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Author SHA1 Message Date
Meiyo Peng 2f968763c3
gnu: ibus: Indent code properly. 
* gnu/packages/ibus.scm (ibus, ibus-libpinyin): Indent code properly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-10 23:33:47 +01:00
Meiyo Peng 1a0363cf07
gnu: Add opencc. 
* gnu/packages/textutils.scm (opencc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-10 23:33:46 +01:00
Meiyo Peng 9d466489cd
gnu: Add marisa. 
* gnu/packages/datastructures.scm (marisa): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-10 23:33:46 +01:00
Ludovic Courtès 30288ae57e
gnu: mdadm: Update to 4.1. 
* gnu/packages/linux.scm (mdadm): Update to 4.1.
 2018-11-10 23:33:46 +01:00
Ricardo Wurmus 37ebc19cfb
gnu: msgpack: Remove custom bootstrap phase. 
* gnu/packages/serialization.scm (msgpack)[arguments]: Remove.
 2018-11-10 23:30:52 +01:00
Ricardo Wurmus bed4eb373e
gnu: gxtuner: Fetch sources from git. 
* gnu/packages/music.scm (gxtuner)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus a7fde1a86d
gnu: cava: Fetch sources from git. 
* gnu/packages/audio.scm (cava)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus c2a2d364df
gnu: cli-visualizer: Fetch sources from git. 
* gnu/packages/audio.scm (cli-visualizer)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus b249ff5d37
gnu: dcadec: Fetch sources from git. 
* gnu/packages/audio.scm (dcadec)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 4289a306b7
gnu: cuetools: Fetch sources from git. 
* gnu/packages/audio.scm (cuetools)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 8e5995e397
gnu: xjackfreak: Fetch sources from git. 
* gnu/packages/audio.scm (xjackfreak)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 458baefb40
gnu: rsound: Fetch sources from git. 
* gnu/packages/audio.scm (rsound)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus eca7729301
gnu: rtmidi: Fetch sources from git. 
* gnu/packages/audio.scm (rtmidi)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 0b8db03504
gnu: infamous-plugins: Fetch sources from git. 
* gnu/packages/audio.scm (infamous-plugins)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 2ae2395422
gnu: swh-plugins-lv2: Fetch sources from git. 
* gnu/packages/audio.scm (swh-plugins-lv2)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 917dc89672
gnu: csound: Fetch sources from git. 
* gnu/packages/audio.scm (csound)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus b255365cd1
gnu: lvtk: Fetch sources from git. 
* gnu/packages/audio.scm (lvtk)[source]: Fetch from git.
 2018-11-10 23:29:26 +01:00
Ricardo Wurmus 78eff85770
gnu: ams-lv2: Fetch sources from git. 
* gnu/packages/music.scm (ams-lv2)[source]: Fetch from git.
 2018-11-10 23:29:25 +01:00
Ricardo Wurmus 57906fad59
gnu: portmidi-for-extempore: Fetch sources from git. 
* gnu/packages/music.scm (portmidi-for-extempore)[source]: Fetch from git.
 2018-11-10 23:29:25 +01:00
Ricardo Wurmus ca364e7a3c
gnu: jalv-select: Fetch sources from git. 
* gnu/packages/music.scm (jalv-select)[source]: Fetch from git.
[arguments]: Add phase make-manpages-writable.
 2018-11-10 23:29:25 +01:00
Nicolas Goaziou 79b8341292
gnu: emacs-circe: Update to 2.10. 
* gnu/packages/emacs.scm (emacs-circe): Update to 2.10.
 2018-11-10 23:27:05 +01:00
Ricardo Wurmus 74c903edab
Add missing license import. 
* gnu/packages/mail.scm: Import agpl3+.
 2018-11-10 22:37:07 +01:00
Ricardo Wurmus e3a4703174
gnu: Add mumi. 
* gnu/packages/mail.scm (mumi): New variable.
 2018-11-10 22:36:13 +01:00
Ricardo Wurmus 2d900b0464
gnu: Add guile-debbugs-next. 
* gnu/packages/guile.scm (guile-debbugs-next): New variable.
 2018-11-10 22:36:13 +01:00
Ricardo Wurmus 7453785624
gnu: Add guile-email. 
* gnu/packages/guile.scm (guile-email): New variable.
 2018-11-10 22:36:13 +01:00
Ricardo Wurmus 95906eee18
gnu: guile-ics: Remove custom bootstrap phase. 
* gnu/packages/guile.scm (guile-ics)[arguments]: Remove.
 2018-11-10 22:36:13 +01:00
Efraim Flashner 1a392ee7ae
gnu: nfs-utils: Fix building with glibc@2.28. 
* gnu/packages/nfs.scm (nfs-utils)[arguments]: Add custom phase to fix
building with glibc@2.28.
 2018-11-10 22:36:33 +02:00
Efraim Flashner c1ab159085
gnu: perl-autovivification: Update to 0.18. 
* gnu/packages/perl.scm (perl-autovivification): Update to 0.18.
 2018-11-10 22:36:33 +02:00
Efraim Flashner e8b9aaf0b1
mtd-utils: Update to 2.0.2. 
* gnu/packages/linux.scm (mtd-utils): Update to 2.0.2.
[arguments]: Remove 'test-target, 'make-flags. Re-enable 'configure
phase. Add 'configure-flag for the unit-tests.
[native-inputs]: Add cmocka, pkg-config.
 2018-11-10 20:54:34 +02:00
Efraim Flashner 1de2937283
gnu: idutils: Fix building with glibc@2.28. 
* gnu/packages/idutils.scm (idutils)[source]: Add snippet to patch
bundled gnulib for glibc@2.28.
 2018-11-10 20:18:37 +02:00
Efraim Flashner 211db9caf7
gnu: sharutils: Remove false comment. 
This is a follow-up to b50d58b344.

* gnu/packages/compression.scm (sharutils)[source]: This snippet is, in
fact, a snippet.
 2018-11-10 20:18:37 +02:00
Efraim Flashner 9829e0699b
gnu: lbzip2: Remove false comment. 
This is a follow-up to f268b744b8.

* gnu/packages/compression.scm (lbzip2)[source]: This snippet is, in
fact, a snippet.
 2018-11-10 20:18:34 +02:00
Clément Lassieur a7553a7360
services: dovecot: Set correct default value for the "auth" service. 
* gnu/services/mail.scm (dovecot-configuration): Set 'service-count' to 0 for
the "auth" service.
 2018-11-10 19:12:21 +01:00
Clément Lassieur be8dd4a5fe
services: dovecot: Allow to set 'process-limit'. 
* doc/guix.texi (Mail Services): Update accordingly.
* gnu/services/mail.scm (service-configuration)[process-limit]: New field.
(dovecot-configuration)[services]: Set 'process-limit' to its correct default
value.
 2018-11-10 19:12:18 +01:00
Clément Lassieur 8d9bb4b4d0
services: dovecot: Allow to set 'client-limit'. 
* doc/guix.texi (Mail Services): Update accordingly.
* gnu/services/mail.scm (service-configuration)[client-limit]: New field.
(dovecot-configuration)[services]: Set 'client-limit' to its correct default
value.
 2018-11-10 19:12:14 +01:00
Efraim Flashner f268b744b8
gnu: lbzip2: Fix building with glibc@2.28. 
* gnu/packages/compression.scm (lbzip2)[source]: Add snippet to patch
bundled gnulib for glibc@2.28.
 2018-11-10 20:07:56 +02:00
Efraim Flashner efe0a4a2a7
gnu: dvd+rw-tools: Use invoke. 
* gnu/packages/cdrom.scm (dvd+rw-tools): Use 'invoke'.
 2018-11-10 19:59:30 +02:00
Efraim Flashner 2529c8381f
gnu: dvd+rw-tools: Fix building with glibc@2.28. 
* gnu/packages/cdrom.scm (dvd+rw-tools)[arguments]: Add custom phase to
add missing import.
 2018-11-10 19:59:27 +02:00
Efraim Flashner 8754ea483d
gnu: f2fs-tools: Update to 1.11.0. 
* gnu/packages/linux.scm (f2fs-tools): Update to 1.11.0.
 2018-11-10 19:29:17 +02:00
Efraim Flashner 005ec8d09c
gnu: f2fs-tools: Update to 1.11.0. 
* gnu/packages/linux.scm (f2fs-tools): Update to 1.11.0.
 2018-11-10 19:29:05 +02:00
Ricardo Wurmus 03a415365a
gnu: r-ensembldb: Update to 2.6.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.1.
 2018-11-09 19:41:54 +01:00
Ricardo Wurmus 88514b9124
gnu: r-biostrings: Update to 2.50.1. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.1.
 2018-11-09 19:41:53 +01:00
Ricardo Wurmus 77bea84ba1
gnu: r-biocviews: Update to 1.50.5. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.5.
 2018-11-09 19:41:53 +01:00
Ricardo Wurmus 317f5a5a91
gnu: r-sn: Update to 1.5-3. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-3.
 2018-11-09 19:41:53 +01:00
Ricardo Wurmus 5174f06b0c
gnu: r-rgooglemaps: Update to 1.4.3. 
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.3.
 2018-11-09 19:41:53 +01:00
Ricardo Wurmus 492ec49890
gnu: r-tmb: Update to 1.7.15. 
* gnu/packages/cran.scm (r-tmb): Update to 1.7.15.
 2018-11-09 19:41:53 +01:00
Ricardo Wurmus fccb24501a
gnu: r-jomo: Update to 2.6-5. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-5.
[propagated-inputs]: Add r-mass.
 2018-11-09 19:41:50 +01:00
Ricardo Wurmus f87a18e660
gnu: r-rcpp: Update to 1.0.0. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.0.
[native-inputs]: Add r-knitr.
 2018-11-09 19:01:42 +01:00
Ricardo Wurmus 06bc7b82f7
gnu: Add r-arm. 
* gnu/packages/cran.scm (r-arm): New variable.
 2018-11-09 18:04:37 +01:00
Ricardo Wurmus cf383cf08f
gnu: Add r-feature. 
* gnu/packages/cran.scm (r-feature): New variable.
 2018-11-09 18:04:37 +01:00
Ricardo Wurmus da256afb9e
gnu: Add r-ks. 
* gnu/packages/cran.scm (r-ks): New variable.
 2018-11-09 18:04:37 +01:00
Ricardo Wurmus 4106e6ad87
gnu: Add r-misc3d. 
* gnu/packages/cran.scm (r-misc3d): New variable.
 2018-11-09 18:04:36 +01:00
Ricardo Wurmus 213e72a18d
gnu: Add r-multicool. 
* gnu/packages/cran.scm (r-multicool): New variable.
 2018-11-09 18:04:36 +01:00
Ricardo Wurmus f338e4807f
gnu: Add r-rgl. 
* gnu/packages/cran.scm (r-rgl): New variable.
 2018-11-09 18:04:36 +01:00
Ricardo Wurmus a961ae469c
gnu: Add r-destiny. 
* gnu/packages/bioconductor.scm (r-destiny): New variable.
 2018-11-09 17:15:31 +01:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Ricardo Wurmus ff939ef4d5
gnu: Add r-h5. 
* gnu/packages/cran.scm (r-h5): New variable.
 2018-11-09 16:57:13 +01:00
Ricardo Wurmus 3a4c6288c8
gnu: Add r-aggregation. 
* gnu/packages/cran.scm (r-aggregation): New variable.
 2018-11-09 16:57:13 +01:00
Ricardo Wurmus 8a587c89af
gnu: Add r-savr. 
* gnu/packages/bioconductor.scm (r-savr): New variable.
 2018-11-09 16:45:21 +01:00
Ricardo Wurmus cee9ab244f
gnu: r-with-tests: Update to 3.5.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1.
 2018-11-09 14:07:26 +01:00
Ricardo Wurmus 2eaaadb4d6
gnu: r-with-tests: Use INVOKE. 
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-09 14:07:22 +01:00
Pierre Neidhardt ddd925f608
gnu: Add emacs-gtk-look. 
* gnu/packages/emacs.scm (emacs-gtk-look): New variable.
 2018-11-09 11:55:08 +01:00
Pierre Neidhardt 2cce23bfb8
gnu: Add xmlrpc-c. 
* gnu/packages/xml.scm (xmlrpc-c): New variable.
 2018-11-09 11:55:08 +01:00
Mathieu Othacehe 97f33b05ec
gnu: guile-newt: Update to revision 1. 
* gnu/packages/guile.scm (guile-newt): Update to revision 1.
 2018-11-09 19:39:14 +09:00
Ricardo Wurmus 1b12b572a5
gnu: powertabeditor: Fetch sources from git. 
* gnu/packages/music.scm (powertabeditor)[source]: Fetch from git.
 2018-11-09 08:37:53 +01:00
Ricardo Wurmus b1b82aed5d
gnu: powertabeditor: Use INVOKE. 
* gnu/packages/music.scm (powertabeditor)[arguments]: Use INVOKE and return #T
unconditionally.
 2018-11-09 08:37:53 +01:00
Kei Kebreau e4b62e229e
gnu: wxmaxima: Update to 18.10.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-11-09 01:09:06 -05:00
Leo Famulari 41d2b7f50b
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
 2018-11-08 13:42:56 -05:00
Pierre Neidhardt 2705780f3f
gnu: Add emacs-clang-format. 
* gnu/packages/emacs.scm (emacs-clang-format): New variable.
 2018-11-08 13:08:26 +01:00
Efraim Flashner e3407254d5
gnu: kodi: Update to 18.0b5. 
* gnu/packages/kodi.scm (kodi): Update to 18.0b5.
[source]: Update snippet.
[inputs]: Add flatbuffers, fstrcmp.
(crossguid): Update to commit fef89a4174a7bf8cd99fa9154864ce9e8e3bf989.
(libdvdnav/kodi, libdvdread/kodi): Update to 6.0.0-Leia-Alpha-3.
(libdvdcss/kodi): Update to 1.4.2-Leia-Beta-5.
 2018-11-08 12:01:24 +02:00
Efraim Flashner 988b78ba28
gnu: Add fstrcmp. 
* gnu/packages/kodi.scm (fstrcmp): New variable.
 2018-11-08 12:01:20 +02:00
Stefan Stefanović ec86863113
services: elogind: Fix spelling errors of left value fields in elogind config file. 
* gnu/services/desktop.scm (elogind-configuration-file)[ini-file]:
    Fix spelling of left value fields:
    InhibitDelayMaxSecs, HoldoffTimeoutSecs, IdleActionSeconds, RemoveIpc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-08 10:24:35 +01:00
Luther Thompson 9870b9f7f8
gnu: python-ilinkedlist: Update to 0.3.1. 
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-08 10:24:26 +01:00
Vagrant Cascadian 195e081b43
gnu: Add python-pyelftools. 
* gnu/packages/python.scm (python-pyelftools):
  New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-08 10:24:22 +01:00
Ricardo Wurmus 69cb939ee7
gnu: libmusicbrainz: Use INVOKE. 
* gnu/packages/music.scm (libmusicbrainz)[arguments]: Use INVOKE and return #T
unconditionally.
 2018-11-08 10:17:15 +01:00
Ricardo Wurmus 9ab90ead36
gnu: pd: Remove custom autoconf phase. 
* gnu/packages/music.scm (pd)[arguments]: Remove custom autoconf phase.
 2018-11-08 10:14:08 +01:00
Ricardo Wurmus 4e82946888
gnu: cmus: Fetch sources from git. 
* gnu/packages/music.scm (cmus)[source]: Fetch from git.
 2018-11-08 10:10:06 +01:00
Ricardo Wurmus ec618c2005
gnu: cmus: Use INVOKE. 
* gnu/packages/music.scm (cmus)[arguments]: Use INVOKE and return #T
unconditionally.
 2018-11-08 10:09:32 +01:00
Ricardo Wurmus 9c30cba431
gnu: pcc: Use INVOKE. 
* gnu/packages/c.scm (pcc)[arguments]: Use INVOKE and return #T
unconditionally.
 2018-11-08 10:08:09 +01:00
Ricardo Wurmus a1e83a9856
gnu: pplacer-scripts: Use INVOKE. 
* gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-08 10:06:35 +01:00
Ricardo Wurmus ce49fdcce9
gnu: roary: Use INVOKE. 
* gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T
unconditionally.
 2018-11-08 09:58:05 +01:00
Ricardo Wurmus a9542937c8
gnu: seek: Use INVOKE. 
* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T
unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
 2018-11-08 09:54:22 +01:00
Ricardo Wurmus 9f527c9199
gnu: sailfish: Use INVOKE. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of
SYSTEM*.
 2018-11-08 09:52:46 +01:00
Ricardo Wurmus 86c6928ea3
gnu: vsearch: Update to 2.9.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
 2018-11-08 09:46:42 +01:00
Ricardo Wurmus 15c9609482
gnu: sra-tools: Update to 2.9.3. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3.
[arguments]: Remove build phase patch-away-glibc-conflict.
 2018-11-08 09:46:05 +01:00
Ricardo Wurmus b17333414f
gnu: plink-ng: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git.
 2018-11-08 09:30:59 +01:00
Ricardo Wurmus 87408854ec
gnu: ncbi-vdb: Update to 2.9.3. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3.
 2018-11-08 09:30:16 +01:00
Ricardo Wurmus 8d3eaa9262
gnu: ngs-sdk: Update to 2.9.3. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.3.
 2018-11-08 09:29:58 +01:00
Ricardo Wurmus 3da3cedf76
gnu: ngs-sdk: Use INVOKE. 
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-08 09:15:05 +01:00
Ricardo Wurmus e78e54d029
gnu: emboss: Use INVOKE. 
* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-08 09:14:09 +01:00
Ricardo Wurmus 8b685c4720
gnu: taxtastic: Use INVOKE. 
* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-08 09:13:35 +01:00
Ricardo Wurmus 2e2d88539c
gnu: sra-tools: Use INVOKE. 
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-08 09:12:43 +01:00
Ricardo Wurmus 179416467f
gnu: muscle: Use INVOKE. 
* gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-11-08 09:11:38 +01:00
Ricardo Wurmus 0881d62f25
gnu: newick-utils: Remove custom autoconf phase. 
* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
 2018-11-08 09:10:58 +01:00
Ricardo Wurmus e35dce0170
gnu: mash: Remove custom autoconf phase. 
* gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
 2018-11-08 09:10:20 +01:00
Ricardo Wurmus 31c41a8cfe
gnu: vsearch: Remove custom autogen phase. 
* gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
 2018-11-08 09:04:34 +01:00
Ricardo Wurmus c527d36f02
gnu: java-picard-1.113: Use INVOKE. 
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE
and return #T unconditionally.
 2018-11-08 09:02:34 +01:00
Ricardo Wurmus e438c96558
gnu: fraggenescan: Use INVOKE. 
* gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in
build phases and return #T unconditionally.
 2018-11-08 08:58:46 +01:00
Ricardo Wurmus c098c49b3e
gnu: sailfish: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
 2018-11-08 08:53:54 +01:00
Ricardo Wurmus 4031e7f1ec
gnu: ngs-sdk: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
 2018-11-08 08:53:53 +01:00
Ricardo Wurmus 6a7d9ee39f
gnu: ncbi-vdb: Use INVOKE and end phases on #T. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and
unconditionally end phases with #T.
 2018-11-08 08:53:53 +01:00
Ricardo Wurmus 3398dfb764
gnu: ncbi-vdb: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
 2018-11-08 08:53:53 +01:00
Ricardo Wurmus e0f1aa2d2b
gnu: tadbit: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git.
[version]: Use "2.0.0" instead of "2.0".
 2018-11-08 08:53:50 +01:00
Kei Kebreau ed33049cdc
gnu: pspp: Update to 1.2.0. 
* gnu/packages/statistics.scm (pspp): Update to 1.2.0.
[inputs]: Add spread-sheet-widget.
[native-inputs]: Add autoconf, python-2, and texinfo.
 2018-11-07 17:46:25 -05:00
Kei Kebreau e2f36385d3
gnu: Add spread-sheet-widget. 
* gnu/packages/gtk.scm (spread-sheet-widget): New public variable.
 2018-11-07 17:46:25 -05:00
Ricardo Wurmus f3f34b132c
gnu: filevercmp: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git.
[arguments]: Add #T to the end of the install phase.
 2018-11-07 23:17:36 +01:00
Ricardo Wurmus 3b888065da
gnu: ritornello: Update to 2.0.1. 
* gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1.
[arguments]: Adjust file patching.
 2018-11-07 23:17:36 +01:00
Ricardo Wurmus 7145f4e519
gnu: ritornello: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (ritornello)[source]: Fetch from git.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus e0a8fc85dd
gnu: snap-aligner: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus 6236524409
gnu: sortmerna: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (sortmerna)[source]: Fetch from git.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus 273df99d7d
gnu: vsearch: Fetch source from git. 
* gnu/packages/bioinformatics.scm (vsearch)[source]: Fetch from git.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus 67caa4b773
gnu: preseq: Update to 2.0.3. 
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.3.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus 37e285be43
gnu: preseq: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (preseq)[source]: Fetch from git.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus 63f3255e13
gnu: seqtk: Update to 1.3. 
* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
[source]: Remove outdated snippet.
[arguments]: Use INVOKE and return #T unconditionally.
 2018-11-07 23:17:35 +01:00
Ricardo Wurmus 019fcdf20a
gnu: seqtk: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (seqtk)[source]: Fetch from git.
 2018-11-07 23:17:34 +01:00
Ricardo Wurmus b9d0c3564b
gnu: raxml: Update to 8.2.12. 
* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.12.
 2018-11-07 23:17:34 +01:00
Ricardo Wurmus d9ba126d17
gnu: python2-biom-format: Fix build. 
This is a follow-up to commit 239716fb0b.

* gnu/packages/bioinformatics.scm (python2-biom-format)[arguments]: Modify
phases of base package.
 2018-11-07 23:17:34 +01:00
Ricardo Wurmus 4715d4af17
gnu: raxml: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (raxml)[source]: Fetch from git.
 2018-11-07 23:17:34 +01:00
Ricardo Wurmus 5e242b02c3
gnu: pyicoteo: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (pyicoteo)[source]: Fetch from git.
 2018-11-07 23:17:34 +01:00
Efraim Flashner b44b1f08f6
gnu: hplip: Remove bundled non-free blobs. 
This fixes <https://bugs.gnu.org/32184>.

* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-11-07 23:16:02 +02:00
Ricardo Wurmus 2b773a9273
gnu: sra-tools: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (sra-tools)[source]: Fetch from git.
 2018-11-07 21:41:56 +01:00
Ricardo Wurmus 55698df260
gnu: libgff: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (libgff)[source]: Fetch from git.
 2018-11-07 21:41:56 +01:00
Ricardo Wurmus 4257c10ad2
gnu: kentutils: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus 1a20bcadf3
gnu: r-seqgl: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (r-seqgl)[source]: Fetch from git.
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus a2b9d6a8d0
gnu: pplacer: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git.
[arguments]: Make files writable; use INVOKE.
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus 6052264b56
gnu: minced: Update to 0.3.2. 
* gnu/packages/bioinformatics.scm (minced): Update to 0.3.2.
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus 9d94ca0ebf
gnu: minced: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (minced)[source]: Fetch from git.
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus b58d9e4aa2
gnu: metabat: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (metabat)[source]: Fetch from git.
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus 5c1f35e71b
gnu: mash: Update to 2.1. 
* gnu/packages/bioinformatics.scm (mash): Update to 2.1.
 2018-11-07 21:41:55 +01:00
Ricardo Wurmus 497fc04d8f
gnu: mash: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (mash)[source]: Fetch from git.
 2018-11-07 21:41:55 +01:00
Marius Bakke 55174e668f
Merge branch 'master' into core-updates 2018-11-07 21:09:57 +01:00
Marius Bakke b31e156161
gnu: fio: Update to 3.11. 
* gnu/packages/benchmark.scm (fio): Update to 3.11.
[source]: Use bz2 compressed tarball.
 2018-11-07 21:09:00 +01:00
Marius Bakke 1badc85068
gnu: ceph: Update to 13.2.2. 
* gnu/packages/patches/ceph-skip-unittest_blockdev.patch: Adjust for 13.2.2.
* gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file.
* gnu/packages/patches/ceph-detect-rocksdb.patch,
gnu/packages/patches/ceph-volume-respect-PATH.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 13.2.2.
[source]: Don't remove src/dpdk, which has been moved to src/spdk/dpdk and
is purged elsewhere.  Drop bundled rapidjson.  Adjust patch list.
[arguments]: Add "-DWITH_MGR_DASHBOARD_FRONTEND=OFF" and "-DWITH_SPDK=OFF" to
 #:configure-flags.   Drop obsolete "-DWITH_EMBEDDED".  Add workaround for
<https://bugs.gnu.org/30756>.  Remove obsolete test substitution.  Rework
'wrap-python-script' to be less verbose and wrap more scripts.
[native-inputs]: Add GCC-7.
[inputs]: Add OATH-TOOLKIT, RAPIDJSON and PYTHON2-SIX.
 2018-11-07 21:01:12 +01:00
Ricardo Wurmus 2dc28391f3
gnu: kaiju: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.3.
 2018-11-07 20:47:22 +01:00
Ricardo Wurmus 6fe323bf2e
gnu: kaiju: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (kaiju)[source]: Fetch from git.
[arguments]: Remove redundant installation step.
 2018-11-07 20:46:36 +01:00
Ricardo Wurmus f0731591a5
gnu: idr: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (idr)[source]: Fetch from git.
 2018-11-07 20:41:58 +01:00
Ricardo Wurmus b8a6230df3
gnu: java-htsjdk: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (java-htsjdk)[source]: Fetch from git.
 2018-11-07 20:36:07 +01:00
Ricardo Wurmus 57be690d91
gnu: hisat2: Use versioned source URL. 
* gnu/packages/bioinformatics.scm (hisat2)[source]: Use versioned URL.
 2018-11-07 20:32:29 +01:00
Ricardo Wurmus c8f02c1dcb
gnu: grit: Update to 2.0.5. 
* gnu/packages/bioinformatics.scm (grit): Update to 2.0.5.
[arguments]: Simplify.
 2018-11-07 20:30:44 +01:00
Ricardo Wurmus 8d75adbf03
gnu: grit: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (grit)[source]: Fetch from git.
 2018-11-07 20:27:10 +01:00
Ricardo Wurmus 152bebd9e0
gnu: gemma: Update to 0.98. 
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gemma-intel-compat.patch: Remove file.
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.
[source]: Remove patch.
[inputs]: Add eigen, gfortran:lib, and openblas.
[arguments]: Add phase "find-eigen".
 2018-11-07 20:26:46 +01:00
Ricardo Wurmus b113f39019
gnu: gemma: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (gemma)[source]: Fetch from git.
 2018-11-07 20:26:45 +01:00
Pierre Langlois f09e8abc5e
gnu: clementine: Build with sqlite-with-column-metadata. 
* gnu/packages/music.scm (clementine)[inputs]: Use sqlite-with-column-metadata.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-11-07 14:25:07 -05:00
Ricardo Wurmus 91b71cfbba
gnu: fxtract: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (fxtract)[source]: Fetch from git.
 2018-11-07 19:55:50 +01:00
Ricardo Wurmus 7ca49ab57a
gnu: ribodiff: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (ribodiff)[source]: Fetch from git.
 2018-11-07 19:48:21 +01:00
Ricardo Wurmus 239716fb0b
gnu: python-biom-format: Update to 2.1.7. 
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.7.
[arguments]: Add phases "use-cython", "disable-broken-test", and
"make-files-writable".
[propagated-inputs]: Add python-flake8.
[native-inputs]: Add python-cython, python-pytest, and python-pytest-cov.
 2018-11-07 19:47:07 +01:00
Ricardo Wurmus 007a81d5cf
gnu: python-biom-format: Fetch source from git. 
* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Fetch from
git.
 2018-11-07 19:10:36 +01:00
Ricardo Wurmus 383cb7b8e6
gnu: bioawk: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (bioawk)[source]: Fetch from git.
 2018-11-07 19:06:30 +01:00
Ricardo Wurmus 20ee3e8b76
gnu: bedtools-2.18: Fetch sources from stable URL. 
* gnu/packages/bioinformatics.scm (bedtools-2.18)[source]: Use stable release
tarball instead of generated tag tarball.
 2018-11-07 18:52:46 +01:00
Ricardo Wurmus 8e58319c45
gnu: bamtools: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (bamtools)[source]: Fetch from git.
 2018-11-07 18:44:30 +01:00
Ricardo Wurmus 21335fdbec
gnu: ngless: Install links to required tools. 
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Install links to tools.
[inputs]: Add prodigal, bwa, samtools, and minimap2.
 2018-11-07 17:19:53 +01:00
Ricardo Wurmus fff67cc8a7
gnu: prodigal: Fetch sources from git. 
* gnu/packages/bioinformatics.scm (prodigal)[source]: Fetch from git.
 2018-11-07 17:19:53 +01:00
Marius Bakke e2568df74e
gnu: rocksdb: Update to 5.15.10. 
* gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
 2018-11-07 16:06:56 +01:00
Marius Bakke 8dd3665883
gnu: rocksdb: Don't use unstable tarball. 
* gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
 2018-11-07 16:06:56 +01:00
Ludovic Courtès dcb45127e0
services: cuirass: Add 'ttl' configuration field. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[ttl]: New field.
(cuirass-shepherd-service): Honor it.
 2018-11-07 16:06:42 +01:00
Ludovic Courtès 08759829cf
gnu: cuirass: Update to 0b40dca. 
* gnu/packages/ci.scm (cuirass): Update to 0b40dca.
 2018-11-07 16:06:42 +01:00
Ludovic Courtès 970c9993f1
linux-initrd: Make sure 'build-initrd' can delete files. 
Fixes <https://bugs.gnu.org/33297>.
Reported by Mark H Weaver <mhw@netris.org>.

This fixes a regression introduced in
72dc64f8f7, which made files read-only.

* gnu/build/linux-initrd.scm (build-initrd): Call 'make-file-writable'
on all the files under contents/.
 2018-11-07 16:06:42 +01:00
Ricardo Wurmus 9255198423
gnu: r-mzr: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.0.
[inputs]: Remove netcdf.
[propagated-inputs]: Add r-ncdf4.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 37200dbcc3
gnu: r-rhdf5lib: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0.
[source]: Add snippet to remove bundled binaries.
[arguments]: Replace references to hdf5 with references to hdf5-1.10.
[native-inputs]: Likewise.
[propagated-inputs]: Replace hdf5 with hdf5-1.10.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 8e48d36f26
gnu: r-hdf5array: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 611a255d2b
gnu: r-rhdf5: Update to 2.26.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus a1c2bf8e54
gnu: r-rcas: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.8.0.
[native-inputs]: Remove r-testthat and ghc-pandoc-citeproc.
[propagated-inputs]: Add r-annotationdbi, r-genomeinfodb, and r-genomicranges;
remove r-bsgenome-mmusculus-ucsc-mm9, r-bsgenome-celegans-ucsc-ce10,
r-bsgenome-dmelanogaster-ucsc-dm3, r-org-ce-eg-db, r-org-dm-eg-db, and
r-org-mm-eg-db.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 900ce2bafd
gnu: r-delayedmatrixstats: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.4.0.
[propagated-inputs]: Add r-biocparallel and r-hdf5array.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 70a3a76ba7
gnu: r-scran: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.1.
[propagated-inputs]: Add r-biocneighbors; remove r-dt, r-fnn, r-ggplot2,
r-shiny, and r-viridis.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 48f2791496
gnu: r-scater: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
[propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and r-tximport.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus f93ec63ccf
gnu: r-singlecellexperiment: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 3c833608f3
gnu: r-beachmat: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.4.0.
[propagated-inputs]: Add r-biocgenerics.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus edb91244c3
gnu: r-qvalue: Update to 2.14.0. 
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus d055f199a9
gnu: r-hitc: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.26.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 8023912934
gnu: r-fithic: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.8.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 7468a76480
gnu: r-sushi: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.20.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 85b16c05e8
gnu: r-gwascat: Update to 2.14.0. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.14.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus d57445c9b2
gnu: r-gviz: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus ea55326dc7
gnu: r-gqtlstats: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.14.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus da679b5202
gnu: r-ldblock: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.12.0.
 2018-11-07 12:27:16 +01:00
Ricardo Wurmus 4b91335566
gnu: r-erma: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.14.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 220ac15e3f
gnu: r-snpstats: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.32.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 181a843143
gnu: r-gqtlbase: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.14.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus f20c766413
gnu: r-ggbio: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.30.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus e7a0bc1ccf
gnu: r-biovizbase: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus cdab2dcfea
gnu: r-organismdbi: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.24.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus e8e78c4966
gnu: r-ensembldb: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 0c96e4b290
gnu: r-dirichletmultinomial: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 5ae5a8ebfc
gnu: r-complexheatmap: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.20.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus d78c6aca55
gnu: r-genomicfiles: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.18.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 122e099e72
gnu: r-gage: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 4984212786
gnu: r-keggrest: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.22.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 95df764c01
gnu: r-fastseg: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.28.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 147633d4c1
gnu: r-annotationhub: Update to 2.14.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.1.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus d7ea34bf99
gnu: r-interactivedisplaybase: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.20.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus b03951f26b
gnu: r-edaseq: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 7812e6b82e
gnu: r-deseq: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 800954eba4
gnu: r-aroma-light: Update to 3.12.0. 
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.12.0.
 2018-11-07 12:27:15 +01:00
Ricardo Wurmus 675d91a035
gnu: r-msnid: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 762aca7270
gnu: r-msnbase: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 73d7475246
gnu: r-pcamethods: Update to 1.74.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.74.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2c4311dc7c
gnu: r-mzid: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 0e16fc4699
gnu: r-vsn: Update to 3.50.0. 
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.50.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2b085484c0
gnu: r-affy: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.60.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 511abd7add
gnu: r-affyio: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.52.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 691ce09fd3
gnu: r-protgenerics: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.14.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 8af8688339
gnu: r-sva: Update to 3.30.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 18604a76e4
gnu: r-methylkit: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 739a856db8
gnu: r-copywriter: Update to 2.14.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2e9d8116fb
gnu: r-chipseq: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.32.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus cec8f0920b
gnu: r-annotationfilter: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.6.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus d2b60be596
gnu: r-tximport: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus ad90921ddc
gnu: r-mutationalpatterns: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.8.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 338f860cc6
gnu: r-bamsignals: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.14.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 48196899cd
gnu: r-rhtslib: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 7d7c702c03
gnu: r-zlibbioc: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.28.0.
 2018-11-07 12:27:14 +01:00
Ricardo Wurmus 2919fefe12
gnu: r-motifrg: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.26.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 34f1c60c78
gnu: r-seqlogo: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.48.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus c5b0815c44
gnu: r-genomation: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.14.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 45ba2caedb
gnu: r-seqpattern: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.14.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus d11bc259a8
gnu: r-impute: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.56.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 78ecdbc00a
gnu: r-bsgenome: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.50.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 44fa14dfa3
gnu: r-topgo: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.34.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 8a0d57d26e
gnu: r-genomicfeatures: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.1.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus c5f1d1ce80
gnu: r-rtracklayer: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 52b95337e8
gnu: r-genomicalignments: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 9fd4350e5a
gnu: r-summarizedexperiment: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.12.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus de4c38f80b
gnu: r-delayedarray: Update to 0.8.0. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.8.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 7f3778eb06
gnu: r-rsamtools: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 4804c59227
gnu: r-biostrings: Update to 2.50.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus cd8828918f
gnu: r-biocparallel: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 3359d44210
gnu: r-biomart: Update to 2.38.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.38.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 3986e0dee5
gnu: r-annotationdbi: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.44.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 5b82e12a99
gnu: r-biobase: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.42.0.
 2018-11-07 12:27:13 +01:00
Ricardo Wurmus 8d3906a95f
gnu: r-genomicranges: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.34.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus fb10fb72ba
gnu: r-xvector: Update to 0.22.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.22.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 78d2ffdc73
gnu: r-limma: Update to 3.38.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.2.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus ca2945c316
gnu: r-variantannotation: Update to 1.28.1. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 08cd2d5b59
gnu: r-edger: Update to 3.24.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 12871693fe
gnu: r-genomeinfodb: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 9a8dd51979
gnu: r-iranges: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus a037453554
gnu: r-s4vectors: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 70f2758f71
gnu: r-dnacopy: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.56.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus a127d3522a
gnu: r-bioccheck: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.18.0.
[propagated-inputs]: Add r-knitr and r-biocmanager; remove r-biocinstaller.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 6087f5ce37
gnu: r-biocstyle: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.10.0.
[propagated-inputs]: Add biocmanager.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus c8dbb5fa7f
gnu: r-biocviews: Update to 1.50.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 36d7d823a4
gnu: r-biocinstaller: Update to 1.32.1. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.32.1.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 2f28ffd81d
gnu: r-biocgenerics: Update to 0.28.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.28.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 5c996cab4c
gnu: r-grohmm: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus bf25930cf6
gnu: r-systempiper: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 9adf78c21e
gnu: r-shortread: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.40.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 4a4b5b8537
gnu: r-gostats: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.48.0.
 2018-11-07 12:27:12 +01:00
Ricardo Wurmus 95ae5acc89
gnu: r-category: Update to 2.48.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 6dfb0b25ae
gnu: r-gseabase: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.44.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 19a6149190
gnu: r-rbgl: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 2ff6604a53
gnu: r-annotationforge: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.24.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 856444a0a1
gnu: r-dexseq: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus b5c552e654
gnu: r-deseq2: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 85fb33a051
gnu: r-genefilter: Update to 1.64.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.64.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus f4a95a0d15
gnu: r-geneplotter: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.60.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus dadd682c53
gnu: r-copynumber: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.22.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 090d4c0159
gnu: r-annotate: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.60.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 00281ea3cd
gnu: r-modelmetrics: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.2.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 9bd78484a2
gnu: r-preprocesscore: Update to 1.44.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.44.0.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 1b3552310d
gnu: r-tidyr: Update to 0.8.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.2.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 466397c35b
gnu: r-dt: Update to 0.5. 
* gnu/packages/statistics.scm (r-dt): Update to 0.5.
[propagated-inputs]: Add r-promises.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 9094eb892c
gnu: r-roxygen2: Update to 6.1.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 0de3ebb099
gnu: r-survival: Update to 2.43-1. 
* gnu/packages/statistics.scm (r-survival): Update to 2.43-1.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 83ca17d8e8
gnu: r-matrix: Update to 1.2-15. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-15.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 1966d8ffc7
gnu: r-lattice: Update to 0.20-38. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-38.
 2018-11-07 12:26:34 +01:00
Ricardo Wurmus 600a25eb04
gnu: r-mass: Update to 7.3-51.1. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus a44f8b00fe
gnu: r-pander: Update to 0.6.3. 
* gnu/packages/cran.scm (r-pander): Update to 0.6.3.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 7466c3bb06
gnu: r-rcmdcheck: Update to 1.3.1. 
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1.
[propagated-inputs]: Add r-sessioninfo.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus fc532b452f
gnu: r-remotes: Update to 2.0.2. 
* gnu/packages/cran.scm (r-remotes): Update to 2.0.2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 3d6fa1a3ad
gnu: r-sessioninfo: Update to 1.1.1. 
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 244a5c43ec
gnu: r-flextable: Update to 0.4.6. 
* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 84d0d860e1
gnu: r-sjmisc: Update to 2.7.6. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6.
[propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus cea8a60747
gnu: r-xts: Update to 0.11-2. 
* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 5d986a3b41
gnu: r-psych: Update to 1.8.10. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 56af171ffd
gnu: r-ipred: Update to 0.9-8. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus ec0ee08576
gnu: r-ffbase: Update to 0.12.7. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 65dd0e6748
gnu: r-pkgload: Update to 1.0.2. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 0dd84df121
gnu: r-ps: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 269182b0f1
gnu: r-rgraphviz: Update to 2.26.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus bb47aca5e7
gnu: Add hdf5-1.10. 
* gnu/packages/maths.scm (hdf5-1.10): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus d639d8884c
gnu: r-regioner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus ed35d7ca1f
gnu: r-ruvseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 286157dc49
gnu: Add r-biocneighbors. 
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus 318bcbc451
gnu: r-dnabarcodes: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6f1e1d0f88
gnu: r-inspect: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus c348cfed74
gnu: r-rots: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 016afac30f
gnu: r-glimma: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 6ea9ae9c39
gnu: r-goseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus b858338c76
gnu: r-ctc: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 5f2d0e635e
gnu: r-genomicinteractions: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus bbc4787cf2
gnu: r-interactionset: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus c4fed658a9
gnu: r-riboseqr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus e22e462b33
gnu: r-riboprofiling: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus e9427b2c78
gnu: r-ripseeker: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus aa802eafb6
gnu: r-chipcomp: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 4728e27511
gnu: r-bayseq: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 57d2fcd9ee
gnu: r-chippeakanno: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 14520b640e
gnu: r-graph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 95ee4a466b
gnu: r-multtest: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus a92f523026
gnu: r-qdnaseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 9add0933d0
gnu: r-cghcall: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 46cdceef4c
gnu: r-cghbase: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus f1c606ce8c
gnu: r-marray: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
 2018-11-07 12:26:32 +01:00
Ricardo Wurmus 98652568a4
gnu: r-diffbind: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus 6168692159
gnu: r-hpar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus 1e605c030f
gnu: Add r-biocmanager. 
* gnu/packages/cran.scm (r-biocmanager): New variable.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus b58940cb03
gnu: Add r-ncdf4. 
* gnu/packages/cran.scm (r-ncdf4): New variable.
 2018-11-07 12:26:31 +01:00
Ricardo Wurmus bfa5662e38
gnu: Add r-rcppannoy. 
* gnu/packages/cran.scm (r-rcppannoy): New variable.
 2018-11-07 12:26:31 +01:00
Mathieu Othacehe 8243f4e55a
gnu: slang: Use a correct location for terminfo dirs. 
As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.

* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
 2018-11-07 18:39:19 +09:00
Mathieu Othacehe a7903ca150
gnu: terminals: Change libtsm and kmscon repositories. 
Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.

* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and
switch to git-fetch method.
 2018-11-07 18:27:01 +09:00
Mathieu Othacehe 2d9dace8c2
services: kmscon: Add an auto-login option. 
Add an auto-login option that behaves as the one of mingetty-service.

* gnu/services/base.scm (kmscon-configuration)[auto-login]: New field.
(kmscon-service-type): Pass it to kmscon command.
* doc/guix.texi (Base Services): Document it.
 2018-11-07 18:21:42 +09:00
Mathieu Othacehe f4e8bc5f25
services: kmscon: Do not switch to vt at start. 
* gnu/services/base.scm (kmscon-service-type): Add "--no-switchvt" to kmscon
command.
 2018-11-07 18:15:00 +09:00
Mathieu Othacehe 581720bc74
gnu: Add guile-newt. 
* gnu/packages/guile.scm (guile-newt): New variable.
 2018-11-07 18:09:30 +09:00
Efraim Flashner cbb5d2e145
gnu: kodi: Fix typo. 
This is a follow-up to 2c17bd7b29.

* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
 2018-11-07 10:38:13 +02:00
Leo Famulari 02e2133bd2
gnu: LibreOffice: Update to 6.1.3.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
 2018-11-06 23:13:50 -05:00
Leo Famulari b20aef98a0
gnu: GnuPG: Update to 2.2.11. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
 2018-11-06 17:26:45 -05:00
Ludovic Courtès c5ce2db569
install: Add 'install-database-and-gc-roots'. 
* gnu/build/install.scm (%root-profile): New variable.
(install-database-and-gc-roots): New procedure.
(populate-single-profile-directory): Replace inline code with a call to
'install-database-and-gc-roots'.
 2018-11-06 23:21:24 +01:00
Ludovic Courtès b27ef1d46c
pack: Import (guix store database) only when '--localstatedir' is passed. 
This is another way to address <https://bugs.gnu.org/32184>, which was
previously addressed in commit 19c924af4f.

* gnu/build/install.scm (register-closure): Move to...
* gnu/build/vm.scm (register-closure): ... here.  New procedure.
* guix/scripts/pack.scm (self-contained-tarball)[build]: Remove
now unneeded 'with-extensions' form and custom (guix config) module.
* tests/guix-pack.sh: Revert the strategy from
commit 19c924af4f.
* tests/pack.scm ("self-contained-tarball"): Likewise.
 2018-11-06 23:21:23 +01:00
Ludovic Courtès ec4c81fe32
pack: Move store database creation to a separate derivation. 
* guix/scripts/pack.scm (store-database): New procedure.
(self-contained-tarball): Use it when LOCALSTATEDIR? is true.
Remove 'schema' and add 'database'.
[build]: Pass DATABASE to 'populate-single-profile-directory'.
(squashfs-image): Remove #:deduplicate? parameter.
[build]: Remove (gnu build install) and (guix config) from the imported
modules.  Remove 'with-extensions'.
* gnu/build/install.scm (populate-single-profile-directory): Remove
 #:deduplicate?, #:register?, and #:schema; add #:database.  Remove call
to 'register-closure' and simply copy DATABASE instead.
 2018-11-06 23:21:23 +01:00
Marius Bakke c6b05bacc0
gnu: nginx: Update to 1.14.1 [security fixes]. 
This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845.

* gnu/packages/web.scm (nginx): Update to 1.14.1.
 2018-11-06 21:34:30 +01:00
Leo Famulari f25614229b
gnu: Syncthing: Update to 0.14.52. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52.
 2018-11-06 11:16:22 -05:00
Ludovic Courtès 4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms. 
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-06 17:08:46 +01:00
Stefan Stefanović 158c02dffa
gnu: Add xcb-util-errors. 
* gnu/packages/xorg.scm (xcb-util-errors): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-06 17:00:02 +01:00
Ludovic Courtès 3527f600b5
gnu: guile-sqlite3: Update home page. 
* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update.
 2018-11-06 17:00:01 +01:00
lakshmi cddc0300b7
gnu: Add r-weights. 
* gnu/packages/cran.scm (r-weights): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-11-06 16:06:42 +01:00
Tobias Geerinckx-Rice fe4fb278b8
gnu: youtube-dl: Update to 2018.11.03. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03.
 2018-11-06 15:34:37 +01:00
Tobias Geerinckx-Rice b1eeeb8dd4
gnu: terraform-docs: Update to 0.5.0. 
* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0.
[native-inputs]: Remove them all.
 2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice c3b8300af3
gnu: jq: Don't use NAME in source URI. 
* gnu/packages/web.scm (jq)[source]: Code more hard.
 2018-11-06 15:34:36 +01:00
Tobias Geerinckx-Rice 418dd6adb5
gnu: jq: Update to 1.6. 
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-11-06 15:34:36 +01:00
Rutger Helling c58f3ebaf8
gnu: ffmpeg: Update to 4.1. 
* gnu/packages/video.scm (ffmpeg): Update to 4.1.
 2018-11-06 12:02:59 +01:00
Efraim Flashner 730e5fbc66
Revert "gnu: c-ares: Update to 1.15.0." 
c-ares has more than 3000 dependant packages.

This reverts commit b588adc96f.
 2018-11-06 12:22:02 +02:00
Efraim Flashner b588adc96f
gnu: c-ares: Update to 1.15.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.15.0.
 2018-11-06 08:32:56 +02:00
Oleg Pykhalov 7f860a8be1
gnu: services: dns: Fix 'ddclient-activation'. 
* gnu/services/dns.scm (ddclient-activation): Fix procedure.
 2018-11-06 07:16:44 +03:00
Marius Bakke 3bd83e6db2
gnu: qtbase: Remove obsolete patch. 
This patch is no longer needed since 7930cfc989
was merged to core-updates.

* gnu/packages/patches/qtbase-glibc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/qt.scm (qtbase)[source](patches): Drop it.
 2018-11-06 00:04:31 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Marius Bakke adde15186d
gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
 2018-11-05 23:53:30 +01:00
Marius Bakke 208e82297c
gnu: xapian: Update to 1.4.9. 
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
 2018-11-05 23:46:38 +01:00
Marius Bakke d79c8148cc
gnu: libssh: Update to 0.7.7. 
* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
 2018-11-05 23:46:38 +01:00
Marius Bakke b5a887637c
gnu: strace: Update to 4.25. 
* gnu/packages/linux.scm (strace): Update to 4.25.
 2018-11-05 23:46:38 +01:00
Marius Bakke 876428dd98
gnu: libmtp: Update to 1.1.16. 
* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
 2018-11-05 23:46:38 +01:00
Marius Bakke 039241bc96
gnu: libgit2: Update to 0.26.8. 
* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
 2018-11-05 23:46:38 +01:00
Marius Bakke c98a7e6b91
gnu: i3-wm: Update to 4.16. 
* gnu/packages/wm.scm (i3-wm): Update to 4.16.
 2018-11-05 23:46:38 +01:00
Marius Bakke 9c415f96ec
gnu: libgphoto2: Update to 2.5.20. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
 2018-11-05 23:46:38 +01:00
Marius Bakke 66044a3698
gnu: glm: Update to 0.9.9.3. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
 2018-11-05 23:46:38 +01:00
Marius Bakke 64b60f38e7
gnu: ffmpeg: Update to 4.0.3. 
* gnu/packages/video.scm (ffmpeg): Update to 4.0.3.
 2018-11-05 23:46:38 +01:00
Marius Bakke c5e5711002
gnu: ffmpeg@3.4: Update to 3.4.5. 
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5.
 2018-11-05 23:46:37 +01:00
Marius Bakke 196653145a
gnu: feh: Update to 2.28.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.28.1.
 2018-11-05 23:46:37 +01:00
Marius Bakke 00815eea38
gnu: libsoup: Update to 2.64.2. 
* gnu/packages/gnome.scm (libsoup): Update to 2.64.2.
 2018-11-05 23:46:37 +01:00
Marius Bakke 0a56ffdf1f
gnu: mono: Update home page. 
* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS.
 2018-11-05 23:46:37 +01:00
Leo Famulari 288d24800d
gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}]. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6.
 2018-11-05 16:22:11 -05:00
Pierre Neidhardt 426ffb830a
gnu: emacs-mu4e-conversation: Update to 20181105. 
* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181105.
 2018-11-05 20:22:06 +01:00
Pierre Neidhardt 695db2f98a
gnu: Add emacs-helm-slime. 
* gnu/packages/emacs.scm (emacs-helm-slime): New variable.
 2018-11-05 13:58:33 +01:00
Mark H Weaver c9f3d38be4
gnu: linux-libre: Update to 4.19.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.1.
(%linux-libre-hash): Update hash.
 2018-11-05 04:00:45 -05:00
Mark H Weaver 28c717213d
gnu: linux-libre@4.14: Update to 4.14.79. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.79.
(%linux-libre-4.14-hash): Update hash.
 2018-11-05 04:00:43 -05:00
Eric Bavier cddc044ce7
libreoffice: honor '--cores=...' during build. 
* gnu/packages/libreoffice.scm (libreoffice)[configure-flags]: Add
'--with-parallelism' flag.
 2018-11-04 21:56:39 -06:00
Danny Milosavljevic 64eb038eef
gnu: Add fswatch. 
* gnu/packages/monitoring.scm (fswatch): New variable.
 2018-11-05 03:01:21 +01:00
Luther Thompson 1417f50317
gnu: python-ilinkedlist: Update to 0.2.0. 
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Vagrant Cascadian b6e9514864
gnu: pelican: Update to 3.7.1. 
* gnu/packages/python.scm (pelican): Update to 3.7.1.
  [home-page]: Use HTTPS URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Pkill -9 c834bd3bb2
gnu: xonotic: Add icon and category to desktop files. 
* gnu/packages/games.scm (xonotic): Add icon ("xonotic") and category
("Game") to the .desktop files for Xonotic.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Ludovic Courtès 688d1a01e4
artwork: Clone over HTTPS. 
Suggested by Leo Famulari <leo@famulari.name>
at <https://lists.gnu.org/archive/html/help-guix/2018-11/msg00039.html>.

* gnu/artwork.scm (%artwork-repository): Switch to HTTPS URL.
 2018-11-05 00:08:47 +01:00
Ludovic Courtès ab3c60ace3
install: Parameterize the profile name for 'populate-single-profile-directory'. 
* gnu/build/install.scm (populate-single-profile-directory): Add
 #:profile-name.  Replace hard-coded occurrences of "guix-profile" with
PROFILE-NAME.  Make the symlink part under /root a function of
PROFILE-NAME.
 2018-11-05 00:08:46 +01:00
Pierre Neidhardt 97b7b96efc
gnu: go-github-com-urfave-cli: Remove duplicate declaration. 
* gnu/packages/golang.scm (go-github-com-urfave-cli): Remove duplicate declaration.
 2018-11-04 23:33:24 +01:00
Efraim Flashner 30012b7408
gnu: myrepos: Wrap the webcheckout binary. 
* gnu/packages/version-control.scm (myrepos)[arguments]: Add a custom
'wrap-webcheckout phase to wrap webcheckout with its perl libraries.
[inputs]: Add perl-encode-locale, perl-html-parser, perl-http-date,
perl-http-message, perl-libwww, perl-try-tiny, perl-uri.
 2018-11-04 12:45:27 +02:00
Efraim Flashner f909e21797
gnu: debian-archive-keyring: Update to 2018.1. 
* gnu/packages/debian.scm (debian-archive-keyring): Update to 2018.1.
[source]: Download from git repository.
 2018-11-04 12:00:13 +02:00
Efraim Flashner 2e77bbed71
gnu: ruby@2.3: Update to 2.3.8. 
* gnu/packages/ruby.scm (ruby@2.3): Update to 2.3.8.
 2018-11-04 12:00:13 +02:00
Efraim Flashner d4b5e4bb73
gnu: debootstrap: Update to 1.0.109. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.109.
 2018-11-04 12:00:10 +02:00
Arun Isaac 3e84ce51fb
gnu: mpop: Update to 1.4.0. 
* gnu/packages/mail.scm (mpop): Update to 1.4.0.
 2018-11-04 10:36:17 +05:30
Efraim Flashner e9f305a1c8
gnu: sbcl-lift: Don't keep the bundled website. 
* gnu/packages/lisp.scm (sbcl-lift)[source]: Remove bundled website.
[arguments]: Remove custom 'make-gzips-writable phase.
 2018-11-03 20:43:35 +02:00
Ludovic Courtès 0e091b3e93
gnu: totem: Update to 3.26.2. 
* gnu/packages/gnome.scm (totem): Update to 3.26.2.
 2018-11-03 15:44:40 +01:00
Ludovic Courtès 504f0cf198
gnu: emacs-debbugs: Update to 0.16. 
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.16.
 2018-11-03 15:44:24 +01:00
Ludovic Courtès a7c8574f39
gnu: perl-image-exiftool: Update to 11.11. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.11.
 2018-11-03 15:16:42 +01:00
Ludovic Courtès 46c8f53ba8
gnu: emacs-dired-du: Update to 0.5.1. 
* gnu/packages/emacs.scm (emacs-dired-du): Update to 0.5.1.
 2018-11-03 15:16:20 +01:00
Ludovic Courtès 8e5c59868c
gnu: diffoscope: Update to 104. 
* gnu/packages/package-management.scm (diffoscope): Update to 104.
 2018-11-03 15:16:02 +01:00
Arun Isaac b1c7f5fff9
gnu: emacs-emms: Update to 5.1. 
* gnu/packages/emacs.scm (emacs-emms): Update to 5.1.
 2018-11-03 19:14:05 +05:30
Tobias Geerinckx-Rice 3995e85462
gnu: tor: Update to 0.3.4.9. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.9.
 2018-11-02 19:51:12 +01:00
Julien Lepiller ff349415b2
gnu: python-apache-libcloud: Update to 2.3.0. 
* gnu/packages/python.scm (python-apache-libcloud)
(python2-apache-libcloud): Update to 2.3.0.
 2018-11-02 14:32:24 +01:00
Danny Milosavljevic 722aac1ea1
Merge remote-tracking branch 'origin/wip-rust' into master. 2018-11-02 11:01:45 +01:00
Leo Famulari b3325eb306
gnu: Go 1.11: Avoid unnecessary store references. 
This shrinks the closure of Go 1.11 from 1379 MiB to 581 MiB.

Fixes <https://bugs.gnu.org/32949>.

* gnu/packages/golang.scm (go-1.11)[arguments]: Add a 'delete-extraneous-files'
phase.
 2018-11-01 23:23:09 -04:00
Julien Lepiller 16b89ecc1f
gnu: Add openjdk10. 
* gnu/packages/java.scm (openjdk10): New variable.
 2018-11-01 21:16:59 +01:00
Julien Lepiller dd74105925
gnu: Add openjdk9. 
* gnu/packages/java.scm (openjdk9): New variable.
 2018-11-01 20:34:08 +01:00
Leo Famulari 7571ec3576
gnu: MPD: Update to 0.20.23. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.23.
 2018-11-01 15:30:05 -04:00
Leo Famulari 33279c2a19
gnu: mpd-mpc: Update to 0.31. 
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.31.
[native-inputs]: Add python-sphinx.
 2018-11-01 15:30:05 -04:00
Leo Famulari 361dd8a556
gnu: icecast: Update to 2.4.4 [fixes CVE-2018-18820]. 
* gnu/packages/xiph.scm (icecast): Update to 2.4.4.
 2018-11-01 12:33:14 -04:00
Rutger Helling d7ca1899aa
gnu: mame: Update to 0.203. 
* gnu/packages/emulators.scm (mame): Update to 0.203.
 2018-11-01 09:24:52 +01:00
Rutger Helling a769a4d432
gnu: xpra: Update to 2.4.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.1.
 2018-11-01 08:32:45 +01:00
Rutger Helling e7039f10ec
gnu: dolphin-emu: Use ffmpeg instead of ffmpeg@3.4. 
* gnu/packages/emulators.scm (dolphin-emu): Use ffmpeg instead of ffmpeg@3.4.
 2018-11-01 08:20:13 +01:00
Rutger Helling ee3dd7a83a
gnu: sdl2: Update to 2.0.9. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.9.
 2018-11-01 08:20:13 +01:00
Tobias Geerinckx-Rice 66a2a47117
gnu: whois: Update to 5.4.0. 
* gnu/packages/networking.scm (whois): Update to 5.4.0.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice 38fda1cc36
gnu: highlight: Update to 3.47. 
* gnu/packages/pretty-print.scm (highlight): Update to 3.47.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice a72d337fbc
gnu: python-jsonrpclib-pelix: Update to 0.3.2. 
* gnu/packages/python.scm (python-jsonrpclib-pelix): Update to 0.3.2.
[arguments]: Disable #:tests?.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice 60ed87871d
gnu: python-pynacl: Update to 1.3.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.3.0.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 351a12b0a7
gnu: oniguruma: Update to 6.9.0. 
* gnu/packages/textutils.scm (oniguruma): Update to 6.9.0.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 33bddd309c
gnu: motion: Install translations. 
* gnu/packages/video.scm (motion)[native-inputs]: Add gettext-minimal.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 2ea678fabf
gnu: motion: Don't use unstable tarball. 
* gnu/packages/video.scm (motion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 4fbcfc1482
Keep (gnu packages video) module imports in order. 
* gnu/packages/video.scm (define-module): Re-order module imports
alphabetically.
 2018-11-01 04:33:54 +01:00
Tobias Geerinckx-Rice c3069cd183
gnu: motion: Update to 4.2. 
* gnu/packages/video.scm (motion): Update to 4.2.
 2018-11-01 04:32:35 +01:00
Tobias Geerinckx-Rice 2930a39b16
gnu: julia: Update objconv input to 2018-10-07. 
* gnu/packages/julia.scm (julia)[input]: Update objconf to 2018-10-07.
 2018-11-01 04:32:35 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-31 21:57:02 +02:00
Leo Famulari c438e0cc74
gnu: curl: Update grafted replacement to 7.62.0 [security fixes]. 
Fixes CVE-2018-{16839,16840,16842}.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.62.0.
(curl-7.61.1): Replace with ...
(curl-7.62.0): ... new variable.
 2018-10-31 13:54:20 -04:00
Rutger Helling 124e9d6e0a
gnu: dolphin-emu: Update to commit 22ddd11. 
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 22ddd11.
[arguments]: Return #t with phase 'fixgcc7.
 2018-10-31 10:40:04 +01:00
Rutger Helling 3126bee69a
gnu: wine-staging: Update to 3.19. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.19.
* gnu/packages/wine.scm (wine-staging): Update to 3.19.
 2018-10-31 09:39:55 +01:00
Mark H Weaver a45a92ccd8
gnu: webkitgtk@2.22: Update to 2.22.3. 
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.3.
 2018-10-31 01:47:52 -04:00
Arun Isaac c7ac8e36e2
gnu: quaternion: Update to 0.0.9.3. 
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.3.
[inputs]: Add qtquickcontrols, qtsvg and qttools.
[arguments]: Remove fix-libqmatrixclient-dynamic-linking phase. Add
wrap-program phase.
 2018-10-31 09:31:59 +05:30
Arun Isaac c6588749a6
gnu: libqmatrixclient: Update to 0.4.0. 
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.4.0.
 2018-10-31 09:31:59 +05:30
Tobias Geerinckx-Rice b590951ff2
gnu: meandmyshadow: Update home page. 
* gnu/packages/games.scm (meandmyshadow)[home-page]: Follow permanent
redirect.
 2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 1d9a9d27ae
gnu: meandmyshadow: Update to 0.5. 
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 4cae7e67f3
gnu: hyperrogue: Update to 10.4x. 
* gnu/packages/games.scm (hyperrogue): Update to 10.4x.
 2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice 21fc352bad
gnu: yosys: Don't use unstable tarball. 
* gnu/packages/fpga.scm (yosys)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice becee7029f
gnu: disorderfs: Update to 0.5.5. 
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.5.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 58cd3123ac
gnu: pulseview: Update to 0.4.1. 
* gnu/packages/electronics.scm (pulseview): Update to 0.4.1.
[arguments]: Remove CMAKE_CXX_FLAGS from #:configure-flags. (Keep)
build(ing) the unit tests. Add a ‘remove-empty-doc-directory’ phase.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 61c58b7827
gnu: sigrok-cli: Update to 0.7.1. 
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.1.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 295fc4152a
gnu: cloc: Update to 1.80. 
* gnu/packages/code.scm (cloc): Update to 1.80.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 1204402a90
gnu: python-partd: Update to 0.3.9. 
* gnu/packages/python.scm (python-partd): Update to 0.3.9.
 2018-10-30 23:40:42 +01:00
Ricardo Wurmus fd649d1e68
gnu: Add r-r2glmm. 
* gnu/packages/cran.scm (r-r2glmm): New variable.
 2018-10-30 22:47:35 +01:00
Ricardo Wurmus 7c02dd6268
gnu: Add r-lmertest. 
* gnu/packages/cran.scm (r-lmertest): New variable.
 2018-10-30 22:47:26 +01:00
Ricardo Wurmus 49863fd695
gnu: Add r-afex. 
* gnu/packages/cran.scm (r-afex): New variable.
 2018-10-30 22:47:18 +01:00
Ricardo Wurmus 20ff6e3a34
gnu: Add r-mvabund. 
* gnu/packages/cran.scm (r-mvabund): New variable.
 2018-10-30 22:47:10 +01:00
Ricardo Wurmus 4fb35ebd8d
gnu: Add r-rcppgsl. 
* gnu/packages/cran.scm (r-rcppgsl): New variable.
 2018-10-30 22:47:00 +01:00
Ricardo Wurmus 373cef0a0c
gnu: Add r-tweedie. 
* gnu/packages/cran.scm (r-tweedie): New variable.
 2018-10-30 22:46:47 +01:00
Ricardo Wurmus 32499b26e6
gnu: Add r-clusteval. 
* gnu/packages/cran.scm (r-clusteval): New variable.
 2018-10-30 22:13:01 +01:00
Ricardo Wurmus 7a06cdfa8c
gnu: r-analytics: Update to 3.0. 
* gnu/packages/cran.scm (r-analytics): Update to 3.0.
[propagated-inputs]: Add r-vim.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus e5f9e9fa79
gnu: r-radiant-data: Update to 0.9.7. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7.
[propagated-inputs]: Add r-shinyfiles and r-summarytools.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 39528a5ee9
gnu: r-pracma: Update to 2.1.8. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 4633c8e6fc
gnu: r-shinydashboard: Update to 0.7.1. 
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.1.
[propagated-inputs]: Add r-promises.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 65279cc8f3
gnu: Add r-shinyfiles. 
* gnu/packages/web.scm (r-shinyfiles): New variable.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus a056e2251e
gnu: r-htmlwidgets: Update to 1.3. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.3.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus f697ef4a0d
gnu: r-servr: Update to 0.11. 
* gnu/packages/web.scm (r-servr): Update to 0.11.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 8871a51350
gnu: r-webshot: Update to 0.5.1. 
* gnu/packages/cran.scm (r-webshot): Update to 0.5.1.
[propagated-inputs]: Add r-callr; remove r-processx and r-withr.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus d42f741035
gnu: r-dendextend: Update to 1.9.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.9.0.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus 31c8d9fe00
gnu: r-emmeans: Update to 1.3.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.0.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus bec74196ea
gnu: r-abps: Update to 0.3. 
* gnu/packages/cran.scm (r-abps): Update to 0.3.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus 464676a970
gnu: r-proc: Update to 1.13.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.13.0.
 2018-10-30 21:48:03 +01:00
Ricardo Wurmus 71d995392b
gnu: r-rdpack: Update to 0.10-1. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.10-1.
 2018-10-30 21:47:54 +01:00
Ricardo Wurmus 081af9fae7
gnu: r-hdf5r: Update to 1.0.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
 2018-10-30 21:47:46 +01:00
Ricardo Wurmus 08645fcff5
gnu: r-fansi: Update to 0.4.0. 
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
 2018-10-30 21:47:37 +01:00
Ricardo Wurmus 7608984fe9
gnu: r-later: Update to 0.7.5. 
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
 2018-10-30 21:47:28 +01:00
Ricardo Wurmus 80234d3294
gnu: r-maptools: Update to 0.9-4. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
 2018-10-30 21:47:20 +01:00
Ricardo Wurmus fda8dd58c2
gnu: r-shinyace: Update to 0.3.2. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
 2018-10-30 21:47:06 +01:00
Ricardo Wurmus 02c57c018a
gnu: r-np: Update to 0.60-9. 
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
 2018-10-30 21:46:57 +01:00
Ricardo Wurmus 44de41b572
gnu: r-expm: Update to 0.999-3. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
 2018-10-30 21:46:48 +01:00
Ricardo Wurmus 484e81f73a
gnu: r-cubature: Update to 1.4-1. 
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
 2018-10-30 21:46:36 +01:00
Ricardo Wurmus 905734fd7c
gnu: r-extradistr: Update to 1.8.10. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
 2018-10-30 21:46:26 +01:00
Ricardo Wurmus 534bf85b9d
gnu: r-ttr: Update to 0.23-4. 
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
 2018-10-30 21:46:17 +01:00
Ricardo Wurmus dda4ce560f
gnu: r-tinytex: Update to 0.9. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
 2018-10-30 21:46:10 +01:00
Ricardo Wurmus a8de3090d8
gnu: r-xfun: Update to 0.4. 
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
 2018-10-30 21:46:00 +01:00
Ricardo Wurmus 8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
 2018-10-30 21:45:51 +01:00
Ricardo Wurmus bba80fadbe
gnu: r-magic: Update to 1.5-9. 
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
 2018-10-30 21:45:42 +01:00
Ricardo Wurmus 5621b8403b
gnu: r-sm: Update to 2.2-5.6. 
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
 2018-10-30 21:45:32 +01:00
Ricardo Wurmus 870faab4b7
gnu: r-xts: Update to 0.11-1. 
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
 2018-10-30 21:45:16 +01:00
Ricardo Wurmus 16a39c2d56
gnu: r-ggridges: Update to 0.5.1. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
 2018-10-30 21:45:07 +01:00
Ricardo Wurmus 9e82d6080e
gnu: r-cli: Update to 1.0.1. 
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
 2018-10-30 21:44:59 +01:00
Ricardo Wurmus 2b8126a4ec
gnu: r-reshape: Update to 0.8.8. 
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
 2018-10-30 21:44:48 +01:00
Ricardo Wurmus ecdfca05c8
gnu: r-ffbase: Update to 0.12.5. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
 2018-10-30 21:44:38 +01:00
Ricardo Wurmus 674c818560
gnu: r-rcpp: Update to 0.12.19. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
 2018-10-30 21:44:28 +01:00
Ricardo Wurmus 0ab28e5450
gnu: r-pkgload: Update to 1.0.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
 2018-10-30 21:43:38 +01:00
Ricardo Wurmus 2657e666cb
gnu: r-pkgbuild: Update to 1.0.2. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
 2018-10-30 21:43:28 +01:00
Ricardo Wurmus 7e127ab128
gnu: r-ps: Update to 1.2.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
 2018-10-30 21:43:19 +01:00
Ricardo Wurmus b62e104b84
gnu: r-ape: Update to 5.2. 
* gnu/packages/cran.scm (r-ape): Update to 5.2.
 2018-10-30 21:43:10 +01:00
Ricardo Wurmus 1c9906c2dd
gnu: r-reprex: Update to 0.2.1. 
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
 2018-10-30 21:42:59 +01:00
Ricardo Wurmus 6b451c0801
gnu: r-gprofiler: Update to 0.6.7. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
 2018-10-30 21:42:48 +01:00
Ricardo Wurmus 4fc6609a0c
gnu: r-keggrest: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
 2018-10-30 21:42:39 +01:00
Ricardo Wurmus 67cfb83ff1
gnu: r-msnbase: Update to 2.6.4. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
 2018-10-30 21:42:31 +01:00
Ricardo Wurmus 807d961cc9
gnu: r-methylkit: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
 2018-10-30 21:42:20 +01:00
Ricardo Wurmus ac0166450d
gnu: r-wgcna: Update to 1.66. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
 2018-10-30 21:42:09 +01:00
Ricardo Wurmus 1182460750
gnu: r-go-db: Update to 3.6.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
 2018-10-30 21:42:00 +01:00
Ricardo Wurmus 466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
 2018-10-30 21:41:12 +01:00
Ricardo Wurmus dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
 2018-10-30 21:40:57 +01:00
Ricardo Wurmus 72408357fa
gnu: r-genomicranges: Update to 1.32.7. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
 2018-10-30 21:40:48 +01:00
Ricardo Wurmus 9dad1957ab
gnu: r-limma: Update to 3.36.5. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
 2018-10-30 21:40:40 +01:00
Ricardo Wurmus 57cf6a14f0
gnu: r-edger: Update to 3.22.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
 2018-10-30 21:40:32 +01:00
Ricardo Wurmus eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
 2018-10-30 21:40:22 +01:00
Ricardo Wurmus e563acb96b
gnu: r-iranges: Update to 2.14.12. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
 2018-10-30 21:40:12 +01:00
Ricardo Wurmus 192c19f484
gnu: r-vegan: Update to 2.5-3. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
 2018-10-30 21:40:00 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus 6ab5670aba
gnu: r-nloptr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
 2018-10-30 21:39:39 +01:00
Ricardo Wurmus c5bd8a7c23
gnu: r-devtools: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
 2018-10-30 21:39:29 +01:00
Ricardo Wurmus aa99568639
gnu: r-evaluate: Update to 0.12. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
 2018-10-30 21:39:16 +01:00
Ricardo Wurmus 60aac7ec16
gnu: r-robustbase: Update to 0.93-3. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
 2018-10-30 21:39:06 +01:00
Ricardo Wurmus 16508df1d3
gnu: r-cardata: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
 2018-10-30 21:38:55 +01:00
Ricardo Wurmus 98a4b9d040
gnu: r-zoo: Update to 1.8-4. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
 2018-10-30 21:38:35 +01:00
Ricardo Wurmus 834f203c07
gnu: r-tidyselect: Update to 0.2.5. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
 2018-10-30 21:38:25 +01:00
Ricardo Wurmus 33fb92aacd
gnu: r-doparallel: Update to 1.0.14. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
 2018-10-30 21:38:16 +01:00
Ricardo Wurmus 3ea7aefd59
gnu: r-snow: Update to 0.4-3. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
 2018-10-30 21:38:03 +01:00
Ricardo Wurmus 62a7492c90
gnu: r-plotrix: Update to 3.7-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
 2018-10-30 21:37:53 +01:00
Ricardo Wurmus 943cab4f72
gnu: r-rstudioapi: Update to 0.8. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
 2018-10-30 21:37:35 +01:00
Ricardo Wurmus 960425c9e3
gnu: r-commonmark: Update to 1.6. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
 2018-10-30 21:37:25 +01:00
Ricardo Wurmus e028eaa992
gnu: r-coda: Update to 0.19-2. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
 2018-10-30 21:37:14 +01:00
Ricardo Wurmus 672ba7494b
gnu: r-data-table: Update to 1.11.8. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
 2018-10-30 21:37:03 +01:00
Ricardo Wurmus f75ee8c691
gnu: r-dplyr: Update to 0.7.7. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
 2018-10-30 21:36:54 +01:00
Ricardo Wurmus 17f6198f06
gnu: r-rlang: Update to 0.3.0.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
 2018-10-30 21:36:44 +01:00
Ricardo Wurmus 822863f8f9
gnu: r-r6: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
 2018-10-30 21:36:35 +01:00
Ricardo Wurmus 3a83251c4f
gnu: r-testthat: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
 2018-10-30 21:36:24 +01:00
Ricardo Wurmus cb448dd251
gnu: r-microbenchmark: Update to 1.4-6. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
 2018-10-30 21:36:13 +01:00
Ricardo Wurmus 9f7438355d
gnu: r-mine: Update to 0.6. 
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
 2018-10-30 21:36:04 +01:00
Ricardo Wurmus 9413424d2d
gnu: r-ggplot2: Update to 3.1.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
 2018-10-30 21:35:52 +01:00
Ricardo Wurmus 058394967c
gnu: r-digest: Update to 0.6.18. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
 2018-10-30 21:35:40 +01:00
Ricardo Wurmus b85f805090
gnu: r-mgcv: Update to 1.8-25. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
 2018-10-30 21:35:26 +01:00
Ricardo Wurmus 2f5e8f6094
gnu: r-mass: Update to 7.3-51. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
 2018-10-30 21:35:12 +01:00
Ricardo Wurmus 2ea75a8369
gnu: Add r-npsurv. 
* gnu/packages/cran.scm (r-npsurv): New variable.
 2018-10-30 21:35:03 +01:00
Ricardo Wurmus 7c7ee6cf4c
gnu: Add r-lsei. 
* gnu/packages/cran.scm (r-lsei): New variable.
 2018-10-30 21:34:55 +01:00
Ricardo Wurmus 74cc74e434
gnu: Add r-summarytools. 
* gnu/packages/cran.scm (r-summarytools): New variable.
 2018-10-30 21:34:45 +01:00
Ricardo Wurmus 319a80ce96
gnu: Add r-pander. 
* gnu/packages/cran.scm (r-pander): New variable.
 2018-10-30 21:34:35 +01:00
Ricardo Wurmus 9b02d1a11e
gnu: Add r-rapportools. 
* gnu/packages/cran.scm (r-rapportools): New variable.
 2018-10-30 21:34:25 +01:00
Ricardo Wurmus 5df4e27fec
gnu: Add r-rcmdcheck. 
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
 2018-10-30 21:34:15 +01:00
Ricardo Wurmus 7d8f34707a
gnu: Add r-xopen. 
* gnu/packages/cran.scm (r-xopen): New variable.
 2018-10-30 21:34:05 +01:00
Ricardo Wurmus cbc8e6dd4a
gnu: Add r-remotes. 
* gnu/packages/cran.scm (r-remotes): New variable.
 2018-10-30 21:33:56 +01:00
Ricardo Wurmus 993426244e
gnu: Add r-sessioninfo. 
* gnu/packages/cran.scm (r-sessioninfo): New variable.
 2018-10-30 21:33:47 +01:00
Ricardo Wurmus efefd3ec42
gnu: Add r-usethis. 
* gnu/packages/cran.scm (r-usethis): New variable.
 2018-10-30 21:33:37 +01:00
Ricardo Wurmus 153e5b2ddc
gnu: Add r-clisymbols. 
* gnu/packages/cran.scm (r-clisymbols): New variable.
 2018-10-30 21:33:25 +01:00
Ricardo Wurmus d6871153c8
gnu: Add r-fs. 
* gnu/packages/cran.scm (r-fs): New variable.
 2018-10-30 21:33:13 +01:00
Ricardo Wurmus 21405e81e7
gnu: Add r-gh. 
* gnu/packages/cran.scm (r-gh): New variable.
 2018-10-30 21:33:00 +01:00
Ricardo Wurmus 03f8011220
gnu: Add r-ini. 
* gnu/packages/cran.scm (r-ini): New variable.
 2018-10-30 21:32:45 +01:00
Danny Milosavljevic 4df3e06210
gnu: rust: Document upstream's assessment. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Add URL.
 2018-10-30 20:42:04 +01:00
Danny Milosavljevic 52bc7df1a1
gnu: rust: Remove binary bootstrapper. 
* gnu/packages/rust.scm (rust-bootstrap): Delete variable.
 2018-10-30 20:42:00 +01:00
Danny Milosavljevic 44d530ef09
gnu: rust@1.23.0: Bootstrap from rust@1.22.0. 
* gnu/packages/rust.scm (rust-1.23): Bootstrap from rust@1.22.0.
 2018-10-30 20:41:55 +01:00
Danny Milosavljevic a75b8c08c0
gnu: rust@1.23.0: Inherit from rust@1.22.0. 
* gnu/packages/rust.scm (rust-1.23)[inherit]: Inherit from rust-1.22.
[arguments]: Inherit from rust-1.22.  Delete "remove-ar" phase.
 2018-10-30 20:41:50 +01:00
Danny Milosavljevic 7bf169f75c
gnu: rust: Hide "ar" entry from rust@1.21.0. 
* gnu/packages/rust.scm (rust-1.21)[arguments]<#:phases>[remove-ar]: New
phase.
 2018-10-30 20:41:45 +01:00
Danny Milosavljevic 46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
 2018-10-30 20:20:55 +01:00
Efraim Flashner a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
 2018-10-30 11:15:40 +02:00
Efraim Flashner 24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-30 11:15:39 +02:00
Efraim Flashner e726f0939e
gnu: mupdf: Update license list. 
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
 2018-10-30 11:15:36 +02:00
Efraim Flashner b1435fe735
gnu: mupdf: Update to 1.14. 
* gnu/packages/pdf.scm (mupdf): Update to 1.14.
[source]: Don't remove all the bundled libraries.
[arguments]: Add 'configure-flags to use system libraries.
 2018-10-30 11:15:09 +02:00
Efraim Flashner f8ddf719f3
gnu: mujs: Install shared library. 
* gnu/packages/javascript.scm (mujs)[arguments]: Add custom phase to
install libmujs.so.
 2018-10-30 11:03:48 +02:00
Efraim Flashner 1371e2250a
gnu: mujs: Update to 1.0.5. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.5.
 2018-10-30 11:03:06 +02:00
Leo Famulari a2717e6986
gnu: calcurse: Use HTTPS URLs. 
Reported by Marco van Hulten <marco@hulten.org>.

* gnu/packages/calcurse.scm (calcurse)[source, home-page]: Use HTTPS URLs.
 2018-10-29 20:45:57 -04:00
Leo Famulari b4c93a78c8
gnu: xorg-server: Update to 1.20.3 [fixes CVE-2018-14665]. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.3.
 2018-10-28 18:22:46 -04:00
Mathieu Othacehe 81f12f33b7
gnu: linux-libre: Enable BOCHS DRM support. 
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Build DRM BOCHS support
as a module.  It adds DRM support for BOCHS dispi vga interface used by
qemu (-vga std option). It will also be useful for QEMU 3.0 to enable the new
"bochs-display" display device.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
 2018-10-28 20:42:50 +09:00
Efraim Flashner 852a5692bb
gnu: qt@4: Use invoke. 
* gnu/packages/qt.scm (qt@4)[arguments]: Use invoke.
 2018-10-28 09:52:46 +02:00
Efraim Flashner 1f71daf499
gnu: qt@4: Update build config. 
* gnu/packages/qt.scm (qt@4)[arguments]: Substitute hardcoded '/bin/ls'
invocation. Add configure-flags to not build the examples or demos.
Don't use the precompiled headers.
 2018-10-28 09:52:38 +02:00
Efraim Flashner 3ea61f9642
gnu: qt: Use invoke. 
* gnu/packages/qt.scm (qt)[arguments]: Use invoke.
 2018-10-28 09:52:16 +02:00
Efraim Flashner 124351efad
gnu: qt: Add vulkan support. 
* gnu/packages/qt.scm (qt, qtbase)[native-inputs]: Add vulkan-headers.
(qt@4)[native-inputs]: Don't add vulkan-headers.
(qttools)[native-inputs]: Add vulkan-headers.
 2018-10-28 09:51:56 +02:00
Efraim Flashner d28af1991a
gnu: qt: Use system sqlite. 
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
 2018-10-28 09:51:25 +02:00
Efraim Flashner 7930cfc989
gnu: qt: Update to 5.11.2. 
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.11.2.
 2018-10-28 09:51:05 +02:00
Tobias Geerinckx-Rice 2b9b4b1fe3
gnu: hashcat-utils: Update to 1.9. 
And trim lines to 80 characters.

* gnu/packages/password-utils.scm (hashcat-utils): Update to 1.9.
[source]: Parametrise.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 2792d8a865
gnu: fzy: Update to 1.0. 
* gnu/packages/shellutils.scm (fzy): Update to 1.0.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 31b619566d
gnu: fzy: Don't use unstable tarball. 
* gnu/packages/shellutils.scm (fzy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 6135735b52
gnu: perl-www-mechanize: Update to 1.89. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.89.
 2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice fc82538c15
gnu: perl-xml-xpath: Update to 1.44. 
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.44.
 2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice a8b12397a1
gnu: flatbuffers: Fix typo in description. 
* gnu/packages/serialization.scm (flatbuffers)[description]: Hyphenate.
 2018-10-28 02:34:06 +01:00
Kei Kebreau f3dd10dfe7
gnu: libmspack: Update to 0.8 [fixes CVE-2018-{18584,18585,18586}]. 
* gnu/packages/compression.scm (libmspack): Update to 0.8.
 2018-10-27 20:04:20 -04:00
Ludovic Courtès 1f889cac4e
gnu: mailutils: Add dependency on GSASL. 
* gnu/packages/mail.scm (mailutils)[inputs]: Add GSASL.
 2018-10-28 01:10:55 +02:00
Ludovic Courtès ac3b4b124f
gnu: mailutils: Install modules to …/guile/site/2.2. 
* gnu/packages/mail.scm (mailutils)[arguments]: Pass
"--with-guile-site-dir".
 2018-10-28 01:09:54 +02:00
Efraim Flashner 20a3df0fd3
gnu: mailutils: Update to 3.5. 
* gnu/packages/mail.scm (mailutils): Update to 3.5.
[source]: Remove patch, remove snippet.
[native-inputs]: Remove flex, bison.
[inputs]: Remove guile-2.0, add guile-2.2.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-28 00:02:08 +03:00
Ricardo Wurmus 763d44920d
gnu: guile-sdl2: Update to 0.3.1. 
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.1.
 2018-10-27 20:08:50 +02:00
Mădălin Ionel Patrașcu b509df82de
gnu: Add r-abundant. 
* gnu/packages/cran.scm (r-abundant): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-10-27 18:54:39 +02:00
Mădălin Ionel Patrașcu b5a310056c
gnu: Add r-quic. 
* gnu/packages/cran.scm (r-quic): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-10-27 18:54:39 +02:00
Ricardo Wurmus 67e0fb8b49
gnu: Add xrandr-invert-colors. 
* gnu/packages/xdisorg.scm (xrandr-invert-colors): New variable.
 2018-10-27 18:54:39 +02:00
Tomáš Čech e9a041577a
gnu: Add telegram-purple. 
* gnu/packages/messaging.scm (telegram-purple): New variable.
* gnu/packages/patches/telegram-purple-adjust-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-27 16:39:29 +02:00
Ludovic Courtès 244a0d5aad
gnu: libzmf: Disable '-Werror'. 
Fixes builds on i686-linux.

* gnu/packages/libreoffice.scm (libzmf)[arguments]: New field.
 2018-10-27 16:39:29 +02:00
Pierre Neidhardt 1316413558
gnu: git: Add "subtree" output. 
* gnu/packages/version-control.scm (git)[outputs]: Add "subtree".
 2018-10-27 16:29:47 +02:00
Florian Pelz abc98e3be5
services: httpd: Allow using it with PHP. 
* gnu/services/web.scm (httpd): Make existing httpd-module API public.
* doc/guix.texi (Apache HTTP Server): Document its usage with PHP-FPM.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2018-10-27 14:08:45 +01:00
Meiyo Peng cbea1e8dd2
gnu: lxqt-build-tools: Define LXQT_DATA_DIR and LXQT_ETC_XDG_DIR. 
* gnu/packages/lxqt.scm (lxqt-build-tools)[arguments]: Define LXQT_DATA_DIR
and LXQT_ETC_XDG_DIR in the configure flags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-27 19:50:41 +08:00
Meiyo Peng 6f00fb75ca
gnu: lxqt: Correct licenses for several packages. 
* gnu/packages/lxqt.scm (pcmanfm-qt, lximage-qt, pavucontrol-qt, qtermwidget)
(qterminal, screengrab, lxqt): Correct license to GPL2+.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-27 18:17:08 +08:00
宋文武 a46c00a3d8
gnu: lxqt: Propagate qterminal actually. 
* gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Fix typo of 'qterminal'.
 2018-10-27 11:34:57 +08:00
Tobias Geerinckx-Rice 3825b44448
gnu: xmlsec-nss: Fix tests (and hence build). 
* gnu/packages/xml.scm (xmlsec-nss)[native-inputs]: Add nss:bin to
provide the certutil command.
 2018-10-27 04:49:19 +02:00
Tobias Geerinckx-Rice 4795e5e177
gnu: units: Update to 2.18. 
* gnu/packages/maths.scm (units): Update to 2.18.
 2018-10-27 04:47:56 +02:00
Tobias Geerinckx-Rice 6d9a690927
gnu: parallel: Update to 20181022. 
* gnu/packages/parallel.scm (parallel): Update to 20181022.
 2018-10-27 04:47:19 +02:00
Tobias Geerinckx-Rice 574d877e40
gnu: gvpe: Update to 3.1. 
* gnu/packages/vpn.scm (gvpe): Update to 3.1.
[source]: Remove obsolete snippet.
[native-inputs]: Add pkg-config.
 2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b2d286545d
gnu: gama: Update to 2.01. 
* gnu/packages/gps.scm (gama): Update to 2.01.
 2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b106b78cf8
gnu: perl-x11-xcb: Update to 0.18. 
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.18.
 2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice 429a332b1c
gnu: flatbuffers: Update to 1.10.0. 
* gnu/packages/serialization.scm (flatbuffers): Update to 1.10.0.
 2018-10-27 04:47:18 +02:00
Eric Bavier 829785c11d
gnu: Add tnef. 
* gnu/packages/mail.scm (tnef): New variable.
 2018-10-26 21:16:42 -05:00
HiPhish 01a0a0c445
gnu: Add lua5.1-lpeg and lua5.1-lmpack. 
* gnu/packages/lua.scm (lua5.1-lpeg): New variable.
* gnu/packages/serialization.scm (lua5.1-libmpack): New variable.

The packages lua-lpeg and lua-libmpack had no Lua 5.1 variants. These
packages will be needed to build Neovim properly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-26 21:17:00 +02:00
Pierre-Antoine Rouby 3239dcd38d
gnu: Add jp2a. 
* gnu/packages/image.scm: New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-26 21:16:13 +02:00
Ludovic Courtès fdf0248428
gnu: sbcl-lift: Fix 'license' field. 
The invalid 'license' field was preventing evaluations from completing.

* gnu/packages/lisp.scm (sbcl-lift)[license]: Change to LICENSE:EXPAT.
 2018-10-26 21:07:03 +02:00
Nikolai Merinov 2e2b8635b9
gnu: rust: Update to 1.28. 
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.27): ... this.
(rust): New variable.
 2018-10-26 18:11:15 +02:00
Nikolai Merinov e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues. 
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
 2018-10-26 18:11:15 +02:00
Meiyo Peng 1fdcee026b
gnu: Add lxqt. 
* gnu/packages/lxqt.scm (lxqt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:07:05 +08:00
Meiyo Peng a457e3f6ef
gnu: libqtxdg: Simplify configure flags. 
* gnu/packages/lxqt.scm (libqtxdg)[arugemnts]: Use relative path for
'QTXDGX_ICONENGINEPLUGIN_INSTALL_PATH'.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:07:05 +08:00
Meiyo Peng 097166dfb0
gnu: lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path. 
* gnu/packages/lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:07:04 +08:00
Meiyo Peng 31fd62c8ca
gnu: Add obconf-qt. 
* gnu/packages/lxqt.scm (obconf-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:06:57 +08:00
Meiyo Peng 32b74b7028
gnu: Add compton-conf. 
* gnu/packages/lxqt.scm (compton-conf): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:41:38 +08:00
Meiyo Peng 9886134cc6
gnu: Add qps. 
* gnu/packages/lxqt.scm (qps): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:36:43 +08:00
Meiyo Peng 7e9e775f44
gnu: Add qterminal. 
* gnu/packages/lxqt.scm (qterminal): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:31:15 +08:00
Meiyo Peng 4b88ab554c
gnu: Add screengrab. 
* gnu/packages/lxqt.scm (screengrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:20:21 +08:00
Meiyo Peng 604bdae7e5
gnu: Add lximage-qt. 
* gnu/packages/lxqt.scm (lximage-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:12:17 +08:00
Meiyo Peng 26127ebb97
gnu: lxqt.scm: Sort packages into base, core, etc. 
* gnu/packages/lxqt.scm: Sort packages into base, core, etc.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:05:12 +08:00
Meiyo Peng 0aab234954
gnu: Add qtermwidget. 
* gnu/packages/lxqt.scm (qtermwidget): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 18:54:16 +08:00
Tobias Geerinckx-Rice 21c51ebd66
gnu: hplip: Update home page. 
* gnu/packages/cups.scm (hplip)[home-page]: Follow its permanent
redirection.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice b17004f9f9
gnu: hplip: Update to 3.18.9. 
* gnu/packages/cups.scm (hplip): Update to 3.18.9.
[arguments]: Add the resulting libraries to the build's RUNPATH.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 2fba511e0f
gnu: libsigrok: Update to 0.5.1. 
* gnu/packages/electronics.scm (libsigrok): Update to 0.5.1.
[arguments]: Adjust to split udev rules and clean up a little.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 0e8e29088f
gnu: dnsmasq: Update to 2.80 [security fixes]. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.80.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice e81ddedaef
gnu: tinc: Use HTTPS for sources and home page. 
* gnu/packages/vpn.scm (tinc)[source, home-page]: Use HTTPS.
 2018-10-26 02:30:51 +02:00
Leo Famulari dea0178fb1
gnu: Mercurial: Update to 4.7.2. 
* gnu/packages/version-control.scm (mercurial): Update to 4.7.2.
 2018-10-25 20:00:27 -04:00
Meiyo Peng 84f6a9907b
gnu: Add pavucontrol-qt. 
* gnu/packages/lxqt.scm (pavucontrol-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:38:57 +08:00
Meiyo Peng 8b1d43a755
gnu: Add lxqt-themes. 
* gnu/packages/lxqt.scm (lxqt-themes): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:34:55 +08:00
Meiyo Peng 5663b5b073
gnu: Add lxqt-qtplugin. 
* gnu/packages/lxqt.scm (lxqt-qtplugin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:25:54 +08:00
Meiyo Peng 643961bbc6
gnu: Add lxqt-powermanagement. 
* gnu/packages/lxqt.scm (lxqt-powermanagement): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:21:26 +08:00
Meiyo Peng ca302c3e8c
gnu: Add lxqt-openssh-askpass. 
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:17:16 +08:00
Meiyo Peng bf0da63aae
gnu: Add lxqt-policykit. 
* gnu/packages/lxqt.scm (lxqt-policykit): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:12:19 +08:00
Meiyo Peng a98000a462
gnu: Add lxqt-notificationd. 
* gnu/packages/lxqt.scm (lxqt-notificationd): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:12:19 +08:00
Meiyo Peng f2b48558df
gnu: lxqt.scm: Move qttools from inputs to native-inputs. 
* gnu/packages/lxqt.scm: Move qttools from inputs to native-inputs.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:12:13 +08:00
Meiyo Peng 35bfe41a01
gnu: Add lxqt-config. 
* gnu/packages/lxqt.scm (lxqt-config): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 19:16:18 +08:00
Ricardo Wurmus 7b63047c94
gnu: Add r-sjplot. 
* gnu/packages/cran.scm (r-sjplot): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 489a6178e6
gnu: Add r-ggeffects. 
* gnu/packages/cran.scm (r-ggeffects): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 413944234c
gnu: Add r-glmmtmb. 
* gnu/packages/cran.scm (r-glmmtmb): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus aa4bde0b3a
gnu: Add r-sjstats. 
* gnu/packages/cran.scm (r-sjstats): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 3b8a3f5548
gnu: Add r-tmb. 
* gnu/packages/cran.scm (r-tmb): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9b3ecb60e2
gnu: Add r-bayesplot. 
* gnu/packages/cran.scm (r-bayesplot): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus bd531e83d1
gnu: Add r-coin. 
* gnu/packages/cran.scm (r-coin): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 63fcb88a50
gnu: Add r-pwr. 
* gnu/packages/cran.scm (r-pwr): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 55a08dceb5
gnu: Add r-emmeans. 
* gnu/packages/cran.scm (r-emmeans): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 7753b54366
gnu: Add r-multcomp. 
* gnu/packages/cran.scm (r-multcomp): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 6ce07cf99d
gnu: Add r-th-data. 
* gnu/packages/cran.scm (r-th-data): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 302db58552
gnu: Add r-sandwich. 
* gnu/packages/cran.scm (r-sandwich): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 69bb2d9966
gnu: r-sjmisc: Update to 2.7.5. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9bf745c931
gnu: r-sjlabelled: Update to 1.0.14. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14.
 2018-10-25 05:17:42 +02:00
Tobias Geerinckx-Rice 9ac59ad30a
gnu: sfml: Update to 2.5.1. 
* gnu/packages/game-development.scm (sfml): Update to 2.5.1.
 2018-10-25 04:59:33 +02:00
Tobias Geerinckx-Rice 95f6adae34
gnu: sfml: Don't use unstable tarball. 
* gnu/packages/game-development.scm (sfml)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-10-25 04:59:32 +02:00
Tobias Geerinckx-Rice b865e7c254
gnu: cdogs-sdl: Update to 0.6.8. 
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.8.
 2018-10-25 04:59:29 +02:00
Ricardo Wurmus e2ec95c4eb
gnu: Add pdfpc. 
* gnu/packages/pdf.scm (pdfpc): New variable.
 2018-10-25 01:08:09 +02:00
Tobias Geerinckx-Rice f65fdd95df
gnu: Add hangups. 
* gnu/packages/messaging.scm (hangups): New public variable.
 2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 56a5ef4cb2
gnu: Add python-mechanicalsoup. 
* gnu/packages/python-web.scm (python-mechanicalsoup)
(python2-mechanicalsoup): New public variable.
 2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 11d99192c7
gnu: Add python-reparser. 
* gnu/packages/python.scm (python-reparser, python2-reparser):
New public variable.
 2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice d4eb8a21a6
gnu: Add python-readlike. 
* gnu/packages/python.scm (python-readlike, python2-readlike):
New public variables.
 2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice 5b59c77585
gnu: minixml: Update to 2.12. 
* gnu/packages/xml.scm (minixml): Update to 2.12.
[arguments]: Add the resulting libraries to the build's RUNPATH.
 2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice ac9f481979
gnu: iproute2: Update to 4.19.0. 
* gnu/packages/linux.scm (iproute): Update to 4.19.0.
 2018-10-24 21:34:20 +02:00
Tobias Geerinckx-Rice f437e39aa2
gnu: loksh: Use PREFIX. 
* gnu/packages/shells.scm (loksh)[argumentss]: Substitute PREFIX for
DESTDIR #:make-flags.
 2018-10-24 21:34:20 +02:00
Meiyo Peng c1144c78ad
gnu: Add libkscreen. 
* gnu/packages/kde.scm (libkscreen): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng a6b941ddd1
gnu: lxqt.scm: Add prefix to licenses imports. 
* gnu/packages/lxqt.scm: Import (guix licenses) with prefix "license:".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng 34e08de321
gnu: Add lxqt-admin. 
* gnu/packages/lxqt.scm (lxqt-admin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng 2bdab26f06
gnu: Add lxqt-about. 
* gnu/packages/lxqt.scm (lxqt-about): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng d6fd4a76eb
gnu: Add pcmanfm-qt. 
* gnu/packages/lxqt.scm (pcmanfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng 79f9e4e0b5
gnu: Add libfm-qt. 
* gnu/packages/lxqt.scm (libfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng dbb4f7d0a6
gnu: Add lxqt-sudo. 
* gnu/packages/lxqt.scm (lxqt-sudo): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng cc7f417572
gnu: Add lxqt-runner. 
* gnu/packages/lxqt.scm (lxqt-runner): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng af291d1cdf
gnu: Add lxqt-panel. 
* gnu/packages/lxqt.scm (lxqt-panel): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng fbe645eafa
gnu: Add libsysstat. 
* gnu/packages/lxqt.scm (libsysstat): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng fab3484657
gnu: Add lxqt-globalkeys. 
* gnu/packages/lxqt.scm (lxqt-globalkeys): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Marius Bakke 545da9fd5f
gnu: python-flake8: Update to 3.6.0. 
* gnu/packages/check.scm (python-hypothesis)[native-inputs]: Change
PYTHON-FLAKE8 to PYTHON-FLAKE8-3.5.
* gnu/packages/python.scm (python-flake8, python2-flake8): Rename to ...
(python-flake8-3.5, python2-flake8-3.5): ... this.
(python-flake8, python2-flake8): New public variables.
 2018-10-24 16:34:23 +02:00
Pierre Neidhardt 96b4977a19
gnu: Add gx-go. 
* gnu/packages/ipfs.scm (gx-go): New variable.
 2018-10-24 14:41:44 +02:00
Pierre Neidhardt e82ae67302
gnu: Add go-github-com-whyrusleeping-gx-util. 
* gnu/packages/ipfs.scm (go-github-com-whyrusleeping-gx-util): New variable.
 2018-10-24 14:41:44 +02:00
Pierre Neidhardt 5b6c3ad0cd
gnu: Add go-github-com-kr-fs. 
* gnu/packages/golang.scm (go-github-com-kr-fs): New variable.
 2018-10-24 14:41:44 +02:00
Efraim Flashner 96bdf904ac
gnu: dotherside: Update home-page. 
* gnu/packages/qt.scm (dotherside)[home-page]: Fix project's home-page.
 2018-10-24 14:17:53 +03:00
Pierre Neidhardt 202c1b9703
gnu: Add gx. 
* gnu/packages/ipfs.scm (gx): New variable.
 2018-10-24 12:27:59 +02:00
Pierre Neidhardt 566f13f845
gnu: Add go-github-com-ipfs-go-ipfs-api. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api): New variable.
 2018-10-24 12:27:59 +02:00
Pierre Neidhardt 247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
 2018-10-24 12:27:59 +02:00
Pierre Neidhardt 56eb7bd33c
gnu: Add go-github-com-whyrusleeping-stump. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-stump): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38566e975e
gnu: Add go-github-com-whyrusleeping-progmeter. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-progmeter): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt 7bd9020e48
gnu: Add go-github-com-whyrusleeping-json-filter. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-json-filter): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt b5bb0b500b
gnu: Add go-github-com-urfave-cli. 
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt 20f48e4b5d
gnu: Add go-github-com-sabhiram-go-gitignore. 
* gnu/packages/golang.scm (go-github-com-sabhiram-go-gitignore): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt ad8d463740
gnu: Add go-github-com-cheekybits-is. 
* gnu/packages/golang.scm (go-github-com-cheekybits-is): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38d346dcc6
gnu: Add go-github-com-whyrusleeping-tar-utils. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-tar-utils): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt 66fb6e292a
gnu: Add go-github-com-multiformats-go-multiaddr-net. 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr-net): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt e53121b36f
gnu: Add go-github-com-multiformats-go-multiaddr. 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 8cb9128173
gnu: Add go-github-com-mitchellh-go-homedir. 
* gnu/packages/golang.scm (go-github-com-mitchellh-go-homedir): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 77d8a91792
gnu: Add go-github-com-libp2p-go-libp2p-metrics. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-metrics): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 43a5c17737
gnu: Add go-github-com-libp2p-go-libp2p-protocol. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-protocol): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 1db1e3c79e
gnu: Add go-github-com-libp2p-go-libp2p-peer. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-peer): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 2e42e587b4
gnu: Add go-github-com-multiformats-go-multihash. 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multihash): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 9a7f157571
gnu: Add go-github-com-spaolacci-murmur3. 
* gnu/packages/golang.scm (go-github-com-spaolacci-murmur3): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 90f2a84805
gnu: Add go-github-com-minio-blake2b-simd. 
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 27d59d8bf5
gnu: Add go-github-com-gxed-hashland-keccakpg. 
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 15272a5053
gnu: Add go-github-com-mr-tron-base58. 
* gnu/packages/golang.scm (go-github-com-mr-tron-base58): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt 71f3680499
gnu: Add go-github-com-libp2p-go-libp2p-crypto. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-crypto): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt ff2d11c3ce
gnu: Add go-github-com-minio-sha256-simd. 
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt d5599afadf
gnu: Add go-github-com-btcsuite-btcd-btcec. 
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): New variable.
 2018-10-24 12:13:48 +02:00
Pierre Neidhardt 171c3259fc
gnu: Add go-github-com-btcsuite-btclog. 
* gnu/packages/golang.scm (go-github-com-btcsuite-btclog): New variable.
 2018-10-24 12:13:48 +02:00
Pierre Neidhardt 6a95e3a3a4
gnu: Add go-github-com-davecgh-go-spew. 
* gnu/packages/golang.scm (go-github-com-davecgh-go-spew): New variable.
 2018-10-24 12:13:48 +02:00
Pierre Neidhardt 386bd7ba39
gnu: Add go-github-com-libp2p-go-flow-metrics. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-flow-metrics): New variable.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt 48a279ee14
gnu: go-golang-org-x-crypto-union: Wrap all crypto packages. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Include
go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160,
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3 in union.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt 19789c8b91
gnu: Add go-golang-org-x-crypto-sha3. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-sha3): New variable.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt 6fa257cca7
gnu: Add go-golang-org-x-crypto-blake2s. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-blake2s): New variable.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt a9010ead4c
gnu: Add go-golang-org-x-crypto-ripemd160. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-ripemd160): New variable.
 2018-10-24 12:13:21 +02:00
Pierre Neidhardt 7eb0ad380b
gnu: Add go-golang-org-x-crypto-ed25519. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-ed25519): New variable.
 2018-10-24 12:13:21 +02:00
Pierre Neidhardt 830dc25176
gnu: Move go-golang-org-x-crypto-union from syncthing.scm to golang.scm 
* gnu/packages/syncthing.scm (go-golang-org-x-crypto-union): Delete.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Add.
 2018-10-24 12:13:21 +02:00
Pierre Neidhardt 5787e15230
gnu: Move go-github-com-gogo-protobuf* from syncthing.scm to golang.scm 
* gnu/packages/syncthing.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Delete.

* gnu/packages/golang.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Add.
 2018-10-24 10:46:05 +02:00
Tobias Geerinckx-Rice 569adffe4b
gnu: pcsc-lite: Update to 1.8.24. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.24.
 2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice 716cd19ad2
gnu: loksh: Update to 6.4. 
* gnu/packages/shells.scm (loksh): Update to 6.4.
[inputs]: Add ncurses.
 2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice e5d757709a
gnu: loksh: Don't use unstable tarball. 
* gnu/packages/shells.scm (loksh)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-24 05:59:35 +02:00
Tobias Geerinckx-Rice d0d3ed6dfc
gnu: tinc: Update to 1.0.35 [fixes CVE-2018-{16737,16738,16758}]. 
* gnu/packages/vpn.scm (tinc): Update to 1.0.35.
 2018-10-24 05:59:35 +02:00
Mark H Weaver ce7ceef37f
gnu: linux-libre: Update to 4.19. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.
(%linux-libre-hash): Update hash.
(%linux-libre-4.18-patches): Rename to ...
(%linux-libre-4.19-patches): ... this, and remove a patch that is
no longer needed.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-4.19-patches instead of %linux-libre-4.18-patches.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: Remove files.
* gnu/packages/aux-files/linux-libre/4.19-arm.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-i686.conf,
gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2018-10-23 22:57:14 -04:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE. 
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 94617bddb0
gnu: libbytesize: Update to 1.4. 
* gnu/packages/c.scm (libbytesize): Update to 1.4.
[source]: Parametrise.
 2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 50f5aa4b9e
gnu: xmlsec: Update to 1.2.27. 
* gnu/packages/xml.scm (xmlsec): Update to 1.2.27.
[source]: Don't rely on NAME.
 2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 0ba0ab814a
gnu: Add wavemon. 
* gnu/packages/hardware.scm (wavemon): New public variable.
 2018-10-24 03:58:20 +02:00
Mark H Weaver d78587edca
gnu: icecat: Add fixes from mozilla-esr60 [security fixes]. 
Includes fixes for CVE-2018-12389, CVE-2018-12390, CVE-2018-12391,
CVE-2018-12392, CVE-2018-12393, CVE-2018-12395, CVE-2018-12396, and
CVE-2018-12397.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected changesets from the
upstream mozilla-esr60 repository.  Relabel some previously existing patches
to reflect CVE assignments.
 2018-10-23 19:41:47 -04:00
Brett Gilio b4237a6ec0
gnu: emacs-nov-el: Update to 0.2.6. 
* gnu/packages/emacs.scm (emacs-nov-el): Update to 0.2.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-23 23:58:39 +02:00
Leo Famulari 12995856e2
gnu: libssh: Fetch the source code more efficiently. 
* gnu/packages/ssh.scm (libssh)[source]: Use the git:// protocol.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-23 23:58:39 +02:00
Laura Lazzati b55697fbb4
gnu: Add r-aspi. 
* gnu/packages/cran.scm (r-aspi): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-10-23 23:20:13 +02:00
Pierre Neidhardt d89872f955
gnu: sbcl-parse-float: Remove comment about license. 
* gnu/packages/lisp.scm (sbcl-parse-float): The license really is public domain.
 2018-10-23 20:36:58 +02:00
Marius Bakke 0c8e255549
gnu: python-attrs: Update to 18.2.0. 
* gnu/packages/python.scm (python-attrs): Update to 18.2.0.
[arguments]: New field.
[native-inputs]: Add PYTHON-PYMPLER.
(python-attrs-bootstrap): Stay on version 17.4.0.
 2018-10-23 17:11:03 +02:00
Marius Bakke 5176795d22
gnu: Add python-pympler. 
* gnu/packages/python.scm (python-pympler, python2-pympler): New public variables.
 2018-10-23 17:11:03 +02:00
Marius Bakke 78da6977c7
gnu: suil: Use python2 for building. 
* gnu/packages/audio.scm (suil)[arguments]: Set #:python.
 2018-10-23 16:59:29 +02:00
Marius Bakke 22ce8b56f2
gnu: ganv: Use python2 for building. 
* gnu/packages/gtk.scm (ganv)[arguments]: Set #:python.
 2018-10-23 16:59:29 +02:00
Meiyo Peng bf076d8ba6
gnu: Add libstatgrab. 
* gnu/packages/lxqt.scm (libstatgrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 22:39:09 +08:00
Meiyo Peng 64fac507dd
gnu: Add libdbusmenu-qt. 
* gnu/packages/lxqt.scm (libdbusmenu-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 22:23:49 +08:00
Meiyo Peng d58aefdf06
gnu: lxqt.scm: Sort packages alphabetically. 
* gnu/packages/lxqt.scm: Sort packages alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 21:37:48 +08:00
Meiyo Peng 088096aa0e
gnu: lxqt-build-tools: Update download URL and home page URL. 
* gnu/packages/lxqt.scm (lxqt-build-tools)
[source]: Update download URL to the 'lxqt' repository.
[home-page]: Use HTTPS.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 21:33:45 +08:00
Meiyo Peng 70c488f8dd
gnu: lxqt-session: Update to 0.13.0. 
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 21:29:55 +08:00
Nicolas Goaziou f0ac761f95
gnu: grammalecte: Update home page. 
* gnu/packages/dictionaries.scm (grammalecte)[home-page]: Update URL.
 2018-10-23 09:59:16 +02:00
Leo Famulari a89f731b15
gnu: Xiph: Use HTTPS URLs. 
* gnu/packages/xiph.scm (libogg, libvorbis, libtheora, speex, speexdsp, ao,
flac, libkate, vorbis-tools, opus-tools opusfile, icecast, libshout)[source]:
Use HTTPS URLs.
(icecast)[home-page]: Use HTTPS URL.
 2018-10-23 00:18:17 -04:00
Leo Famulari a640492f6d
gnu: Opus: Update to 1.3. 
* gnu/packages/xiph.scm (opus): Update to 1.3.
 2018-10-23 00:18:17 -04:00
Leo Famulari d0ff383ed8
gnu: opus-tools: Update to 0.2. 
* gnu/packages/xiph.scm (opus-tools): Update to 0.2.
[native-inputs]: Add pkg-config.
[inputs]: Add libopusenc and opusfile. Remove libogg and opus.
 2018-10-23 00:18:17 -04:00
Leo Famulari 844b3272da
gnu: opusfile: Propagate dependencies required in pkg-config. 
* gnu/packages/xiph.scm (opusfile)[inputs]: Move libogg and openssl to
propagated-inputs.
 2018-10-23 00:18:17 -04:00
Leo Famulari ce08d54c35
gnu: Add libopusenc. 
* gnu/packages/xiph.scm (libopusenc): New variable.
 2018-10-23 00:18:13 -04:00
Tobias Geerinckx-Rice d6a9c4ecfb
gnu: unbound: Update to 1.8.1. 
* gnu/packages/dns.scm (unbound): Update to 1.8.1.
 2018-10-23 04:18:50 +02:00
Tobias Geerinckx-Rice 661da25133
gnu: Remove duplicate import from (gnu packages messaging). 
* gnu/packages/messaging.scm (define-module): Remove duplicate module
import.  Order the remainder alphabetically.
 2018-10-23 04:18:40 +02:00
Tobias Geerinckx-Rice ee5c83533d
gnu: cppcheck: Update to 1.85. 
* gnu/packages/check.scm (cppcheck): Update to 1.85.
 2018-10-23 03:14:31 +02:00
Tobias Geerinckx-Rice 3891c38346
gnu: bs1770gain: Update to 0.5.1. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.1.
 2018-10-23 03:14:30 +02:00
Tobias Geerinckx-Rice 2820e31590
gnu: zstd: Update to 1.3.7. 
* gnu/packages/compression.scm (zstd): Update to 1.3.7.
 2018-10-23 03:14:30 +02:00
Marius Bakke 4cdbffdc2f
gnu: python-stem: Update to 1.7.0. 
* gnu/packages/python.scm (python-stem): Update to 1.7.0.
[arguments]: Remove obsolete phase.
[native-inputs]: Change PYTHON-PEP8 to PYTHON-PYCODESTYLE.
 2018-10-23 00:35:05 +02:00
Marius Bakke 3a23036a0a
gnu: python-datrie: Fix FTBFS with Python 3.7. 
* gnu/packages/python.scm (python-datrie)[arguments]: Add phase 'cythonize'.
 2018-10-22 23:08:14 +02:00
Marius Bakke c166a88dea
Merge branch 'master' into core-updates 2018-10-22 23:07:16 +02:00
Marius Bakke 63abd1e2a3
gnu: python-pymongo: Update to 3.7.2. 
* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
 2018-10-22 23:01:19 +02:00
Marius Bakke 47d7c10387
gnu: python-sure: Update to 1.4.11. 
* gnu/packages/python.scm (python-sure): Update to 1.4.11.
 2018-10-22 23:01:19 +02:00
Marius Bakke 9b9aaa57e3
gnu: python-markdown: Update to 3.0.1. 
* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
 2018-10-22 23:01:19 +02:00
Marius Bakke 1b50df7d5b
gnu: python-markdown: Update home page. 
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
 2018-10-22 23:01:19 +02:00
Marius Bakke cb61baf0e7
gnu: python-m2crypto: Update to 0.30.1. 
* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
 2018-10-22 23:01:19 +02:00
Marius Bakke e810de3e68
gnu: python-m2crypto: python-typing is only needed for python2. 
* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
 2018-10-22 23:01:19 +02:00
Marius Bakke 90fb136ff7
gnu: xorg-server: Update to 1.20.2. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
 2018-10-22 23:01:19 +02:00
Marius Bakke 4350cacdf7
gnu: xf86-input-libinput: Update to 0.28.1. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke 3743e117a6
gnu: libmd: Update to 1.0.1. 
* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke f38eedd518
gnu: samba: Update to 4.8.6. 
* gnu/packages/samba.scm (samba): Update to 4.8.6.
 2018-10-22 23:01:18 +02:00
Marius Bakke 3ad0a35890
gnu: Add GN. 
* gnu/packages/build-tools.scm (gn): New public variable.
 2018-10-22 23:01:18 +02:00
Marius Bakke f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1. 
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke b45688313b
gnu: python-mistune: Update to 0.8.4. 
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
 2018-10-22 23:01:18 +02:00
Meiyo Peng 9861bcd182
gnu: liblxqt: Update to 0.13.0. 
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-22 22:09:51 +08:00
Meiyo Peng 50401c2a68
gnu: libqtxdg: Update to 3.2.0. 
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-22 22:09:51 +08:00
Christopher Lemmer Webber 51f4e36cb9
gnu: Add emacs-scribble-mode. 
* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
 2018-10-22 09:59:42 -04:00
Nicolas Goaziou 3a352a4405
gnu: snap: Update to 4.2.2.2. 
* gnu/packages/education.scm (snap): Update to 4.2.2.2.  Update source URL.
 2018-10-22 15:56:38 +02:00
Ricardo Wurmus 09aa3d063a
gnu: Add r-ruvseq. 
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
 2018-10-22 13:00:24 +02:00
Leo Famulari 318ec0a896
gnu: livemedia-utils: Update to 2018.10.17 [fixes CVE-2018-4013]. 
* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
 2018-10-22 03:37:53 -04:00
Leo Famulari 69c69c2d8e
gnu: libmpdclient: Update to 2.16. 
* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
 2018-10-21 23:55:28 -04:00
Tobias Geerinckx-Rice dc3dfa131f
gnu: knot: Update to 2.7.3. 
* gnu/packages/dns.scm (knot): Update to 2.7.3.
 2018-10-22 00:40:05 +02:00
Leo Famulari df71447e99
gnu: OpenSSH: Update to 7.9p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
 2018-10-21 18:33:58 -04:00
Pierre Langlois ff598353c0
gnu: light: Update to 1.2. 
* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-21 23:54:46 +02:00
Luther Thompson 16d212510a
gnu: Add python-ilinkedlist. 
* gnu/packages/python.scm (python-ilinkedlist): New variable.
 2018-10-21 23:54:46 +02:00
Ludovic Courtès aff38cb199
install: Make /var/guix/…/guix-profile a relative symlink. 
* gnu/build/install.scm (populate-single-profile-directory): Make
/var/guix/profiles/per-user/root/guix-profile a relative symlink.
 2018-10-21 23:54:46 +02:00
Ricardo Wurmus f8ee22fc8b
gnu: flexbar: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4d93a9a36c
gnu: seqan: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4b8f4536ce
gnu: khmer: Update to 2.1.2. 
* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus 50e33c3a8c
gnu: python-screed: Update to 1.0. 
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus 0db75f7a79
gnu: fasttree: Use INVOKE. 
* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 38622ccd14
gnu: express-beta-diversity: Update to 1.0.8. 
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus c96ca68f31
gnu: edirect: Update to 10.2.20181018. 
* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 949fa34b84
gnu: eigensoft: Update to 7.2.1. 
* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 5748fe5fcc
gnu: discrover: Fetch from git. 
* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 4348a059e5
gnu: Add texlive-latex-examplep. 
* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus f50f343e0d
gnu: Add texlive-latex-verbatimbox. 
* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 1d0669f4b4
gnu: Add texlive-latex-readarray. 
* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 893fbf1285
gnu: Add texlive-generic-listofitems. 
* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 49b2e86adf
gnu: Add texlive-latex-doi. 
* gnu/packages/tex.scm (texlive-latex-doi): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 1c06399358
gnu: diamond: Fetch from git. 
* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 7a1e62ca67
gnu: delly: Update to 0.7.9. 
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 4d494a4fa3
gnu: deeptools: Update to 3.1.3. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus e6b65bd219
gnu: eolie: Update to 0.9.45. 
* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 42643fc24d
gnu: python-dendropy: Fetch from git. 
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus 6b31040ae6
gnu: python-py2bit: Update to 0.3.0. 
* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus 6b7260bad1
gnu: cutadapt: Update to 1.18. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus a5b0038cbd
gnu: Add python-dnaio. 
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus 7321920cd3
gnu: crossmap: Update to 0.2.9. 
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus 8640f9ec91
gnu: python-twobitreader: Update to 3.1.6. 
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus f5cec0068a
gnu: Add python-bx-python. 
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus 2ba2d62c69
gnu: python2-bx-python: Update to 0.8.2. 
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus 1d18ee6dfd
gnu: bwa-pssm: Fetch from git. 
* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus 9a6808e0c0
gnu: tophat: Update to 2.1.1. 
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-10-21 23:06:45 +02:00
Mark H Weaver f7618bf18e
gnu: linux-libre: Update to 4.18.16. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
 2018-10-21 14:59:30 -04:00
Mark H Weaver 668834cae0
gnu: linux-libre@4.14: Update to 4.14.78. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
 2018-10-21 14:58:03 -04:00
Mark H Weaver c4a7a51292
gnu: linux-libre@4.9: Update to 4.9.135. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
 2018-10-21 14:57:24 -04:00
Mark H Weaver 9ab6c680ba
gnu: linux-libre@4.4: Update to 4.4.162. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
 2018-10-21 14:56:44 -04:00
Pierre Neidhardt 673364cd3a
gnu: Add emacs-slime-repl-ansi-color. 
* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
 2018-10-21 19:49:10 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Marius Bakke e381ae317c
gnu: python2-bz2file: Inherit arguments from python-bzfile. 
* gnu/packages/python.scm (python-bz2file)[properties]: Remove field.
(python2-bz2file): Use PACKAGE-WITH-PYTHON2.
 2018-10-21 18:03:06 +02:00
Marius Bakke ecc604baf0
gnu: klick: Use scons-python2 for building. 
* gnu/packages/music.scm (klick)[arguments]: Add #:scons.
 2018-10-21 18:03:06 +02:00
Marius Bakke 3a69b59332
gnu: rng-tools: Update to 6.6. 
* gnu/packages/linux.scm (rng-tools): Update to 6.6.
 2018-10-21 17:57:01 +02:00
Marius Bakke 9b6dc31b6d
gnu: fluidsynth: Update to 2.0.1. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
 2018-10-21 17:57:01 +02:00
Marius Bakke b6b3e5120a
gnu: libgxps: Update to 0.3.0. 
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-10-21 17:57:01 +02:00
Marius Bakke c8d62d936e
gnu: libgxps: Propagate required inputs. 
* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here.  New field.
 2018-10-21 17:57:01 +02:00
Marius Bakke 920de4286a
gnu: re2: Update to 2018-10-01. 
* gnu/packages/regex.scm (re2): Update to 2018-10-01.
 2018-10-21 17:57:01 +02:00
Marius Bakke ab5e4be647
gnu: libgphoto2: Update to 2.5.19. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
 2018-10-21 17:57:01 +02:00
Marius Bakke 8941b4ab3d
gnu: appstream-glib: Update to 0.7.14. 
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
 2018-10-21 17:57:00 +02:00
Marius Bakke 8eadc55202
gnu: openal: Update to 1.19.1. 
* gnu/packages/audio.scm (openal): Update to 1.19.1.
 2018-10-21 17:57:00 +02:00
Efraim Flashner 2c17bd7b29
gnu: kodi: Disable version checker. 
Fixes bug#32997.

* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
 2018-10-21 16:39:26 +03:00
Ben Woodcroft 617c478506
gnu: python2-dendropy: Disable failing test. 
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
 2018-10-21 22:31:56 +10:00
Ricardo Wurmus 21c837405a
gnu: bowtie: Update to 2.3.4.3. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3.
[source]: Fetch from git.
[inputs]: Replace python-2 with python-wrapper; move perl, perl-clone,
perl-test-deep, and perl-test-simple from here...
[native-inputs]: ...to here.
[arguments]: Simplify check phase.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus f45093429c
gnu: blast+: Use INVOKE and return #T unconditionally. 
* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and
return #T unconditionally.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus f8b697a385
gnu: bedops: Update to 2.4.35. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus 337d72fb44
gnu: bedops: Use INVOKE. 
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus c793f4d8fb
gnu: bamm: Fetch from git and use INVOKE. 
* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
 2018-10-20 23:37:34 +02:00
Ricardo Wurmus 95758e2faf
gnu: aragorn: Use invoke and simplify. 
* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
 2018-10-20 23:37:33 +02:00
Ricardo Wurmus 8b4102b903
gnu: clipper: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
 2018-10-20 23:37:33 +02:00
Ricardo Wurmus 895cf8278a
gnu: python-pybedtools: Update to 0.7.10. 
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
 2018-10-20 23:37:33 +02:00
Ricardo Wurmus 129363b762
gnu: Add bedtools-2.26. 
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
 2018-10-20 23:37:28 +02:00
Kei Kebreau bfa47f14b1
gnu: cataclysm-dda: Update snapshot. 
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
 2018-10-20 14:38:45 -04:00
Kei Kebreau 82cbe4e046
gnu: maxima: Update to 5.42.0. 
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
 2018-10-20 14:38:45 -04:00
Oleg Pykhalov 227da3a4c5
gnu: python-glances: Update to 3.0.2. 
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
 2018-10-20 18:24:23 +03:00
Oleg Pykhalov 67fd64a490
gnu: emacs-hy-mode: Update to 1.0.3. 
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
 2018-10-20 17:48:58 +03:00
Oleg Pykhalov e661dca879
gnu: emacs-erc-hl-nicks: Update to 1.3.3. 
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
 2018-10-20 17:48:49 +03:00
Oleg Pykhalov 91c5e6a69d
gnu: emacs-yasnippet: Update to 0.13.0. 
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
 2018-10-20 17:48:36 +03:00
Oleg Pykhalov 292d637b9e
gnu: emacs-nginx-mode: Update to 1.1.9. 
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
 2018-10-20 17:48:28 +03:00
Oleg Pykhalov 2f1dacc281
gnu: emacs-rainbow-mode: Update to 1.0.1. 
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
 2018-10-20 17:48:07 +03:00
Oleg Pykhalov 45dcdf5349
gnu: emacs-smart-mode-line: Update to 2.12.0. 
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
 2018-10-20 17:47:46 +03:00
Oleg Pykhalov 9137596179
gnu: emacs-fill-column-indicator: Update to 1.89. 
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
 2018-10-20 17:47:13 +03:00
Oleg Pykhalov 83246854f3
gnu: emacs-ggtags: Update to 0.8.13. 
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
 2018-10-20 17:46:43 +03:00
Oleg Pykhalov 42f9ebdc77
gnu: emacs-which-key: Update to 3.3.0. 
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
 2018-10-20 17:37:32 +03:00
Christopher Baines 0d3f170864
gnu: Add soundconverter. 
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-20 12:24:50 +01:00
nixo b5a927b3ba
gnu: Add enchive. 
* gnu/packages/crypto.scm (enchive): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 23:39:41 +02:00
Ludovic Courtès 64791eb7e1
services: ntp: Document 'ntp-service-type' and 'ntp-configuration'. 
* gnu/services/networking.scm (<ntp-configuration>)[servers]: Add
default value.
(ntp-service-type)[default-value]: New field.
(ntp-service): Mark as deprecated.
* gnu/services/desktop.scm (%desktop-services): Use (service
ntp-service-type) instead of calling 'ntp-service'.
* doc/guix.texi (Networking Services): Document 'ntp-service-type' and
'ntp-configuration'.
 2018-10-19 23:39:41 +02:00
Meiyo Peng bc83b2e22f
gnu: Add i3blocks. 
* gnu/packages/wm.scm (i3blocks): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 23:39:37 +02:00
Alex Vong 58352f269e
build-system/haskell: Use 'strip-store-file-name'. 
See the discussion at
<https://lists.gnu.org/archive/html/guix-devel/2018-10/msg00250.html>.

* guix/build/haskell-build-system.scm (package-name-version): Remove it.
(configure): Use 'strip-store-file-name' instead of 'package-name-version'.
(setup-compiler): Likewise.
(make-ghc-package-database): Likewise.
(register): Likewise.
* gnu/packages/haskell.scm (ghc-cairo)[arguments]: Likewise.
* gnu/packages/agda.scm (agda)[arguments]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 23:11:07 +02:00
Ricardo Wurmus cdb84eb0e6
gnu: qsynth: Update to 0.5.3. 
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
 2018-10-19 21:59:28 +02:00
Marius Bakke be200ef316
gnu: texlive-bin: Fix FTBFS on i686-linux. 
* gnu/packages/tex.scm (texlive-bin)[arguments]: Add phase 'disable-failing-test'.
 2018-10-19 18:51:46 +02:00
Ludovic Courtès 0ee6692a63
gnu: sbcl-slime-swank: Remove reference to unbound variable. 
Fixes a regression introduced in commit
c4d4ae1e16.

* gnu/packages/lisp.scm (sbcl-slime-swank)[license]: Remove extra 'license'.
 2018-10-19 18:34:07 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0. 
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0 
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 18:28:57 +02:00
Pierre Neidhardt 3bd45f5c80
gnu: emacs-slime: License is a mix of GPL2+ and public domain. 
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
 2018-10-19 18:00:14 +02:00
Pierre Neidhardt e2e5004f6e
gnu: Add lparallel. 
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
 2018-10-19 17:56:38 +02:00
Pierre Neidhardt 24fd7586a4
gnu: Add sbcl-cl-webkit. 
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
 2018-10-19 17:56:38 +02:00
Pierre Neidhardt c80dfee9f1
gnu: Add sbcl-cl-cffi-gtk. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
 2018-10-19 17:56:38 +02:00
Pierre Neidhardt 7b5b8c4405
gnu: Add sbcl-cl-cffi-gtk-gdk. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt a3bdddc359
gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 9ecc457b52
gnu: Add sbcl-cl-cffi-gtk-pango. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 7176fe7c32
gnu: Add sbcl-cl-cffi-gtk-cairo. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 867b3f4780
gnu: Add sbcl-cl-cffi-gtk-gio. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 77a5461c31
gnu: Add sbcl-cl-cffi-gtk-gobject. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 64dcf7d99b
gnu: Add sbcl-cl-cffi-gtk-glib. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-glib): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt c88985d9b0
gnu: Add sbcl-cl-cffi-gtk. 
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 85be9191ee
gnu: Add closer-mop. 
* gnu/packages/lisp.scm (cl-closer-mop, ecl-closer-mop, sbcl-closer-mop): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 4aa2342008
gnu: Add trivial-garbage. 
* gnu/packages/lisp.scm (cl-trivial-garbage, ecl-trivial-garbage, sbcl-trivial-garbage): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 2cc931db44
gnu: Add cl-unix-opts. 
* gnu/packages/lisp.scm (cl-unix-opts, ecl-unix-opts, sbcl-unix-opts): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt dedbf37e5d
gnu: Add cl-json. 
* gnu/packages/lisp.scm (cl-json, ecl-cl-json, sbcl-cl-json): New variables.
 2018-10-19 17:56:37 +02:00
Pierre Neidhardt 4624d2e2b4
gnu: Add parenscript. 
* gnu/packages/lisp.scm (cl-parenscript, ecl-parenscript, sbcl-parenscript): New variables.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 8f065b47c7
gnu: Add sbcl-cl-sqlite. 
* gnu/packages/lisp.scm (sbcl-cl-sqlite): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 4112307268
gnu: Add sbcl-cffi. 
* gnu/packages/lisp.scm (sbcl-cffi): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt d3142f2ffb
gnu: Add sbcl-cffi-grovel. 
* gnu/packages/lisp.scm (sbcl-cffi-grovel): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 9eea4e0302
gnu: Add sbcl-cffi-libffi. 
* gnu/packages/lisp.scm (sbcl-cffi-libffi): New variable.
 2018-10-19 17:56:36 +02:00
Pierre Neidhardt 99b3d203fb
gnu: Add sbcl-cffi-toolchain. 
* gnu/packages/lisp.scm (sbcl-cffi-toolchain): New variable.
 2018-10-19 17:56:35 +02:00
Pierre Neidhardt 5d9bf76235
gnu: Add sbcl-cffi-bootstrap. 
* gnu/packages/lisp.scm (sbcl-cffi-bootstrap): New variable.
 2018-10-19 17:56:06 +02:00
Pierre Neidhardt 92b1d09b68
gnu: Add queues.priority-cqueue. 
* gnu/packages/lisp.scm (cl-queues.priority-cqueue, ecl-queues.priority-cqueue, sbcl-queues.priority-cqueue): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt 144085cd69
gnu: Add queues.priority-queue. 
* gnu/packages/lisp.scm (cl-queues.priority-queue, ecl-queues.priority-queue, sbcl-queues.priority-queue): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt a889ba99c1
gnu: Add queues.simple-cqueue. 
* gnu/packages/lisp.scm (cl-queues.simple-cqueue, ecl-queues.simple-cqueue, sbcl-queues.simple-cqueue): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt 6fef7c0ec8
gnu: Add queues.simple-queue. 
* gnu/packages/lisp.scm (cl-queues.simple-queue, ecl-queues.simple-queue, sbcl-queues.simple-queue): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt eb766dfed0
gnu: Add queues. 
* gnu/packages/lisp.scm (cl-queues, ecl-queues, sbcl-queues): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt 3f4c21c53e
gnu: Add puri. 
* gnu/packages/lisp.scm (cl-puri, ecl-puri, sbcl-puri): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt 1de50cb73e
gnu: Add ptester. 
* gnu/packages/lisp.scm (cl-ptester, ecl-ptester, sbcl-ptester): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt a28d00d999
gnu: Add simple-scanf. 
* gnu/packages/lisp.scm (cl-simple-scanf, ecl-simple-scanf, sbcl-simple-scanf): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt 28b52970ba
gnu: Add parse-float. 
* gnu/packages/lisp.scm (cl-parse-float, ecl-parse-float, sbcl-parse-float): New variables.
 2018-10-19 17:54:13 +02:00
Pierre Neidhardt 41b3b866ce
gnu: Add proc-parse. 
* gnu/packages/lisp.scm (cl-proc-parse, ecl-proc-parse, sbcl-proc-parse): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 86afb0a272
gnu: Add prove. 
* gnu/packages/lisp.scm (cl-prove, ecl-prove, sbcl-prove): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 1a42bb80cb
gnu: Add prove-asdf. 
* gnu/packages/lisp.scm (cl-prove-asdf, ecl-prove-asdf, sbcl-prove-asdf): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 68a7b929f3
gnu: Add cl-ansi-text. 
* gnu/packages/lisp.scm (cl-ansi-text, ecl-cl-ansi-text, sbcl-cl-ansi-text): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 8caa928dd4
gnu: Add cl-colors. 
* gnu/packages/lisp.scm (cl-colors, ecl-cl-colors, sbcl-cl-colors): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt d414223205
gnu: Add let-plus. 
* gnu/packages/lisp.scm (cl-let-plus, ecl-let-plus, sbcl-let-plus): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 5b8a801d16
gnu: Add lift. 
* gnu/packages/lisp.scm (cl-lift, ecl-lift, sbcl-lift): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 9f3000cc11
gnu: Add anaphora. 
* gnu/packages/lisp.scm (cl-anaphora, ecl-anaphora, sbcl-anaphora): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 19a1c3be97
gnu: Add lisp-unit. 
* gnu/packages/lisp.scm (cl-lisp-unit, ecl-lisp-unit, sbcl-lisp-unit): New variables.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt c4d4ae1e16
gnu: Add sbcl-slime-swank. 
* gnu/packages/lisp.scm (sbcl-slime-swank): New variable.
 2018-10-19 17:54:12 +02:00
Pierre Neidhardt 109ce303f4
gnu: Add cl-string-match. 
* gnu/packages/lisp.scm (cl-string-match, ecl-cl-string-match, sbcl-cl-string-match): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt a927eb3653
gnu: Add ascii-strings. 
* gnu/packages/lisp.scm (cl-ascii-strings, ecl-ascii-strings, sbcl-ascii-strings): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt 8d8d1c8d6c
gnu: Add mgl-pax. 
* gnu/packages/lisp.scm (cl-mgl-pax, ecl-mgl-pax, sbcl-mgl-pax): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt f07efbf1e6
gnu: Add pythonic-string-reader. 
* gnu/packages/lisp.scm (cl-pythonic-string-reader, ecl-pythonic-string-reader, sbcl-pythonic-string-reader): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt fb8c4bc6ba
gnu: Add named-readtables. 
* gnu/packages/lisp.scm (cl-named-readtables, ecl-named-readtables, sbcl-named-readtables): New variables.

FIX named-readtables
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt e549ba0598
gnu: Add ironclad. 
* gnu/packages/lisp.scm (cl-ironclad, ecl-ironclad, sbcl-ironclad): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt fbdd9b2c8b
gnu: Add nibbles. 
* gnu/packages/lisp.scm (cl-nibbles, ecl-nibbles, sbcl-nibbles): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt 5800c538a1
gnu: Add rt. 
* gnu/packages/lisp.scm (cl-rt, ecl-rt, sbcl-rt): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt 1855496813
gnu: Add cl-fad. 
* gnu/packages/lisp.scm (cl-fad, ecl-cl-fad, sbcl-cl-fad): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt 1a3d39c446
gnu: Add 3bmd-ext-code-blocks. 
* gnu/packages/lisp.scm (cl-3bmd-ext-code-blocks, ecl-3bmd-ext-code-blocks, sbcl-3bmd-ext-code-blocks): New variables.
 2018-10-19 17:54:11 +02:00
Pierre Neidhardt ef0c3e1429
gnu: Add 3bmd. 
* gnu/packages/lisp.scm (cl-3bmd, ecl-3bmd, sbcl-3bmd): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt b4ba1c0a38
gnu: Add colorize. 
* gnu/packages/lisp.scm (cl-colorize, ecl-colorize, sbcl-colorize): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt 6a1761cbf6
gnu: Add html-encode. 
* gnu/packages/lisp.scm (cl-html-encode, ecl-html-encode, sbcl-html-encode): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt 141001597d
gnu: Add split-sequence. 
* gnu/packages/lisp.scm (cl-split-sequence, ecl-split-sequence, sbcl-split-sequence): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt bdf83297a8
gnu: Add esrap. 
* gnu/packages/lisp.scm (cl-esrap, ecl-esrap, sbcl-esrap): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt 989cd79b5c
gnu: Add eos. 
* gnu/packages/lisp.scm (cl-eos, ecl-eos, sbcl-eos): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt 8f41fa066e
gnu: Add jpl-queues. 
* gnu/packages/lisp.scm (cl-jpl-queues, ecl-jpl-queues, sbcl-jpl-queues): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt 232e1abce7
gnu: Add jpl-util. 
* gnu/packages/lisp.scm (cl-jpl-util, ecl-jpl-util, sbcl-jpl-util): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt ef091e9155
gnu: Add cl-yacc. 
* gnu/packages/lisp.scm (cl-cl-yacc, ecl-cl-yacc, sbcl-cl-yacc): New variables.
 2018-10-19 17:54:10 +02:00
Pierre Neidhardt 2d418bfa39
gnu: Add babel. 
* gnu/packages/lisp.scm (cl-babel, ecl-babel, sbcl-babel): New variables.
 2018-10-19 17:54:09 +02:00
Pierre Neidhardt 4ef9ddbdae
gnu: Add hu.dwim.stefil. 
* gnu/packages/lisp.scm (cl-hu.dwim.stefil, ecl-hu.dwim.stefil, sbcl-hu.dwim.stefil): New variables.
 2018-10-19 17:54:09 +02:00
Pierre Neidhardt 0cd6fb4970
gnu: Add hu.dwim.asdf. 
* gnu/packages/lisp.scm (cl-hu.dwim.asdf, ecl-hu.dwim.asdf, sbcl-hu.dwim.asdf): New variables.
 2018-10-19 17:54:09 +02:00
Pierre Neidhardt 8c661ff1ef
gnu: Add trivial-features. 
* gnu/packages/lisp.scm (cl-trivial-features, ecl-trivial-features, sbcl-trivial-features): New variables.
 2018-10-19 17:54:09 +02:00
Pierre Neidhardt 99c6124229
gnu: Add cl-strings. 
* gnu/packages/lisp.scm (cl-strings, sbcl-cl-strings, ecl-cl-strings): New variables.
 2018-10-19 17:25:40 +02:00
Pierre Neidhardt e7b2937d19
gnu: Add texlive-latex-koma-script. 
* gnu/packages/tex.scm (texlive-latex-koma-script): New variable.
 2018-10-19 15:17:55 +02:00
Pierre Neidhardt 17ef5f1ff9
gnu: Add texlive-latex-pgf. 
* gnu/packages/tex.scm (texlive-latex-pgf): New variable.
 2018-10-19 15:16:40 +02:00
Pierre Neidhardt 910d67fb95
gnu: Add texlive-generic-ulem. 
* gnu/packages/tex.scm (texlive-generic-ulem): New variable.
 2018-10-19 15:11:52 +02:00
Pierre Neidhardt 0e73c11bb2
gnu: Add texlive-latex-eukdate. 
* gnu/packages/tex.scm (texlive-latex-eukdate): New variable.
 2018-10-19 15:10:18 +02:00
Pierre Neidhardt 707babdde4
gnu: Add texlive-latex-needspace. 
* gnu/packages/tex.scm (texlive-latex-needspace): New variable.
 2018-10-19 15:10:02 +02:00
Pierre Neidhardt b718793e2a
gnu: Add texlive-latex-ms. 
* gnu/packages/tex.scm (texlive-latex-ms): New variable.
 2018-10-19 15:08:45 +02:00
Rutger Helling 0fd874ebd1
gnu: youtube-dl: Update to 2018.10.05. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.10.05.
 2018-10-19 11:43:35 +02:00
Ludovic Courtès 1d7fb035fc
gnu: guile-commonmark: Update to 0.1.1. 
* gnu/packages/guile.scm (guile-commonmark): Update to 0.1.1.
[source](modules, snippet): Remove.
[native-inputs]: New field.
 2018-10-19 10:25:04 +02:00
Chris Marusich 2f4d43584c
system: Rename .zlogin to .zprofile. 
Reported by Meiyo Peng <meiyo.peng@gmail.com>.

* gnu/system/shadow.scm (default-skeletons): Rename zlogin to zprofile.
 2018-10-19 00:45:20 -07:00
Rutger Helling 7d1f21c69a
gnu: vulkan-headers: Update to 1.1.85.0. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.85.0.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
 2018-10-19 08:43:29 +02:00
Leo Famulari eed00f93e8
gnu: libssh: Update to 0.7.6 [fixes CVE-2018-10933]. 
* gnu/packages/ssh.scm (libssh): Update to 0.7.6.
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Adjust patch.
 2018-10-18 23:08:45 -04:00
Mark H Weaver 75b2afd953
gnu: linux-libre: Update to 4.18.15. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.15.
(%linux-libre-hash): Update hash.
 2018-10-18 22:53:00 -04:00
Mark H Weaver ef8e7e3298
gnu: linux-libre@4.14: Update to 4.14.77. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.77.
(%linux-libre-4.14-hash): Update hash.
 2018-10-18 22:52:58 -04:00
Mark H Weaver 1e672a01be
gnu: linux-libre@4.9: Update to 4.9.134. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.134.
 2018-10-18 22:52:56 -04:00
Marius Bakke 29f40ee547
gnu: libgit2: Update to 0.26.7. 
* gnu/packages/version-control.scm (libgit2): Update to 0.26.7.
 2018-10-19 03:18:57 +02:00
Marius Bakke 2c0a3ed1f9
gnu: tmux: Update to 2.8. 
* gnu/packages/tmux.scm (tmux): Update to 2.8.
 2018-10-19 03:18:57 +02:00
Marius Bakke a908ffd1ab
gnu: notmuch: Update to 0.28. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.
 2018-10-19 03:18:57 +02:00
Marius Bakke 3d472b5ee1
services: WPA Supplicant: Fix syntax error. 
This is a followup to commit acce0a474c.  No
idea how these disappeared.. :-/

* gnu/services/networking.scm (wpa-supplicant-shepherd-service): Add missing
parens.
 2018-10-19 03:18:22 +02:00
Mark H Weaver 402e60859d
gnu: linux-libre: Enable SHPC PCI Hotplug driver on ARM64. 
Fixes <https://bugs.gnu.org/32840> on ARM64.

* gnu/packages/aux-files/linux-libre/4.18-arm64.conf: Add
CONFIG_HOTPLUG_PCI_SHPC=y.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 00:11:42 +02:00
Ludovic Courtès d36cd88873
gnu: grub-efi: Fix an uninitialized variable issue. 
* gnu/packages/patches/grub-check-error-efibootmgr.patch: Add hunk to
correct uninitialized variable.
 2018-10-19 00:11:42 +02:00
Efraim Flashner b50d58b344
gnu: sharutils: Fix bundled gnulib. 
* gnu/packages/compression.scm (sharutils)[source]: Add snippet to fix
bundled gnulib.
 2018-10-18 21:46:33 +03:00
Efraim Flashner f793b4ef96
gnu: squashfs-tools: Fix building with glibc@2.28. 
* gnu/packages/compression.scm (squashfs-tools)[arguments]: Add
substitution to include missing import. Return #t from all phases.
 2018-10-18 21:31:52 +03:00
Efraim Flashner 1febc93f9b
Revert "gnu: python-fonttools: Update to 3.30.0." 
This reverts commit 5fb543b3f7.

python2-fonttools has 2700 dependants, only the python3 version is
failing.
 2018-10-18 21:25:36 +03:00
Efraim Flashner 5fb543b3f7
gnu: python-fonttools: Update to 3.30.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.30.0.
 2018-10-18 21:14:16 +03:00
Marius Bakke e8ef3cc4d6
gnu: swig: Fix build on i686. 
* gnu/packages/patches/swig-guile-gc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/swig.scm (swig)[source](patches): Use it.
 2018-10-18 19:13:13 +02:00
Alex Vong 33428d1267
gnu: javacc: Bootstrap from javacc-4 instead of bootstrap binary. 
* gnu/packages/java.scm (javacc)[source](snippet): Delete bootstrap binary.
[arguments]: Set 'bootstrap-jar' path.
[native-inputs]: Add 'javacc-4'.
 2018-10-18 14:59:55 +02:00
Alex Vong 6662d65f96
gnu: javacc: Use snippet to delete bundled jars. 
* gnu/packages/java.scm (javacc-4)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase and add 'delete-tests'
phase.
* gnu/packages/java.scm (javacc)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase.
 2018-10-18 14:59:52 +02:00
Alex Vong 53fb0476ec
gnu: javacc: 'javacc' now inherits from 'javacc-4'. 
* gnu/packages/java.scm (javacc, javacc-4): 'javacc' now inherits from
'javacc-4' instead of the opposite around.
 2018-10-18 14:59:44 +02:00
Ludovic Courtès 39d7fdce45
services: dhcp-client: Deprecate 'dhcp-client-service' procedure. 
* gnu/services/networking.scm (dhcp-client-service-type): Add default
value.
* gnu/system/examples/bare-bones.tmpl: Use (service
dhcp-client-service-type) instead of (dhcp-client-service).
* gnu/system/examples/beaglebone-black.tmpl: Likewise.
* gnu/tests/base.scm (%avahi-os): Likewise.
* gnu/tests/databases.scm (%memcached-os): Likewise.
(%mongodb-os): Likewise.
* gnu/tests/dict.scm (%dicod-os): Likewise.
* gnu/tests/mail.scm (%opensmtpd-os): Likewise.
(%exim-os): Likewise.
(%dovecot-os): Likewise.
* gnu/tests/messaging.scm (run-xmpp-test): Likewise.
(run-bitlbee-test): Likewise.
* gnu/tests/monitoring.scm (%prometheus-node-exporter-os): Likewise.
* gnu/tests/networking.scm (%inetd-os): Likewise.
(run-iptables-test): Likewise.
* gnu/tests/nfs.scm (%base-os): Likewise.
* gnu/tests/rsync.scm (%rsync-os): Likewise.
* gnu/tests/ssh.scm (run-ssh-test): Likewise.
* gnu/tests/version-control.scm (%cgit-os): Likewise.
(%git-http-os): Likewise.
(%gitolite-os): Likewise.
* gnu/tests/virtualization.scm (%libvirt-os): Likewise.
* gnu/tests/web.scm (%httpd-os): Likewise.
(%nginx-os): Likewise.
(%varnish-os): Likewise.
(%php-fpm-os): Likewise.
(%hpcguix-web-os): Likewise.
(%tailon-os): Likewise.
* tests/guix-system.sh: Likewise.
* doc/guix.texi (Networking Services): Document
'dhcp-client-service-type' and remove 'dhcp-client-service'.
 2018-10-18 01:12:22 +02:00
Kei Kebreau b286e3b368
gnu: retux: Update to 1.3.6. 
* gnu/packages/games.scm (retux): Update to 1.3.6.
 2018-10-17 17:04:27 -04:00
Kei Kebreau 0592db2873
gnu: wesnoth: Update to 1.14.5. 
* gnu/packages/games.scm (wesnoth): Update to 1.14.5.
 2018-10-17 16:27:38 -04:00
Marius Bakke 16f14f63db
gnu: Python: Adjust grafts for core-updates merge. 
This adjust the grafts from a55ebe2e3a and
90aeaee861 to apply to Python 2.7.15 and 3.7.0.

* gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/python.scm (python-2/fixed): Remove patches that are already
present in 2.7.15.
(python-3/fixed): Remove obsolete phase.
 2018-10-17 20:53:24 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Marius Bakke acce0a474c
services: wpa-supplicant: Extend to support configuration parameters. 
This allows using WPA Supplicant "standalone" without an additional
network manager.  The default configuration is unchanged.

* gnu/services/networking.scm (<wpa-supplicant-configuration>): New record type.
(wpa-supplicant-shepherd-service): Pass configuration records to the daemon.
(wpa-supplicant-service-type): Adjust accordingly.
* doc/guix.texi (Networking Services): Document the new service type.
 2018-10-17 20:34:37 +02:00
Marius Bakke a55ebe2e3a
gnu: python2: Add upstream security fixes. 
This addresses CVE-2018-{1060,1061,14647,1000802}.

* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
 2018-10-17 20:34:37 +02:00
Marius Bakke 90aeaee861
gnu: python: Fix CVE-2018-14647. 
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
 2018-10-17 20:34:37 +02:00
Efraim Flashner 1d43756107
gnu: strace: Check before enabling personalities. 
* gnu/packages/linux.scm (strace)[arguments]: Add configure flag to
check for personality support.
 2018-10-17 21:28:05 +03:00
Kei Kebreau 82402f76be
gnu: hyperrogue: Update to 10.4t. 
* gnu/packages/games.scm (hyperrogue): Update to 10.4t.
[arguments]: Modify 'make-flags'. Modify 'configure' and 'install' phases.
 2018-10-17 13:47:41 -04:00
Efraim Flashner fb3ff265cd
gnu: python-icalendar: Update to 4.0.3. 
* gnu/packages/python.scm (python-icalendar): Update to 4.0.3.
 2018-10-17 11:40:08 +03:00
Pierre Neidhardt 05f8943f04
gnu: emacs-helm-system-packages: Add recutils to inputs. 
* gnu/packages/emacs.scm (emacs-helm-system-packages)[inputs]: Use recutils.
 2018-10-17 10:37:35 +02:00
Efraim Flashner 15b283e712
gnu: streamlink: Update to 0.14.2. 
* gnu/packages/video.scm (streamlink): Update to 0.14.2.
[source]: Download from pypi.
 2018-10-17 11:24:18 +03:00
Efraim Flashner da39ff5898
gnu: boost-for-mysql: Remove unnecessary phase. 
* gnu/packages/boost.scm (boost-for-mysql)[arguments]: Remove custom
'provide-libboost_python phase. Add removed '/bin/sh' substitution.
 2018-10-17 10:55:26 +03:00
Maxim Cournoyer 24220e0f09
gnu: emacs-nodejs-repl: Update to 0.2.0. 
* gnu/packages/emacs.scm (emacs-nodejs-repl): Update to 0.2.0.
 2018-10-16 23:02:50 -04:00
Eric Bavier 6f1ce09d79
gnu: Add guix-minimal. 
* gnu/packages/guile.scm (guile-2.0.13): New variable.
* gnu/packages/package-management.scm (guix)[arguments]: Adjust 'wrap-program'
phase to handle "missing" inputs.
(guix-minimal): New variable.
 2018-10-16 17:09:15 -05:00
Eric Bavier c8e3651a82
gnu: guile2.0-guix: Fix build. 
* gnu/packages/gnupg.scm (guile2.0-gcrypt): New variable.
* gnu/packages/guile.scm (guile2.0-sqlite3): New variable.
* gnu/packages/package-management.scm (guile2.0-guix)[propagated-inputs]: Use
them.
 2018-10-16 17:09:15 -05:00
Leo Famulari 02d5ed4a27
gnu: GStreamer plugins: Update MP3 features for GStreamer 1.14. 
GStreamer moved all MPEG-1 audio (mp1, mp2, and mp3) decoders and encoders to
the group of "good" plugins in GStreamer 1.14.0. See the 'NEWS' file for more
information.

* gnu/packages/gstreamer.scm (gst-plugins-ugly)[inputs]: Remove lame, mpg123,
and twolame.
(gst-plugins-bad): Remove mpg123.
(gst-plugins-good): Add lame, mpg123, and twolame.
 2018-10-16 13:40:14 -04:00
Marius Bakke 56112a577c
gnu: perl-unicode-utf8: Disable tests on 32-bit systems. 
* gnu/packages/perl.scm (perl-unicode-utf8)[arguments]: New field.
 2018-10-16 16:49:08 +02:00
Marius Bakke 29e53b446c
gnu: libinput: Update to 1.12.1. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.12.1.
 2018-10-16 16:49:08 +02:00
Marius Bakke 08f535eb2d
gnu: chez: Adjust to zlib static output. 
* gnu/packages/chez.scm (chez-scheme)[inputs]: Add ZLIB:STATIC.
[arguments]: Reference libz.a from that instead of ZLIB.
 2018-10-16 16:49:08 +02:00
Rutger Helling 2d4a753a7c
gnu: xpra: Update to 2.4. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.
 2018-10-16 14:27:28 +02:00
Clément Lassieur f1376bfabe
gnu: emacs-exwm: Update to 0.20. 
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
 2018-10-16 11:10:04 +02:00
Clément Lassieur 503fe87098
gnu: emacs-xelb: Update to 0.16. 
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.16.
 2018-10-16 10:57:53 +02:00
Ludovic Courtès 532f92c8f3
gnu: guix: Update to f9a8fce. 
* gnu/packages/package-management.scm (guix): Update to f9a8fce.
 2018-10-15 23:54:20 +02:00
Efraim Flashner 1a2d8d06b5
* gnu: clang-runtime: Fix typo in patch name. 
This is a follow-up to 0627f93db6.

* gnu/packages/patches/libsantitizer-ustat-fix.patch: Rename to
gnu/packages/patches/libsanitizer-ustat-fix.patch.
* gnu/packages/llvm.scm (clang-runtime@3.7, clang-runtime@3.8,
clang-runtime@3.9)[patches]: Fix patch name.
 2018-10-15 21:51:26 +03:00
Efraim Flashner 0627f93db6
gnu: clang-runtime: Adapt for glibc@2.28. 
* gnu/packages/llvm.scm (clang-runtime@3.7, clang-runtime@3.8,
clang-runtime@3.9)[patches]: Add patch to work around removed ustat.h.
* gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-10-15 21:45:32 +03:00
Efraim Flashner 2ab321ca37
gnu: go@1.4: Add support for aarch64-linux. 
* gnu/packages/golang.scm (go@1.4)[arguments]: Build for armhf-linux
when building for aarch64-linux.
[supported-systems]: Add aarch64-linux.
 2018-10-15 14:21:07 +03:00
Rutger Helling 2c89b4b550
gnu: wine-staging: Update to 3.18. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.18.
* gnu/packages/wine.scm (wine-staging): Update to 3.18.
 2018-10-15 10:50:48 +02:00
Efraim Flashner b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux. 
* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
 2018-10-15 11:40:34 +03:00
Ludovic Courtès 68b0226b2a
gnu: gcal: Apply Gnulib fixes. 
* gnu/packages/gcal.scm (gcal)[modules, snippet]: New fields.
 2018-10-15 10:39:45 +02:00
Ludovic Courtès f1a9c6e581
gnu: lsof: Fix builds on glibc 2.28. 
* gnu/packages/lsof.scm (lsof)[arguments]: In 'disable-failing-tests',
add 'substitute*' use for "tests/LTlib.c".
 2018-10-15 10:31:24 +02:00
Tobias Geerinckx-Rice 2d5fa80e83
gnu: audacity: Update home page. 
* gnu/packages/audio.scm (audacity)[home-page]: Update.
 2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice e02013b7de
gnu: hexchat: Use HTTPS home page. 
* gnu/packages/messaging.scm (hexchat)[home-page]: Use HTTPS.
 2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice 4a147986a0
gnu: haveged: Teach the controversy. 
* gnu/packages/linux.scm (haveged)[description]: Suggest adding
additional entropy sources.
 2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice dfe05297f3
gnu: x265: Update to 2.9. 
* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 4702d45280
gnu: opensm: Update to 3.3.21. 
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.21.
[source]: Update tarball URI.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Rename 'doc' phase to 'install-doc'.
Omit AUTHORS and ChangeLog files. They are more than a decade old.
 2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 9cac043cc0
gnu: restic: Update to 0.9.3. 
* gnu/packages/backup.scm (restic): Update to 0.9.3.
[arguments]: Disable 'restic self-update'.
 2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 3a6e1fe8c8
gnu: perl-xml-feed: Update to 0.55. 
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.55.
 2018-10-15 06:19:36 +02:00
Maxim Cournoyer 66a9f08bb9
gnu: Add python-falcon-cors. 
* gnu/packages/python-web.scm (python-falcon-cors): New variable.
 2018-10-14 22:50:27 -04:00
Maxim Cournoyer bb840999c8
gnu: Add python-falcon. 
* gnu/packages/python-web.scm (python-falcon): New variable.
 2018-10-14 22:02:40 -04:00
Maxim Cournoyer 0731fc1ce7
gnu: python-mimeparse: Update to 1.6.0. 
* gnu/packages/python.scm (python-mimeparse): Update to 1.6.0.
[phases]: Enable tests with a custom check phase.
 2018-10-14 22:02:40 -04:00
Mark H Weaver 614f49c49a
gnu: linux-libre: Update to 4.18.14. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.14.
(%linux-libre-hash): Update hash.
 2018-10-14 19:27:46 -04:00
Mark H Weaver b0fe6b5785
gnu: linux-libre@4.14: Update to 4.14.76. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.76.
(%linux-libre-4.14-hash): Update hash.
 2018-10-14 19:13:56 -04:00
Mark H Weaver f266e82ad2
gnu: linux-libre@4.9: Update to 4.9.133. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.133.
 2018-10-14 19:09:24 -04:00
Mark H Weaver 2dd1bfcb58
gnu: linux-libre@4.4: Update to 4.4.161. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.161.
 2018-10-14 19:07:35 -04:00
Efraim Flashner c2397a8695
gnu: gdk-pixbuf: Increase test timeout. 
* gnu/packages/gtk.scm (gdk-pixbuf)[arguments]: Increase test timeout.
 2018-10-14 11:04:40 +03:00
Efraim Flashner 89f9df6cfd
gnu: icecat: Build with rust-1.24. 
* gnu/packages/gnuzilla.scm (icecat)[native-inputs]: Use the oldest
compatable rust over newer releases when building icecat.
 2018-10-14 09:42:54 +03:00
Brett Gilio 40f856fae8
gnu: csound: Update to 6.11.0. 
* gnu/packages/audio.scm (csound): Update to 6.11.0.
[home-page]: Change to "https://csound.com/".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-14 10:52:12 +08:00