This is a follow-up to commit 18ab54d4a2
and fixes a regression introduced by Nyx 2.0.4 + Python 3.
* gnu/packages/tor.scm (nyx)[source]: Add patch.
* gnu/packages/patches/nyx-show-header-stats-with-python3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/ocaml-enable-ocamldoc-reproducibility.patch: New
file.
* gnu/packages/ocaml.scm (ocaml)[origin]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/openblas-fix-tests-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/maths.scm (openblas)[native-inputs]: Add it.
[arguments]: Add phase to apply it on i686 systems only.
* gnu/packages/games.scm (mrrescue)[arguments]: Extract & patch the game
data, and point ‘love’ to this modified copy. Minor cosmetic tweaks.
[native-inputs]: Add unzip, patch, and the love-11.patch which is...
* gnu/packages/patches/mrrescue-support-love-11.patch: ...a new file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/qemu-CVE-2018-11806.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu/packages/patches/upx-protect-against-bad-crafted-input.patch: New file.
* gnu/packages/compression.scm (upx)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/perl.scm (perl-5.26.2)[source](patches): Use it.
* gnu/packages/patches/binutils-aarch64-symbol-relocation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (binutils/fixed): New public variable.
* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: On aarch64, define
new ld-wrapper with the above binutils and use it.
* gnu/packages/patches/bind-CVE-2018-5738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dns.scm (isc-bind)[source]: Use it.
Previously, due to issues in the erlang package, many tests would fail, and
the package would also nondeterministically fail to build. This is now
fixed (by patching occurrences of /bin/sh in the erlang package), so all the
tests can be run.
* gnu/packages/elixir.scm (elixir)[source]: Remove patches.
[arguments]: Remove the fix-or-disable-tests phase. Add a new set-home phase
to set the HOME environment variable prior to running the tests.
* gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file.
* gnu/local.mk: Remove now deleted patch.
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Use it.
Reported by Mark H Weaver <mhw@netris.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31708#10>.
* gnu/packages/patches/doxygen-gcc-ice.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/documentation.scm (doxygen)[inputs]: Add "gcc-ice-patch"
on armhf-* only.
[arguments]: Add 'apply-gcc-patch' phase on armhf-* only.
* gnu/packages/patches/opensmtpd-fix-crash.patch: New patch.
* gnu/packages/mail.scm (opensmtpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
Works around <https://bugs.gnu.org/31708>.
* gnu/packages/patches/perf-gcc-ice.patch: New patch.
* gnu/packages/linux.scm (perf)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
The update to Qt 5.11.0 broke libmygpo-qt. It turned it was using a deprecated
CMake function (qt5_use_moduldes). Let's pick up two upstream patches that
fix the issue: https://github.com/gpodder/libmygpo-qt/pull/15
As mentioned in the the pull request, there is now a test failure but it looks
harmless.
* gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch,
gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/music.scm (libmygpo-qt)[source]: Add patches.
[arguments]: Build tests but do not run them.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu/packages/patches/alsa-lib-add-environment-variable.patch: New
file.
* gnu/packages/linux.scm (alsa-lib)[source]: Use it.
[native-search-paths]: Add ALSA_PLUGIN_DIR.
* gnu/local.mk (dist_patch_DATA): Add it.
Document the fact that we include fixes for CVE-2018-5154, CVE-2018-5155,
CVE-2018-5157, CVE-2018-5158, CVE-2018-5159, CVE-2018-5168, CVE-2018-5178,
and 9/10 changesets for CVE-2018-5150.
* gnu/packages/gnuzilla.scm (icecat)[source]: Relabel patches to reflect CVE
assignments.
* gnu/packages/patches/icecat-bug-1452075.patch: Rename to...
* gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch: ...this.
* gnu/local.mk (dist_patch_DATA): Rename it.
* gnu/packages/patches/libutils-add-includes.patch: New file.
* gnu/packages/patches/libutils-remove-damaging-includes.patch: New file.
* gnu/packages/android.scm (android-platform-system-core): Use them.
(android-libutils): New variable.
* gnu/local.mk: Add them.
* gnu/packages/android.scm (android-libziparchive): New variable.
* gnu/packages/patches/libziparchive-add-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/wesnoth-fix-std-bad-cast.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (wesnoth): Update to 1.14.0.
[source]: Add wesnoth-fix-std-bad-cast.patch to patches.
[arguments]: Remove "-DENABLE_STRICT_COMPILATION=OFF" configure flag.
[inputs]: Remove sdl-image, sdl-mixer, sdl-net and sdl-ttf. Add openssl and
sdl-union of sdl2, sdl2-image, sdl2-mixer and sdl2-ttf.
[home-page]: Use HTTPS URI.
(wesnoth-server)[inputs]: Remove sdl-net. Add icu4c, openssl and sdl2.
[arguments]: Remove delete-data phase. Since wesnoth 1.14.0, configure flag
"-DENABLE_GAME=OFF" disables installation of game assets.
* gnu/packages/patches/strace-kernel-4.16.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (strace)][source](patches): New field.
* gnu/packages/gimp.scm (gegl): Update to 0.4.
[inputs]: Move babl and glib to propagated-inputs.
[propagated-inputs]: Add json-glib.
[arguments]: Re-enable the tests and remove the obsolete 'pre-build'
phase.
[source]: Use HTTPS URL.
* gnu/packages/patches/gegl-CVE-2012-4433.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/networking.scm (amule): New public variable.
* gnu/packages/patches/amule_crypto-6.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes
from the upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1452075.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/package/java.scm (java-apache-ivy): New variable.
* gnu/packages/patches/java-apache-ivy-port-to-latest-bouncycastle.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/qemu-CVE-2018-7550.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu/packages/music.scm (libmygpo-qt): Update to 1.1.0.
[source]: Remove 'patches'.
[arguments]: Do not set BUILD_WITH_QT4=OFF, it is the default.
* gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu/packages/patches/sharutils-CVE-2018-1000097.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (sharutils)[source](patches): Use it.
* gnu/packages/patches/mupen64plus-video-z64-glew-correct-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emulators.scm (mupen64plus-video-z64)[source]: Use it.
* gnu/packages/patches/datamash-arm-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/datamash.scm (datamash)[source]: Use it.
* gnu/packages/patches/boost-fix-icu-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/boost.scm (boost)[source]: Add the patch.
[arguments]: In the custom configure phase, pass --with-icu=[...]
to ./bootstrap.sh
* gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch: New file.
* gnu/packages/base.scm (glibc/linux)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (delly): New variable.
* gnu/packages/patches/delly-use-system-libraries.patch: New file.
* gnu/local.mk: Include delly-use-system-libraries.patch.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/elogind-glibc-2.27.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/freedesktop.scm (elogind)[source]: Add patch.
[arguments]: Replace the bootstrap phase with what was previously the
autogen phase.
* gnu/packages/patches/make-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (gnu-make)[source](patches): Use it.
* gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-gdbm-ffi)[inputs]: Move above arguments. Add
the patch, and the 'patch' program.
[propagated-inputs]: Move above arguments.
[arguments]: In the builder, add code to apply the patch.
* gnu/packages/patches/util-linux-CVE-2018-7738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
* gnu/packages/patches/shadow-CVE-2018-7169.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shadow)[source]: Use it.
* gnu/packages/patches/java-jeromq-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (java-jeromq)[source](patches): Add it.
[arguments](#test-exclude): Disable more failing tests.
Rename the function and move the declaration from gif_lib.h to
gif_lib_private.h to solve conflicts when some .c-file #includes
both stdlib.h and gif_lib.h.
See also https://sourceforge.net/p/giflib/bugs/110/
* gnu/packages/patches/giflib-make-reallocarray-private.patch: New
file
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/image.scm(giflib)[source](patches): New field.
* gnu/packages/patches/gnome-todo-libical-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-todo)[source](patches): Use it.
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
* gnu/packages/patches/json-glib-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (json-glib)[source](patches): New field.
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
This release claims to fix 2 vulnerabilities:
- ‘an integer overflow vulnerability in the TIFF decoder’
(CVE-2017-1000229, previously patched in Guix), and
- ‘a buffer overflow vulnerability in the GIF decoder’.
* gnu/packages/image.scm (optipng): Update to 0.7.7.
[source]: Remove patch.
[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/htop-fix-process-tree.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (htop)[source]: Use it.
* gnu/packages/patches/freetype-CVE-2018-6942.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (freetype)[replacement]: New field.
(freetype/fixed): New variable.
Transfer the applicable NixOS patches as of 2018-01-19:
- Not adopted: We don't change the .cmake.in and .prf, but use config
mechanisms provided by th Qt build system.
- src/corelib/tools/qtimezoneprivate_tz.cpp: Adopted patch: Use $TZDIR to
search for time-zone data. Thus avoid depending on package "tzdata", which
often introduces changes with near-immediate effects, so it's important to
be able to update it fast.
- src/corelib/kernel/qcoreapplication.cpp: Not adopted: NixOS adds plugin
paths derived from PATH. We do not need this, since we already have
native-search-path QT_PLUGIN_PATH.
- src/network/kernel/qdnslookup_unix.cpp,
src/network/kernel/qhostinfo_unix.cpp: Transferred: Use hard-coded path to
libresolv.
- src/network/ssl/qsslcontext_openssl.cpp: Not adopted: NixOS changes a
conditional compilation for Qt 5.9 (but leaves it unchanged for Qt 5.10) to
fix compilation with libressl. But Qt does not support libressl anway, see
config.tests/openssl/openssl.cpp in qtbase 5.9.4.
- src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp:
Transferred: Use hard-coded path to libx11.
- src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp:
Transferred: Use hard-coded path to mess's libGL, no need for a fall-back.
- src/plugins/platforms/xcb/qxcbcursor.cpp: Transferred: Use hard-coded path
to Xcursor.
- src/plugins/platformthemes/gtk3/main.cpp: Not adopted: NixOS changes
$XDG_DATA_DIRS and $GIO_EXTRA_MODULES in the code. We already have a
search-path-specification for this.
- src/testlib/qtestassert.h: Decided not to adopt this for guix.
* gnu/packages/patches/qtbase-use-TZDIR.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtbase): Add comment. [source]: Use new patch.
[arguments]<#:phases>'patch-paths': New phase.
This was causing segfaults in the MH test suite when building with
glibc 2.26 on x86_64.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (mailutils)[source](patches, snippet): New
fields.
[native-inputs]: New field.
* gnu/packages/patches/gcc-4.9-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/python-waitress-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-waitress): Update to 1.1.0.
[source](patches): New field.
This fixes the security issues described at
https://www.ruby-lang.org/en/news/2018/02/17/multiple-vulnerabilities-in-
rubygems/
* gnu/packages/patches/ruby-rubygems-276-for-ruby24.patch: New file.
* gnu/packages/ruby.scm (ruby-2.4.3)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
Add a patch by Ludovic Courtès <ludo@gnu.org> from the upstream
shepherd repository to partially fix <https://bugs.gnu.org/30299>.
* gnu/packages/patches/shepherd-herd-status-sorted.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Add patch.
Tobias Geerinckx-Rice