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346 Commits

Author SHA1 Message Date
Ricardo Wurmus 0968a44874
gnu: r-ripseeker: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 4c221b3bbf
gnu: r-diffbind: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus e02162f7ba
gnu: r-qvalue: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 3e1bc88c1f
gnu: r-geneplotter: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 4b53d55e98
gnu: r-regioner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus 43a23a0733
gnu: r-hpar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 0c53332a27
gnu: r-annotate: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus 81a1c45df5
gnu: r-biocgenerics: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus fbf3494972
gnu: Add r-biocfilecache. 
* gnu/packages/bioconductor.scm (r-biocfilecache): New variable.
 2019-05-06 00:14:39 +02:00
Ricardo Wurmus 993912905d
gnu: Add r-biocsingular. 
* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
 2019-05-06 00:14:28 +02:00
Tobias Geerinckx-Rice 9b19734c50
gnu: r-yamss: Fix typo in description. 
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
 2019-04-25 04:42:16 +02:00
Ricardo Wurmus 2da8588ebc
gnu: r-mlinterfaces: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.62.1.
 2019-04-06 23:13:26 +02:00
Ricardo Wurmus bb94f7257e
gnu: r-inspect: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.2.
 2019-04-06 23:13:26 +02:00
Ricardo Wurmus 307586c1e3
gnu: Add r-arrmnormalization. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus b50c966087
gnu: Add r-arrmdata. 
* gnu/packages/bioconductor.scm (r-arrmdata): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus 5622628fd1
gnu: Add r-progeny. 
* gnu/packages/bioconductor.scm (r-progeny): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus 2bdc88fce7
gnu: Add r-rbowtie2. 
* gnu/packages/bioconductor.scm (r-rbowtie2): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus 9800d859a7
gnu: Add r-zfpkm. 
* gnu/packages/bioconductor.scm (r-zfpkm): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus 6b12f21363
gnu: Add r-webbioc. 
* gnu/packages/bioconductor.scm (r-webbioc): New variable.
 2019-04-03 17:42:18 +02:00
Ricardo Wurmus 7b5101c5bf
gnu: Add r-widgettools. 
* gnu/packages/bioconductor.scm (r-widgettools): New variable.
 2019-04-03 17:42:17 +02:00
Ricardo Wurmus b9b8b447ec
gnu: Add r-wiggleplotr. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): New variable.
 2019-04-03 17:42:17 +02:00
Ricardo Wurmus 8830664d61
gnu: Add r-wrench. 
* gnu/packages/bioconductor.scm (r-wrench): New variable.
 2019-04-03 17:42:17 +02:00
Ricardo Wurmus ec12e53736
gnu: Add r-xcms. 
* gnu/packages/bioconductor.scm (r-xcms): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus c8310056f4
gnu: Add r-massspecwavelet. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus 50d9177051
gnu: Add r-xbseq. 
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus a6e1eb1a96
gnu: Add r-roar. 
* gnu/packages/bioconductor.scm (r-roar): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus 98a2af31a8
gnu: Add r-yarn. 
* gnu/packages/bioconductor.scm (r-yarn): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus 59cf26292f
gnu: Add r-quantro. 
* gnu/packages/bioconductor.scm (r-quantro): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus f562c90aa8
gnu: Add r-yaqcaffy. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus 4675b3cfa3
gnu: Add r-simpleaffy. 
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus e99380d67b
gnu: Add r-gcrma. 
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus 303f2ed1c6
gnu: Add r-yapsa. 
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus 28098414d0
gnu: Add r-somaticsignatures. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus 398c4a9347
gnu: Add r-gtrellis. 
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus 51e98f7e0f
gnu: Add r-yamss. 
* gnu/packages/bioconductor.scm (r-yamss): New variable.
 2019-03-29 19:28:11 +01:00
Ricardo Wurmus 5cfa4bff69
gnu: Add r-ebimage. 
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
 2019-03-29 19:28:03 +01:00
Ricardo Wurmus ffe7029bab
gnu: Add r-aucell. 
* gnu/packages/bioconductor.scm (r-aucell): New variable.
 2019-03-29 18:10:46 +01:00
Ricardo Wurmus f31e10f82e
gnu: Add r-allelicimbalance. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
 2019-03-29 18:07:17 +01:00
Ricardo Wurmus adf7d8135b
gnu: Add r-annotationtools. 
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
 2019-03-29 18:05:45 +01:00
Ricardo Wurmus 0b91b7b969
gnu: Add r-annotationfuncs. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
 2019-03-29 17:49:54 +01:00
Ricardo Wurmus 9bf4bb19c9
gnu: Add r-abaenrichment. 
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus 3972cfce6a
gnu: Add r-gofuncr. 
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus 692bce1595
gnu: Add r-abadata. 
* gnu/packages/bioconductor.scm (r-abadata): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus 32e0f906d7
gnu: Add r-atacseqqc. 
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus e5bff3079d
gnu: Add r-genomicscores. 
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 2a72ef561b
gnu: Add r-motifstack. 
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 229f97c37a
gnu: Add r-motiv. 
* gnu/packages/bioconductor.scm (r-motiv): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 051e8e1a5b
gnu: Add r-rgadem. 
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus 41aab7d186
gnu: Add r-bacon. 
* gnu/packages/bioconductor.scm (r-bacon): New variable.
 2019-03-29 17:13:41 +01:00
Ricardo Wurmus 59d331f16a
gnu: Add r-abseqr. 
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
 2019-03-29 06:35:57 +01:00
Ricardo Wurmus 84ad024e2d
gnu: Add r-a4. 
* gnu/packages/bioconductor.scm (r-a4): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus dbfe337586
gnu: Add r-a4base. 
* gnu/packages/bioconductor.scm (r-a4base): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 8e15f86139
gnu: Add r-a4reporting. 
* gnu/packages/bioconductor.scm (r-a4reporting): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus b8d13e2c0e
gnu: Add r-a4preproc. 
* gnu/packages/bioconductor.scm (r-a4preproc): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 9ae37581e0
gnu: Add r-a4classif. 
* gnu/packages/bioconductor.scm (r-a4classif): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus 0ec0a5ecc9
gnu: Add r-a4core. 
* gnu/packages/bioconductor.scm (r-a4core): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus a793e88c5e
gnu: Add r-annaffy. 
* gnu/packages/bioconductor.scm (r-annaffy): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus ce77562a9e
gnu: Add r-mlinterfaces. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus f8295ee6de
gnu: Add r-clusterprofiler. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus 9c30cf65d2
gnu: Add r-enrichplot. 
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus 305050b56d
gnu: Add r-dose. 
* gnu/packages/bioconductor.scm (r-dose): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus f8a5af4653
gnu: Add r-do-db. 
* gnu/packages/bioconductor.scm (r-do-db): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus af26c7ae70
gnu: Add r-fgsea. 
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus a6d867fed9
gnu: Add r-sigpathway. 
* gnu/packages/bioconductor.scm (r-sigpathway): New variable.
 2019-03-25 16:20:04 +01:00
Ricardo Wurmus 9d0f794229
gnu: Add r-anota. 
* gnu/packages/bioconductor.scm (r-anota): New variable.
 2019-03-25 16:20:00 +01:00
Ricardo Wurmus c04f230eb3
gnu: Add r-gosemsim. 
* gnu/packages/bioconductor.scm (r-gosemsim): New variable.
 2019-03-25 16:19:52 +01:00
Ricardo Wurmus 3e41919d51
gnu: Add r-heatplus. 
* gnu/packages/bioconductor.scm (r-heatplus): New variable.
 2019-03-25 16:19:40 +01:00
Ricardo Wurmus c538bcdd38
gnu: Add r-varianttools. 
* gnu/packages/bioconductor.scm (r-varianttools): New variable.
 2019-03-25 16:09:16 +01:00
Ricardo Wurmus 8a5460b4fb
gnu: Add r-triform. 
* gnu/packages/bioconductor.scm (r-triform): New variable.
 2019-03-25 16:09:07 +01:00
Ricardo Wurmus 80eb01c776
gnu: r-gkmsvm: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gkmsvm): Move from here...
* gnu/packages/bioconductor.scm (r-gkmsvm): ...to here.
 2019-03-25 14:34:41 +01:00
Ricardo Wurmus 877fd189c4
gnu: r-annotate: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
 2019-03-20 22:31:59 +01:00
Ricardo Wurmus e4a17532f9
gnu: Add r-ioniser. 
* gnu/packages/bioconductor.scm (r-ioniser): New variable.
 2019-03-15 10:58:05 +01:00
Ricardo Wurmus 4291f36a22
gnu: Add r-linnorm. 
* gnu/packages/bioconductor.scm (r-linnorm): New variable.
 2019-03-13 17:13:21 +01:00
Ricardo Wurmus 9475a248fc
gnu: Add r-illuminahumanmethylationepicmanifest. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest):
New variable.
 2019-03-13 13:49:20 +01:00
Ricardo Wurmus 09605cb2d1
gnu: Add r-lumi. 
* gnu/packages/bioconductor.scm (r-lumi): New variable.
 2019-03-13 13:35:40 +01:00
Ricardo Wurmus 5ec5ba0272
gnu: Add r-methylumi. 
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
 2019-03-13 13:35:33 +01:00
Ricardo Wurmus 0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
 2019-03-13 13:35:18 +01:00
Ricardo Wurmus 0fbaf1956b
gnu: Add r-minfi. 
* gnu/packages/bioconductor.scm (r-minfi): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 34a24f95ec
gnu: Add r-bumphunter. 
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f4eac09653
gnu: Add r-siggenes. 
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus eed6ff0358
gnu: Add r-illuminaio. 
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f9201d6704
gnu: Add r-geoquery. 
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f088775799
gnu: Add r-scone. 
* gnu/packages/bioconductor.scm (r-scone): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus b409c3570f
gnu: Add r-scdd. 
* gnu/packages/bioconductor.scm (r-scdd): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 6213e44185
gnu: Add r-noiseq. 
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 2d7627cfff
gnu: Add r-monocle. 
* gnu/packages/bioconductor.scm (r-monocle): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 925fcdbb79
gnu: Add r-mast. 
* gnu/packages/bioconductor.scm (r-mast): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 251e08301a
gnu: Add r-icobra. 
* gnu/packages/bioconductor.scm (r-icobra): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 704de8f5ee
gnu: Add r-ihw. 
* gnu/packages/bioconductor.scm (r-ihw): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 2cb71d81a4
gnu: Add r-lpsymphony. 
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 3087a2f37b
gnu: Add r-ebseq. 
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 7ed869f796
gnu: Add r-nbpseq. 
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 173c99601a
gnu: Add r-deds. 
* gnu/packages/bioconductor.scm (r-deds): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4dc2ecc279
gnu: r-qvalue: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-qvalue): Move from here...
* gnu/packages/bioconductor.scm (r-qvalue): ...to here.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 557a1089c6
gnu: Add r-hsmmsinglecell. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
 2019-03-08 09:30:00 +01:00
Ricardo Wurmus 8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
 2019-03-06 21:43:33 +01:00
Ricardo Wurmus d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
 2019-03-06 21:42:39 +01:00
Ricardo Wurmus f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
 2019-03-06 21:41:48 +01:00
Ricardo Wurmus 3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
 2019-03-06 21:35:20 +01:00
Ricardo Wurmus 7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
 2019-03-06 21:33:17 +01:00
Ricardo Wurmus 13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
 2019-03-06 21:31:41 +01:00
Ricardo Wurmus 0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
 2019-03-06 21:30:30 +01:00
Ricardo Wurmus b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
 2019-03-06 21:29:20 +01:00
Ricardo Wurmus c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
 2019-03-06 21:26:54 +01:00
Ricardo Wurmus 5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
 2019-03-06 21:25:18 +01:00
Ricardo Wurmus fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
 2019-03-06 21:23:42 +01:00
Ricardo Wurmus 40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
 2019-03-06 21:23:20 +01:00
Ricardo Wurmus 66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
 2019-03-06 21:16:33 +01:00
Ricardo Wurmus bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
 2019-03-06 21:13:38 +01:00
Ricardo Wurmus 3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
 2019-03-06 21:07:49 +01:00
Ricardo Wurmus 6aa896d82e
gnu: Update copyright headers. 
This is a follow-up to commit 1fe9a36173.

* gnu/packages/bioconductor.scm: Update copyright header to account for moved
package.
 2019-03-06 21:07:49 +01:00
Ricardo Wurmus 3dad6087be
gnu: Add r-org-dr-eg-db. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
 2019-03-06 10:29:25 +01:00
Ricardo Wurmus 3a0babacdc
gnu: Add r-htscluster. 
* gnu/packages/bioconductor.scm (r-htscluster): New variable.
 2019-03-04 15:00:18 +01:00
Ricardo Wurmus c18dccffa2
gnu: Add r-dnacopy. 
* gnu/packages/bioconductor.scm (r-dnacopy): New variable.
 2019-02-12 15:41:02 +01:00
Ricardo Wurmus 14bba460ab
gnu: r-biocgenerics: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus 7097c7009d
gnu: r-annotate: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus c86fc96987
gnu: r-inspect: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus cad6fb2dec
gnu: Add r-plgem. 
* gnu/packages/bioconductor.scm (r-plgem): New variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 45dcd7dcfd
gnu: r-rots: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 0b469ee225
gnu: r-glimma: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 7f2b1c4af0
gnu: r-goseq: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus add2b19561
gnu: r-chippeakanno: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus 41ffc214e4
gnu: Add r-chipexoqual. 
* gnu/packages/bioconductor.scm (r-chipexoqual): New variable.
 2018-11-27 23:56:23 +01:00
Ricardo Wurmus a961ae469c
gnu: Add r-destiny. 
* gnu/packages/bioconductor.scm (r-destiny): New variable.
 2018-11-09 17:15:31 +01:00
Ricardo Wurmus 8a587c89af
gnu: Add r-savr. 
* gnu/packages/bioconductor.scm (r-savr): New variable.
 2018-11-09 16:45:21 +01:00
Ricardo Wurmus d639d8884c
gnu: r-regioner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 286157dc49
gnu: Add r-biocneighbors. 
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 318bcbc451
gnu: r-dnabarcodes: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6f1e1d0f88
gnu: r-inspect: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus c348cfed74
gnu: r-rots: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 016afac30f
gnu: r-glimma: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6ea9ae9c39
gnu: r-goseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus b858338c76
gnu: r-ctc: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus bbc4787cf2
gnu: r-interactionset: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus c4fed658a9
gnu: r-riboseqr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus e22e462b33
gnu: r-riboprofiling: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus e9427b2c78
gnu: r-ripseeker: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus aa802eafb6
gnu: r-chipcomp: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 4728e27511
gnu: r-bayseq: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 14520b640e
gnu: r-graph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 95ee4a466b
gnu: r-multtest: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus a92f523026
gnu: r-qdnaseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 9add0933d0
gnu: r-cghcall: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 46cdceef4c
gnu: r-cghbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus f1c606ce8c
gnu: r-marray: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 98652568a4
gnu: r-diffbind: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus 6168692159
gnu: r-hpar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus 09aa3d063a
gnu: Add r-ruvseq. 
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
 2018-10-22 13:00:24 +02:00
Ricardo Wurmus f6e9976393
gnu: Add r-dnabarcodes. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.
 2018-10-08 14:19:04 +02:00
Ricardo Wurmus 35c076e619
gnu: r-chippeakanno: Update to 3.14.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
 2018-09-09 22:26:02 +02:00
Ricardo Wurmus a207bca2ad
gnu: r-codedepends: Move from cran to bioconductor. 
* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
 2018-09-05 20:03:08 +02:00
Ricardo Wurmus 5dfe491290
gnu: r-graph: Move from bioinformatics to bioconductor. 
* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
 2018-09-05 20:03:08 +02:00
Ricardo Wurmus 65050163e0
gnu: r-chippeakanno: Update to 3.14.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.1.
 2018-09-05 20:03:03 +02:00
Ricardo Wurmus b64ce4b725
gnu: Add r-inspect. 
* gnu/packages/bioconductor.scm (r-inspect): New variable.
 2018-08-16 17:04:13 +02:00
Ricardo Wurmus aa388dc7b9
gnu: Add r-rots. 
* gnu/packages/bioconductor.scm (r-rots): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus f4235c0eca
gnu: Add r-glimma. 
* gnu/packages/bioconductor.scm (r-glimma): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 5da0e14285
gnu: Add r-goseq. 
* gnu/packages/bioconductor.scm (r-goseq): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 27c51606ae
gnu: Add r-ctc. 
* gnu/packages/bioconductor.scm (r-ctc): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus 2cc5110832
gnu: Add r-genelendatabase. 
* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
 2018-07-05 15:08:44 +02:00
Ricardo Wurmus cf9a29b24c
gnu: Add r-genomicinteractions. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
 2018-06-15 09:14:01 +02:00
Ricardo Wurmus a32279ffb6
gnu: Add r-interactionset. 
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
 2018-06-15 09:14:01 +02:00
Ricardo Wurmus 6ffdfe6a01
gnu: Add r-riboseqr. 
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
 2018-06-15 07:43:23 +02:00
Ricardo Wurmus 0490f9de88
gnu: Add r-riboprofiling. 
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 609f4ad12f
gnu: Add r-chipcomp. 
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 2bece692a6
gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New
variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 6fbd759b13
gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New
variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus dfac7eb917
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked):
New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus bb15b581f7
gnu: Add r-bayseq. 
* gnu/packages/bioconductor.scm (r-bayseq): New variable.
 2018-06-15 07:43:22 +02:00
Ricardo Wurmus 81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 5c0df206cf
gnu: r-cghcall: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 205df4a4cb
gnu: r-cghbase: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 6748708883
gnu: r-marray: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus f794e85daa
gnu: r-chippeakanno: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 43734b4727
gnu: r-ripseeker: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 45bbccf4e7
gnu: r-diffbind: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 72427c721d
gnu: r-regioner: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 2f5b3d8e90
gnu: r-hpar: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 183db725a4
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm6. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6): New variable.
 2018-05-15 12:56:53 +02:00
Tobias Geerinckx-Rice f39938b177
gnu: r-multtest: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.36.0.
 2018-05-04 02:22:01 +02:00
Roel Janssen 0ef8cc9c1c
gnu: Add r-qdnaseq. 
* gnu/packages/bioconductor.scm (r-qdnaseq): New variable.
 2018-04-24 14:12:32 +02:00
Roel Janssen 67ee83d6c3
gnu: Add r-cghcall. 
* gnu/packages/bioconductor.scm (r-cghcall): New variable.
 2018-04-24 14:12:15 +02:00
Roel Janssen 0416a0d4d5
gnu: Add r-cghbase. 
* gnu/packages/bioconductor.scm (r-cghbase): New variable.
 2018-04-24 14:11:51 +02:00
Roel Janssen 164502d819
gnu: Add r-marray. 
* gnu/packages/bioconductor.scm (r-marray): New variable.
 2018-04-24 14:11:19 +02:00
Roel Janssen 793f83efe1
gnu: Add r-chippeakanno. 
* gnu/packages/bioconductor.scm (r-chippeakanno): New variable.
 2018-04-24 13:59:39 +02:00
Roel Janssen a6ae9ffd6a
gnu: Add r-multtest. 
* gnu/packages/bioconductor.scm (r-multtest): New variable.
 2018-04-24 13:59:33 +02:00
Roel Janssen 6d94bf6baa
gnu: Add r-ripseeker. 
* gnu/packages/bioconductor.scm (r-ripseeker): New variable.
 2018-04-24 13:34:29 +02:00
Roel Janssen a5b56a5346
gnu: Add r-diffbind. 
* gnu/packages/bioconductor.scm (r-diffbind): New variable.
 2018-04-24 13:33:56 +02:00
Roel Janssen 183ce98849
gnu: Add r-regioner. 
* gnu/packages/bioconductor.scm (r-regioner): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-30 10:47:57 -04:00
Ricardo Wurmus fa5965990d
gnu: Add r-hpar. 
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-02 23:24:57 +01:00