
gnu: Add r-shades. 
* gnu/packages/cran.scm (r-shades): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus f79e63a571
gnu: Add r-rnifti. 
* gnu/packages/cran.scm (r-rnifti): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus b2e777b27c
gnu: Add r-tfmpvalue. 
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus adcd0cc87e
gnu: Add r-splitstackshape. 
* gnu/packages/cran.scm (r-splitstackshape): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5f0fbfc0ad
gnu: Add r-lassopv. 
* gnu/packages/cran.scm (r-lassopv): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3d62d98e69
gnu: Add r-flare. 
* gnu/packages/cran.scm (r-flare): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 029425cbce
gnu: Add r-vbsr. 
* gnu/packages/cran.scm (r-vbsr): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5574cb812a
gnu: Add r-rpostgresql. 
* gnu/packages/cran.scm (r-rpostgresql): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3088b3fc5b
gnu: Add r-rspectra. 
* gnu/packages/cran.scm (r-rspectra): New variable.
 2019-01-09 15:43:45 +01:00
Ludovic Courtès 0991fd5336
build: Require Guile 2.2. 
* configure.ac: Require Guile 2.2.
* README: Adjust accordingly.
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Deprecate.
(guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX.
 2019-01-09 14:47:53 +01:00
Efraim Flashner 0e28967250
Merge remote-tracking branch 'origin/master' into staging 2019-01-09 10:52:41 +02:00
Efraim Flashner 847ffe8852
gnu: bash: Update to 5.0. 
* gnu/packages/bash.scm (bash): Update to 5.0.
[source]: Remove patches.
(patch-url seqno): Prepare for bash-5.0 patches.
(%patch-series-4.4): Rename %patch-series-5.0, remove patches.
 2019-01-08 18:19:24 +02:00
Efraim Flashner 2cb4f940f2
gnu: readline: Update to 8.0. 
* gnu/packages/readline.scm (readline): Update to 8.0.
[source]: Remove patch series %patch-series-7.0.
(readline-7): New variable.
 2019-01-08 18:19:15 +02:00
Eric Bavier fefcb122ac
gnu: dvdisaster: Run regression tests. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument.
Add 'check' phase.
 2019-01-08 09:09:31 -06:00
Eric Bavier 98b0ec7fa6
gnu: dvdisaster: Install desktop file. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase.
 2019-01-08 09:09:25 -06:00
Clément Lassieur 627e6d8c11
gnu: prosody: Update to 0.11.1. 
* gnu/packages/messaging.scm (prosody): Update to 0.11.1.
[arguments]: Replace "Makefile" with "GNUmakefile".  Change "5.1" to "5.2".
Explain why there are no tests.
[inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket,
lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat,
lua5.2-socket, lua5.2-filesystem, lua5.2-sec.
 2019-01-08 15:23:36 +01:00
Clément Lassieur eb5b6c5777
gnu: Add lua5.2-sec. 
* gnu/packages/lua.scm (lua5.2-sec): New variable.
(make-lua-sec): New procedure.
(lua5.1-sec, lua5.2-sec): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur d994325747
gnu: Add lua-filesystem and lua5.2-filesystem. 
* gnu/packages/lua.scm (lua-filesystem, lua5.2-filesystem): New variables.
(make-lua-filesystem): New procedure.
(lua-filesystem, lua5.1-filesystem, lua5.2-filesystem): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur 253aab77c5
gnu: Add lua5.2-socket. 
* gnu/packages/lua.scm (lua5.2-socket): New variable.
(make-lua-socket): New procedure.
(lua5.1-socket, lua5.2-socket): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur 7c97a0631e
gnu: Add lua5.2-expat. 
* gnu/packages/lua.scm (lua5.2-expat): New variable.
(make-lua-expat): New procedure.
(lua5.1-expat, lua5.2-expat): Call it.
 2019-01-08 15:23:36 +01:00
Efraim Flashner 580f33e119
gnu: criu: Update to 3.11. 
* gnu/packages/virtualization.scm (criu): Update to 3.11.
[arguments]: Add custom phase to patch python calls.
 2019-01-08 12:29:42 +02:00
Efraim Flashner 49fe965d28
gnu: criu: Fix building on armhf-linux. 
* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm
version in the Makefile.
 2019-01-08 12:29:40 +02:00
Clément Lassieur b509381089
gnu: gajim-omemo: Update to 2.6.26. 
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26.
 2019-01-08 10:19:55 +01:00
Clément Lassieur 5cfec72f39
gnu: gajim: Update to 1.1.1. 
* gnu/packages/messaging.scm (gajim): Update to 1.1.1.
[arguments]: Replace #:test-target with a 'check' phase.
 2019-01-08 10:19:55 +01:00
Tobias Geerinckx-Rice eac5d425cd
gnu: tor: Update to 0.3.4.10. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.10.
 2019-01-08 04:21:53 +01:00
Tobias Geerinckx-Rice be4f8391a4
gnu: privoxy: Update to 3.0.28. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.28.
 2019-01-08 04:21:52 +01:00
Rutger Helling 3c85058c0e
gnu: libnet: Update to 1.2-rc3. 
* gnu/packages/networking.scm (libnet): Update to 1.2-rc3.
[source]: Use git-fetch.
 2019-01-07 22:07:01 +01:00
Julien Lepiller 8737666a99
gnu: ocaml-graph: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
 2019-01-07 22:05:47 +01:00
Julien Lepiller 33af92dd99
gnu: Move coq packages from ocaml to coq. 
* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp)
(coq-coquelicot, coq-bignums, coq-interval): Move from here...
* gnu/packages/coq.scm: ... to here.  New file.
 2019-01-07 22:05:37 +01:00
Alex Kost 912f0541a3
gnu: emacs-guix: Update to 0.5.1.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
 2019-01-07 22:52:46 +03:00
Danny Milosavljevic 40c7476af8
gnu: containerd: Update synopsis. 
* gnu/packages/docker.scm (containerd)[synopsis]: Modify.
 2019-01-07 19:13:04 +01:00
Danny Milosavljevic 54891e850a
gnu: containerd: Enable tests. 
* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
 2019-01-07 19:12:14 +01:00
Ricardo Wurmus 1f1e338ad4
gnu: Add missing use-module clause. 
This is a follow-up to 4e5b8f7215.

* gnu/packages/docker.scm: Add missing use-module clause.
 2019-01-07 18:45:23 +01:00
Ricardo Wurmus d53b23176f
gnu: Add r-corpcor. 
* gnu/packages/cran.scm (r-corpcor): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus e3bb076678
gnu: Add r-ddrtree. 
* gnu/packages/cran.scm (r-ddrtree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 9f33d76c33
gnu: Add r-qlcmatrix. 
* gnu/packages/cran.scm (r-qlcmatrix): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 58bc8857fb
gnu: Add r-combinat. 
* gnu/packages/cran.scm (r-combinat): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 13f5837b4c
gnu: Add r-densityclust. 
* gnu/packages/cran.scm (r-densityclust): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus b614009e6a
gnu: Add r-sparsesvd. 
* gnu/packages/cran.scm (r-sparsesvd): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus fbebccf7f6
gnu: Add r-docopt. 
* gnu/packages/cran.scm (r-docopt): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 45b469a472
gnu: Add r-rvcheck. 
* gnu/packages/cran.scm (r-rvcheck): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 61d7334906
gnu: Add r-tidytree. 
* gnu/packages/cran.scm (r-tidytree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus a6e4413d64
gnu: Add r-colorramps. 
* gnu/packages/cran.scm (r-colorramps): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus e37935e457
gnu: Add r-wordcloud. 
* gnu/packages/cran.scm (r-wordcloud): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus f3949fecb3
gnu: Add r-waveslim. 
* gnu/packages/cran.scm (r-waveslim): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus db084d79ea
gnu: Add r-tiff. 
* gnu/packages/cran.scm (r-tiff): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 44b0c5b5b1
gnu: Add r-fftwtools. 
* gnu/packages/cran.scm (r-fftwtools): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus 71601a5d92
gnu: Add r-softimpute. 
* gnu/packages/cran.scm (r-softimpute): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus 03a3ec5e18
gnu: Add r-adgoftest. 
* gnu/packages/cran.scm (r-adgoftest): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus a50abb3614
gnu: Add r-gsl. 
* gnu/packages/cran.scm (r-gsl): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus ced51a204e
gnu: Add r-stabledist. 
* gnu/packages/cran.scm (r-stabledist): New variable.
 2019-01-07 18:44:03 +01:00
Efraim Flashner dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28. 
* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
 2019-01-07 19:42:41 +02:00
Danny Milosavljevic 4e5b8f7215
gnu: Add containerd. 
* gnu/packages/docker.scm (containerd): New variable.
 2019-01-07 16:41:17 +01:00
Danny Milosavljevic 7f2d67c826
gnu: Add dummy linker for arm-elf. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
 2019-01-07 16:39:35 +01:00
Ricardo Wurmus 2a2760a08f
gnu: Move R packages from geo.scm to cran.scm. 
* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus 576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics). 
* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus 61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics). 
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics). 
* gnu/packages/web.scm: Remove obsolete use-module clause.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm 
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
 2019-01-07 15:55:06 +01:00
Jelle Licht 41a010875b
gnu: biber: Update to 2.12. 
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-07 15:40:58 +01:00
Ricardo Wurmus 60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm. 
* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
 2019-01-07 15:21:09 +01:00
Ludovic Courtès 67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm. 
Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.

* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here.  Keep
private.
 2019-01-07 15:09:30 +01:00
Jelle Licht 37e461e6f4
gnu: perl-file-slurper: Update to 0.012. 
* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
 2019-01-07 15:08:08 +01:00
Ricardo Wurmus 92ce188331
gnu: Move R packages from web.scm to cran.scm. 
* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
 2019-01-07 15:05:27 +01:00
Pierre Neidhardt 3a3d4d9d54
Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files" 
This reverts commit 5bc2e14add.
 2019-01-07 14:58:40 +01:00
Efraim Flashner 6fd2ed23ac
gnu: mantis: Limit to x86_64-linux. 
* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
 2019-01-07 15:47:34 +02:00
Pierre Neidhardt e97b23e4bd
gnu: package-elisp-from-package: Clarify docstring. 
* gnu/packages/emacs.scm (package-elisp-from-package)[docstring]: Clarify.
 2019-01-07 14:45:21 +01:00
Tim Gesthuizen 5bc2e14add
gnu: Use package-elisp-from-package for clangs emacs lisp files 
Use package-elisp-from-package for emacs-clang-format and emacs-clang-rename.
Also remove package-from-clang-elisp-file as it is not needed anymore.

* gnu/packages/llvm.scm (emacs-clang-format): Use package-elisp-from-package
* gnu/packages/llvm.scm (emacs-clang-rename): Use package-elisp-from-package
* gnu/packages/llvm.scm (package-from-clang-elisp-file): Remove function
 2019-01-07 14:45:21 +01:00
Tim Gesthuizen 7d5856bd45
gnu: Add package-elisp-from-package 
Add a function to generate package definitions that packages single elisp
files from other packages.

* gnu/packages/emacs.scm (package-elisp-from-package): New function
 2019-01-07 14:45:21 +01:00
Ludovic Courtès 915c6bf60c
gnu: python2-fastlmm: Move to machine-learning.scm. 
This is a step towards removing OCaml modules from the closure
of (gnu packages python).

* gnu/packages/python.scm (python2-fastlmm): Move to...
* gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
 2019-01-07 14:41:01 +01:00
Ludovic Courtès 6fd5a80dbe
gnu: Remove unnecessary build-side module imports. 
* gnu/packages/batik.scm, gnu/packages/boost.scm,
gnu/packages/calendar.scm, gnu/packages/gl.scm,
gnu/packages/lua.scm, gnu/packages/qt.scm, gnu/packages/simulation.scm,
gnu/packages/terminals.scm: Remove unnecessary import of (guix build
utils).
* gnu/packages/emacs.scm: Remove unnecessary imports of (guix ...).
* gnu/packages/libcanberra.scm: Use (srfi srfi-1) instead of (guix build
utils) for 'alist-delete'.
* gnu/packages/wxwidgets.scm: Likewise.
 2019-01-07 14:41:00 +01:00
Ludovic Courtès db1eb632be
gnu: Move Emacs modes for Dedukti to ocaml.scm. 
This removes OCaml-related modules from the closure of (gnu packages
emacs).

* gnu/packages/emacs.scm (emacs-dedukti-mode, emacs-flycheck-dedukti):
Move to ...
* gnu/packages/ocaml.scm: ... here.
 2019-01-07 14:41:00 +01:00
Ludovic Courtès 59a075047d
gnu: Move OCaml packages away from maths.scm. 
This removes (gnu packages ocaml) and related build system modules from
the closure of (gnu packages maths).

* gnu/packages/maths.scm (ocaml-gsl, ocaml4.01-gsl, cubicle): Move to...
* gnu/packages/ocaml.scm: ... here.
 2019-01-07 14:41:00 +01:00
Pierre Neidhardt 3b451546ed
gnu: Add rmlint. 
* gnu/packages/disk.scm (rmlint): New variable.
 2019-01-07 14:32:44 +01:00
Clément Lassieur e0aa5b5bbf
gnu: Add prosody-http-upload. 
* gnu/packages/messaging.scm (prosody-http-upload): New variable.
 2019-01-07 14:15:57 +01:00
Ricardo Wurmus e942813aac
gnu: Add mantis. 
* gnu/packages/bioinformatics.scm (mantis): New variable.
 2019-01-07 11:56:18 +01:00
Ricardo Wurmus ad6f13308b
gnu: Add sdsl-lite. 
* gnu/packages/datastructures.scm (sdsl-lite): New variable.
 2019-01-07 11:56:14 +01:00
Efraim Flashner 0559a4c2ca
gnu: groff: Update to 1.22.4. 
* gnu/packages/groff.scm (groff): Update to 1.22.4.
[source]: Remove patch.
(groff-minimal)[arguments]: Update configure flags to skip documentation.
* gnu/packages/patches/groff-source-date-epoch.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-07 11:59:04 +02:00
Efraim Flashner f478ff8605
gnu: ed: Update to 1.15. 
* gnu/packages/ed.scm (ed): Update to 1.15.
 2019-01-07 11:59:04 +02:00
Efraim Flashner 07c95566a4
gnu: gzip: Update to 1.10. 
* gnu/packages/compression.scm (gzip): Update to 1.10.
 2019-01-07 11:59:04 +02:00
Efraim Flashner 3526c72c5e
gnu: bison: Update to 3.2.4. 
* gnu/packages/bison.scm (bison): Update to 3.2.4.
 2019-01-07 11:59:03 +02:00
Efraim Flashner e992d56669
gnu: diffutils: Update to 3.7. 
* gnu/packages/base.scm (diffutils): Update to 3.7.
[source]: Remove patch.
[native-inputs]: Add perl.
* gnu/packages/commencement.scm (diffutils-boot0)[native-inputs]: Don't
add perl.
* gnu/packages/patches/diffutils-getopt.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-07 11:59:03 +02:00
Efraim Flashner 17f4334622
gnu: tar: Update to 1.31. 
* gnu/packages/base.scm (tar): Update to 1.31.
 2019-01-07 11:59:00 +02:00
Efraim Flashner c71bbfcca9
gnu: autoconf-archive: Update to 2019.01.06. 
* gnu/packages/autotools.scm (autoconf-archive): Update to 2019.01.06.
 2019-01-07 11:19:06 +02:00
Manolis Ragkousis 4d674b4143
gnu: Add jose. 
* gnu/packages/jose.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-01-07 10:15:37 +02:00
Rutger Helling bd86a1bede
gnu: Add slurp. 
* gnu/packages/image.scm (slurp): New variable.
 2019-01-07 08:31:14 +01:00
Alex Vong c824dedf71
gnu: libarchive: Replace with libarchive 3.3.3 and fix CVE-2018-{1000877,1000878,1000880}. 
* gnu/packages/backup.scm (libarchive)[source, home-page]: Use HTTPS.
[replacement]: New field.
(libarchive-3.3.3): New variable.
* gnu/packages/patches/libarchive-CVE-2018-1000877.patch,
gnu/packages/patches/libarchive-CVE-2018-1000878.patch,
gnu/packages/patches/libarchive-CVE-2018-1000880.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-07 05:42:34 +08:00
Gabriel Hondet b7ec276e57
gnu: Add kitty. 
* gnu/packages/terminals.scm (kitty): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-06 21:41:07 +01:00
Efraim Flashner 0f763db448
gnu: gama: Update to 2.02. 
* gnu/packages/gps.scm (gama): Update to 2.02.
 2019-01-06 15:42:06 +02:00
Efraim Flashner 644353d80d
gnu: moe: Update to 1.10. 
* gnu/packages/moe.scm (moe): Update to 1.10.
[license]: Fix license, gpl2+.
 2019-01-06 15:42:06 +02:00
Efraim Flashner c007e35d24
gnu: recutils: Update to 1.8. 
* gnu/packages/databases.scm (recutils): Update to 1.8.
[source]: Remove snippet.
[arguments]: Remove custom 'set-bash4.4-header-location phase. Enable
parallel tests.
[inputs]: Move check ...
[native-inputs]: ... to here. Add pkg-config.
 2019-01-06 15:42:06 +02:00
Efraim Flashner 30e06c2cee
gnu: unrtf: Update to 0.21.10. 
* gnu/packages/unrtf.scm (unrtf): Update to 0.21.10.
[source]: Remove patch, remove snippet.
[license]: Update to gpl3+.
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-06 15:42:05 +02:00
Efraim Flashner c65bfc658a
gnu: global: Update to 6.6.3. 
* gnu/packages/code.scm (global): Update to 6.6.3.
 2019-01-06 15:42:02 +02:00
Pierre Neidhardt 377038b8a2
gnu: emacs-evil-multiedit: Use version tag instead of commit. 
* gnu/packages/emacs.scm (emacs-evil-multiedit): Use version tag instead of commit.
 2019-01-06 13:22:09 +01:00
Rutger Helling a51ac7af7f
gnu: wine-staging: Add ffmpeg support. 
* gnu/packages/wine.scm (wine-staging)[inputs]: Add ffmpeg.
 2019-01-06 10:55:10 +01:00
Efraim Flashner 5fe2c549b4
gnu: gcc-boot0: Fix build on non-Intel systems. 
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: Fix 'match case
for alternate systems so a 'phase is added.
 2019-01-06 11:48:39 +02:00
Rutger Helling 0419c5741c
gnu: wine-staging: Update to 4.0-rc5. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc5.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc5.
 2019-01-06 10:32:05 +01:00
Efraim Flashner 99e61f3022
gnu: python-pyicu: Update to 2.2. 
* gnu/packages/python.scm (python-pyicu): Update to 2.2.
 2019-01-06 11:09:59 +02:00
Efraim Flashner a0bb4af215
gnu: python-pysocks: Update to 1.6.8. 
* gnu/packages/python.scm (python-pysocks): Update to 1.6.8.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 1fb68eefa1
gnu: python-packaging: Update to 18.0. 
* gnu/packages/python.scm (python-packaging): Update to 18.0.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 3cf324665d
gnu: python-astroid: Update to 2.1.0. 
* gnu/packages/python.scm (python-astroid): Update to 2.1.0.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 36df69d6fe
gnu: python-imagesize: Update to 1.1.0. 
* gnu/packages/python.scm (python-imagesize): Update to 1.1.0.
 2019-01-06 11:09:57 +02:00
Efraim Flashner 46930b7ea9
gnu: python-sphinx-alabaster-theme: Update to 0.7.12. 
* gnu/packages/python.scm (python-sphinx-alabaster-theme): Update to 0.7.12.
 2019-01-06 11:09:57 +02:00
Efraim Flashner 681edb0a4f
gnu: python-pycryptodome: Update to 3.7.2. 
* gnu/packages/python-crypto.scm (python-pycryptodome): Update to 3.7.2.
 2019-01-06 11:09:56 +02:00
Efraim Flashner da3e0cd948
gnu: python-certifi: Update to 2018.11.29. 
* gnu/packages/python-crypto.scm (python-certifi): Update to 2018.11.29.
 2019-01-06 11:09:53 +02:00
Maxim Cournoyer d95d3d6224
gnu: emacs-diff-hl: Update to 1.8.5. 
* gnu/packages/emacs.scm (emacs-diff-hl): Update to 1.8.5.
 2019-01-05 21:38:34 -05:00
guy fleury iteriteka 9a2e4c5db3
gnu: Add fasm. 
* gnu/packages/assembly.scm (fasm): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2019-01-05 19:26:05 -05:00
Lprndn e506b5e95d
gnu: Add nip2. 
* gnu/packages/image-processing.scm (nip2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-06 00:22:05 +01:00
Efraim Flashner 210e43c762
gnu: hunspell-dict-en: Update to 2018-04-16. 
* gnu/packages/aspell.scm (aspell-word-list): Update to 2018.04.16.
[arguments]: Use 'invoke'.
 2019-01-05 22:55:14 +02:00
Efraim Flashner 15ad9eb6d0
gnu: hunspell: Update to 1.7.0. 
* gnu/packages/libreoffice.scm (hunspell): Update to 1.7.0.
[source]: Use 'git-fetch'.
 2019-01-05 22:55:14 +02:00
Efraim Flashner 87fd7a35c2
gnu: streamlink: Fix build. 
* gnu/packages/video.scm (streamlink)[source]: Add patch.
* gnu/packages/patches/streamlink-update-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-05 22:55:14 +02:00
Efraim Flashner 918a9b584d
gnu: python-iso3166: Update to 0.9. 
* gnu/packages/iso-codes.scm (python-iso3166): Update to 0.9.
 2019-01-05 22:55:14 +02:00
Efraim Flashner 9350a08432
gnu: po4a: Update to 0.55. 
* gnu/packages/gettext.scm (po4a): Update to 0.55.
[arguments]: Add 'patch-docbook-xml phase to patch references to
docbook-xml. Update custom 'disable-failing-tests phase.
[native-inputs]: Replace docbook-xml with docbook-xml-4.1.2.
 2019-01-05 22:55:13 +02:00
Efraim Flashner 5af020bb3c
gnu: python-scripttest: Use pypi uri. 
* gnu/packages/check.scm (python-scripttest)[source]: Use pypi uri.
 2019-01-05 22:55:13 +02:00
Efraim Flashner d70cb3e008
gnu: python-pytest-xdist: Update to 1.25.0. 
* gnu/packages/check.scm (python-pytest-xdist): Update to 1.25.0.
[source]: Update source uri.
 2019-01-05 22:55:13 +02:00
Efraim Flashner f98091d1ba
gnu: python-pytest-cov: Update to 2.6.0. 
* gnu/packages/check.scm (python-pytest-cov): Update to 2.6.0.
 2019-01-05 22:55:13 +02:00
Efraim Flashner 4df24531dc
gnu: python-subunit: Update to 1.3.0. 
* gnu/packages/check.scm (python-subunit): Update to 1.3.0.
[home-page]: Use https.
 2019-01-05 22:55:10 +02:00
Arun Isaac b18b9d2042
gnu: octave: Fix makeinfo path configuration. 
* gnu/packages/maths.scm (octave-cli)[arguments]: Fix makeinfo path
configuration in configure-makeinfo phase.
 2019-01-05 23:49:59 +05:30
Eric Bavier 0dd8da0b1d
gnu: youtube-viewer: Install desktop file. 
* gnu/packages/video.scm (youtube-viewer)[arguments]: Add 'install-desktop
phase.
 2019-01-05 11:34:16 -06:00
Ricardo Wurmus a773f141cb
gnu: Add paps. 
* gnu/packages/pdf.scm (paps): New variable.
 2019-01-05 17:24:38 +01:00
Efraim Flashner e4be1faa43
gnu: python-isodate: Update to 0.6.0. 
* gnu/packages/time.scm (python-isodate): Update to 0.6.0.
[native-inputs]: Add python-six.
[home-page]: Update to new home-page.
 2019-01-04 16:17:18 +02:00
Efraim Flashner d1e75921b2
gnu: python-tzlocal: Update to 1.5.1. 
* gnu/packages/time.scm (python-tzlocal): Update to 1.5.1.
[arguments]: Add custom phase to fix symlink issue in pypi release.
[native-inputs]: Add python-mock.
[license]: Update to expat.
 2019-01-04 16:17:14 +02:00
Efraim Flashner f20cfa0665
gnu: python-ruamel.yaml: Update to 0.15.83. 
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.15.83.
 2019-01-04 15:40:35 +02:00
Mathieu Othacehe 548642db8a
gnu: video: Add missing copyright. 
* gnu/packages/video.scm: Add copyright.
 2019-01-04 11:43:06 +01:00
Mathieu Othacehe 34a19d3595
gnu: vlc: Fix typo in synopsis. 
* gnu/packages/video.scm (vlc)[synopsis]: Fix typo.
 2019-01-04 11:41:35 +01:00
Hartmut Goebel fb0356d956
gnu: kservice: Transfer patches from NixOS. 
Transfer the NixOS patches for kservice as of 2018-02-17.
- Make QDirIterator follow symlinks.
- Normalize path, but don't resolve symlinks.

* gnu/packages/kde-frameworks.scm(kservice)<patch>: New phase.
 2019-01-04 10:10:46 +01:00
Hartmut Goebel 0fd6138175
gnu: kpackage: Transfer patches from NixOS. 
Transfer the NixOS patches for kpackage as of 2018-02-17:
- Allow external paths.
- Make QDirIterator follow symlinks.

Decided to use a patch for one of the "allow external paths" changes since
'substitute*' seems not to be robust enough.

* gnu/packages/patches/kpackage-allow-external-paths.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm(kpackage)[source]: Use it. <patch>: New
  phase.
 2019-01-04 10:10:46 +01:00
Hartmut Goebel 16b8aff85b
gnu: kinit: Use LIBRARY_PATH to search for dynamically loaded libs. 
Transfer the NixOS "kdeinit-libpath" patch for kinit as of
2018-02-17.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kinit)[source]: Use it.
 2019-01-04 10:10:44 +01:00
Hartmut Goebel f8a0f3ac70
gnu: kinit: Use the store paths for dynamically loaded libs. 
Transfer the NixOS "kdeinit-extra_libs" patch for kinit as of
2018-02-17.

* gnu/packages/patches/kinit-kdeinit-extra_libs.patch: New filee.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kinit)[source]: Use it.
  <patch-paths>: New phase.
  [inputs]: Add kparts, plasma-framework.
 2019-01-04 10:10:43 +01:00
Hartmut Goebel a6e532815d
gnu: kio: Search 'smbd' on $PATH. 
Transfer the remaining NixOS patch for kio as of 2018-02-17.

* gnu/packages/patches/kio-search-smbd-on-PATH.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm(kio)<source>: Use it.
 2019-01-04 10:10:42 +01:00
Hartmut Goebel 8791aa98a7
gnu: kdelibs4support: Add todo comment for a patch from NixOS. 
* gnu/packages/kde-frameworks.scm(kdelibs4support): Add comment.
 2019-01-04 10:10:41 +01:00
Hartmut Goebel daff96de1f
gnu: kconfigwidgets: Make QDirIterator follow symlinks. 
Transfer the NixOS patch "qdiriterator-follow-symlinks" for kconfigwidgets as
of 2018-02-17.

* gnu/packages/kde-frameworks.scm(kconfigwidgets)<patch>: New phase.
 2019-01-04 10:10:40 +01:00
Hartmut Goebel be8cb44a9c
gnu: kcmutils: Print plugin name when loading fails. 
Transfer the NixOS patch "kcmutils-debug-module-loader" for kcmutils as of
2018-02-17.

* gnu/packages/kde-frameworks.scm(kcmutils)<patch>: Add substitute for
  src/kcmoduleloader.cpp.
 2019-01-04 10:10:39 +01:00
Hartmut Goebel fd8c53cb9e
gnu: kcmutils: Make QDirIterator follow symlinks. 
Transfer the NixOS patch "kcmutils-follow-symlinks" for kcmutils as of
2018-02-17.

* gnu/packages/kde-frameworks.scm(kcmutils)<patch>: New phase.
 2019-01-04 10:10:38 +01:00
Hartmut Goebel b824dbec5d
gnu: krunner: Blacklist another test failing with 5.49.0. 
* gnu/packages/kde-frameworks.scm(krunner)[#phases]<check-setup>:
  Blacklist 'testMulti'.
 2019-01-04 10:01:08 +01:00
Hartmut Goebel 69b6086182
gnu: extra-cmake-modules: Fix install-path for plugins. 
The respective entry changed for kde-frameworks 5.46.

* gnu/packages/kde-frameworks.scm(krunner)[#phases]<fix-lib-path>:
  Change substitute for QTPLUGINDIR.
 2019-01-04 10:01:08 +01:00
Efraim Flashner ac277bc7c5
gnu: libsecret: Update to 0.18.7. 
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
 2019-01-04 09:20:50 +02:00
Efraim Flashner 0528f70d3d
gnu: goffice: Update to 0.10.44. 
* gnu/packages/gnome.scm (goffice): Update to 0.10.44.
 2019-01-04 09:20:48 +02:00
Alex Vong 5651e74cc6
gnu: guile-gnunet: Update to 0.0-1.d12167a. 
* gnu/packages/gnunet.scm (guile-gnunet): Update to 0.0-1.d12167a.
[version]: Use git-version.
[source]: Use git-file-name.
 2019-01-04 07:34:25 +08:00
Alex Vong 47719c9bc0
gnu: libmicrohttpd: Update to 0.9.62. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.62.
 2019-01-04 07:34:08 +08:00
Alex Vong 8f36c8e9ea
gnu: libextractor: Fix CVE-2018-{20430,20431}. 
* gnu/packages/patches/libextractor-CVE-2018-20430.patch,
gnu/packages/patches/libextractor-CVE-2018-20431.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnunet.scm (libextractor)[source]: Use them.
 2019-01-04 07:33:46 +08:00
Alex Vong 1983a9b0a5
gnu: libextractor: Update to 1.8. 
* gnu/packages/gnunet.scm (libextractor): Update to 1.8.
 2019-01-04 07:32:38 +08:00
Ricardo Wurmus 6ec95a003b
gnu: yoshimi: Update to 1.5.10. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.
 2019-01-03 23:14:38 +01:00
Kei Kebreau b634b5c253
gnu: vboot-utils: Fix building on armhf-linux. 
* gnu/packages/bootloaders.scm (vboot-utils)[source]: Add patches.
[arguments]: Conditionally add "HOST_ARCH=arm" to #:make-flags.
* gnu/packages/patches/vboot-utils-fix-format-load-address.patch,
gnu/packages/patches/vboot-utils-fix-tests-show-contents.patch,
gnu/packages/patches/vboot-utils-skip-test-workbuf.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-03 15:40:27 -05:00
Efraim Flashner 824fc425dd
gnu: gnupg: Update to 2.2.12. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.12.
 2019-01-03 22:14:22 +02:00
Mathieu Othacehe fc2982f754
gnu: vlc: Add protobuf to inputs. 
* gnu/packages/video.scm (vlc)[inputs]: Add protobuf.
 2019-01-03 20:38:16 +01:00
Mathieu Othacehe 78d112c2ff
gnu: vlc: Add libmicrodns to inputs. 
* gnu/packages/video.scm (vlc)[inputs]: Add libmicrodns.
 2019-01-03 20:38:16 +01:00
Mathieu Othacehe 498911d315
gnu: Add libmicrodns. 
* gnu/packages/dns.scm (libmicrodns): New package.
 2019-01-03 20:38:16 +01:00
Efraim Flashner 4382cef28c
gnu: xdisorg.scm: Add missing import. 
* gnu/packages/xdisorg.scm: Add missing import.
 2019-01-03 16:25:31 +02:00
Efraim Flashner fbb456dda1
gnu: bullet: Update to 2.88. 
* gnu/packages/game-development.scm (bullet): Update to 2.88.
[source]: Use 'git-fetch'. Add snippet to remove bundled binaries and
libraries.
[arguments]: Add configure-flags to prevent building demos. Add custom
'remove-failing-tests phase to skip tests which fail after removing
bundled code.
 2019-01-03 16:21:42 +02:00
Rutger Helling 95bf2fb637
gnu: Add wl-clipboard. 
* gnu/packages/xdisorg.scm (wl-clipboard): New variable.
 2019-01-03 14:58:34 +01:00
Danny Milosavljevic df147c4fdb
gnu: emacs-magit-svn: Fix build. 
* gnu/packages/emacs.scm (emacs-magit-svn): Replace ',name' by
'"emacs-magit-svn"'.
 2019-01-03 10:30:23 +01:00
Maxim Cournoyer 707efe171a
gnu: gnucash: Fix test failure. 
Fixes issue #32057 (see: https://issues.guix.info/issue/32057).

* gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Use it.
 2019-01-02 17:10:08 -05:00
Efraim Flashner d804a40a51
gnu: emacs-hydra: Update to 0.14.0. 
* gnu/packages/emacs.scm (emacs-hydra): Update to 0.14.0.
 2019-01-02 22:11:05 +02:00
Efraim Flashner 2e689c22b3
gnu: emacs-edit-indirect: Update to 0.1.5. 
* gnu/packages/emacs.scm (emacs-edit-indirect): Update to 0.1.5.
[source]: Use 'git-fetch'.
 2019-01-02 22:11:05 +02:00
Efraim Flashner 33678041ce
gnu: signing-party: Update to 2.7. 
* gnu/packages/gnupg.scm (signing-party): Update to 2.7.
[home-page]: Update to new home-page.
[arguments]: All phases end with #t.
 2019-01-02 22:11:05 +02:00
Efraim Flashner c7a2b36daf
gnu: perl-archive-zip: Update to 1.64. 
* gnu/packages/comression.scm (perl-archive-zip): Update to 1.64.
 2019-01-02 22:11:04 +02:00
Efraim Flashner 2f325b6391
gnu: zstd: Update to 1.3.8. 
* gnu/packages/compression.scm (zstd): Update to 1.3.8.
[home-page]: Update to new home-page.
 2019-01-02 22:11:04 +02:00
Efraim Flashner a1815fe6e1
gnu: perl-yaml-tiny: Update to 1.73. 
* gnu/packages/perl.scm (perl-yaml-tiny): Update to 1.73.
 2019-01-02 22:11:03 +02:00
Efraim Flashner 767e00ec23
gnu: perl-json-maybexs: Update to 1.004000. 
* gnu/packages/perl.scm (perl-json-maybexs): Update to 1.004000.
 2019-01-02 22:11:03 +02:00
Efraim Flashner 150e3b924a
gnu: perl-cpanel-json-xs: Update to 4.08. 
* gnu/packages/perl.scm (perl-cpanel-json-xs): Update to 4.08.
 2019-01-02 22:11:02 +02:00
Efraim Flashner 31d9f55271
gnu: perl-test-mockmodule: Update to 0.170.0. 
* gnu/packages/perl-check.scm (perl-test-mockmodule): Update to 0.170.0.
[source]: Update source uri.
[native-inputs]: Add perl-test-warnings.
 2019-01-02 22:11:02 +02:00
Efraim Flashner 548c120b57
gnu: perl-test-simple: Update to 1.302141. 
* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302141.
 2019-01-02 22:10:58 +02:00
Efraim Flashner afbf9763fa
gnu: qtsyncthingtray: Use 'git-fetch'. 
* gnu/packages/sync.scm (qtsyncthingtray)[source]: Use 'git-fetch'.
[arguments]: Update custom 'install phase.
 2019-01-02 19:53:06 +02:00
Efraim Flashner a69f071537
gnu: owncloud-client: Update to 2.5.1.10973. 
* gnu/packages/sync.scm (owncloud-client): Update to 2.5.1.10973.
* gnu/packages/patches/owncloud-disable-updatecheck.patch: Update patch.
 2019-01-02 19:53:06 +02:00
Efraim Flashner 2879e605bf
gnu: qtkeychain: Update to 0.9.1. 
* gnu/packages/qt.scm (qtkeychain): Update to 0.9.1.
[source]: Use 'git-fetch'.
[arguments]: Update custom 'set-qt-trans-dir phase.
 2019-01-02 19:53:03 +02:00
Ricardo Wurmus 9fb5771af7
gnu: jupyter: Add missing dependency. 
* gnu/packages/python.scm (jupyter)[propagated-inputs]: Add python-qtconsole.
[home-page]: Use https URL.
[arguments]: Update comment on why tests are disabled.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus d47b21c69c
gnu: python-terminado: Update to 0.8.1. 
* gnu/packages/python-web.scm (python-terminado): Update to 0.8.1.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 38306e1168
gnu: Add python-qtconsole. 
* gnu/packages/python.scm (python-qtconsole): New variable.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 91dd8b3687
gnu: python-notebook: Update to 5.7.4. 
* gnu/packages/python.scm (python-notebook): Update to 5.7.4.
[arguments]: Use INVOKE for tests.
[propagated-inputs]: Remove python-ipython; add python-prometheus-client,
python-send2trash, and python-terminado.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 493e5e6daa
gnu: python-jupyter-console: Fix inputs. 
* gnu/packages/python.scm (python-jupyter-console)[propagated-inputs]: Remove
python-ipython; replace python-prompt-toolkit with python-prompt-toolkit-1.
[native-inputs]: Add python-nose.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 4fc112b452
gnu: python-ipython: Remove dependency on python-jupyter-core-minimal. 
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove
python-jupyter-core-minimal.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 88bf9be38e
gnu: python-ipywidgets: Enable tests. 
* gnu/packages/python.scm (python-ipywidgets)[arguments]: Remove.
[native-inputs]: Add python-nose and python-pytest.
[propagated-inputs]: Remove python-ipykernel.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus fec14302d5
gnu: python-widgetsnbextension: Update to 3.4.2. 
* gnu/packages/python.scm (python-widgetsnbextension): Update to 3.4.2.
[propagated-inputs]: Add python-ipykernel.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus b6fc288e57
gnu: Add python-send2trash. 
* gnu/packages/python.scm (python-send2trash, python2-send2trash): New
variables.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus abe50aa369
gnu: Add python-prometheus-client. 
* gnu/packages/python.scm (python-prometheus-client,
python2-prometheus-client): New variables.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus ffabccb22f
gnu: python-jupyter-client: Update to 5.2.4. 
* gnu/packages/python.scm (python-jupyter-client): Update to 5.2.4.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 75246daff2
gnu: python-ipython: Break dependency on python-ipykernel. 
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove
python-ipykernel.
[arguments]: Delete more broken tests.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus f0eb442c20
gnu: python-ipykernel: Update to 5.1.0. 
* gnu/packages/python.scm (python-ipykernel): Update to 5.1.0.
[arguments]: Enable tests.
[propagated-inputs]: Add python-ipython.
[native-inputs]: Add python-pytest and python-nose.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 92a9f93615
gnu: python-ipython: Update to 5.8.0. 
* gnu/packages/python.scm (python-ipython): Update to 5.8.0.
[propagated-inputs]: Replace python-prompt-toolkit with
python-prompt-toolkit-1.
[arguments]: Use INVOKE in the "check" phase; return #T from the "fix-tests"
phase.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 464cb5b55d
gnu: Add python-prompt-toolkit-1. 
* gnu/packages/python.scm (python-prompt-toolkit-1, python2-prompt-toolkit-1):
New variables.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 80486d6673
gnu: python-prompt-toolkit: Update to 2.0.7. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 2.0.7.
[arguments]: Enable tests; add phase "post-install-check" and delete "check"
phase.
[native-inputs]: Add python-pytest.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus eecaf17086
gnu: python-hy: Use INVOKE. 
* gnu/packages/python.scm (python-hy)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 13e7c884c7
gnu: python-clint: Use INVOKE. 
* gnu/packages/python.scm (python-clint)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus ec933e05a2
gnu: python-configargparse: Use INVOKE. 
* gnu/packages/python.scm (python-configargparse)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus cd70798a23
gnu: python-docopt: Use INVOKE. 
* gnu/packages/python.scm (python-docopt)[arguments]: Use INVOKE.
 2019-01-02 16:33:53 +01:00
Alex Vong 8ef0655747
gnu: ruby: Remove versions 1.8, 2.1 and 2.2. 
Remove ruby versions which have reached EOL.

See <https://lists.gnu.org/archive/html/guix-devel/2018-11/msg00421.html>.

* gnu/packages/ruby.scm (ruby-1.8, ruby-2.1, ruby-2.2): Remove variables.
 2019-01-02 15:54:48 +08:00
Hartmut Goebel 059954fa01
gnu: breeze-icons: Fix failing tests. 
* gnu/packages/kde-frameworks.scm(breeze-icons)[arguments]<#phases>:
  Remove outdated 'disable-failing-test, add 'add-symlinks.
 2019-01-02 01:33:14 +01:00
Leo Famulari 2288c73936
gnu: Syncthing: Update to 1.0.0. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.0.0.
 2019-01-01 15:18:33 -05:00
Nicolas Goaziou 9c9c4fea1b
gnu: emacs-org-contrib: Update to 9.2. 
* gnu/packages/emacs.scm (emacs-org-contrib): Update to 9.2.
[propagated-inputs]: Add missing inputs.
 2019-01-01 18:23:15 +01:00
Nicolas Goaziou e609114fde
gnu: org: Update to 9.2. 
* gnu/packages/emacs.scm (emacs-org): Update to 9.2.
 2019-01-01 18:22:46 +01:00
Nicolas Goaziou 15de7c58a5
gnu: Add emacs-arduino-mode. 
* gnu/packages/emacs.scm (emacs-arduino-mode): New variable.
 2019-01-01 18:10:29 +01:00
Maxim Cournoyer e68bfcfda1
gnu: emacs-w3m: Fix build. 
The previously (unofficial) Git repository mirror is no longer available, so
we fallback to using the official CVS repository.

Fixes issue 33938 (see: https://issues.guix.info/issue/33938).

* gnu/packages/emacs.scm (emacs-w3m)[origin]: Fetch the sources from the
  official CVS repository.
 2019-01-01 11:34:45 -05:00
Mark H Weaver ff148ea5d6
gnu: linux-libre: Update to 4.20, while retaining 4.19 LTS. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): New variable.
(linux-libre): Use %linux-libre-4.20-patches.
(%linux-libre-4.19-version, %linux-libre-4.19-hash)
(%linux-libre-4.19-patches, linux-libre-4.19): New variables.
(linux-libre-arm-generic, linux-libre-arm-omap2plus): Use
%linux-libre-4.20-patches.
(linux-libre-arm-generic-4.19, linux-libre-arm-omap2plus-4.19): New variables.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
 2019-01-01 11:22:58 -05:00
Mark H Weaver ce899af109
gnu: linux-libre: Build with GCC-7 on all systems. 
* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: Include GCC-7
unconditionally.  Previously it was included only on Intel systems.
Add GMP, MPFR, and MPC.
[arguments]: Add 'work-around-gcc-7-include-path-issue' phase.
 2019-01-01 11:22:55 -05:00
Mark H Weaver 3fb7b61250
gnu: linux-libre: Minor cleanups. 
* gnu/packages/linux.scm: Remove comment about armhf-linux kernel configuration.
(%intel-compatible-systems, %linux-compatible-systems): Remove these
variables, inlining their values into the few places where they are used.
(%linux-libre-arm-export-__sync_icache_dcache-patch): New variable.
(%linux-libre-4.19-patches): Use the above variable.
 2019-01-01 11:22:27 -05:00
Oleg Pykhalov 8b6c91ba53
gnu: php-with-bcmath: Deprecate in favour of 'php'. 
This is a follow-up to 4629d26755.

* gnu/packages/php.scm (php-with-bcmath): Deprecate in favour of 'php'.
* gnu/tests/monitoring.scm (%zabbix-os): Use this.
 2019-01-01 18:57:56 +03:00
Vasile Dumitrascu 4db80f8b11
gnu: ruby-pg: Update to 1.1.3. 
* gnu/packages/ruby.scm (ruby-pg): Update to 1.1.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2019-01-01 14:45:14 +00:00
Efraim Flashner d25a48768d
gnu: amule: Use 'git-fetch'. 
* gnu/packages/networking.scm (amule)[source]: Use 'git-fetch'.
 2019-01-01 12:54:20 +02:00
Efraim Flashner fc1ed8c1a7
gnu: amule: Don't run 'bootstrap phase. 
* gnu/packages/networking.scm (amule)[arguments]: Delete 'bootstrap
phase.
 2019-01-01 12:49:52 +02:00
Efraim Flashner 0109b89c58
gnu: allegro@5.0: Fix building with newer mesa. 
* gnu/packages/game-development.scm (allegro@5.0)[source]: Add patch.
(allegro)[patch]: Rename patch file.
* gnu/packages/patches/allegro-fix-compiliation-mesa-18.2.5-and-later.patch:
Rename to gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-01 10:55:44 +02:00
Efraim Flashner d5c60e0aff
gnu: allegro@4: Fix building with newer mesa. 
* gnu/packages/game-development.scm (allegro@4)[source]: Add patch.
* gnu/packages/patches/allegro4-mesa-18.2.5-and-later.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-01 10:55:41 +02:00
Efraim Flashner 897f303d2f
gnu: libphidget: Update to 2.1.8.20180607. 
* gnu/packages/libphidget.scm (libphidget): Update to 2.1.8.20180607.
 2019-01-01 09:30:56 +02:00
Efraim Flashner b114aba284
gnu: libphidget: Update source uri. 
* gnu/packages/libphidget.scm (libphidget)[source]: Update source uri.
[home-page]: Use https.
 2019-01-01 09:30:56 +02:00
Nicolas Goaziou 707a792dd6
gnu: emacs-matrix-client: Update to 5d8e959. 
* gnu/packages/emacs.scm (emacs-matrix-client): Update to
  5d8e959a63e5de05b628ca8e1dfb974f7f618821.
[propagated-inputs]: Add new inputs.
 2018-12-31 17:50:04 +01:00
Nicolas Goaziou e5939e5027
gnu: Add emacs-frame-purpose. 
* gnu/packages/emacs.scm (emacs-frame-purpose): New variable.
 2018-12-31 17:48:24 +01:00
Leo Famulari eff366b469
gnu: python-lxml: Update to 4.2.5 [fixes CVE-2018-19787]. 
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 4.2.5.
 2018-12-31 10:36:43 -05:00
Efraim Flashner 47970cf66c
gnu: wesnoth: Fix building with newer boost. 
* gnu/packages/games.scm (wesnoth)[source]: Add patch.
* gnu/packages/patches/wenoth-newer-boost.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-31 10:26:32 +02:00
Kei Kebreau 402c36c1d6
gnu: chicken: Update to 5.0.0. 
* gnu/packages/scheme.scm (chicken): Update to 5.0.0.
 2018-12-30 17:05:27 -05:00
Kei Kebreau 697b6ca368
gnu: hop: Update to 3.2.0-pre1. 
* gnu/packages/scheme.scm (hop): Update to 3.2.0-pre1.
[arguments]: Add "--hostcc=gcc" to configure flags in the 'configure' phase
and substitute absolute reference to "/bin/rm".
 2018-12-30 17:00:00 -05:00
Kei Kebreau deaf0e7b21
gnu: bigloo: Update to 4.3e1. 
* gnu/packages/scheme.scm (bigloo): Update to 4.3e1.
 2018-12-30 17:00:00 -05:00
Efraim Flashner b843b05abc
gnu: ffmpeg@2.8: Remove variable. 
* gnu/packages/video.scm (ffmpeg@2.8): Remove variable.
 2018-12-30 20:22:59 +02:00
Efraim Flashner 1839768ca1
gnu: vinagre: Don't build icon-cache. 
* gnu/packages/gnome.scm (vinagre)[arguments]: Add custom phase to
remove 'gtk-update-icon-cache'.
[native-inputs]: Remove gtk+-bin.
 2018-12-30 20:22:59 +02:00
Efraim Flashner 684f97f8c9
gnu: vinagre: Update package for newer freerdp. 
* gnu/packages/gnome.scm (vinagre)[source]: Update patches.
[arguments]: Add custom  phase to replace 'freerdp' with
'freerdp2'. Remove configure flags.
* gnu/packages/patches/vinagre-revert-1.patch,
gnu/packages/patches/vinagre-revert-2.patch: Remove files.
* gnu/packages/patches/vinagre-newer-freerdp.patch,
gnu/packages/patches/vinagre-newer-rdp-parameters.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register changes.
 2018-12-30 20:22:59 +02:00
Efraim Flashner bbbe7adda6
gnu: freerdp: Enable tests. 
* gnu/packages/rdesktop.scm (freerdp)[arguments]: Enable tests. Add
configure-flag to build tests.
 2018-12-30 20:22:58 +02:00
Efraim Flashner a1a6fc702a
gnu: freerdp: Update to 2.0.0-rc4. 
* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc4.
[native-inputs]: Add docbook-xml, glib. Sort alphabetically.
[inputs]: Add libxkbcommon, wayland. Sort alphabetically.
[arguments]: Explicitly disable libsystemd.
 2018-12-30 20:22:55 +02:00
Leo Famulari 6ec43b0d6b
gnu: OpenSSL 1.1: Update to 1.1.1a [fixes CVE-2018-{0734,0735}]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1a.
 2018-12-30 13:09:59 -05:00
Kei Kebreau cb3854cd11
gnu: gambit-c: Update to 4.9.1. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.9.1.
[home-page]: Update URL.
 2018-12-30 11:11:25 -05:00
Efraim Flashner ea593fe298
gnu: vlc: Update to 3.0.5. 
* gnu/packages/video.scm (vlc): Update to 3.0.5.
[source]: Remove patch.
(%vlc-libx264-compat.patch): Remove variable.
 2018-12-30 14:09:18 +02:00
Efraim Flashner 5dc5c5ea41
gnu: fbreader: Install desktop file. 
* gnu/packages/ebook.scm (fbreader)[arguments]: Add phase to remove
hardcoded paths for desktop dir.
 2018-12-30 12:36:25 +02:00
Efraim Flashner 6f0ae1439c
gnu: fbreader: Use 'git-fetch'. 
* gnu/packages/ebook.scm (fbreader)[source]: Use 'git-fetch'.
 2018-12-30 12:04:10 +02:00
Efraim Flashner 152d6bf014
gnu: fbreader: Fix building with newer curl. 
* gnu/packages/ebook.scm (fbreader)[source]: Add patch.
* gnu/packages/patches/fbreader-curl-7.62.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-30 11:49:31 +02:00
Timothy Sample 89c8656200
gnu: gdm: Change locale settings file. 
* gnu/packages/gnome.scm (gdm)[arguments]: Set the '--with-lang-file'
configure flag to '/etc/environment'.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-12-30 10:20:39 +01:00
Timothy Sample 92deb5cc92
gnu: gdm: Pass XDG_DATA_DIRS into session environment. 
* gnu/packages/gnome.scm (gdm)[arguments]: Update the pre-configure
phase so that GDM preserves the XDG_DATA_DIRS variable when setting up
the session environment.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-12-30 10:20:38 +01:00
Mark H Weaver a1814acf82
gnu: linux-libre: Update to 4.19.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.13.
(%linux-libre-hash): Update hash.
 2018-12-29 22:39:19 -05:00
Mark H Weaver 8f4d318921
gnu: linux-libre@4.14: Update to 4.14.91. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.91.
(%linux-libre-4.14-hash): Update hash.
 2018-12-29 22:38:26 -05:00
Mark H Weaver 830b44bae4
gnu: linux-libre@4.9: Update to 4.9.148. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.148.
 2018-12-29 22:37:32 -05:00
Björn Höfling 4f36d98f7b
gnu: youtube-dl: Update to 2018.12.17. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.12.17.
 2018-12-29 21:50:34 +01:00
Efraim Flashner 9123c420dd
gnu: vim: Update to 8.1.0644. 
* gnu/packages/vim.scm (vim): Update to 8.1.0644.
[native-inputs]: Add libtool.
(xxd)[native-inputs]: New field, empty list.
(vim-full)[native-inputs]: Also inherit native-inputs from vim.
 2018-12-29 20:26:45 +02:00
Efraim Flashner 597f35e6f0
gnu: vim-full: Fix test suite. 
* gnu/packages/vim.scm (vim-full)[arguments]: Add custom phase to remove
test87.
 2018-12-29 20:26:45 +02:00
Efraim Flashner 38a3b66619
gnu: gnuastro: Update to 0.8. 
* gnu/packages/astronomy.scm (gnuastro): Update to 0.8.
[native-inputs]: Add lzip.
 2018-12-29 20:26:45 +02:00
Kei Kebreau a8b567f9c0
gnu: schismtracker: Update to 20181223. 
* gnu/packages/music.scm (schismtracker): Update to 20181223.
 2018-12-29 12:56:51 -05:00
Ricardo Wurmus 4629d26755
gnu: php: Build bcmath. 
* gnu/packages/php.scm (php)[arguments]: Add "--enable-bcmath" to configure
flags.
 2018-12-29 13:27:20 +01:00
Rutger Helling 8e7dd71c19
gnu: wine-staging: Update to 4.0-rc4. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc4.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc4.
 2018-12-29 13:03:04 +01:00
Nicolas Goaziou 31603ee608
gnu: giac-xcas: Update to 1.5.0-29. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-29.
 2018-12-29 10:06:36 +01:00
Nicolas Goaziou 8168404f3c
gnu: mame: Update to 0.205. 
* gnu/packages/emulators.scm (mame): Update to 0.205.
[arguments]: Remove unnecessary fix.
 2018-12-29 08:29:48 +01:00
Danny Milosavljevic e4231cfeea
gnu: Add xfsprogs. 
* gnu/packages/linux.scm (xfsprogs): New variable.
 2018-12-28 14:20:49 +01:00
Nicolas Goaziou 11d44d0b2a
gnu: musescore: Update to 3.0. 
* gnu/packages/music.scm (musescore): Update to 3.0.
[build-system]: Switch to CMake build system.
[arguments]: Apply build system change.
[native-inputs]: Remove unnecessary "cmake" input.
 2018-12-28 13:26:02 +01:00
Efraim Flashner 4bc00b5631
gnu: wget: Enable previously failing test. 
* gnu/packages/wget.scm (wget)[arguments]: Remove custom phase skipping
SSL tests.
 2018-12-28 09:58:56 +02:00
Efraim Flashner 54d6096255
gnu: wget: Update to 1.20.1. 
* gnu/packages/wget.scm (wget): Update to 1.20.1.
 2018-12-28 09:37:53 +02:00
Ludovic Courtès 842ffcfd2d
gnu: cdrtools: Do not record the kernel version. 
This allows for reproducible builds across machines running different
versions of the kernel Linux.

* gnu/packages/cdrom.scm (cdrtools)[source](modules, snippet): New
fields.
 2018-12-28 00:30:03 +01:00
Marius Bakke af8fd11bed
Merge branch 'master' into staging 2018-12-27 15:44:38 +01:00
Marius Bakke 5a7899fd88
gnu: mbedtls-apache: Update to 2.16.0. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.0.
 2018-12-27 15:41:34 +01:00
Marius Bakke b79ed58122
gnu: samba: Update to 4.9.4. 
* gnu/packages/samba.scm (samba): Update to 4.9.4.
 2018-12-27 15:41:34 +01:00
Marius Bakke 035f916114
gnu: strace: Update to 4.26. 
* gnu/packages/linux.scm (strace): Update to 4.26.
[license]: Change to LGPL2.1+.
 2018-12-27 15:41:34 +01:00
Efraim Flashner b130354999
gnu: vim: Don't use unstable tarball. 
* gnu/packages/vim.scm (vim)[source]: Use 'git-fetch'.
 2018-12-27 15:34:02 +02:00
Efraim Flashner 3d6bc5af91
gnu: vim: Use https. 
* gnu/packages/vim.scm (vim)[home-page]: Use https.
 2018-12-27 15:34:02 +02:00
Efraim Flashner 83541fb678
gnu: viewnior: Don't use unstable tarball. 
* gnu/packages/image-viewers.scm (viewnior)[source]: Use 'git-fetch'.
 2018-12-27 15:33:58 +02:00
Pierre-Antoine Rouby 039ccc7118
gnu: Add guile-mastodon. 
* gnu/packages/guile.scm (guile-mastodon): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-27 12:08:25 +01:00
Ludovic Courtès ad3c9fbbb9
gnu: guix: Update to 7ba2b27. 
* gnu/packages/package-management.scm (guix): Update to 7ba2b27.
 2018-12-27 12:08:25 +01:00
Efraim Flashner 1262be5c61
gnu: glib-networking: Work around test failure. 
* gnu/packages/gnome.scm (glib-networking)[source]: Add patch.
* gnu/packages/patches/glib-networking-connection.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-27 12:55:45 +02:00
Julien Lepiller 912f44005d
gnu: ocaml: Fix indentation. 
* gnu/packages/ocaml.scm: Fix indentation issues.
 2018-12-27 09:47:22 +01:00
Gabriel Hondet 2e951707f5
gnu: Add ocaml-yojson. 
* gnu/packages/ocaml.scm (ocaml-yojson): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2018-12-27 09:37:40 +01:00
Gabriel Hondet 2939fe7b3c
gnu: Add ocaml-biniou. 
* gnu/packages/ocaml.scm (ocaml-biniou): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2018-12-27 09:35:17 +01:00
Gabriel Hondet ad536c98f9
gnu: Add emacs-flycheck-dedukti. 
* gnu/packages/emacs.scm (emacs-flycheck-dedukti): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2018-12-27 09:19:15 +01:00
Gabriel Hondet 4a2e1e7280
gnu: Add emacs-dedukti-mode. 
* gnu/packages/emacs.scm (emacs-dedukti-mode): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2018-12-27 09:18:31 +01:00
Efraim Flashner 6286880a8b
gnu: terminology: Update to 1.3.2. 
* gnu/packages/enlightenment.scm (terminology): Update to 1.3.2.
 2018-12-27 09:53:03 +02:00
Efraim Flashner d037353c76
gnu: kodi: Update to 18.0rc3. 
* gnu/packages/kodi.scm (kodi): Update to 18.0rc3.
 2018-12-27 09:35:46 +02:00
Kei Kebreau fbf7b7e9e6
gnu: mit-scheme: Enable tests. 
* gnu/packages/scheme.scm (mit-scheme)[arguments]: Remove #:tests?.  Add
'patch-/bin/sh' phase.
[native-inputs]: Add autoconf, automake, and libtool.
 2018-12-26 16:37:45 -05:00
Julien Lepiller 79f6fc0d99
gnu: antlr2: Fix reproducibility. 
* gnu/packages/java.scm (antlr2)[arguments]: Add a phase to fix a timestamp issue.
 2018-12-26 18:58:02 +01:00
Meiyo Peng 7ba2b27467
gnu: Add badvpn. 
* gnu/packages/vpn.scm (badvpn): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-26 18:40:49 +01:00
Marius Bakke 2bfcdbce51
Merge branch 'master' into staging 2018-12-26 16:03:09 +01:00
Marius Bakke e99d036828
gnu: efl: Fix build on 32-bit architectures. 
* gnu/packages/patches/efl-mesa-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/enlightenment.scm (efl)[source](patches): Use it.
 2018-12-26 12:27:57 +01:00
Marius Bakke 33eb63da64
gnu: sssd: Fix build with cURL >= 7.62.0. 
* gnu/packages/patches/sssd-curl-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/sssd.scm (sssd)[source](patches): Use it.
 2018-12-26 12:27:57 +01:00
Efraim Flashner 10275b7466
gnu: python-openid: Update to 3.1.0. 
* gnu/packages/python-web.scm (python-openid): Update to 3.1.0.
[arguments]: Update custom 'check phase.
[native-inputs]: Add python-coverage.
 2018-12-26 12:29:48 +02:00
Efraim Flashner fb4fcfab9d
gnu: python-gpg: Update to 1.10.0. 
* gnu/packages/gnupg.scm (python-gpg): Update to 1.10.0.
[arguments]: Add custom phase to set 'gcc' call.
 2018-12-26 12:29:48 +02:00
Efraim Flashner fb075e2fda
gnu: python-apache-libcloud: Update to 2.4.0. 
* gnu/packages/python.scm (python-apache-libcloud): Update to 2.4.0.
 2018-12-26 12:29:45 +02:00
Efraim Flashner cf51b828af
gnu: translate-shell: Wrap binary. 
* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Add custom
phase to wrap the 'trans' binary with the inputs.
[native-inputs]: Move curl, fribidi, rlwrap ...
[inputs]: ... to here.
 2018-12-25 22:05:51 +02:00
Efraim Flashner f76335740c
gnu: translate-shell: Update to 0.9.6.9. 
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.9.
 2018-12-25 22:05:51 +02:00
Efraim Flashner cfa3b7182d
gnu: translate-shell: Use 'git-fetch'. 
* gnu/packages/dictionaries.scm (translate-shell)[source]: Use
'git-fetch'.
[arguments]: Add custom phase to remove "translate" file.
 2018-12-25 22:05:48 +02:00
Gabriel Hondet 5895696e4c
gnu: Add dedukti. 
* gnu/packages/ocaml.scm (dedukti): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2018-12-25 18:47:37 +01:00
Meiyo Peng d8dcbcc91d
gnu: Add polybar. 
* gnu/packages/wm.scm (polybar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-25 17:14:49 +01:00
Rutger Helling 522d1b87bc
gnu: llvm@7.0.0: Update to 7.0.1. 
* gnu/packages/llvm.scm (llvm@7.0.0): Update to 7.0.1. Rename to llvm@7.0.1.
 2018-12-25 12:30:48 +01:00
Efraim Flashner 215a51e441
gnu: supertuxkart: Fix building with mesa@18.3. 
* gnu/packages/games.scm (supertuxkart)[arguments]: Add custom phase to
add newer '#define' to source.
 2018-12-25 11:11:36 +02:00
Efraim Flashner bbc94a08f3
gnu: glew: Update to 2.1.0. 
* gnu/packages/gl.scm (glew): Update to 2.1.0.
 2018-12-25 11:11:33 +02:00
Efraim Flashner 950ebfd116
gnu: librime: Remove bundled sources. 
* gnu/packages/ibus.scm (librime)[source]: Add snippet to remove bundled
sources.
[arguments]: Add custom phase to not search bundled headers.
[native-inputs]: Add googletest, xorgproto.
 2018-12-25 08:51:01 +02:00
Efraim Flashner 66b266e6df
gnu: librime: Update to 1.3.2. 
* gnu/packages/ibus.scm (librime): Update to 1.3.2.
 2018-12-25 08:50:58 +02:00
Ludovic Courtès 0b07f22728
gnu: bootstrap: Add missing 'supported-systems', remove extra 'match'. 
Previously evaluation would fail for armhf, aarch64, and mips64el.

* gnu/packages/bootstrap.scm (%bootstrap-mescc-tools)[supported-systems]:
New field.
(%bootstrap-mes)[supported-systems]: New field.
[inputs]: Remove 'match' form on %current-system, which would fail on
non-Intel platforms.
 2018-12-25 02:17:58 +01:00
Leo Famulari 5a3f32ca75
gnu: darktable: Update to 2.6.0. 
* gnu/packages/photo.scm (darktable): Update to 2.6.0.
 2018-12-24 18:01:36 -05:00
Efraim Flashner 7e48e8492a
gnu: gcompris-qt: Enable tests. 
* gnu/packages/education.scm (gcompris-qt)[arguments]: Add custom phase
to start X server before tests. Add configure flag to build tests.
Enable tests.
[native-inputs]: Add xorg-server.
 2018-12-24 22:19:40 +02:00
Efraim Flashner 3619b26196
gnu: gcompris-qt: Update to 0.95. 
* gnu/packages/education.scm (gcompris-qt): Update to 0.95.
[arguments]: Remove custom phase to patch for qt@5.11.
 2018-12-24 22:19:39 +02:00
Ludovic Courtès 78bc4eb627
gnu: guix: Update to 6f1e0bb. 
* gnu/packages/package-management.scm (guix): Update to 6f1e0bb.
 2018-12-24 18:48:19 +01:00
Ludovic Courtès 6f1e0bb792
gnu: commencement: Do not graft early bootstrap packages. 
This is a followup to e47c69f226 and a
repetition of f00b85ff8d.

* gnu/packages/commencement.scm (file-boot0): Use 'inherit' instead of
'package/inherit'.
 2018-12-24 18:18:24 +01:00
Gabriel Hondet 3c5e13642c
gnu: Add font-mononoki. 
* gnu/packages/fonts.scm (font-mononoki): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-24 16:20:32 +01:00
Hartmut Goebel 311462f642
gnu: Remove obsolete package gpgmepp. 
This package is unused, is part of gpgme since version 1.7 and has been marked
as superseded since 18 months now.

* gnu/packages/kde-frameworks.scm (gpgmepp): Remove variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-24 16:10:14 +01:00
Rutger Helling 8f5825540d
gnu: parallel: Update to 20181222. 
* gnu/packages/parallel.scm (parallel): Update to 20181222.
 2018-12-24 13:15:14 +01:00
Rutger Helling 09654adee7
gnu: wine-staging: Update to 4.0-rc3. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc3.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc3.
 2018-12-24 13:15:14 +01:00
Brendan Tildesley 19dd523c99
gnu: ardour: Sort inputs and native-inputs. 
* gnu/packages/audio.scm (ardour)[inputs]: Sort alphabetically.
[native-inputs]: Same.
 2018-12-24 12:05:04 +02:00
Brendan Tildesley 72d9ef1b0c
gnu: ardour: Add libusb input. 
* gnu/packages/audio.scm (ardour): [inputs]: add libusb.
 2018-12-24 12:04:18 +02:00
Brendan Tildesley ff46016e90
gnu: ardour: Add a phase to install Freedesktop files. 
* gnu/packages/audio.scm (ardour): [arguments]:
 - Correct comment about --freedesktop flag.
 - Adjust pretty printing for consistency.
 - Add 'install-free-desktop-files phase to actually install the files that
   were build. Fixes bug#33585 reported by baconicsynergy.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2018-12-24 12:04:02 +02:00
Efraim Flashner e47c69f226
gnu: file: Fix CVE-2018-10360. 
* gnu/packages/patches/file-CVE-2018-10360.patch: New file.
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use 'package/inherit' to
receive security fixes.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-24 11:12:52 +02:00
Ludovic Courtès dad2e7dc79
gnu: sed: Update to 4.7. 
* gnu/packages/base.scm (sed): Update to 4.7.
[arguments]: Remove.
 2018-12-24 01:39:52 +01:00
Ludovic Courtès b659e97adc
gnu: grep: Update to 3.3. 
* gnu/packages/base.scm (grep): Update to 3.3.
[arguments]: Remove 'disable-failing-tests' phase.
 2018-12-24 01:39:17 +01:00
Hartmut Goebel 450226ebc1
gnu: baloo: Fix build. 
The substitute for removing a failing test did no longer work since
the way the test is included changed in v5.45.0: Formerly the test
has listed, now there is a separate statement for this test.

* gnu/package/kde-frameworks.scm((baloo)[arguments]<#phases>: Change
  substitute in phase 'remove-failing-test'.
 2018-12-23 23:42:49 +01:00
Marius Bakke 6bd8ba619d
gnu: zathura: Update to 0.4.3. 
* gnu/packages/patches/zathura-plugindir-environment-variable.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/pdf.scm (zathura): Update to 0.4.3.
[source](patches): Remove.
[native-search-paths]: Adjust for upstreamed patch.
 2018-12-23 23:26:30 +01:00
Marius Bakke e59a9cf7f0
gnu: girara: Update to 0.3.2. 
* gnu/packages/gtk.scm (girara): Update to 0.3.2.
 2018-12-23 23:26:30 +01:00
Marius Bakke 02bf685d00
Merge branch 'master' into staging 2018-12-23 23:26:04 +01:00
Marius Bakke 8f2253af7d
gnu: libetpan: Update to 1.9.2. 
* gnu/packages/mail.scm (libetpan): Update to 1.9.2.
 2018-12-23 23:22:20 +01:00
Marius Bakke 37c1cf89fd
gnu: vips: Update synopsis and description. 
* gnu/packages/image-processing.scm (vips)[synopsis]: Remove leading article.
[description]: Add punctuation.
 2018-12-23 23:22:20 +01:00
Marius Bakke 684633e2cf
gnu: offlineimap: Update home page. 
* gnu/packages/mail.scm (offlineimap)[home-page]: Use HTTPS.
 2018-12-23 23:22:20 +01:00
Marius Bakke 081915c15b
gnu: offlineimap: Update to 7.2.2. 
* gnu/packages/mail.scm (offlineimap): Update to 7.2.2.
 2018-12-23 23:22:20 +01:00
Marius Bakke bc7c9f7770
gnu: offlineimap: Fetch sources from git. 
* gnu/packages/mail.scm (offlineimap)[source]: Use GIT-FETCH.
 2018-12-23 23:22:20 +01:00
Marius Bakke 5f5782311e
gnu: pingus: Update home page. 
* gnu/packages/games.scm (pingus)[home-page]: Use HTTPS and no file name.
 2018-12-23 23:22:19 +01:00
Amin Bandali fa574a6d43
gnu: z3: Update to 4.8.3 and provide python3 bindings 
* gnu/packages/maths.scm (z3): Update to 4.8.3.
[build-system]: Switch from cmake to make, and use the current
scripts/mk_make.py build script instead of the now-deprecated
contrib/cmake/bootstrap.py.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-23 22:14:15 +01:00
Ludovic Courtès f5301f005a
gnu: Remove conkeror. 
* gnu/packages/conkeror.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/gnuzilla.scm (conkeror): New variable.
 2018-12-23 22:14:15 +01:00
Alex Kost 1a1b54b5bd
gnu: emacs-guix: Update to 0.5.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.
 2018-12-23 22:49:12 +03:00
Efraim Flashner 472c36bd36
gnu: pingus: Fix building. 
* gnu/packages/games.scm (pingus)[source]: Use 'git-fetch'. Add patch to
update used boost headers.
* gnu/packages/patches/pingus-boost-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-23 21:41:16 +02:00
Efraim Flashner 9a1ef44ec2
gnu: yaml-cpp: Don't provide gtest libraries or headers. 
* gnu/packages/serialization.scm (yaml-cpp)[arguments]: Add a custom
phase to remove installed googletest shared libraries and headers.
 2018-12-23 20:55:06 +02:00
Efraim Flashner 6556c00afa
gnu: librime: Remove bundled sources. 
* gnu/packages/ibus.scm (librime)[source]: Add snippet to remove bundled
sources.
[arguments]: Add custom phase to not search bundled headers.
[native-inputs]: Add googletest, xorgproto.
 2018-12-23 20:50:54 +02:00
Efraim Flashner ca0757c607
gnu: librime: Update to 1.3.2. 
* gnu/packages/ibus.scm (librime): Update to 1.3.2.
 2018-12-23 20:50:53 +02:00
Efraim Flashner cd9f99f107
gnu: mesa: Enable more gallium drivers for armhf and aarch64. 
* gnu/packages/gl.scm (mesa)[arguments]: Enable more etnaviv-based
drivers on armhf-linux and aarch64-linux.
 2018-12-23 20:50:53 +02:00
Efraim Flashner 0e7e042d82
gnu: libdrm: Enable etnaviv api for armhf and aarch64. 
* gnu/packages/xdisorg.scm (libdrm)[arguments]: Add configure-flag for
armhf-linux and aarch64-linux to enable etnaviv api.
 2018-12-23 20:50:50 +02:00
Efraim Flashner 1506d491f9
gnu: opencc: Unbundle rapidjson. 
* gnu/packages/textutils.scm (opencc)[source]: Add snippet to remove
rapidjson.
[arguments]: Add custom phase to substitute rapidjson.
[native-inputs]: Add rapidjson.
 2018-12-23 19:48:24 +02:00
Efraim Flashner bf5af9342c
gnu: opencc: Use 'git-fetch'. 
* gnu/packages/textutils.scm (opencc)[source]: Use 'git-fetch'.
 2018-12-23 19:48:21 +02:00
Tobias Geerinckx-Rice 23ae876b91
gnu: claws-mail: Update to 3.17.3. 
* gnu/packages/mail.scm (claws-mail): Update to 3.17.3.
 2018-12-23 17:57:07 +01:00
Tobias Geerinckx-Rice ca6f5ab817
gnu: claws-mail: Don't use NAME in source URI. 
* gnu/packages/mail.scm (claws-mail)[source]: Hard-code name.
 2018-12-23 17:57:07 +01:00
Efraim Flashner b83ddd03d9
gnu: datamash: Update to 1.4. 
* gnu/packages/datamash.scm (datamash): Update to 1.4.
[source]: Remove patch.
* gnu/packages/patches/datamash-arm-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-12-23 16:37:51 +02:00
Pierre Neidhardt fc1f3f2547
gnu: sbcl-next: Update inputs for 1.2.0. 
* gnu/packages/web-browsers.scm (sbcl-next)[inputs]: Update for 1.2.0.
 2018-12-23 12:05:12 +01:00
Pierre Neidhardt 194d1ec336
gnu: next-gtk-webkit: Update to 1.2.0. 
* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.2.0.
 2018-12-23 12:04:56 +01:00
Mark H Weaver 2cd8c24ec3
gnu: linux-libre: Update to 4.19.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.12.
(%linux-libre-hash): Update hash.
 2018-12-22 23:56:55 -05:00
Mark H Weaver 97f67f9da0
gnu: linux-libre@4.14: Update to 4.14.90. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.90.
(%linux-libre-4.14-hash): Update hash.
 2018-12-22 23:55:50 -05:00
Mark H Weaver 37467b2dc1
gnu: linux-libre@4.9: Update to 4.9.147. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.147.
 2018-12-22 23:55:17 -05:00
Mark H Weaver bd0ea1b000
gnu: linux-libre@4.4: Update to 4.4.169. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.169.
 2018-12-22 23:53:33 -05:00
Oleg Pykhalov 6247431b70
gnu: entr: Fix typo in description. 
* gnu/packages/entr.scm (entr)[description]: Fix typo.
 2018-12-22 18:01:24 +03:00
Marius Bakke f30830b2e6
Merge branch 'master' into staging 2018-12-22 15:26:30 +01:00
Ludovic Courtès 25ec3684e3
gnu: guix: Update to bdf860c. 
* gnu/packages/package-management.scm (guix): Update to bdf860c.
 2018-12-22 00:26:41 +01:00
Eric Bavier 947babea72
gnu: ncmpc: Update to 0.33. 
* gnu/packages/mpd.scm (ncmpc): Update to 0.33.
[source]: Use 'version-major' instead of string-splitting.
 2018-12-21 16:19:35 -06:00