Commit Graph

19658 Commits

Author SHA1 Message Date
Marius Bakke f9bd2051f0
gnu: qemu: Update to 2.10.1.
* gnu/packages/patches/qemu-CVE-2017-13711.patch,
  gnu/packages/patches/qemu-CVE-2017-14167.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.1.
[source](patches): Remove.
2017-10-03 23:22:54 +02:00
Marius Bakke 87a9c53b7c
gnu: imagemagick: Update to 6.9.9-17.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-17.
2017-10-03 23:22:54 +02:00
Marius Bakke 2a6e049a2f
gnu: p11-kit: Update to 0.23.9.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.9.
2017-10-03 23:22:54 +02:00
Marius Bakke 79ed92be6f
gnu: libsodium: Update to 1.0.15.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.15.
2017-10-03 23:22:54 +02:00
Cyril Roelandt 2299f5cd78
gnu: python-nose-timer: Add missing patch.
* gnu/packages/patches/python-nose-timer-drop-ordereddict.patch: New file.
* gnu/local.mk: Add it.
2017-10-03 22:41:25 +02:00
Julien Lepiller f282aa530b
gnu: Add heimdall.
* gnu/packages/flashing-tools.scm (heimdall): New variable.

Co-Authored-By: Danny Milosavljevic <dannym@scratchpost.org>
2017-10-03 21:44:10 +02:00
Julien Lepiller 500aac750e
gnu: Add java-osgi-service-packageadmin.
* gnu/packages/java.scm (java-osgi-service-packageadmin): New variable.
2017-10-03 21:39:21 +02:00
Julien Lepiller fb9c48b829
gnu: Add java-osgi-service-cm.
* gnu/packages/java.scm (java-osgi-service-cm): New variable.
2017-10-03 21:39:13 +02:00
Julien Lepiller 1884bb8198
gnu: Add java-osgi-util-tracker.
* gnu/packages/java.scm (java-osgi-util-tracker): New variable.
2017-10-03 21:39:10 +02:00
Julien Lepiller 291d3f22d6
gnu: Add java-osgi-service-resolver.
* gnu/packages/java.scm (java-osgi-service-resolver): New variable.
2017-10-03 21:39:08 +02:00
Julien Lepiller dd76d44b79
gnu: Add java-osgi-service-jdbc.
* gnu/packages/java.scm (java-osgi-service-jdbc): New variable.
2017-10-03 21:39:05 +02:00
Julien Lepiller 98c9f16c17
gnu: Add java-osgi-service-log.
* gnu/packages/java.scm (java-osgi-service-log): New variable.
2017-10-03 21:39:03 +02:00
Julien Lepiller dfd9154180
gnu: Add java-osgi-framework.
* gnu/packages/java.scm (java-osgi-framework): New variable.
2017-10-03 21:39:01 +02:00
Julien Lepiller a13acfbe5f
gnu: Add java-osgi-service-repository.
* gnu/packages/java.scm (java-osgi-service-repository): New variable.
2017-10-03 21:38:58 +02:00
Julien Lepiller 2b1fdb2b65
gnu: Add java-osgi-service-metatype-annotations.
* gnu/packages/java.scm (java-osgi-service-metatype-annotations): New
variable.
2017-10-03 21:38:56 +02:00
Julien Lepiller 27103135dd
gnu: Add java-osgi-util-promise.
* gnu/packages/java.scm (java-osgi-util-promise): New variable.
2017-10-03 21:38:54 +02:00
Julien Lepiller 0f0c52187b
gnu: Add java-osgi-util-function.
* gnu/packages/java.scm (java-osgi-util-function): New variable.
2017-10-03 21:38:51 +02:00
Julien Lepiller b784962d96
gnu: Add java-osgi-namespace-service.
* gnu/packages/java.scm (java-osgi-namespace-service): New variable.
2017-10-03 21:38:49 +02:00
Julien Lepiller f809c963c2
gnu: Add java-osgi-namespace-extender.
* gnu/packages/java.scm (java-osgi-namespace-extender): New variable.
2017-10-03 21:38:47 +02:00
Julien Lepiller c2b14516e8
gnu: Add java-osgi-namespace-contract.
* gnu/packages/java.scm (java-osgi-namespace-contract): New variable.
2017-10-03 21:38:44 +02:00
Julien Lepiller c304ce6aa1
gnu: Add java-osgi-resource.
* gnu/packages/java.scm (java-osgi-resource): New variable.
2017-10-03 21:38:42 +02:00
Julien Lepiller 999b5fb4d2
gnu: Add java-osgi-dto.
* gnu/packages/java.scm (java-osgi-dto): New variable.
2017-10-03 21:38:39 +02:00
Julien Lepiller 747c75746f
gnu: Add java-osgi-service-component-annotations.
* gnu/packages/java.scm (java-osgi-service-component-annotations): New
variable.
2017-10-03 21:38:37 +02:00
Julien Lepiller 3240ddbfb1
gnu: Add java-osgi-cmpn.
* gnu/packages/java.scm (java-osgi-cmpn): New variable.
2017-10-03 21:38:34 +02:00
Julien Lepiller 8e2f3e5e03
gnu: Add java-datanucleus-javax-persistence.
* gnu/packages/java.scm (java-datanucleus-javax-persistence): New
variable.
2017-10-03 21:38:32 +02:00
Julien Lepiller 30deadee1a
gnu: Add java-microemulator-cldc.
* gnu/packages/java.scm (java-microemulator-cldc): New variable.
2017-10-03 21:38:28 +02:00
Kei Kebreau 4d6801b735
gnu: graphicsmagick: Fix CVE-2017-14649.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-10-03 11:56:24 -04:00
Rutger Helling 3d7a15963e
gnu: qtox: Update to 1.12.0.
* gnu/packages/messaging.scm (qtox): Update to 1.12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:12:41 +02:00
Rutger Helling 0750cf7ebd
gnu: mgba: Update to 0.6.1.
* gnu/packages/games.scm (mgba): Update to 0.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:12:11 +02:00
Dave Love c971d9ef29
gnu: openmpi: Add "debug" output.
This is necessary for one mechanism for attaching parallel debuggers
and is also relevant for the runtime backtrace facility.

* gnu/packages/mpi.scm (openmpi)[outputs]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:11:19 +02:00
Dave Love fb99371972
gnu: Add scorep-openmpi.
* gnu/packages/profiling.scm (make-scorep): New function.
(scorep-openmpi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Dave Love a66408f8c0
gnu: Add cube.
* gnu/packages/profiling.scm(cube): New variable.
* gnu/packages/patches/cube-nocheck.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Dave Love 3c8d1f9492
gnu: Add opari2.
* gnu/packages/profiling.scm (opari2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Dave Love a6121c0a3e
gnu: Add otf2.
* gnu/packages/profiling.scm (otf2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Dave Love 6a3af24f06
gnu: Add papi.
* gnu/packages/profiling.scm: New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Oleg Pykhalov 65d98906b8
gnu: cflow: Fix preprocess option.
* gnu/packages/code.scm (cflow)[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Maxim Cournoyer 0ad03eae38
gnu: android: Add android-udev-rules package.
* gnu/packages/android.scm (android-udev-rules): Add package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:54 +02:00
Theodoros Foradis d109b1e85c
Update e-mail for Theodoros Foradis.
* .mailmap: Add entry.
* gnu/packages/aspell.scm: Replace theodoros.for@openmailbox.org with current address.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/electronics.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/fpga.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/uml.scm: Likewise.
* gnu/packages/wxwidgets.scm: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:54 +02:00
Leo Famulari df71c88c3a
gnu: Add pulsemixer.
* gnu/packages/pulseaudio.scm (pulsemixer): New variable.
2017-10-03 10:29:07 -04:00
Leo Famulari 1ba940b58b
gnu: vdirsyncer: Update to 0.16.3.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.3.
[native-inputs]: Add python-urllib3.
2017-10-03 10:29:07 -04:00
Roel Janssen 61ce0998e0
gnu: Add virtuoso-ose.
* gnu/packages/databases.scm (virtuoso-ose): New variable.
2017-10-03 15:36:05 +02:00
Cyril Roelandt 3ef85c1118
gnu: Add python-twine.
* gnu/packages/python.scm (python-twine, python2-twine): New variables.
2017-10-03 00:04:36 +02:00
Cyril Roelandt 78f46e65bd
gnu: Add python-pkginfo.
* gnu/packages/python.scm (python-pkginfo, python2-pkginfo): New variables.
2017-10-03 00:04:36 +02:00
Cyril Roelandt b84ef9e224
gnu: Add python-tqdm.
* gnu/packages/python.scm (python-tqdm, python2-tqdm): New variables.
2017-10-03 00:04:35 +02:00
Cyril Roelandt cf47e34e62
gnu: Update the propagated inputs of python-urllib3.
* gnu/packages/python.scm (python-urllib3, python2-urllib3): Update propagated
  inputs.
2017-10-03 00:04:34 +02:00
Cyril Roelandt 8e6ceb4737
gnu: Add python-nose-timer.
* gnu/packages/python.scm (python-nose-time, python2-nose-timer): New variables.
2017-10-03 00:04:33 +02:00
Cyril Roelandt 9bb7c05e3d
gnu: python-tox: Update to 2.8.1.
* gnu/packages/python.scm (python-tox): Update to 2.8.1.
2017-10-03 00:04:32 +02:00
Cyril Roelandt 74e9895f2d
gnu: Add python2-requests-toolbelt.
* gnu/packages/python.scm (python2-requests-toolbelt): New variable.
2017-10-03 00:04:32 +02:00
Cyril Roelandt 30d7207f2e
gnu: python-requests-toolbelt: Update to 0.8.0.
* gnu/packages/python.scm (python-requests-toolbelt): Udpate to 0.8.0.
2017-10-03 00:04:31 +02:00
Cyril Roelandt 8e483fb540
gnu: python-autopep8: Update to 1.3.2.
* gnu/packages/python.scm (python-autopep8): Update to 1.3.2.
2017-10-03 00:04:30 +02:00
Cyril Roelandt ab7f51fa34
gnu: Add python-pydiff.
* gnu/packages/python.scm (python-pydiff, python2-pydiff): New variables.
2017-10-03 00:04:29 +02:00
Efraim Flashner 76dd04be47
gnu: dnsmasq: Update to 2.78 [Security fixes].
This fixes CVE-2017-13704 and CVE-2017-1449[123456].

* gnu/packages/dns.scm (dnsmasq): Update to 2.78.
2017-10-02 20:32:31 +03:00
Ben Woodcroft 1960d4fdea
gnu: ruby-pry: Update to 0.11.1.
* gnu/packages/ruby.scm (ruby-pry): Update to 0.11.1.
[propagated-inputs]: Remove ruby-slop-3.
2017-10-02 22:14:17 +10:00
Ben Woodcroft c83550372a
gnu: ruby-method-source: Update to 0.9.0.
* gnu/packages/ruby.scm (ruby-method-source): Update to 0.9.0.
[arguments]: Use "spec" test target.
[native-inputs]: Remove ruby-bacon, add ruby-rspec.
2017-10-02 22:14:17 +10:00
Efraim Flashner 08d97842e1
gnu: autoconf-archive: Update to 2017.09.28.
* gnu/packages/autotools.scm (autoconf-archive): Update to 2017.09.28.
2017-10-02 11:55:06 +03:00
Efraim Flashner 99e28bbf8a
gnu: tilda: Use glib-or-gtk build system.
* gnu/packages/terminals.scm (tilda)[build-system]: Switch to
glib-or-gtk build system.
[inputs]: Remove glib:bin, gtk+.
2017-10-02 10:34:25 +03:00
Mohammed Sadiq a49d3e3775
gnu: gnome-calendar: Update to 3.26.1.
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.26.1.
[build-system]: Move to meson-build-system.
[arguments]: Enable gtk+ for meson-build-system, disable tests.
[native-inputs]: Add gettext, gtk+-bin and glib-bin, remove intltool.
[inputs]: Remove bdb and desktop-file-utils.
[description]: Rephrase and add week view.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-10-01 20:43:17 -04:00
Tobias Geerinckx-Rice 0e42d239ec
gnu: tor: Update to 0.3.1.7.
* gnu/packages/tor.scm (tor): Update to 0.3.1.7.
2017-10-02 00:17:31 +02:00
Tobias Geerinckx-Rice ce7393f0b4
gnu: knot: update to 2.6.0.
* gnu/packages/dns.scm (knot): Update to 2.6.0.
2017-10-02 00:00:25 +02:00
Tobias Geerinckx-Rice e153362e4a
gnu: youtube-dl: Update to 2017.10.01.
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.01.
2017-10-02 00:00:24 +02:00
Theodoros Foradis 710cc1a402
gnu: Add libngspice and ngspice.
* gnu/packages/engineering.scm (libngspice, ngspice): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-01 23:55:42 +02:00
Kyle Meyer 0ef1c22307
gnu: Add emacs-writeroom.
* gnu/packages/emacs.scm (emacs-writeroom): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 11:56:50 +01:00
Kyle Meyer 32e23abae0
gnu: emacs-visual-fill-column: Update to 1.11.
* gnu/packages/emacs.scm (emacs-visual-fill-column): Update to 1.11.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 11:53:47 +01:00
Feng Shu 88e6086e60
gnu: emacs-cyberpunk-theme: Update to 1.19.
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): Update to 1.19.
2017-10-01 11:56:09 +02:00
ng0 6a5f7af6fc
gnu: gnunet: Use 'gnutls/dane' as input.
This switches the used GnuTLS to the one recommended
by the GNUnet Documentation (Chapter "Installation Handbook",
Section "Generic installation instructions") where a specific
order of dependency installation is required.  In this
order libunbound is installed first, then GnuTLS, then libgnurl,
followed by libmicrohttpd.

* gnu/packages/gnunet.scm (gnunet)[inputs]: Replace gnutls with 'gnutls/dane'.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 10:50:37 +01:00
ng0 1472f63002
gnu: libmicrohttpd: Use 'gnutls/dane' as input.
This switches the used GnuTLS to the one recommended
by the GNUnet Documentation (Chapter "Installation Handbook",
Section "Generic installation instructions") where a specific
order of dependency installation is required.  In this
order libunbound is installed first, then GnuTLS, then libgnurl,
followed by libmicrohttpd.

* gnu/packages/gnunet.scm (libmicrohttpd)[inputs]: Replace gnutls with
  'gnutls/dane'.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 10:50:37 +01:00
ng0 fd67e3a22f
gnu: gnurl: Use 'gnutls/dane' as input.
This switches the used GnuTLS to the one recommended
by the GNUnet Documentation (Chapter "Installation Handbook",
Section "Generic installation instructions") where a specific
order of dependency installation is required.  In this
order libunbound is installed first, then GnuTLS, then libgnurl,
followed by libmicrohttpd.

* gnu/packages/gnunet.scm (gnurl)[inputs]: Replace gnutls with 'gnutls/dane'.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 10:50:37 +01:00
ng0 5b9aa107d2
gnu: gnutls: Add 'gnutls-dane'.
* gnu/packages/tls.scm (gnutls/dane): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 10:50:36 +01:00
Thomas Danckaert 2003090526
gnu: libreoffice: Update to 5.3.6.1.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.6.1.
2017-10-01 10:50:31 +02:00
Feng Shu 7493306f82
gnu: Add emacs-pyim.
* gnu/packages/emacs.scm (emacs-pyim): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 09:45:34 +01:00
Feng Shu 9f3b27a267
gnu: Add emacs-pos-tip.
* gnu/packages/emacs.scm (emacs-pos-tip): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 09:45:34 +01:00
Feng Shu 0fa8a932ed
gnu: Add emacs-pyim-basedict.
* gnu/packages/emacs.scm (emacs-pyim-basedict): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 09:45:34 +01:00
Feng Shu 65fff6a32d
gnu: Add emacs-cnfonts.
* gnu/packages/emacs.scm (emacs-cnfonts): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-01 09:45:34 +01:00
ng0 58b2835d03
gnu: pybitmessage: Update to 0.6.2.
* gnu/packages/messaging.scm (pybitmessage): Update to 0.6.2.
[build-system]: Change to python-build-system.
[arguments]: Remove "fix-makefile" and "wrap" phases.
[inputs]: Rename to...
[propagated-inputs]: ...this. Add "python2-msgpack" and "python2-pythondialog".
[inputs]: Remove "sqlite" and "qt-4". Move "openssl" ...
[native-inputs]: ...here. Remove "pkg-config".

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-30 15:22:25 +01:00
Ricardo Wurmus 0083a39f17
gnu: guitarix: Update to 0.35.6.
* gnu/packages/audio.scm (guitarix): Update to 0.35.6.
2017-09-30 14:53:21 +02:00
Ricardo Wurmus fba1cadea8
gnu: samplv1: Update to 0.8.4.
* gnu/packages/music.scm (samplv1): Update to 0.8.4.
2017-09-30 14:53:21 +02:00
Ricardo Wurmus f7a99e27f9
gnu: drumkv1: Update to 0.8.4.
* gnu/packages/music.scm (drumkv1): Update to 0.8.4.
2017-09-30 14:53:21 +02:00
Ricardo Wurmus 9cb928ad33
gnu: synthv1: Update to 0.8.4.
* gnu/packages/music.scm (synthv1): Update to 0.8.4.
2017-09-30 14:53:20 +02:00
Christopher Baines afcbb02057
gnu: Add ruby-es-dump-restore.
* gnu/packages/databases.scm (es-dump-restore): New variable.
2017-09-30 11:46:10 +01:00
Christopher Baines cb6bc5df1c
gnu: Add ruby-rubyzip.
* gnu/packages/ruby.scm (ruby-rubyzip): New variable.

Co-authored by Ben Woodcroft <donttrustben@gmail.com>.
2017-09-30 11:46:09 +01:00
Christopher Baines 268643b94a
gnu: Add ruby-progress_bar.
* gnu/packages/ruby.scm (ruby-progress_bar): New variable.
2017-09-30 11:46:09 +01:00
Christopher Baines 823ed0972f
gnu: Add ruby-highline.
* gnu/packages/ruby.scm (ruby-highline): New variable.
2017-09-30 11:46:09 +01:00
Ben Woodcroft 9b4c8e1b72
gnu: Add ruby-code-statistics.
* gnu/packages/ruby.scm (ruby-code-statistics): New variable.
2017-09-30 11:46:09 +01:00
Christopher Baines cef87ed6be
gnu: Add ruby-options.
* gnu/packages/ruby.scm (ruby-options): New variable.
2017-09-30 11:46:09 +01:00
Christopher Baines 9a97e7ce29
gnu: Add ruby-multi-json.
* gnu/packages/ruby.scm (ruby-multi-json): New variable.
2017-09-30 11:46:09 +01:00
Christopher Baines 1c8e6fd30f
gnu: Add ruby-httpclient.
* gnu/packages/ruby.scm (ruby-httpclient): New variable.
2017-09-30 11:46:06 +01:00
ng0 6e79949f46
gnu: Add xautomation.
* gnu/packages/xdisorg.scm (xautomation): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-09-29 18:00:11 -04:00
Tobias Geerinckx-Rice 16818c4856
gnu: libfilezilla: Update to 0.11.0.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.11.0.
2017-09-29 21:51:51 +02:00
Tobias Geerinckx-Rice 6fc35b2179
gnu: knot: Update to 2.5.5.
* gnu/packages/dns.scm (knot): Update to 2.5.5.
2017-09-29 21:51:50 +02:00
Julien Lepiller 41a1ac1b22
gnu: php: Update to 7.1.10.
* gnu/packages/php.scm (php): Update to 7.1.10.
2017-09-29 20:05:46 +02:00
Efraim Flashner dee9a2628c
gnu: openvpn: Update to 2.4.4.
* gnu/packages/vpn.scm (openvpn): Update to 2.4.4.
[inputs]: Add lz4.
2017-09-29 15:23:54 +03:00
Mark H Weaver 464a2889c9
gnu: icecat: Add more fixes from upstream mozilla-esr52.
Includes fixes for CVE-2017-7793, CVE-2017-7805, CVE-2017-7819, CVE-2017-7823,
and the remaining 3 out of 8 changesets for CVE-2017-7810.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2017-09-29 05:37:10 -04:00
Mark H Weaver 3fd2f86a3f
gnu: icecat: Rename patches to reflect CVE assignments.
Document the fact that we include fixes for CVE-2017-7814 and 5 out of 8
changesets for CVE-2017-7810.

* gnu/packages/gnuzilla.scm (icecat)[source]: Rename some patches to reflect
CVE assignments.
2017-09-29 05:37:04 -04:00
Ludovic Courtès 1501cb55e9
gnu: cuirass: Update to latest snapshot.
This fixes mishandling of 'GIT_SSL_CAINFO'.

* gnu/packages/ci.scm (cuirass): Update to commit 9cfea9f.
[native-search-paths]: New field.
2017-09-29 10:01:02 +02:00
Danny Milosavljevic bc01c89171
gnu: tclxml: Propagate tcllib.
* gnu/packages/tcl.scm (tclxml): Propagate tcllib.
2017-09-29 08:16:23 +02:00
Mark H Weaver 94c6865737
gnu: linux-libre: Update to 4.13.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.4.
(%linux-libre-hash): Update hash.
2017-09-28 23:51:54 -04:00
Mark H Weaver e604c02847
gnu: linux-libre@4.9: Update to 4.9.52.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.52.
2017-09-28 23:51:22 -04:00
Mark H Weaver 00b0d0e611
gnu: linux-libre@4.4: Update to 4.4.89.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.89.
2017-09-28 23:50:39 -04:00
Nicolas Goaziou 2ca147bc88
gnu: wireshark: Update to 2.4.1.
* gnu/packages/networking.scm (wireshark): Update to 2.4.1.
2017-09-28 22:41:52 +02:00
Ricardo Wurmus e90456b94c
gnu: r-ddalpha: Update to 1.3.1.
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.1.
[propagated-inputs]: Add r-sfsmisc.
[native-inputs]: Add gfortran.
2017-09-28 22:00:45 +02:00
Ricardo Wurmus 7ef9e146e9
gnu: r-lava: Update to 1.5.1.
* gnu/packages/cran.scm (r-lava): Update to 1.5.1.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus d311292b20
gnu: r-rcpp: Update to 0.12.13.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.13.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 6048986c89
gnu: r-lme4: Update to 1.1-14.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 26cd4194ef
gnu: r-doparallel: Update to 1.0.11.
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 7147d8f7ad
gnu: r-checkmate: Update to 1.8.4.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 2c49184e2c
gnu: r-backports: Update to 1.1.1.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
2017-09-28 22:00:43 +02:00
Maxim Cournoyer c651cbad1e
gnu: eudev: Update to 3.2.4 and generate manpages.
* gnu/packages/linux.scm (eudev)[version]: Bump to 3.2.4.
[uri]: Download the release from Github, which contains the script to generate
the manpages from source.
[file-name]: Add a file-name field to the origin record, per linter recommendation.
[sha256]: Adjust accordingly.
[phases]: Add a bootstrap phase to regenerate the manpages.
[configure-flags]: Add the "--enable-manpages" option, required to install the
manpages.
[native-inputs]: Add autoconf, automake and libtool for the bootstrap phase.
Add python-wrapper to run a test script that was previously skipped.
Add docbook-xml, docbook-xsl, libxml2 and libxslt for manpage generation.
2017-09-28 20:26:39 +02:00
Thomas Danckaert 80c3f4d6c0
gnu: python-ipython: Update to 5.3.0.
* gnu/packages/python.scm (python-ipython, python2-ipython): Update to 5.3.0.
2017-09-28 20:24:25 +02:00
Thomas Danckaert 025b196d9b
gnu: python-numpy: Update to 1.13.1.
* gnu/packages/python.scm (python-numpy, python2-numpy): Update to 1.13.1.
[source]: Download the zip release from pypi instead of a git snapshot.
[native-inputs]: Add unzip.
[arguments]: Set SHELL environment variable.

Co-authored by Leo Famulari <leo@famulari.name>
2017-09-28 20:24:25 +02:00
Stefan Reichör 18a26f1c13
gnu: Add footswitch.
I have tested the built footswitch tool with my foot switch. It works as expected.
Is accessibility.scm the correct location for this tool?

* gnu/packages/accessibility.scm (footswitch): New variable.
2017-09-28 20:24:17 +02:00
Ricardo Wurmus 1344deb937
gnu: r-minimal: Update to 3.4.2.
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
2017-09-28 20:21:18 +02:00
ng0 ac7134612a
gnu: Add cadaver.
* gnu/packages/web.scm (cadaver): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-09-28 18:43:23 +03:00
ng0 8fc559dcc5
gnu: Add emacs-jinja2-mode.
* gnu/packages/emacs.scm (emacs-jinja2-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-09-28 18:43:23 +03:00
Oleg Pykhalov 69b498a162
gnu: Add emacs-sr-speedbar.
* gnu/packages/emacs.scm (emacs-sr-speedbar): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-09-28 18:43:22 +03:00
Alex Kost 41342e89ff
gnu: lirc: Update to 0.10.1.
* gnu/packages/lirc.scm (lirc): Update to 0.10.1.
[arguments]: Use "--enable-devinput" configure flag.
2017-09-28 18:43:22 +03:00
Alex Kost 9c074e89b1
gnu: dunst: Update to 1.2.0.
* gnu/packages/dunst.scm (dunst): Update to 1.2.0.
[inputs]: Update: remove 'libxext' and 'libxft', add 'gtk' and 'libxrandr'.
[home-page]: Update for the new location.
2017-09-28 18:41:17 +03:00
Alex Kost 1210046d76
gnu: emacs-pdf-tools: Update to 0.80.
* gnu/packages/emacs.scm (emacs-pdf-tools): Update to 0.80.
[propagated-inputs]: Add 'emacs-tablist' as it is the new dependency.
2017-09-28 18:41:16 +03:00
Alex Kost 060348d2a4
gnu: Add emacs-tablist.
* gnu/packages/emacs.scm (emacs-tablist): New variable.
2017-09-28 18:41:16 +03:00
Theodoros Foradis a6edcfaf78
gnu: Add asco.
* gnu/packages/engineering.scm (asco): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-28 15:00:02 +02:00
Theodoros Foradis ea1aa4525e
gnu: openocd: Update to 0.10.0
* gnu/packages/embedded.scm (openocd): Update to 0.10.0.
[arguments] <configure-flags>: Add "--enable-sysfsgpio" flag.
Remove "--enable-oocd_trace" flag.
[arguments] <phases>: Add phase "change-udev-group".
Add phase "install-udev-rules".
* gnu/packages/patches/openocd-nrf52.patch: Modify to apply on 0.10.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-28 15:00:02 +02:00
Theodoros Foradis 2da8865a70
gnu: libjaylink: Update to commit 699b700.
* gnu/packages/embedded.scm (libjaylink): Update to commit 699b700.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-28 15:00:02 +02:00
Ricardo Wurmus 0423131156
gnu: qtmultimedia: Build gstreamer backend.
* gnu/packages/qt.scm (qtmultimedia)[inputs]: Add gstreamer and
gst-plugins-base.
[arguments]: Replace configure phase to pass extra arguments to qmake.
2017-09-28 13:26:07 +02:00
Ricardo Wurmus 50cb3c8dd6
gnu: Add dino.
* gnu/packages/messaging.scm (dino): New variable.
2017-09-28 13:10:45 +02:00
Efraim Flashner 523ecbbbed
gnu: libical: Fix libdir install path.
Reported by sadiq on IRC.

* gnu/packages/calendar.scm (libical)[arguments]: Remove configure flag
adding /lib64 to rpath, add flag to force libdir to /lib.
2017-09-28 12:26:50 +03:00
Ludovic Courtès 4cb87d63e1
gnu: libgc: Add 'libgc-back-pointers' variant.
* gnu/packages/bdw-gc.scm (libgc/back-pointers): New variable.
2017-09-28 00:13:10 +02:00
Mohammed Sadiq 42ecb96e99
gnu: Add font-rachana.
* gnu/packages/fonts.scm (font-rachana): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-28 00:13:10 +02:00
Mohammed Sadiq 57b14665c3
gnu: Add gnome-todo.
* gnu/packages/gnome.scm (gnome-todo): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-28 00:13:10 +02:00
Julien Lepiller 408091d5a5
gnu: Add ocaml-camomile.
* gnu/packages/ocaml.scm (ocaml-camomile): New variable.
2017-09-27 21:26:24 +02:00
Julien Lepiller cd1562ef8e
gnu: Add bap.
* gnu/packages/ocaml.scm (bap): New variable.
2017-09-27 21:26:21 +02:00
Julien Lepiller fc3d70ae54
gnu: Add ocaml-piqi.
* gnu/packages/ocaml.scm (ocaml-piqi): New variable.
2017-09-27 21:26:19 +02:00
Julien Lepiller 8a238180fd
gnu: Add ocaml-graph.
* gnu/packages/ocaml.scm (ocaml-graph): New variable.
* gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-27 21:26:16 +02:00
Julien Lepiller 88b1533c27
gnu: Add ocaml-uuidm.
* gnu/packages/ocaml.scm (ocaml-uuidm): New variable.
2017-09-27 21:26:14 +02:00
Julien Lepiller 9c5dbbf0ce
gnu: Add ocaml-piqilib.
* gnu/packages/ocaml.scm (ocaml-piqilib): New variable.
2017-09-27 21:26:12 +02:00
Julien Lepiller b5c0217c71
gnu: Add ocaml-optcomp.
* gnu/packages/ocaml.scm (ocaml-optcomp): New variable.
2017-09-27 21:26:10 +02:00
Julien Lepiller 6134aeb9ab
gnu: Add ocaml-easy-format.
* gnu/packages/ocaml.scm (ocaml-easy-format): New variable.
2017-09-27 21:26:08 +02:00
Julien Lepiller 3dabefeef4
gnu: Add ocaml-uri.
* gnu/packages/ocaml.scm (ocaml-uri): New variable.
2017-09-27 21:26:05 +02:00
Julien Lepiller bf7bc0d6bb
gnu: Add ocaml-ezjsonm.
* gnu/packages/ocaml.scm (ocaml-ezjsonm): New variable.
2017-09-27 21:26:00 +02:00
Marius Bakke 9f1d112d12
Merge branch 'master' into staging 2017-09-27 21:14:27 +02:00
Marius Bakke cb1e0cfc2f
gnu: samba: Install manual pages.
* gnu/packages/samba.scm (samba)[arguments]<#:phases>: Add
'locate-docbook-stylesheets' phase.
[native-inputs]: Add DOCBOOK-XSL and LIBXSLT.
2017-09-27 21:06:01 +02:00
Marius Bakke eb52d637f5
gnu: tklib: Fix typo.
This is a follow-up to commit 1966481fe3.

* gnu/packages/tcl.scm (tklib)[description]: Fix Texinfo markup.
2017-09-27 21:05:47 +02:00
Marius Bakke 21e5eb4e7b
gnu: potrace: Update to 1.15 [fixes CVE-2017-12067].
* gnu/packages/fontutils.scm (potrace): Update to 1.15.
2017-09-27 21:02:56 +02:00
Marius Bakke 29591fc4c4
gnu: e2fsprogs: Update to 1.43.6.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.6.
2017-09-27 21:02:56 +02:00
Marius Bakke a0604c2183
gnu: powertop: Update to 2.9.
* gnu/packages/linux.scm (powertop): Update to 2.9.
[source]: Adjust URI.
2017-09-27 21:02:56 +02:00
Marius Bakke 2b2c24ed42
gnu: lftp: Update to 4.8.2.
* gnu/packages/ftp.scm (lftp): Update to 4.8.2.
2017-09-27 21:02:56 +02:00
Marius Bakke b1e4c0fa51
gnu: pulseview: Build with modular Qt.
* gnu/packages/electronics.scm (pulseview)[inputs]: Remove QT.  Add QTBASE and QTSVG.
2017-09-27 21:02:56 +02:00
Maxim Cournoyer 958be7a423
gnu: tklib: Add missing closing brace.
Fixes <http://bugs.gnu.org/28624>.
Reported by Jelle Licht <wordempire@gmail.com>

* gnu/packages/tcl.scm (tklib): Add closing brace.
2017-09-27 20:57:54 +02:00
Efraim Flashner 31ec522835
gnu: lilypond: Fix fontforge detection.
* gnu/packages/music.scm (lilypond)[arguments]: Adjust fontforge
detection algorithm to allow for SOURCE_DATE_EPOCH in fontforge's build.
2017-09-27 10:09:00 +03:00
Tobias Geerinckx-Rice a9925374b0
gnu: git: Update to 2.14.2.
* gnu/packages/version-control.scm (git): Update to 2.14.2.
2017-09-26 22:36:15 +02:00
Tobias Geerinckx-Rice e2937a5551
gnu: btrfs-progs: Update to 4.13.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.13.1.
[inputs]: Add zstd.
2017-09-26 22:36:14 +02:00
Danny Milosavljevic 1966481fe3
gnu: Add tklib.
* gnu/packages/tcl.scm (tklib): New variable.
2017-09-26 19:51:47 +02:00
Jan Nieuwenhuizen a928ed4740
gnu: cuirass: Update development snapshot.
* gnu/packages/ci.scm (cuirass): Update to commit 87ad259.
2017-09-26 18:15:27 +02:00
Leo Famulari 373cda6ac6
gnu: libunwind: Update to 1.2.1.
* gnu/packages/libunwind.scm (libunwind): Upate to 1.2.1.
[source]: Remove 'libunwind-CVE-2015-3239.patch'.
* gnu/packages/patches/libunwind-CVE-2015-3239.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-26 11:42:06 -04:00
Arun Isaac 8fd92e034b
gnu: Add uim, uim-gtk and uim-qt.
* gnu/packages/xorg.scm (uim, uim-gtk, uim-qt): New variables.
2017-09-26 19:02:39 +05:30
ng0 8384499c04
gnu: Add gpa.
* gnu/packages/gnupg.scm (gpa): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-26 10:37:18 +02:00
ng0 b36524c1b8
gnu: Add lxqt-build-tools.
* gnu/packages/lxqt.scm (lxqt-build-tools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-26 10:28:16 +02:00
Ludovic Courtès 4f80158db0
gnu: libgtop: Update to 2.38.0.
* gnu/packages/gnome.scm (libgtop): Update to 2.38.0.
2017-09-26 00:35:06 +02:00
Dave Love 8ddf20b286
gnu: lm-sensors: Add "lib" output.
* gnu/packages/linux.scm (lm-sensors)[outputs]: Add "lib".
[arguments]: Fix up make flags.
(xsensors)[inputs]: Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-26 00:35:06 +02:00
Leo Famulari 66660960ba
gnu: certbot, python-acme: Update to 0.18.2.
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.18.2.
* gnu/packages/patches/python-acme-dont-use-openssl-rand.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-25 03:27:24 -04:00
Marius Bakke edd38aa898
gnu: i3-wm: Update to 4.14.1.
* gnu/packages/wm.scm (i3-wm): Update to 4.14.1.
2017-09-25 00:13:07 +02:00
Marius Bakke 859620e51d
gnu: ruby: Fix build failures after updating to 2.4.2.
* gnu/packages/ruby.scm (gem-directory): New procedure.
(ruby-ansi, ruby-ae)[arguments]: Use it to determine gem install directory
instead of relying on the ruby (patch) version.
2017-09-24 20:28:10 +02:00
Marius Bakke 4f27a33371
gnu: Fix syntax errors introduced by dc1d3cdef7.
* gnu/packages/mp3.scm (libmad)[arguments]: Adjust syntax and indentation.
* gnu/packages/rdf.scm (lrdf)[arguments]: Adjust phase order.
* gnu/packages/audio.scm (vamp)[arguments]: Remove stray character.
(zita-convolver)[arguments]: Adjust parsens and indentation.
(clalsadrv)[arguments]: Remove stray 'modify-phases'.
2017-09-24 20:27:58 +02:00
Efraim Flashner 3140844e33
gnu: openntpd: Update to 6.2p2.
* gnu/packages/ntp.scm (openntpd): Update to 6.2p2.
2017-09-24 20:40:58 +03:00
Efraim Flashner c80f837afd
gnu: fontforge: Update to 20170731.
* gnu/packages/fontutils.scm (fontforge): Update to 20170731.
[source]: Remove patch, remove snippet.
[arguments]: Enable tests. Remove phase to build showttf.
[inputs]: Use python-wrapper instead of python.
[home-page]: Update to new home page.
* gnu/packages/patches/fontforge-svg-modtime.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-24 20:22:00 +03:00
Marius Bakke ffcff27272
Merge branch 'master' into staging 2017-09-24 19:18:35 +02:00
Marius Bakke 030030f441
gnu: imagemagick: Update to 6.9.9-15.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-15.
2017-09-24 19:01:17 +02:00
Marius Bakke 832fe93d24
gnu: lvm2: Update to 2.02.174.
* gnu/packages/linux.scm (lvm2): Update to 2.02.174.
2017-09-24 19:01:16 +02:00
Roel Janssen 6aab6c27c7
gnu: Add emacs-olivetti.
* gnu/packages/emacs.scm (emacs-olivetti): New variable.
2017-09-25 16:41:57 +02:00
Efraim Flashner 58816c3d3d
gnu: python-cython: Update to 0.27.
* gnu/packages/python.scm (python-cython): Update to 0.27.
2017-09-24 16:41:30 +03:00
Ricardo Wurmus 07ad172a24
gnu: ibus-libpinyin: Update to 1.9.2.
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.9.2.
[inputs]: Replace "python-2" with "python" and python2-pyxdg with
python-pyxdg.
2017-09-24 12:43:24 +02:00
Ricardo Wurmus 3943f5ab5a
gnu: python-pyxdg: Disable failing test.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Disable theme
validation test.
2017-09-24 12:43:24 +02:00
Ricardo Wurmus b9e9ef44ff
gnu: libpinyin: Update to 2.1.0.
* gnu/packages/ibus.scm (libpinyin): Update to 2.1.0.
2017-09-24 12:43:24 +02:00
Ricardo Wurmus 91316f31d4
gnu: r-glmnet: Update to 2.0-13.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
2017-09-24 11:36:17 +02:00
Ricardo Wurmus d9400ee46a
gnu: r-segmented: Update to 0.5-2.2.
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
2017-09-24 11:36:17 +02:00
Ricardo Wurmus 29457c43bf
gnu: r-mgcv: Update to 1.8-22.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
2017-09-24 11:36:17 +02:00
Efraim Flashner 830383cbaa
gnu: parallel: Update to 20170922.
* gnu/packages/parallel.scm (parallel): Update to 20170922.
2017-09-24 12:09:31 +03:00
Ricardo Wurmus 95e654ae63
gnu: Add cl-yale-haskell.
* gnu/packages/haskell.scm (cl-yale-haskell): New variable.
2017-09-24 08:49:27 +02:00
Ricardo Wurmus 3765f4e6bf
gnu: qtractor: Update to 0.8.4.
* gnu/packages/music.scm (qtractor): Update to 0.8.4.
2017-09-24 08:49:12 +02:00
Roel Janssen 6baf1b7205
gnu: teckit: Update to 2.5.7.
* gnu/packages/fontutils.scm (teckit): Update to 2.5.7.

Signed-off-by: Roel Janssen <roel@gnu.org>
2017-09-24 00:26:40 +02:00
Tobias Geerinckx-Rice ca5915a6e5
gnu: youtube-dl: Update to 2017.09.24.
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.24.
2017-09-23 20:50:23 +02:00
Tobias Geerinckx-Rice faccaa8916
gnu: weechat: Update to 1.9.1 [security fix].
* gnu/packages/irc.scm (weechat): Update to 1.9.1.
2017-09-23 18:38:35 +02:00
Mohammed Sadiq 60e2a9ae0f
gnu: Add gnome-clocks.
* gnu/packages/gnome.scm (gnome-clocks): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:24 +02:00
Mohammed Sadiq 0ec171ecb4
gnu: Add gsound.
* gnu/packages/gnome.scm (gsound): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:24 +02:00
Mohammed Sadiq 1d3fcf944a
gnu: libgweather: Enable vala support.
* gnu/packages/gnome.scm (libgweather)[native-inputs]: Add vala.
(libgweather)[arguments]: Install vala bindings into out.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:24 +02:00
Dave Love 8a001de8b7
gnu: Add ibutils.
* gnu/packages/fabric-management.scm (ibutils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:24 +02:00
Dave Love 3f82586aa3
gnu: Add infiniband-diags.
* gnu/packages/fabric-management.scm (infiniband-diags): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:24 +02:00
Dave Love 468d2a2a00
gnu: Add opensm.
* gnu/packages/fabric-management.scm: New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:24 +02:00
ng0 a35e00336b
gnu: gnurl: Update to 7.55.1-4.
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1-4.
(native-inputs): Remove 'autoconf' and 'automake'.
(arguments)[phases]: Remove 'autoconf' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-23 18:35:23 +02:00
Tobias Geerinckx-Rice a0b80a5718
gnu: python-unidecode: Fix typo in description.
* gnu/packages/python.scm (python-unidecode)[description]: Fix typo.
2017-09-23 14:12:52 +02:00
Tobias Geerinckx-Rice c37f58b75a
gnu: python-unidecode: Update to 0.04.21.
* gnu/packages/python.scm (python-unidecode): Update to 0.04.21.
2017-09-23 14:12:51 +02:00
Ben Woodcroft 8c864901b6
gnu: proteinortho: Update to 5.16b.
* gnu/packages/bioinformatics.scm (proteinortho): Update to 5.16b.
2017-09-23 18:10:14 +10:00
Feng Shu a4314af5e6
gnu: you-get: Update to 0.4.915.
* gnu/packages/video.scm (you-get): Update to 0.4.915.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-09-22 19:23:26 +02:00
Rutger Helling 6e83592aff
gnu: xpra: Update to 2.1.2.
* gnu/packages/xorg.scm (xpra): Update to 2.1.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-09-22 19:23:26 +02:00
Marius Bakke 0193812a3d
gnu: bitcoin-core: Build with modular Qt.
* gnu/packages/finance.scm (bitcoin-core)[native-inputs]: Add QTTOOLS.
[inputs]: Remove QT.  Add QTBASE.
[arguments]: Specify paths to "lrelease" and "lupdate" in #:configure-flags.
2017-09-22 19:07:57 +02:00
Marius Bakke 12ae25db45
gnu: bitcoin-core: Update to 0.15.0.1.
* gnu/packages/finance.scm (bitcoin-core): Update to 0.15.0.1.
2017-09-22 19:04:21 +02:00
Marius Bakke ee130d0c5f
gnu: libraw: Update to 0.18.5 [fixes CVE-2017-13735, CVE-2017-14265].
* gnu/packages/photo.scm (libraw): Update to 0.18.5.
2017-09-22 19:04:21 +02:00
Marius Bakke bee98a9f85
gnu: libsodium: Update to 1.0.14.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.14.
[source, home-page]: Use HTTPS.
2017-09-22 19:04:21 +02:00
Ludovic Courtès 60e36bff1f
gnu: r-adaptivesparsity: Add dependency on Armadillo.
Fixes a link error whereby -larmadillo would not be found.

* gnu/packages/machine-learning.scm (r-adaptivesparsity)[inputs]: New
field.
2017-09-22 18:40:57 +02:00
Arun Isaac c0959cc952
gnu: openttd-opengfx: Disable parallel build.
* gnu/packages/games.scm (openttd-opengfx)[arguments]: Set #:parallel-build?
to #f.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-09-22 08:04:33 -04:00
Arun Isaac 857b2f53bd
gnu: openttd: Include openttd-openmsx and openttd-opensfx.
* gnu/packages/games.scm (openttd-opengfx)[arguments]: Change installation
directory from /share/openttd/baseset/opengfx to
/share/games/openttd/baseset/opengfx.
(openttd-engine)[arguments]: Support #:configure-flags keyword argument in
'configure' phase.
(openttd)[inputs]: Add timidity++.
[native-inputs]: Add openttd-openmsx and openttd-opensfx.
[arguments]: Configure with timidity as MIDI player. Install data from
openttd-openmsx and openttd-opensfx.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-09-22 08:04:33 -04:00
Arun Isaac 823e121848
gnu: Add openttd-openmsx.
* gnu/packages/games.scm (openttd-openmsx): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-09-22 08:04:33 -04:00
Arun Isaac c17b079043
gnu: Add openttd-opensfx.
* gnu/packages/games.scm (openttd-opensfx): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-09-22 08:04:32 -04:00
Arun Isaac 3c399e9b60
gnu: Add catcodec.
* gnu/packages/game-development.scm (catcodec): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-09-22 08:04:24 -04:00
Ricardo Wurmus 9fc513ad10
gnu: Use xxd instead of vim.
* gnu/packages/audio.scm (faust-2)[native-inputs]: Replace vim with xxd.
* gnu/packages/avr.scm (microscheme)[native-inputs]: Likewise.
* gnu/packages/bioinformatics.scm (star)[native-inputs]: Likewise.
* gnu/packages/disk.scm (dosfstools)[native-inputs]: Likewise.
* gnu/packages/package-management.scm (diffoscope)[inputs]: Likewise.
2017-09-22 12:21:09 +02:00
Ricardo Wurmus b0a1d7ef7d
gnu: Add xxd.
* gnu/packages/vim.scm (xxd): New variable.
2017-09-22 12:21:09 +02:00
Mark H Weaver 0920205391
gnu: linux-libre: Update to 4.13.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.3.
(%linux-libre-hash): Update hash.
2017-09-21 18:56:56 -04:00
Mark H Weaver e689192df5
gnu: linux-libre@4.9: Update to 4.9.51.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.51.
2017-09-21 18:56:25 -04:00
Mark H Weaver b9ebf1da7a
gnu: linux-libre@4.1: Update to 4.1.44.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.44.
2017-09-21 18:55:36 -04:00
Marius Bakke 9b0215deb9
gnu: libuv: Update to 1.14.1.
* gnu/packages/libevent.scm (libuv): Update to 1.14.1.
[source]: Download from dist.libuv.org.
2017-09-21 21:10:28 +02:00
Marius Bakke e0afc09de4
gnu: curl: Update to 7.55.1.
* gnu/packages/patches/curl-bounds-check.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/curl.scm (curl): Update to 7.55.1.
[replacement]: Remove field.
[source]: Use '.xz' tarball.
(curl-7.55.0): Remove variable.
2017-09-21 20:53:15 +02:00
Marius Bakke efa0ba499e
Merge branch 'master' into staging 2017-09-21 20:34:49 +02:00
Marius Bakke e2a95f8b16
gnu: vim: Update to 8.0.1130.
* gnu/packages/vim.scm (vim): Update to 8.0.1130.
2017-09-21 20:34:09 +02:00
Marius Bakke 595dcd48a9
gnu: bdb: Update to 6.2.32.
* gnu/packages/databases.scm (bdb): Update to 6.2.32.
2017-09-21 20:33:56 +02:00
Marius Bakke dfe0bac420
gnu: lout: Revert changes from dc1d3cdef7.
This caused `make` to error out like this:

ERROR: In procedure primitive-load-path:
ERROR: In procedure read_inner_expression: gnu/packages/lout.scm:31:12: unexpected ")"

* gnu/packages/lout.scm (lout)[arguments]: Don't use 'modify-phases'.
2017-09-21 20:26:23 +02:00
Marius Bakke abe97a58be
gnu: dlib: Update to 19.7.
* gnu/packages/machine-learning.scm (dlib): Update to 19.7.
[arguments]: Add #:configure-flags.  Remove redundant CXXFLAGS from 'check' phase.
2017-09-21 20:08:02 +02:00
Ricardo Wurmus 0cdb6ab499
gnu: emacs: Update to 25.3.
* gnu/packages/patches/emacs-unsafe-enriched-mode-translations.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/emacs.scm (emacs): Update to 25.3.
[source]: Remove obsolete patch.
2017-09-21 16:46:20 +02:00
Kei Kebreau dc1d3cdef7
gnu: Use 'modify-phases' syntax.
* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal,
wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use
'modify-phases' syntax.
* gnu/packages/algebra.scm (arb)[arguments]: Likewise.
* gnu/packages/apr.scm (apr-util)[arguments]: Likewise.
* gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano,
lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound,
zita-convolver, zita-alsa-pcmi)[arguments]: Likewise.
* gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express,
flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise.
* gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise.
* gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise.
* gnu/packages/compression.scm (sharutils)[arguments]: Likewise.
* gnu/packages/conky.scm (conky)[arguments]: Likewise.
* gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise.
* gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise.
* gnu/packages/display-managers.scm (slim)[arguments]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise.
* gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise.
* gnu/packages/engineering.scm (pcb)[arguments]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise.
* gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise.
* gnu/packages/fltk.scm (fltk)[arguments]: Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise.
* gnu/packages/gd.scm (perl-gd)[arguments]: Likewise.
* gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise.
* gnu/packages/glib.scm (glibmm)[arguments]: Likewise.
* gnu/packages/gl.scm (glew)[arguments]: Likewise.
* gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs,
libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise.
* gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise.
* gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise.
* gnu/packages/graphics.scm (agg)[arguments]: Likewise.
* gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present,
python2-pycairo)[arguments]: Likewise.
* gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise.
* gnu/packages/hugs.scm (hugs)[arguments]: Likewise.
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal)
[arguments]: Likewise.
* gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise.
* gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static,
lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools)
[arguments]: Likewise.
* gnu/packages/lisp.scm (ccl)[arguments]: Likewise.
* gnu/packages/lout.scm (lout)[arguments]: Likewise.
* gnu/packages/lua.scm (luajit)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise.
* gnu/packages/mail.scm (exim)[arguments]: Likewise.
* gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise.
* gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun)
[arguments]: Likewise.
* gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise.
* gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise.
* gnu/packages/music.scm (solfege)[arguments]: Likewise.
* gnu/packages/noweb.scm (noweb)[arguments]: Likewise.
* gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]:
Likewise.
* gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu,
zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise.
* gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]:
Likewise.
* gnu/packages/photo.scm (gphoto2)[arguments]: Likewise.
* gnu/packages/popt.scm (popt)[arguments]: Likewise.
* gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]:
Likewise.
* gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise.
* gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy,
python-sqlalchemy, python-docopt)[arguments]: Likewise.
* gnu/packages/rdf.scm (lrdf)[arguments]: Likewise.
* gnu/packages/regex.scm (tre)[arguments]: Likewise.
* gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise.
* gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise.
* gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise.
* gnu/packages/scheme.scm (racket)[arguments]: Likewise.
* gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise.
* gnu/packages/serveez.scm (serveez)[arguments]: Likewise.
* gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise.
* gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise.
* gnu/packages/tcl.scm (expect)[arguments]: Likewise.
* gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise.
* gnu/packages/textutils.scm (recode, libgtextutils)[arguments]:
Likewise.
* gnu/packages/time.scm (time)[arguments]: Likewise.
* gnu/packages/tor.scm (privoxy)[arguments]: Likewise.
* gnu/packages/uucp.scm (uucp)[arguments]: Likewise.
* gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise.
* gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise.
* gnu/packages/web.scm (tinyproxy)[arguments]: Likewise.
* gnu/packages/wicd.scm (wicd)[arguments]: Likewise.
* gnu/packages/wm.scm (bspwm)[arguments]: Likewise.
* gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise.
* gnu/packages/xfce.scm (xfconf)[arguments]: Likewise.
* gnu/packages/xfig.scm (transfig)[arguments]: Likewise.
* gnu/packages/xorg.scm (imake)[arguments]: Likewise.
2017-09-20 20:58:04 -04:00
Stefan Reichör 80d9941c95
gnu: Add vcsh.
* gnu/packages/version-control.scm (vcsh): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-20 23:02:28 +02:00
Paul Garlick a836e9f509
gnu: openfoam: Fix typo in Note.
* gnu/packages/simulation.scm (openfoam): Put capital 'D' in 'pitzDaily'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-20 23:02:28 +02:00
Ludovic Courtès f2b96b3a1c
gnu: Add network-manager-openvpn.
* gnu/packages/gnome.scm (network-manager-openvpn): New variable.
2017-09-20 23:02:28 +02:00
Marius Bakke a9bd50e352
gnu: bluez: Remove leftover patch.
This is a follow-up to commit 164fccea7e.

* gnu/packages/patches/bluez-CVE-2017-1000250.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-20 20:50:00 +02:00
Marius Bakke 3d695e6ae4
gnu: cups-filters: Update to 1.17.7.
* gnu/packages/cups.scm (cups-filters): Update to 1.17.7.
2017-09-20 20:20:19 +02:00
Marius Bakke df7effa299
gnu: poppler: Update to 0.59.0.
* gnu/packages/pdf.scm (poppler): Update to 0.59.0.
2017-09-20 20:00:07 +02:00
Marius Bakke cb6392698a
gnu: mesa: Update to 17.2.1.
* gnu/packages/gl.scm (mesa): Update to 17.2.1.
[inputs]: Add WAYLAND-PROTOCOLS.
* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Adjust context.
2017-09-20 19:55:34 +02:00
Marius Bakke 7c9b87600b
gnu: harfbuzz: Update to 1.5.1.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.5.1.
2017-09-20 19:47:15 +02:00
Tobias Geerinckx-Rice 3b5870aac3
gnu: virt-manager: Update to 1.4.3.
* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.3.
2017-09-20 19:29:28 +02:00
Tobias Geerinckx-Rice e8d5e32fbf
gnu: gnuastro: Update to 0.4.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.4.
2017-09-20 19:29:28 +02:00
Tobias Geerinckx-Rice d4442eaf22
gnu: wcslib: Use HTTPS home page.
* gnu/packages/astronomy.scm (wcslib)[home-page]: Use HTTPS.
2017-09-20 19:28:59 +02:00
Tobias Geerinckx-Rice 7651a4b2ec
gnu: wcslib: Update to 5.17.
* gnu/packages/astronomy.scm (wcslib): Update to 5.17.
2017-09-20 19:28:59 +02:00
Marius Bakke 6345cefa7f
gnu: gtk+: Update to 3.22.21.
* gnu/packages/gtk.scm (gtk+): Update to 3.22.21.
2017-09-20 19:16:54 +02:00
Marius Bakke a87f425ca4
gnu: ruby: Remove graft for 2.4.2.
* gnu/packages/ruby.scm (ruby): Update to 2.4.2.
[replacement]: Remove field.
(ruby-2.4.2): Remove variable.
2017-09-20 19:13:25 +02:00
Marius Bakke b093be236e
gnu: gd: Remove graft for 2.2.5.
* gnu/packages/gd.scm (gd): Update to 2.2.5.
[source]: Remove obsolete patches.
[replacement]: Remove field.
(gd-2.2.5): Remove variable.
* gnu/packages/patches/gd-fix-gd2-read-test.patch,
gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove patches.
* gnu/packages/php.scm (php)[inputs]: Replace GD-2.2.5 with GD.
2017-09-20 19:06:38 +02:00
Marius Bakke 171bcdf7ba
gnu: gdk-pixbuf: Remove graft for 2.36.10.
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.10.
[replacement]: Remove field.
(gdk-pixbuf+svg)[replacement]: Likewise.
(gdk-pixbuf-2.36.10, gdk-pixbuf+svg-2.36.10): Remove variables.
2017-09-20 18:57:39 +02:00
Marius Bakke 164fccea7e
gnu: bluez: Update to 5.47.
* gnu/packages/linux.scm (bluez): Update to 5.47.
[replacement]: Remove field.
(bluez/fixed): Remove variable.
2017-09-20 18:56:03 +02:00
Marius Bakke 58366883f2
Merge branch 'master' into staging 2017-09-20 18:49:26 +02:00
Marius Bakke 9a1c4a981b
gnu: btrfs-progs: Install bash completions.
* gnu/packages/linux.scm (btrfs-progs)[arguments]: Add
'install-bash-completion' phase.
2017-09-20 17:15:37 +02:00
Marius Bakke ad0f92d028
gnu: python-pyjwt: Update to 1.5.3.
* gnu/packages/python.scm (python-pyjwt): Update to 1.5.3.
2017-09-20 17:06:14 +02:00
Marius Bakke 15d507dbee
gnu: samba: Update to 4.6.8.
* gnu/packages/samba.scm (samba): Update to 4.6.8.
2017-09-20 17:03:08 +02:00
Marius Bakke 40f1694778
gnu: nss, nss-certs: Update to 3.33.
* gnu/packages/gnuzilla.scm (nss): Update to 3.33.
* gnu/packages/certs.scm (nss-certs): Likewise.
2017-09-20 16:58:04 +02:00
Marius Bakke ad7a73a9d7
gnu: nspr: Update to 4.17.
* gnu/packages/gnuzilla.scm (nspr): Update to 4.17.
2017-09-20 16:57:40 +02:00
Marius Bakke 1c9c81cfda
gnu: gnupg: Update to 2.2.1.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.1.
2017-09-20 16:57:16 +02:00
Andy Wingo c68c201fdd
gnu: xorg-server: Prefer intel driver only for older GPUs.
* gnu/packages/xorg.scm (xorg-server): Add patch to only prefer the intel
  driver for older Intel GPUs.

Signed-off-by: Andy Wingo <wingo@igalia.com>
2017-09-20 15:40:31 +02:00
Andy Wingo 60871ffdb8
gnu: xf86-video-intel: Update to latest Git.
* gnu/packages/xorg.scm (xf86-video-intel): Update to latest Git.

Signed-off-by: Andy Wingo <wingo@igalia.com>
2017-09-20 15:40:31 +02:00
Andy Wingo 3511c78020
gnu: Add cheese.
* gnu/packages/gnome.scm (cheese): New public variable.

Signed-off-by: Andy Wingo <wingo@igalia.com>
2017-09-20 15:40:31 +02:00
Andy Wingo d831d49db9
gnu: Add gnome-video-effects.
* gnu/packages/gnome.scm (gnome-video-effects): New public variable.

Signed-off-by: Andy Wingo <wingo@igalia.com>
2017-09-20 15:40:13 +02:00
Oleg Pykhalov 46f5ae0b35
gnu: emacs-skewer-mode: Include html and js files.
* gnu/packages/emacs.scm (emacs-skewer-mode): Include html and js files.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-09-19 19:46:31 +03:00
Efraim Flashner ce133cb737
gnu: efl: Update to 1.20.4.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.4.
2017-09-19 19:30:37 +03:00
Ludovic Courtès 3daea4f12b
gnu: cuirass: Update development snapshot.
* gnu/packages/ci.scm (cuirass): Update to commit 87ad259.
2017-09-19 12:19:15 +02:00
Eric Bavier d209ce434f
gnu: qutebrowser: Update to 0.11.0.
* gnu/packages/web-browsers.scm (qutebrowser): Update to 0.11.0.
2017-09-19 00:03:40 -05:00
Marius Bakke 2cb396ee7b
gnu: gstreamer: Update to 1.12.3.
* gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base, gst-plugins-good,
gst-plugins-bad, gst-plugins-ugly, gst-libav, python-gst): Update to 1.12.3.
2017-09-18 22:47:47 +02:00
Marius Bakke ad472397bc
gnu: gdk-pixbuf: Replace with 2.36.10.
Fixes CVE-2017-2862, CVE-2017-2870 and CVE-2017-6311.

* gnu/packages/gtk.scm (gdk-pixbuf, gdk-pixbuf+svg)[replacement]: New field.
(gdk-pixbuf-2.36.10, gdk-pixbuf+svg-2.36.10): New variables.
2017-09-18 22:27:40 +02:00
Marius Bakke dc4ffa6766
gnu: freexl: Update to 1.0.4 [fixes CVE-2017-2923 and CVE-2017-2924].
* gnu/packages/xml.scm (freexl): Update to 1.0.4.
2017-09-18 22:27:40 +02:00
Efraim Flashner bbcfd80a20
gnu: newsbeuter: Fix CVE-2017-14500.
* gnu/packages/syndication.scm (newsbeuter)[source]: Add patch.
* gnu/packages/patches/newsbeuter-CVE-2017-14500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-18 22:38:56 +03:00
Tobias Geerinckx-Rice f53e4ada03
gnu: tor: Update to 0.3.0.11 [fixes CVE-2017-0380].
* gnu/packages/tor.scm (tor): Update to 0.3.0.11.
2017-09-18 21:06:42 +02:00
Tobias Geerinckx-Rice d5b0a8e50a
gnu: youtube-dl: Update to 2017.09.15.
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.15.
2017-09-18 17:31:44 +02:00
Ludovic Courtès e14ab0ad07
gnu: httpd: Patch "options bleed" [fixes CVE-2017-9798].
* gnu/packages/patches/httpd-CVE-2017-9798.patch: New file.
* gnu/packages/web.scm (httpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-18 15:44:52 +02:00
Ricardo Wurmus ebfd6a718a
gnu: r-rcas: Add missing inputs.
* gnu/packages/bioinformatics.scm (r-rcas)[propagated-inputs]: Add r-pbapply.
2017-09-18 14:23:03 +02:00
Ricardo Wurmus 65eb1c4a28
gnu: r-energy: Update to 1.7-2.
* gnu/packages/cran.scm (r-energy): Update to 1.7-2.
2017-09-18 14:23:03 +02:00
Ricardo Wurmus 2c67f96b1b
gnu: r-glmnet: Update to 2.0-12.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
2017-09-18 14:23:03 +02:00
Ricardo Wurmus 0b2fc9836b
gnu: r-lambda-r: Update to 1.2.
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
2017-09-18 14:23:03 +02:00
Ricardo Wurmus 9f14fffea6
gnu: r-gridextra: Update to 2.3.
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus 37c6a738f3
gnu: r-dplyr: Update to 0.7.3.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus b0c8cba485
gnu: r-crayon: Update to 1.3.4.
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus ea008095c3
gnu: r-svglite: Update to 1.2.1.
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus 7904531e5b
gnu: r-mgcv: Update to 1.8-21.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus d82937fbe0
gnu: r-rcas: Update to 1.3.4.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.4.
2017-09-18 11:33:26 +02:00
Ricardo Wurmus d9c65e5a9c
gnu: r-caret: Update to 6.0-77.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
2017-09-18 11:33:26 +02:00
Ricardo Wurmus 9272144a88
gnu: r-rstudioapi: Update to 0.7.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
2017-09-18 11:33:26 +02:00
Ricardo Wurmus 0dc3b4d41e
gnu: r-openssl: Update to 0.9.7.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus ba4527ab94
gnu: Add r-recipes.
* gnu/packages/cran.scm (r-recipes): New variable.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus 6c3d42d613
gnu: Add r-ipred.
* gnu/packages/cran.scm (r-ipred): New variable.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus 649cf27c01
gnu: Add r-rcpproll.
* gnu/packages/cran.scm (r-rcpproll): New variable.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus 5a87093fd5
gnu: Add r-gower.
* gnu/packages/cran.scm (r-gower): New variable.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus f57b883ea3
gnu: Add r-ddalpha.
* gnu/packages/cran.scm (r-ddalpha): New variable.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus 1b663184eb
gnu: Add r-timedate.
* gnu/packages/cran.scm (r-timedate): New variable.
2017-09-18 11:33:24 +02:00
Ricardo Wurmus b561f5636f
gnu: Add r-dimred.
* gnu/packages/cran.scm (r-dimred): New variable.
2017-09-18 11:33:24 +02:00
Ricardo Wurmus 9dd707f03b
gnu: Add r-prodlim.
* gnu/packages/cran.scm (r-prodlim): New variable.
2017-09-18 11:33:24 +02:00
Ricardo Wurmus d26b7c1bfc
gnu: Add r-drr.
* gnu/packages/cran.scm (r-drr): New variable.
2017-09-18 11:33:24 +02:00
Ricardo Wurmus 797e1dfbf2
gnu: Add r-lava.
* gnu/packages/cran.scm (r-lava): New variable.
2017-09-18 11:33:24 +02:00
Ricardo Wurmus f97ce81575
gnu: Add r-cvst.
* gnu/packages/cran.scm (r-cvst): New variable.
2017-09-18 11:33:24 +02:00
ng0 851cb6dd39
gnu: hicolor-icon-theme: Update to 0.17.
* gnu/packages/gnome.scm (hicolor-icon-theme): Update to 0.17.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-18 06:26:56 +01:00
Efraim Flashner 9a6f5bbc0f
gnu: blender: Update to 2.79.
* gnu/packages/graphics.scm (blender): Update to 2.79.
[source]: Use https.
[home-page]: Same.
2017-09-18 06:36:38 +03:00
Nicolas Goaziou 9c1b37928d
gnu: emacs-org: Update to 20170917.
* gnu/packages/emacs.scm (emacs-org): Update to 20170917, aka Org 9.1.1.
2017-09-17 23:32:29 +02:00
Efraim Flashner ce27857f71
gnu: binutils: Fix security issues.
* gnu/packages/base.scm (binutils)[replacement]: New field.
(binutils/fixed): New variable.
* gnu/packages/commencement.scm (binutils-boot0, binutils-final): Use
'package/inherit' to correctly use replacement binutils.
2017-09-17 22:45:21 +03:00
Marius Bakke 881006b65c
gnu: certbot: Fix build with python-pyopenssl >= 17.3.0.
* gnu/packages/patches/python-acme-dont-use-openssl-rand.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/tls.scm (python-acme)[source]: Use it.
2017-09-17 18:50:00 +02:00
Marius Bakke 0c19c0f272
gnu: python-pyopenssl: Update to 17.3.0.
* gnu/packages/python.scm (python-pyopenssl): Update to 17.3.0.
2017-09-17 17:14:13 +02:00
Marius Bakke f2cc1b3136
gnu: lftp: Update to 4.8.1.
* gnu/packages/ftp.scm (lftp): Update to 4.8.1.
2017-09-17 17:14:13 +02:00
Marius Bakke 4c7ad0bc6c
gnu: jasper: Update to 2.0.14.
* gnu/packages/image.scm (jasper): Update to 2.0.14.
2017-09-17 17:14:12 +02:00
Marius Bakke 84023d2fa4
gnu: xf86-video-ati: Update to 7.10.0.
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.10.0.
2017-09-17 17:14:12 +02:00
Marius Bakke 6b192837e0
gnu: xf86-input-libinput: Update to 0.26.0.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.26.0.
2017-09-17 17:14:12 +02:00
Marius Bakke 273027da47
gnu: strace: Update to 4.19.
* gnu/packages/linux.scm (strace): Update to 4.19.
2017-09-17 15:15:45 +02:00
Ben Woodcroft 86805c1ba3
gnu: ruby-2.2: Update to 2.2.8. Fix CVE-2017-{0898,10784,14033,14064}.
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.8.
[source]: Remove patch.
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-17 20:08:48 +10:00
Ben Woodcroft c351e8cea5
gnu: ruby-2.3: Update to 2.3.5. Fix CVE-2017-{0898,10784,14033,14064}.
* gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.5.
[source]: Remove patch.
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-17 20:08:48 +10:00
Ben Woodcroft 312e8a9993
ruby: Update replacement to 2.4.2. Fix CVE-2017-{0898,10784,14033,14064}.
* gnu/packages/ruby.scm (ruby): Update replacement to 2.4.2.
(ruby-2.4.1): Rename to ...
(ruby-2.4.2): ... this.
[source]: Remove patches.
* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-09-17 20:08:48 +10:00
Efraim Flashner 0329f6f76c
gnu: efl: Hardcode libcurl path.
* gnu/packages/enlightenment.scm (efl)[arguments]: Hardcode the location
of libcurl.so.
2017-09-17 13:01:50 +03:00
Efraim Flashner b6598237f2
gnu: openfoam: Fix typo.
* gnu/packages/simulation.scm (openfoam)[description]: Add a period to
the end of the sentence.
2017-09-17 10:14:17 +03:00
Efraim Flashner 5fb17ed92e
gnu: owncloud-client: Update to 2.3.3.
* gnu/packages/sync.scm (owncloud-client): Update to 2.3.3.
2017-09-17 10:14:14 +03:00
rennes ea8afaf3f1
gnu: bluefish: Update to 2.2.10.
* gnu/packages/gnome.scm (bluefish): Update to 2.2.10.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-09-17 14:13:24 +08:00
Ben Woodcroft da1f7a9e16
gnu: python-orator: Move to (gnu packages databases).
* gnu/packages/python.scm: Remove (gnu packages time) import.
(python-orator, python2-orator): Move from here ...
* gnu/packages/databases.scm: ... to here.
2017-09-17 11:07:46 +10:00
Ben Woodcroft 77e5c37032
gnu: python-orator: Update to 0.9.7.
* gnu/packages/python.scm (python-orator, python2-orator): Update to 0.9.7.
[arguments]: Enable tests.  Loosen dependency requirements.
[propagated-inputs]: Remove python-arrow.  Add python-backpack,
python-pendulum, python-pygments, python-six.
(python2-orator)[propagated-inputs]: Also remove python2-ipaddress.
2017-09-17 11:05:33 +10:00
Ben Woodcroft 00c7888241
gnu: python-pygments: Update to 2.2.0.
* gnu/packages/databases.scm (python-pygments): Update to 2.2.0.
2017-09-17 11:05:29 +10:00
Ben Woodcroft 5eebe8dcf7
gnu: python-cleo: Update to 0.6.1.
* gnu/packages/databases.scm (python-cleo): Update to 0.6.1.
[native-inputs]: Add python-pytest-mock.
[propagated-inputs]: Add python-backpack, python-pastel.  Remove
python-psutil.
2017-09-17 11:05:17 +10:00
Ben Woodcroft f76d56d286
gnu: Add python-pastel.
* gnu/packages/graphics.scm (python-pastel): New variable.
2017-09-17 11:04:14 +10:00
Ben Woodcroft 963926bc78
gnu: python-pyaml: Update to 17.7.2.
* gnu/packages/databases.scm (python-pyaml): Update to 17.7.2.
2017-09-17 11:03:51 +10:00
Ben Woodcroft 89c3eaaa98
gnu: Add python-pendulum.
* gnu/packages/time.scm (python-pendulum): New variable.
2017-09-17 11:03:46 +10:00
Ben Woodcroft 5d20e1ecaf
gnu: Add python-pytzdata.
* gnu/packages/time.scm (python-pytzdata): New variable.
2017-09-17 11:02:23 +10:00
Ben Woodcroft 04fb4516f4
gnu: Add python-backpack.
* gnu/packages/python.scm (python-backpack): New variable.
2017-09-17 11:00:56 +10:00
Ludovic Courtès 4db733e77d
gnu: Add hunspell-dict-fr{,moderne,reforme1990,toutesvariantes}.
* gnu/packages/libreoffice.scm (dicollecte-french-dictionary): New
procedure.
(define-french-dictionary): New macro.
(hunspell-dict-fr-classique)
(hunspell-dict-fr-moderne)
(hunspell-dict-fr-réforme-1990)
(hunspell-dict-fr-toutes-variantes): New variables.
2017-09-16 23:27:38 +02:00
Ludovic Courtès 31daf8931b
gnu: hunspell: Specify 'DICPATH' variable.
* gnu/packages/libreoffice.scm (hunspell)[native-search-paths]: New
variable.
2017-09-16 23:27:38 +02:00
Tobias Geerinckx-Rice 1d704c89d6
gnu: man-pages: Update to 4.13.
* gnu/packages/man.scm (man-pages): Update to 4.13.
2017-09-16 18:49:34 +02:00
Peter Mikkelsen dab666cd8d
gnu: Add meson-for-build.
* gnu/packages/build-tools.scm (meson-for-build): New variable.
* gnu/packages/patches/meson-for-build-rpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-16 00:03:53 +02:00
Peter Mikkelsen 67f8ba118e
gnu: meson: Update to 0.42.0.
* gnu/packages/build-tools.scm (meson): Update to 0.42.0.
  [propagated-inputs]: Add python.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-16 00:03:53 +02:00
Oleg Pykhalov 2175a42750
gnu: emacs-markdown-mode: Update to 2.3.
* gnu/packages/emacs.scm (emacs-markdown-mode): Update to 2.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-15 22:16:28 +01:00
Mark H Weaver a54bf725fc
gnu: webkitgtk: Update to 2.18.0.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.0.
[arguments]: Add -DUSE_GSTREAMER_GL=OFF to configure-flags.
[inputs]: Add libtasn1.
2017-09-15 13:12:38 -04:00
Paul Garlick 8f21aa22bf
gnu: Add openfoam.
*gnu/packages/patches/openfoam-4.1-cleanup.patch: New file
*gnu/packages/simulation.scm: New file
*gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-15 18:31:53 +02:00
Maxim Cournoyer 66e5570037
gnu: emacs-emms: Fix metadata retrieval for MP3 and FLAC files.
* gnu/packages/emacs.scm (emacs-emms): Reference find, mpg321 and metaflac by
their complete file path.
[inputs]: Add flac.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-15 18:31:53 +02:00
Stefan Reichör 24d158136f
gnu: Add python-schedule.
* gnu/packages/python.scm (python-schedule, python2-schedule): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-15 18:31:53 +02:00
Stefan Reichör 893f9d240a
gnu: Add pydf.
* gnu/packages/disk.scm (pydf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-15 18:31:53 +02:00
Efraim Flashner 56bf42fb40
gnu: libzip: Fix building on 32-bit architectures.
* gnu/packages/compression.scm (libzip)[arguments]: New field, add phase
to skip tests which are known to have issues on 32-bit architectures.
2017-09-15 15:19:42 +03:00
Mark H Weaver daca2ec4bb
gnu: linux-libre: Update to 4.13.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.2.
(%linux-libre-hash): Update hash.
(linux-libre, linux-libre-arm-generic): Remove patch.
2017-09-15 00:31:15 -04:00
Mark H Weaver c2ab0f8950
gnu: linux-libre@4.9: Update to 4.9.50.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.50.  Remove patch.
2017-09-15 00:30:21 -04:00
Mark H Weaver d22a843f57
gnu: linux-libre@4.4: Update to 4.4.88.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.88.  Remove patch.
2017-09-15 00:29:23 -04:00
Efraim Flashner 2206bd340b
gnu: Add gnucobol.
* gnu/packages/cobol.scm (gnucobol): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-09-15 06:36:21 +03:00
Efraim Flashner 14728ab78f
gnu: Update default gcc-objc and gcc-objc++.
* gnu/packages/gcc.scm (gcc-objc, gcc-objc++): Update default to 5.
2017-09-15 06:36:19 +03:00
Efraim Flashner e05f8d2fb3
gnu: Add gcc-objc++@7.
* gnu/packages/gcc.scm (gcc-objc++@7): New variable.
2017-09-15 06:36:17 +03:00
Efraim Flashner ce9afe2b3b
gnu: Add gcc-objc@7.
* gnu/packages/gcc.scm (gcc-objc@7): New variable.
2017-09-15 06:36:15 +03:00
Efraim Flashner 7a7c630856
gnu: Add gcc-objc++@6.
* gnu/packages/gcc.scm (gcc-objc++@6): New variable.
2017-09-15 06:36:12 +03:00
Efraim Flashner 4072c10bee
gnu: Add gcc-objc@6.
* gnu/packages/gcc.scm (gcc-objc@6): New variable.
2017-09-15 06:36:07 +03:00
Efraim Flashner ed8cdab870
gnu: Add gcc-objc++@5.
* gnu/packages/gcc.scm (gcc-objc++@5): New variable.
2017-09-15 06:36:04 +03:00
Efraim Flashner f51d01e1c3
gnu: Add gcc-objc@5.
* gnu/packages/gcc.scm (gcc-obj@5): New variable.
2017-09-15 06:36:01 +03:00
Kei Kebreau db7f7eb8ca
gnu: graphicsmagick: Fix CVE-2017-{11403,14103}.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-14 09:23:19 -04:00
ng0 c61794cf45
gnu: Add cpputest.
* gnu/packages/check.scm (cpputest): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-14 14:07:25 +02:00
Stefan Reichör 205441eb0e
gnu: Add stgit.
* gnu/packages/version-control.scm (stgit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-14 14:07:25 +02:00
R H 6fcf8c2d70
gnu: mpv: Update to 0.27.0.
* gnu/packages/video.scm (mpv): Update to 0.27.0.
2017-09-14 14:07:25 +02:00
Peter Mikkelsen 194b4e7d65
gnu: Add godot.
* gnu/packages/game-development.scm (godot): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-14 14:07:25 +02:00
Efraim Flashner 4b052c6a4d
gnu: sudo: Update to 1.8.21p2.
* gnu/packages/admin.scm (sudo): Update to 1.8.21p2.
2017-09-14 09:50:04 +03:00
Eric Bavier eb28a777b5
gnu: Add John the Ripper.
* gnu/packages/password-utils.scm (john-the-ripper-jumbo): New variable.
2017-09-13 22:07:21 -05:00
Arun Isaac aa90375afe
gnu: Add os-prober.
* gnu/packages/bootloaders.scm (os-prober): New variable.
2017-09-14 04:35:15 +05:30
Christopher Baines 909dcf5b46
gnu: Add ikiwiki.
* gnu/packages/web.scm (ikiwiki): New variable.
2017-09-13 18:19:31 +01:00
Christopher Baines f0539b66fe
gnu: Add perl-cgi-session.
* gnu/packages/web.scm (perl-cgi-session): New variable.
2017-09-13 18:19:31 +01:00
Christopher Baines 86bd64b613
gnu: Add perl-yaml-libyaml.
* gnu/packages/perl.scm (perl-yaml-libyaml): New variable.
2017-09-13 18:19:31 +01:00
Christopher Baines 4f0ee1b4df
gnu: Add perl-html-scrubber.
* gnu/packages/web.scm (perl-html-scrubber): New variable.
2017-09-13 18:19:30 +01:00
Christopher Baines 7d1f9c91e6
gnu: Add perl-test-eol.
* gnu/packages/perl.scm (perl-test-eol): New variable.
2017-09-13 18:19:30 +01:00
Christopher Baines 88002553ae
gnu: Add perl-test-notabs.
* gnu/packages/perl.scm (perl-test-notabs): New variable.
2017-09-13 18:19:30 +01:00
Christopher Baines 3d74955842
gnu: Add perl-test-memory-cycle.
* gnu/packages/perl.scm (perl-test-memory-cycle): New variable.
2017-09-13 18:19:30 +01:00
Christopher Baines b4387d868b
gnu: Add perl-devel-cycle.
* gnu/packages/perl.scm (perl-devel-cycle): New variable.
2017-09-13 18:19:30 +01:00
Christopher Baines d5b50202d7
gnu: Add perl-test-cpan-meta.
* gnu/packages/perl.scm (perl-test-cpan-meta): New variable.
2017-09-13 18:19:29 +01:00
Christopher Baines 19d81cf7dc
gnu: Add perl-test-cpan-meta-json.
* gnu/packages/perl.scm (perl-test-cpan-meta-json): New variable.
2017-09-13 18:19:29 +01:00
Christopher Baines 9d46919f9c
gnu: Add perl-text-markdown-discount.
* gnu/packages/markdown.scm (perl-text-markdown-discount): New variable.
* gnu/packages/patches/perl-text-markdown-discount-use-system-markdown.patch:
  New file.
2017-09-13 18:19:29 +01:00
Christopher Baines 31d3a7c729
gnu: Add discount.
This is required by perl-text-markdown-discount, which is required by ikiwiki.

* gnu/packages/markdown.scm (discount) New variable.
2017-09-13 18:19:29 +01:00
Mark H Weaver 921bb359ba
gnu: linux-libre@4.9: Fix hash.
The linux-libre-4.9.49 tarball on the distribution site was repacked using a
non-deterministic process, thus changing the tarball hash, although the
contents of the files in the tarball were not changed.

* gnu/packages/linux.scm (linux-libre-4.9): Update hash.
2017-09-13 12:55:14 -04:00
Mark H Weaver be2b2dff21
gnu: linux-libre: Fix CVE-2017-1000251.
* gnu/packages/linux.scm (linux-libre, linux-libre-4.9)
(linux-libre-4.4, linux-libre-arm-generic): Add patch.
2017-09-13 12:52:50 -04:00
Efraim Flashner ad057b79dd
gnu: xorriso: Update to 1.4.8.
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.8.
2017-09-13 18:46:44 +03:00
Mark H Weaver 27236a4348
gnu: bluez: Add replacement to fix CVE-2017-1000250.
* gnu/packages/patches/bluez-CVE-2017-1000250.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (bluez)[replacement]: New field.
(bluez/fixed): New variable.
2017-09-13 10:43:03 -04:00
Efraim Flashner 35daddede1
gnu: gcc@7: Update description.
* gnu/packages/gcc.scm (gcc@7)[description]: Remove Java from the list
of supported languages.
2017-09-13 08:55:49 +03:00
Efraim Flashner ab53bdf01c
gnu: isl: Update to 0.18.
* gnu/packages/gcc.scm (isl): Update to 0.18.
(isl-0.11): New variable.
(gcc@4.8, cloog)[inputs]: Use isl-0.11.
2017-09-13 08:55:47 +03:00
Efraim Flashner 2b8d4ce819
gnu: gcc: Clean up inputs.
* gnu/packages/gcc.scm (gcc@4.7)[inputs]: Remove isl, cloog.
(gcc@4.8)[inputs]: Add isl, cloog.
(gcc@6)[inputs]: Remove cloog.
2017-09-13 08:55:45 +03:00
Efraim Flashner dd4efefdb0
gnu: gcc@4.9: Inherit from gcc@4.8.
* gnu/packages/gcc.scm (gcc@4.9)[inherit]: Inherit from gcc@4.8.
[supported-systems]: Remove field.
2017-09-13 08:55:42 +03:00
Tobias Geerinckx-Rice 3f9a4eaf92
gnu: awscli: Update to 1.11.151.
* gnu/packages/python.scm (awscli): Update to 1.11.151.
2017-09-13 04:30:32 +02:00
Tobias Geerinckx-Rice 46841c07ec
gnu: python-s3transfer: Update to 0.1.11.
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.11.
2017-09-13 04:30:32 +02:00
Tobias Geerinckx-Rice 01fc102e37
gnu: python-botocore: Update to 1.7.9.
* gnu/packages/python.scm (python-botocore): Update to 1.7.9.
2017-09-13 04:30:31 +02:00
Christopher Baines c9ce8e1766
gnu: Update signing-party.
Also add more inputs to make the caff program run. I haven't successfully used
it yet though.

* gnu/packages/gnupg.scm (signing-party)[version]: Update to 2.6.
  [source]: Update origin sha256.
  [native-inputs]: Add autoconf and automake.
  [inputs]: Add perl-text-template, perl-mime-tools, perl-gnupg-interface and
  perl-net-idn-encode as these are required by caff. Also add libmd as this is
  required by TODO.
  [arguments]: Add the change-directory and wrap-programs phase, and fix a
  regex and Makefile path in the configure phase.
2017-09-12 22:59:38 +01:00
Christopher Baines 329779159b
gnu: Add libmd.
* gnu/packages/crypto.scm (libmd): New variable.
2017-09-12 22:59:38 +01:00
Christopher Baines 34ef575590
gnu: Add perl-gnupg-interface.
* gnu/packages/gnupg.scm (perl-gnupg-interface): New variable.
2017-09-12 22:59:37 +01:00
Christopher Baines 996364fb4e
gnu: Add perl-text-template.
* gnu/packages/perl.scm (perl-text-template): New variable.
2017-09-12 22:59:37 +01:00
Christopher Baines 24c1c51334
gnu: Add perl-net-idn-encode.
* gnu/packages/perl.scm (perl-net-idn-encode): New variable.
2017-09-12 22:59:37 +01:00
Christopher Baines a6fe930452
gnu: Add perl-mime-tools.
* gnu/packages/perl.scm (perl-mime-tools): New variable.
2017-09-12 22:59:37 +01:00
Christopher Baines d6daca0ee5
gnu: Add perl-mailtools.
* gnu/packages/perl.scm (perl-mailtools): New variable.
2017-09-12 22:59:37 +01:00
Christopher Baines 2d6125ed4d
gnu: Add perl-convert-binhex.
* gnu/packages/perl.scm (perl-convert-binhex): New variable.
2017-09-12 22:59:36 +01:00
Christopher Baines b7206dd362
gnu: Add perl-moox-late.
* gnu/packages/perl.scm (perl-moox-late): New variable.
2017-09-12 22:59:36 +01:00
Christopher Baines 40db2394b2
gnu: Add perl-moox-handlesvia.
* gnu/packages/perl.scm (perl-moox-handlesvia): New variable.
2017-09-12 22:59:36 +01:00
Christopher Baines 3565756f44
gnu: Add perl-data-perl.
* gnu/packages/perl.scm (perl-data-perl): New variable.
2017-09-12 22:59:36 +01:00
Christopher Baines 3a58f45502
gnu: Add perl-moox.
* gnu/packages/perl.scm (perl-moox): New variable.
2017-09-12 22:59:36 +01:00
Ludovic Courtès 1fda01ef42
gnu: texinfo: Add 6.5.
* gnu/packages/texinfo.scm (texinfo-latest): New variable.
2017-09-12 23:56:34 +02:00
Tobias Geerinckx-Rice bbb1246fd8
gnu: youtube-dl: Update to 2017.09.11.
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.11.
2017-09-12 23:36:24 +02:00
Tobias Geerinckx-Rice 097b80e180
gnu: gtksourceview: Update to 3.24.4.
* gnu/packages/gtk.scm (gtksourceview): Update to 3.24.4.
2017-09-12 23:36:24 +02:00
Tobias Geerinckx-Rice db122a9b5e
gnu: libpeas: Update to 1.22.0.
* gnu/packages/gnome.scm (libpeas): Update to 1.22.0.
[inputs]: Remvoe libxml2.
2017-09-12 23:36:23 +02:00
Tobias Geerinckx-Rice 0f8c520408
gnu: network-manager: Update to 1.8.2.
* gnu/packages/gnome.scm (network-manager): Update to 1.8.2.
2017-09-12 23:36:23 +02:00
Tobias Geerinckx-Rice 8fc5cdc6a0
gnu: tracker: Update to 1.12.3.
* gnu/packages/gnome.scm (tracker): Update to 1.12.3.
2017-09-12 23:36:23 +02:00
Tobias Geerinckx-Rice 9c2d0a1aa8
gnu: gnome-shell-extensions: Update to 3.24.3.
* gnu/packages/gnome.scm (gnome-shell-extensions): Update to 3.24.3.
2017-09-12 23:36:22 +02:00
Tobias Geerinckx-Rice bd38e6a560
gnu: gnome-settings-daemon: Update to 3.24.3.
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.24.3.
2017-09-12 23:36:22 +02:00
Tobias Geerinckx-Rice f97e96ae8b
gnu: gsettings-desktop-schemas: Update to 3.24.1.
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 3.24.1.
2017-09-12 23:36:22 +02:00
Ludovic Courtès f40aef6b3b
gnu: cups-filters: Remove reference to "acroread".
* gnu/packages/cups.scm (cups-filters)[arguments]: Pass
"--with-acroread-path".
2017-09-12 23:17:50 +02:00
Ludovic Courtès b263967018
gnu: cups-filters: Pass "--localstatedir".
* gnu/packages/cups.scm (cups-filters)[arguments]: Pass --localstatedir.
2017-09-12 23:15:54 +02:00
Ludovic Courtès 1728c41171
gnu: cups-filters: Make sure filters find Ghostscript.
* gnu/packages/cups.scm (cups-filters)[arguments]: Add
'patch-foomatic-hardcoded-file-names' and 'wrap-filters' phases.
2017-09-12 23:07:41 +02:00
Marius Bakke 790ba6d3e1
gnu: imagemagick: Update to 6.9.9-12.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-12.
2017-09-12 22:55:05 +02:00
Marius Bakke 8d3975459d
gnu: libraw: Update to 0.18.4.
* gnu/packages/photo.scm (libraw): Update to 0.18.4.
2017-09-12 22:55:05 +02:00
Marius Bakke 40c2653375
gnu: ffmpeg: Update to 3.3.4.
* gnu/packages/video.scm (ffmpeg): Update to 3.3.4.
2017-09-12 22:55:05 +02:00
Marius Bakke 51fcc6d2ae
gnu: feh: Update to 2.20.
* gnu/packages/image-viewers.scm (feh): Update to 2.20.
2017-09-12 22:55:05 +02:00
Marius Bakke 493f2cbf06
gnu: notmuch: Update to 0.25.1.
* gnu/packages/mail.scm (notmuch): Update to 0.25.1.
2017-09-12 22:55:05 +02:00
Marius Bakke 777f485ee6
gnu: python-django: Update to 1.10.8 [fixes CVE-2017-12794].
* gnu/packages/django.scm (python-django): Update to 1.10.8.
2017-09-12 22:55:05 +02:00
ng0 8b8702c939
gnu: neomutt: Update to 20170912.
* gnu/packages/mail.scm (neomutt): Update to 20170912.
2017-09-12 21:17:55 +02:00
Dave Love b08952f1bb
gnu: openmpi: Configure without builtin atomics.
See https://www.mail-archive.com/users@lists.open-mpi.org//msg31400.html

* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure with
--enable-builtin-atomics.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-09-12 14:56:59 +02:00
Dave Love a247fe7b0d
gnu: openmpi: Remove Valgrind from closure.
* gnu/packages/mpi.scm (openmpi)[arguments]: Elide romio config info to
avoid reference to valgrind.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-12 08:58:27 +02:00
ng0 b5831eb771
gnu: Add mate.
* gnu/packages/mate.scm (mate): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:42 +03:00
ng0 16cd07c163
gnu: Add mate-control-center.
* gnu/packages/mate.scm (mate-control-center): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:40 +03:00
ng0 4d553e0a93
gnu: Add mate-media.
* gnu/packages/mate.scm (mate-media): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:37 +03:00
ng0 da78e01b87
gnu: Add mate-applets.
* gnu/packages/mate.scm (mate-applets): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:34 +03:00
ng0 0bb3d6bf3a
gnu: Add mate-settings-daemon.
* gnu/packages/mate.scm (mate-settings-daemon): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:31 +03:00
ng0 9c9909effb
gnu: Add libmatekbd.
* gnu/packages/mate.scm (libmatekbd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:28 +03:00
ng0 133cb8766c
gnu: Add libmatemixer.
* gnu/packages/mate.scm (libmatemixer): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:25 +03:00
ng0 c3812bec8e
gnu: Add mate-panel.
* gnu/packages/mate.scm (mate-panel): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:23 +03:00
ng0 a8376ca5bf
gnu: Add mate-session-manager.
* gnu/packages/mate.scm (mate-session-manager): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:21 +03:00
ng0 4d26a340b5
gnu: Add marco.
* gnu/packages/mate.scm (marco): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:20 +03:00
ng0 17df429ce6
gnu: Add mate-terminal.
* gnu/packages/mate.scm (mate-terminal): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:18 +03:00
ng0 42a6eaaceb
gnu: Add caja.
* gnu/packages/mate.scm (caja): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-12 09:55:10 +03:00
Efraim Flashner fa7647c631
gnu: monero: Fix building on aarch64-linux.
* gnu/packages/finance.scm (monero)[arguments]: Add a configure-flag to
set architecture type on aarch64.
2017-09-12 09:55:07 +03:00
Jan Nieuwenhuizen f435379762
gnu: mes: Update to 0.10.
* gnu/packages/mes.scm (mes): Update to 0.10.
2017-09-11 18:03:42 -04:00
Leo Famulari 007b92cfc0
gnu: mpg123: Update to 1.25.6 [fixes CVE-2017-12797].
* gnu/packages/mp3.scm (mpg123): Update to 1.25.6.
2017-09-11 13:23:26 -04:00
Tobias Geerinckx-Rice 5564b2c53e
gnu: libchamplain: Update to 0.12.16.
* gnu/packages/gnome.scm (libchamplain): Update to 0.12.16.
2017-09-11 15:01:20 +02:00
Tobias Geerinckx-Rice 45586b8dd8
gnu: gnome-online-accounts: Update to 3.24.3.
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.3.
2017-09-11 15:01:20 +02:00
Ludovic Courtès 66ae958c5b
gnu: emacs: Patch message-mode enriched text translation [security fix].
* gnu/packages/patches/emacs-unsafe-enriched-mode-translations.patch:
New file.
* gnu/packages/emacs.scm (emacs)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-11 14:52:29 +02:00
Jan Nieuwenhuizen 238ee64802
gnu: nyacc: Update to 0.82.0.
* gnu/packages/mes.scm (nyacc): Update to 0.82.0.
2017-09-11 14:44:05 +02:00
Ben Woodcroft d8661f52b1
gnu: ruby-activesupport: Update to 5.1.4.
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.4.
2017-09-11 21:43:20 +10:00
宋文武 6bda496286
gnu: icedtea-8: Install the nss.cfg file to JRE.
Before this, accessing HTTPS will throw an exception about 'nss.cfg' could not
be found.

* gnu/packages/java.scm (icedtea-8)[arguments]: Copy 'nss.cfg' from JDK into
JRE in the install phase.
2017-09-11 19:07:56 +08:00
Ludovic Courtès 130c3bc894
gnu: gdb: Update to 8.0.1.
* gnu/packages/gdb.scm (gdb): Update to 8.0.1.
2017-09-11 11:57:51 +02:00
Ludovic Courtès 21c2757f27
gnu: guix: Update snapshot.
* gnu/packages/package-management.scm (guix): Update to a9468b4.
2017-09-11 11:36:38 +02:00
Theodoros Foradis 79228a52d2
gnu: Add monero-core.
* gnu/packages/finance.scm (monero-core): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-11 11:10:21 +02:00
Theodoros Foradis 8514662b20
gnu: Add monero.
* gnu/packages/finance.scm (monero): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-11 11:10:20 +02:00
Efraim Flashner e5f3d1183c
gnu: libffcall: Update to 2.0.
* gnu/packages/libffcall.scm (libffcall): Update to 2.0.
2017-09-11 11:16:11 +03:00
Mark H Weaver 4b4869ce97
gnu: linux-libre: Update to 4.13.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.1.
(%linux-libre-hash): Update hash.
2017-09-11 00:42:09 -04:00
Mark H Weaver 3abc12d6d2
gnu: linux-libre@4.9: Update to 4.9.49.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.49.
2017-09-11 00:41:24 -04:00
Jelle Licht cfd34f4316
gnu: python-apsw: Build with all extensions.
* gnu/packages/python.scm (python-apsw)[phases]: Replace build phase; add flag
  to build all extensions. Add build-test-helper to allow testing of
  extensions.
2017-09-11 01:12:59 +02:00
Tobias Geerinckx-Rice c1b815a5b8
gnu: gnome-sudoku: Update to 3.26.0.
* gnu/packages/gnome.scm (gnome-sudoku): Update to 3.26.0.
2017-09-11 00:54:03 +02:00
Tobias Geerinckx-Rice 55a9f04052
gnu: gnome-klotski: Update to 3.22.2.
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.22.2.
2017-09-11 00:54:02 +02:00
Tobias Geerinckx-Rice da40501ba5
gnu: libgnome-games-support: Update to 1.2.3.
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.3.
2017-09-11 00:54:01 +02:00
Tobias Geerinckx-Rice e0f4966448
gnu: cloc: Fix typo in description.
* gnu/packages/code.scm (cloc)[description]: Fix typo.
2017-09-11 00:54:01 +02:00
Tobias Geerinckx-Rice 7ca001c33d
gnu: cloc: Update to 1.74.
* gnu/packages/code.scm (cloc): Update to 1.74.
[source]: Update source URL.
2017-09-11 00:54:00 +02:00
Tobias Geerinckx-Rice 4e4de30a4b
gnu: youtube-dl: Update to 2017.09.10.
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.10.
2017-09-11 00:54:00 +02:00
Kei Kebreau 4561498e1f
gnu: Fix build failures caused by commit
d10092b849.

* gnu/packages/bioinformatics.scm (seek)[arguments]: Restore previous phase
order.
* gnu/packages/ci.scm (cuirass)[arguments]: Add patch-/bin/sh phase.
2017-09-10 18:21:35 -04:00
Jan Nieuwenhuizen 4aafce22ab
gnu: Add emacs-bash-completion.
* gnu/packages/emacs.scm (emacs-bash-completion): New variable.
2017-09-10 22:43:05 +02:00
Efraim Flashner 338b58e0ea
gnu: openjpeg: Fix CVE-2017-14164.
* gnu/packages/image.scm (openjpeg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-14164.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-10 22:00:35 +03:00
Efraim Flashner 224bb4b6f9
gnu: graphicsmagick: Fix CVE-2017-14165.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-10 21:45:45 +03:00
Christopher Baines 814da59fcc
gnu: Add emacs-wgrep.
* gnu/packages/emacs.scm (emacs-wgrep): New variable.
2017-09-10 19:27:00 +01:00
Christopher Baines 81808194ac
gnu: Add emacs-rspec.
* gnu/packages/emacs.scm (emacs-rspec): New variable.
2017-09-10 19:26:51 +01:00
Kei Kebreau 2cc752c0b0
gnu: graphicsmagick: Fix CVE-2017-14042.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-10 09:33:56 -04:00
Tobias Geerinckx-Rice bc64676c46
gnu: btrfs-progs: Update to 4.13.
* gnu/packages/linux.scm (btrfs-progs): Update 4.13.
[native-inputs]: Add acl.
2017-09-10 12:50:32 +02:00
Ludovic Courtès 67a37c6311
gnu: foomatic-filters: Add missing patches.
This is a followup to commit d02aabaf1b.

* gnu/packages/patches/foomatic-filters-CVE-2015-8327.patch: New file.
* gnu/packages/patches/foomatic-filters-CVE-2015-8560.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-09-10 12:00:25 +02:00
Ludovic Courtès 5db0a1cd5a
gnu: Add foo2zjs.
* gnu/packages/cups.scm (foo2zjs): New variable.
2017-09-09 23:01:52 +02:00
Ludovic Courtès d02aabaf1b
gnu: Add foomatic-filters.
* gnu/packages/cups.scm (foomatic-filters): New procedure.
2017-09-09 23:01:52 +02:00
Leo Famulari 45bed1d3ea
gnu: python2-acme: Remove package.
This package has not built successfully for a long time. Since it
appears to have no users, we remove it for now.

* gnu/packages/tls.scm (python2-acme): Remove variable.
2017-09-08 19:55:34 -04:00
Leo Famulari 73a2ef3697
gnu: tcpdump: Remove alternate source URL.
* gnu/packages/admin.scm (tcpdump)[source]: Remove alternate URL.
2017-09-08 19:36:04 -04:00
Leo Famulari 72fe8956f5
gnu: certbot, python-acme: Update to 0.18.1.
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.18.1.
2017-09-08 19:26:55 -04:00
Oleg Pykhalov 1eb6b72483
gnu: Add python-betamax-matchers.
* gnu/packages/python.scm (python-betamax-matchers, python2-betamax-matchers):
  New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-08 18:12:51 +02:00
Oleg Pykhalov 4967946b8a
gnu: Add python-uritemplate.
* gnu/packages/python.scm (python-uritemplate, python2-uritemplate): New
  variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-08 18:08:58 +02:00
Troy Sankey a5d6b0a3d2
gnu: notmuch-addrlookup-c: Update to 8-1.88f156d.
* gnu/packages/mail.scm (notmuch-addrlookup-c): Update to 8-1.88f156d.
[source]: Use git-fetch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-08 18:08:31 +02:00
ng0 a79830d035
gnu: neomutt: Update to 20170907.
* gnu/packages/mail.scm (neomutt): Update to 20170907.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-08 17:43:37 +02:00
Ludovic Courtès 8bfa40eae5
gnu: hwloc: Update to 1.11.8.
* gnu/packages/mpi.scm (hwloc): Update to 1.11.8.
2017-09-08 12:48:08 +02:00
Mark H Weaver b3a63e697d
gnu: linux-libre@4.9: Update to 4.9.48.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.48.
2017-09-08 03:46:16 -04:00
Mark H Weaver 5c6f434d74
gnu: linux-libre@4.4: Update to 4.4.87.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.87.
2017-09-08 03:45:30 -04:00
Ludovic Courtès cd1ad27e6c
gnu: elogind: Use itself as the cgroup controller.
Fixes a regression introduced in
fa67d56541 whereby elogind would fail to
start with:

  Cannot determine cgroup we are running in: No data available
  Out of memory.

thereby preventing log-in altogether.

* gnu/packages/freedesktop.scm (elogind)[arguments]: Pass
"--with-cgroup-controller=elogind".
* gnu/tests/desktop.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-09-08 00:11:21 +02:00
Ludovic Courtès 505760ed08
gnu: elogind: Remove unnecessary configure flag.
* gnu/packages/freedesktop.scm (elogind)[arguments]: Remove
"--with-libcap" configure flag, which is no longer needed.
2017-09-08 00:11:21 +02:00
Leo Famulari 81635ad03e
gnu: tcpdump: Update to 4.9.2 [security fixes].
Fixes CVE-2017-{12893,12894,12895,12896,12897,12898,12899,12900,12901,12902,
12985,12986,12987,12988,12989,12990,12991,12992,12993,12994,12995,12996,12997,
12998,12999,13000,13001,13002,13003,13004,13005,13006,13007,13008,13009,13010,
13012,13013,13014,13015,13016,13017,13018,13019,13020,13021,13022,13023,13024,
13025,13026,13027,13028,13029,13030,13031,13032,13033,13034,13035,13036,13037,
13038,13039,13040,13041,13042,13043,13044,13045,13046,13047,13048,13049,13050,
13051,13052,13053,13054,13055,13687,13688,13689,13690,13725}.

* gnu/packages/admin.scm (tcpdump): Update to 4.9.2.
[source]: Remove patches and add alternate source URL.
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch,
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-09-07 17:44:20 -04:00
Leo Famulari 3b2802f8c4
gnu: certbot, python-acme: Update to 0.18.0.
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.18.0.
2017-09-07 15:47:01 -04:00
Leo Famulari 6a7bd25bf2
gnu: qemu: Fix CVE-2017-{13711,14167}.
* gnu/packages/patches/qemu-CVE-2017-14167.patch
gnu/packages/patches/qemu-CVE-2017-13711.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-09-07 15:46:57 -04:00
Leo Famulari 94d671f673
gnu: libarchive: Replace with libarchive 3.3.2 and fix CVE-2017-14166.
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive-3.3.2): New variable.
* gnu/packages/patches/libarchive-CVE-2017-14166.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-07 14:29:38 -04:00
Oleg Pykhalov ba74ef94d7
gnu: pulseaudio: Update to 11.0.
From af245f3289d14a6f6cc6e5454e64a47241517cf1 Mon Sep 17 00:00:00 2001
From: Oleg Pykhalov <go.wigust@gmail.com>
Date: Thu, 7 Sep 2017 08:23:43 +0300
Subject: [PATCH] gnu: pulseaudio: Update to 11.0.

* gnu/packages/pulseaudio.scm (pulseaudio): Update to 11.0.
2017-09-07 18:18:55 +02:00
Ludovic Courtès 5a7deb1174
gnu: Add BLIS.
* gnu/packages/maths.scm (make-blis): New procedure.
(blis, ignorance): New variables.
(blis/x86_64): New macro.
(blis-sandybridge, blis-haswell, blis-knl): New variables.
2017-09-07 15:38:56 +02:00
Ludovic Courtès c2ffcc4425
gnu: elogind: Add '-L' flag for libcap in libelogind.la.
This fix allows us to revert this series of commits:

  1b97e9261 * gnu: gdm: Add missing input.
  de0c89f18 * gnu: colord: Add missing input.
  7e38ba654 * gnu: accountsservice: Add missing input.
  166bc1b25 * gnu: network-manager: Add missing input.
  daae20894 * gnu: modem-manager: Add missing input.
  1f919459e * gnu: udisks: Add missing input.
  744e9d074 * gnu: mutter: Add missing input.
  0cce140dc * gnu: gnome-session: Add missing input.
  77c2476ae * gnu: polkit: Add missing input.
  124ac301c * gnu: weston: Add missing input.
  472c2223c * gnu: kmscon: Add missing input.

* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'add-libcap-to-search-path' phase.
(weston)[inputs]: Remove LIBCAP.
(udisks): Likewise.
(accountsservice): Likewise.
(modem-manager): Likewise.
* gnu/packages/gnome.scm (colord): Likewise
(gnome-session): Likewise.
(mutter): Likewise.
(network-manager): Likewise.
(gdm): Likewise.
* gnu/packages/polkit.scm (polkit): Likewise.
* gnu/packages/terminals.scm (kmscon): Likewise.
2017-09-07 13:57:42 +02:00
Peter Mikkelsen 26ba09ba35
gnu: elogind: Update to 232.4.
* gnu/packages/freedesktop.scm (elogind): Update to 232.4.
[arguments]: Add --with-rootlibexecdir.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-07 13:57:39 +02:00
Roel Janssen eaff063aa0
gnu: emacs-ess: Relocate the etc directory so that ESS can find it.
* gnu/packages/emacs.scm (emacs-ess): Relocate the etc directory so
  that ESS can find it.
2017-09-07 09:59:32 +02:00
Cyril Roelandt c98f9c5296
gnu: python-tox: Update to 2.8.0.
* gnu/packages/python.scm (python-tox): Update to 2.8.0.
2017-09-06 23:54:22 +02:00
Efraim Flashner 18e565bf67
gnu: terminology: Update to 1.1.1.
* gnu/packages/enlightenment.scm (terminology): Update to 1.1.1.
2017-09-06 22:07:37 +03:00
Peter Mikkelsen 1b97e92613
gnu: gdm: Add missing input.
* gnu/packages/gnome.scm (gdm)[inputs]: Add libcap.
2017-09-06 19:05:56 +03:00
Peter Mikkelsen de0c89f181
gnu: colord: Add missing input.
* gnu/packages/gnome.scm (colord)[inputs]: Add libcap.
2017-09-06 19:05:56 +03:00
Peter Mikkelsen 7e38ba654a
gnu: accountsservice: Add missing input.
* gnu/packages/freedesktop.scm (accountsservice)[inputs]: Add libcap.
2017-09-06 19:05:55 +03:00
Peter Mikkelsen 166bc1b259
gnu: network-manager: Add missing input.
* gnu/packages/gnome.scm (network-manager)[inputs]: Add libcap.
2017-09-06 19:05:55 +03:00
Peter Mikkelsen daae208942
gnu: modem-manager: Add missing input.
* gnu/packages/freedesktop.scm (modem-manager)[inputs]: Add libcap.
2017-09-06 19:05:55 +03:00
Peter Mikkelsen 1f919459eb
gnu: udisks: Add missing input.
* gnu/packages/freedesktop.scm (udisks)[inputs]: Add libcap.
2017-09-06 19:05:55 +03:00
Tobias Geerinckx-Rice 4ef6cfefaa
gnu: python-pyxb: Update to 1.2.6.
* gnu/packages/xml.scm (python-pyxb): Update to 1.2.6.
2017-09-06 17:12:42 +02:00
Tobias Geerinckx-Rice 35a4fefc01
gnu: iproute: Edit description.
* gnu/packages/linux.scm (iproute)[description]: Re-order, be concise, and
omit information that is obsolete, misleading, or irrelevant to Guix users.
2017-09-06 17:12:41 +02:00
Tobias Geerinckx-Rice ddcac5595e
gnu: iproute: Update to 4.13.0.
* gnu/packages/linux.scm (iproute): Update to 4.13.0.
2017-09-06 17:12:40 +02:00
Nicolas Goaziou e9ba22d6e1
gnu: emacs-org: Update to 20170906.
* gnu/packages/emacs.scm (emacs-org): Update to 20170906, a.k.a. Org 9.1.
2017-09-06 14:45:08 +02:00
Efraim Flashner 98df3a88b5
gnu: libzip: Update to 1.3.0 (fixes CVE-2017-14107).
* gnu/packages/compression.scm (libzip): Update to 1.3.0.
[source]: Remove patch.
[arguments]: Remove custom 'patch-perl phase.
* gnu/packages/patches/libzip-CVE-2017-12858.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-06 14:20:43 +03:00
Efraim Flashner 3b7c606965
gnu: openjpeg: Fix CVE-2017-14151, CVE-2017-14152.
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14151.patch,
gnu/packages/patches/openjpeg-CVE-2017-14152.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-06 14:20:40 +03:00
Nicolas Goaziou f049e79dc3
gnu: csound: Update to 6.09.1.
* gnu/packages/audio.scm (csound): Update to 6.09.1.  Change source URI.
* gnu/packages/patches/csound-header-ordering.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove reference to patch above.
2017-09-06 12:51:59 +02:00
Roel Janssen 026ebc141f
gnu: Update calibre to 3.6.0.
* gnu/local.mk: Remove calibre-drop-unrar.patch
* gnu/packages/ebook.scm (calibre): Update to 3.6.0.
  Add python-html5-parser input.
* gnu/packages/patches/calibre-drop-unrar.patch: Remove file.
2017-09-06 12:42:57 +02:00
Roel Janssen 13be557d98
gnu: Add python-html5-parser, python2-html5-parser.
* gnu/packages/python.scm (python-html5-parser): New variable.
  (python2-html5-parser: New variable.
2017-09-06 12:42:40 +02:00
Roel Janssen 2054b52201
gnu: Update python-lxml to 3.8.0.
* gnu/packages/python.scm (python-lxml): Update to 3.8.0.
2017-09-06 12:41:41 +02:00
Christopher Baines 21a656f590
gnu: Add emacs-go-mode.
* gnu/packages/emacs.scm (emacs-go-mode): New variable.
2017-09-06 08:51:38 +01:00
Efraim Flashner 744e9d0745
gnu: mutter: Add missing input.
* gnu/packages/gnome.scm (mutter)[inputs]: Add libcap.
2017-09-06 10:49:59 +03:00
Efraim Flashner 50918af29b
gnu: mutter: Only propagate glib once.
* gnu/packages/gnome.scm (mutter)[propagated-inputs]: Remove duplicate
glib.
2017-09-06 10:49:55 +03:00
Efraim Flashner 0cce140dc2
gnu: gnome-session: Add missing input.
* gnu/packages/gnome.scm (gnome-settings)[inputs]: Add libcap.
2017-09-06 10:49:51 +03:00
Efraim Flashner 77c2476ae3
gnu: polkit: Add missing input.
* gnu/packages/polkit.scm (polkit)[inputs]: Add libcap.
2017-09-06 10:49:47 +03:00
Efraim Flashner 124ac301c1
gnu: weston: Add missing input.
* gnu/packages/freedesktop.scm (weston)[inputs]: Add libcap.
2017-09-06 10:49:44 +03:00
Efraim Flashner 472c2223c0
gnu: kmscon: Add missing input.
* gnu/packages/terminals.scm (kmscon)[inputs]: Add libcap.
2017-09-06 10:49:31 +03:00
Efraim Flashner f1597427f2
gnu: file: Fix CVE-2017-1000249.
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use package/inherit.
* gnu/packages/patches/file-CVE-2017-1000249.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-05 23:04:05 +03:00
Tobias Geerinckx-Rice 5cf0997a0b
gnu: ruby-coderay: Update to 1.1.2.
* gnu/packages/ruby.scm (ruby-coderay): Update to 1.1.2.
2017-09-05 20:57:14 +02:00
Tobias Geerinckx-Rice 26ac5c90c1
gnu: nginx: Enable HTTP/2.0 (ngx_http_v2_module).
* gnu/packages/web.scm (nginx)[arguments]: Add ‘--with-http_v2_module’ flag.
2017-09-05 20:57:14 +02:00
Leo Famulari 514c2f4806
gnu: tcpdump: Fix CVE-2017-[11541,11542,11543].
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (tcpdump)[source]: Use them.
2017-09-05 14:53:50 -04:00
Efraim Flashner 4c2aaa6056
gnu: mesa: Use exactly llvm@3.9.1.
* gnu/packages/gl.scm (mesa)[inputs]: Use llvm@3.9.1.
2017-09-05 21:52:12 +03:00
Efraim Flashner 665c0958d8
gnu: mesa: Enable more drivers.
* gnu/packages/gl.scm (mesa)[arguments]: Split armhf and aarch64 driver
options, add more armhf specific drivers. Add offscreen platform.
2017-09-05 21:52:09 +03:00
Efraim Flashner 1f42989eb0
gnu: libdrm: Enable more drivers for arm and aarch64.
* gnu/packages/xdisorg.scm (libdrm)[arguments]: Add configure flags to
enable experimental architecture-specific video drivers.
2017-09-05 21:52:07 +03:00
Efraim Flashner 0cae36b5e5
gnu: libmediainfo: Adjust build phases.
* gnu/packages/video.scm (libmediainfo)[arguments]: Change to the build
directory before running autogen.
2017-09-05 21:51:03 +03:00
Ricardo Wurmus fa67d56541
gnu: elogind: Update to 232.3.
* gnu/packages/freedesktop.scm (elogind): Update to 232.3.
[home-page]: Use new upstream home page.
[arguments]: Disable tests, add new required configure flags; add build phase
"autogen".
[native-inputs]: Add autoconf, automake, libtool, and python.
2017-09-05 16:59:46 +02:00
Ricardo Wurmus 8036caa75a
gnu: r-tidyr: Update to 0.7.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
2017-09-05 16:59:46 +02:00
Ricardo Wurmus 31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
2017-09-05 16:59:45 +02:00
Roel Janssen 325c039c1d
gnu: Add r-sparql.
* gnu/packages/bioinformatics.scm (r-sparql): New variable.
2017-09-05 11:02:03 +02:00
Tobias Geerinckx-Rice c0ac72e18c
gnu: epiphany: Update to 3.24.4.
* gnu/packages/gnome.scm (epiphany): Update to 3.24.4.
2017-09-05 05:44:27 +02:00
Tobias Geerinckx-Rice b8fb94d5b8
gnu: libvirt: Make selected inputs native-inputs.
* gnu/packages/virtualization.scm (libvirt)[inputs]: Move perl, polkit, and
python from here...
[native-inputs]: ...to here.
2017-09-05 05:27:41 +02:00
Tobias Geerinckx-Rice 2f110b32a4
gnu: libvirt: Update to 3.7.0.
* gnu/packages/virtualization.scm (libvirt): Update to 3.7.0.
[native-inputs]: Add libxslt for xsltproc.
2017-09-05 05:27:40 +02:00
Tobias Geerinckx-Rice 864f2f0ef0
gnu: python-libvirt: Update to 3.7.0.
* gnu/packages/virtualization.scm (python-libvirt): Update to 3.7.0.
2017-09-05 05:27:40 +02:00
Tobias Geerinckx-Rice b3fee5c141
gnu: Use HTTPS for libvirt.org.
* gnu/packages/virtualization.scm (libvirt, python-libvirt)[home-page]:
Use HTTPS.
2017-09-05 05:27:39 +02:00
Mark H Weaver b8b0f536a4
gnu: libidn2: Replace with 2.0.4 [security fixes].
* gnu/packages/libidn.scm (libidn2)[replacement]: New field.
(libidn2-2.0.4): New variable.
2017-09-04 20:39:20 -04:00
Ludovic Courtès a913d9d926
gnu: emacs-tiny: Fix typo.
* gnu/packages/emacs.scm (emacs-tiny)[description]: Fix typo.
2017-09-04 23:52:44 +02:00
Christopher Baines 26361de404
gnu: Add emacs-minitest.
* gnu/packages/emacs.scm (emacs-minitest): New variable.
2017-09-04 22:31:37 +01:00
Marius Bakke a76585e553
Merge branch 'master' into staging 2017-09-04 22:34:28 +02:00
Marius Bakke 1dc32c2961
gnu: gtk+: Update to 3.22.20.
* gnu/packages/gtk.scm (gtk+): Update to 3.22.20.
2017-09-04 22:15:49 +02:00
Marius Bakke 3b6f837393
gnu: pango: Update to 1.40.12.
* gnu/packages/gtk.scm (pango): Update to 1.40.12.
2017-09-04 22:15:28 +02:00
Marius Bakke c427fda233
gnu: classpath-devel: Fix build after d10092b849.
* gnu/packages/java.scm (classpath-devel)[arguments]: Actually run 'bootstrap'
phase.
2017-09-04 22:08:55 +02:00
Alex Kost 8505d34829
gnu: emacs-browse-at-remote: Simplify 'check' phase.
* gnu/packages/emacs.scm (emacs-browse-at-remote)[native-inputs]: Add
'ert-runner'.
[arguments]: Run it in the 'check' phase.
2017-09-04 22:44:59 +03:00
Efraim Flashner 77bb6c227b
gnu: gpm: Fix build.
* gnu/packages/linux.scm (gpm)[arguments]: Patch autogen.sh shebang
during the 'boottstrap phase.
2017-09-04 22:36:01 +03:00
Efraim Flashner b82c63d013
gnu: quassel: Update package definition.
* gnu/packages/irc.scm (quassel)[source]: Remove bundled scripts.
[arguments]: Update comments in 'configure-flags.
[inputs]: Remove oxygen-icons. Move extra-cmake-modules and qttools ...
[native-inputs]: ... to here.
2017-09-04 22:21:33 +03:00
Leo Famulari 4b1dd9ab31
gnu: i3-wm: Update to 4.14.
* gnu/packages/wm.scm (i3-wm): Update to 4.14.
2017-09-04 11:19:27 -04:00
Leo Famulari 6cdb0f4d12
gnu: mpd: Update to 0.20.10.
* gnu/packages/mpd.scm (mpd): Update to 0.20.10.
2017-09-04 11:19:23 -04:00
Oleg Pykhalov 65101a2596
gnu: Add python-ghp-import.
* gnu/packages/version-control.scm (python-ghp-import, python2-ghp-import):
New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:24:04 +02:00
Oleg Pykhalov 6325309898
gnu: Add emacs-tiny.
* gnu/packages/emacs.scm (emacs-tiny): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:24:04 +02:00
Paul Garlick c4d4a77923
gnu: pt-scotch32: use keyword arguments from "scotch32"
*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword
arguments from "scotch32" package, ensuring that the INTSIZE32 macro is
set

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:24:04 +02:00
Mark H Weaver 6bd1c41e87
gnu: linux-libre: Update to 4.13.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.12-i686.conf,
gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.13-i686.conf,
gnu/packages/aux-files/linux-libre/4.13-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2017-09-04 05:31:07 -04:00
Efraim Flashner 709a3bb7b8
gnu: weechat: Change to cmake-build-system.
* gnu/packages/irc.scm (weechat)[build-system]: Switch to
cmake-build-system.
[arguments]: Remove configure-flags, disable tets, remove
'autogen phase.
[inputs]: Remove diffutils, libltdl, openssl, cyrus-sasl. Move gettext ...
[native-inputs]: ... to here. Remove autoconf, file, autogen, automake,
libtool.
2017-09-04 11:21:42 +03:00
Kei Kebreau d10092b849
gnu: Put autoconf-related phases immediately after the 'unpack phase.
* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases
accordingly.
* gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss,
htslib-for-sambamba)[arguments]: Likewise.
* gnu/packages/ci.scm (cuirass)[arguments]: Likewise.
* gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise.
* gnu/packages/cpp.scm (libzen)[arguments]: Likewise.
* gnu/packages/crypto.scm (opendht)[arguments]: Likewise.
* gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise.
* gnu/packages/debug.scm (stress-make)[arguments]: Likewise.
* gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]:
Likewise.
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise.
* gnu/packages/engineering.scm (gerbv)[arguments]: Likewise.
* gnu/packages/erlang.scm (erlang)[arguments]: Likewise.
* gnu/packages/ftp.scm (weex)[arguments]: Likewise.
* gnu/packages/gnome.scm (dia)[arguments]: Likewise.
* gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise.
* gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise.
* gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]:
Likewise.
* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise.
* gnu/packages/irc.scm (weechat)[arguments]: Likewise.
* gnu/packages/java.scm (classpath-devel)[arguments]: Likewise.
* gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise.
* gnu/packages/libusb.scm (hidapi)[arguments]: Likewise.
* gnu/packages/linux.scm (gpm)[arguments]: Likewise.
* gnu/packages/logging.scm (glog)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise.
* gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp)
[arguments]: Likewise.
* gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]:
Likewise.
* gnu/packages/microcom.scm (microcom)[arguments]: Likewise.
* gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise.
* gnu/packages/parallel.scm (slurm)[arguments]: Likewise.
* gnu/packages/pdf.scm (libharu)[arguments]: Likewise.
* gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise.
* gnu/packages/serialization.scm (msgpack)[arguments]: Likewise.
* gnu/packages/shells.scm (scsh)[arguments]: Likewise.
* gnu/packages/telephony.scm (libiax2)[arguments]: Likewise.
* gnu/packages/textutils.scm (dotconf)[arguments]: Likewise.
* gnu/packages/version-control.scm (findnewest)[arguments]: Likewise.
* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
2017-09-04 00:10:59 -04:00
Efraim Flashner 5804c7b616
gnu: libmateweather: Update inputs.
* gnu/packages/mate.scm (libmateweather)[inputs]: Remove gdk-pixpuf.
Move dconf ...
[native-inputs]: ... to here.
2017-09-03 18:01:12 +03:00
ng0 6a548c56ef
gnu: mate-desktop: Add 'gtk-doc' back to native-inputs.
* gnu/packages/mate.scm (mate-desktop)[native-inputs]: Uncomment
'gtk-doc' as input.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-03 16:18:15 +03:00
ng0 60692df286
gnu: mate-themes: Update to 3.22.13.
* gnu/packages/mate.scm (mate-themes): Update to 3.22.13.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-03 16:18:14 +03:00
ng0 68d2eea0b8
gnu: mate-themes: Update inputs.
* gnu/packages/mate.scm (mate-themes)[inputs]: Remove gtk+, gtk-engines,
murrine. Move gdk-pixbuf ...
[native-inputs]: ... to here. Add gtk+@2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-03 16:18:11 +03:00
ng0 4915c51986
gnu: mate-icon-theme: Remove 'gtk+' from native-inputs.
* gnu/packages/mate.scm (mate-icon-theme)[native-inputs]: Remove 'gtk+'.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-03 16:18:08 +03:00
ng0 833b7e0af0
gnu: mate: Use https.
* gnu/packages/mate.scm (mate-icon-theme)[source, home-page]: Use https.
(mate-themes)[source, home-page]: Likewise.
(mate-desktop)[source, home-page]: Likewise.
(libmateweather)[source, home-page]: Likewise.
(mate-menus)[source, home-page]: Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-09-03 16:18:04 +03:00
Mark H Weaver 3c7c916161
gnu: icecat: Update to 52.3.0-gnu1 and add more upstream fixes.
* gnu/packages/gnuzilla.scm (icecat): Update to 52.3.0-gnu1.
[source]: Remove outdated patches and add more selected fixes from
upstream mozilla-esr52.
2017-09-02 19:50:58 -04:00
Mark H Weaver 9a37764014
gnu: linux-libre@4.9: Update to 4.9.47.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.47.
2017-09-02 17:46:22 -04:00
Mark H Weaver 3e51cd8c76
gnu: linux-libre@4.4: Update to 4.4.86.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.86.
2017-09-02 17:45:37 -04:00
Jelle Licht 448339709d
gnu: node: Update to 8.4.0.
* gnu/packages/patches/node-9077.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/node.scm (node): Update to 8.4.0.
(node)[arguments]: Removed broken linter test. Removed dns test.
2017-09-02 22:59:18 +02:00
ng0 4da9beab14
gnu: Add emacs-base16-theme.
* gnu/packages/emacs.scm (emacs-base16-theme): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-09-02 22:40:58 +03:00
Oleg Pykhalov eaf4ba6ef3
gnu: Add emacs-browse-at-remote.
* gnu/packages/emacs.scm (emacs-browse-at-remote): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-09-02 22:40:58 +03:00
Alex Kost 780162c797
gnu: emacs-guix: Update to 0.3.3.
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.3.
2017-09-02 22:40:58 +03:00
Andreas Enge c64692a72d
gnu: pari-gp: Update to 2.9.3.
* gnu/packages/algebra.scm (pari-gp): Update to 2.9.3.
2017-09-02 17:11:49 +02:00
Leo Famulari 7bac819614
gnu: rosegarden: Import bash and lirc modules.
This is a followup to commit 9bc38f2872.

* gnu/packages/music.scm (define-module): Import (gnu packages bash) and
(gnu packages lirc).
2017-09-02 11:07:57 -04:00
Leo Famulari 631c9f743f
gnu: net-tools: Build from a source archive instead of a Git checkout.
* gnu/packages/linux.scm (net-tools)[source]: Use url-fetch and adjust
the source URL accordingly.
[native-inputs]: Add UNZIP.
(net-tools-for-tests)[native-inputs]: Add field so that we can exclude UNZIP.
2017-09-02 11:07:56 -04:00
Marius Bakke aa3542e844
gnu: gdk-pixbuf: Update to 2.36.9.
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.9.
[source]: Remove obsolete patch.
* gnu/packages/patches/gdk-pixbuf-list-dir.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-02 16:51:10 +02:00
Marius Bakke d0cc3a9879
gnu: gtk+: Update to 3.22.19.
* gnu/packages/gtk.scm (gtk+): Update to 3.22.19.
2017-09-02 16:45:34 +02:00
Marius Bakke de02edbf11
gnu: cairo: Update to 1.14.10.
* gnu/packages/gtk.scm (cairo): Update to 1.14.10.
2017-09-02 16:45:13 +02:00
Marius Bakke 168c5f076c
gnu: librsvg: Update to 2.40.18.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.18.
2017-09-02 16:44:46 +02:00
Marius Bakke 1bb0545bb8
gnu: glib: Update to 2.52.3.
* gnu/packages/glib.scm (glib): Update to 2.52.3.
2017-09-02 16:35:04 +02:00
Kei Kebreau d536113df0
gnu: openjpeg: Fix CVE-2017-{14040,14041}.
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14040.patch,
gnu/packages/patches/openjpeg-CVE-2017-14041.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-02 10:21:03 -04:00
Marius Bakke 30dfac27a5
Merge branch 'master' into staging 2017-09-02 15:57:56 +02:00
Marius Bakke d2ee294c04
gnu: pango: Update to 1.40.11.
* gnu/packages/gtk.scm (pango): Update to 1.40.11.
2017-09-02 15:54:46 +02:00
Marius Bakke a4a3d93290
gnu: harfbuzz: Update to 1.5.0.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.5.0.
2017-09-02 15:54:23 +02:00
Marius Bakke 2ec339c25a
Revert "gnu: lzip: Update to 1.19."
This reverts commit 0963e3e450.
2017-09-02 15:50:17 +02:00
Marius Bakke 57cdc1fada
gnu: mesa: Update to 17.1.8.
* gnu/packages/gl.scm (mesa): Update to 17.1.8.
[source]: Add HTTPS download uri.
2017-09-02 15:50:17 +02:00
Marius Bakke 53e16a5a0f
gnu: libdrm: Update to 2.4.83.
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.83.
[inputs]: Remove LIBPTHREAD-STUBS.
[home-page]: Use HTTPS.
2017-09-02 15:50:17 +02:00
Marius Bakke 66d4cd7978
gnu: util-linux: Update to 2.30.1.
* gnu/packages/linux.scm (util-linux): Update to 2.30.1.
2017-09-02 15:40:44 +02:00
Marius Bakke 9238a9c086
gnu: dbus: Update to 1.10.22.
* gnu/packages/glib.scm (dbus): Update to 1.10.22.
2017-09-02 15:40:44 +02:00
Marius Bakke 7035d2dd69
gnu: libva: Update to 1.8.3.
GitHub is now the canonical distribution point of libva:
<https://github.com/01org/libva/issues/52#issuecomment-303465588>

* gnu/packages/video.scm (libva): Update to 1.8.3.
[source](uri): Add new download location.
2017-09-02 15:40:44 +02:00
宋文武 65e4109cdc
gnu: emacs-cider: Update to 0.15.0.
* gnu/packages/emacs.scm (emacs-cider): Update to 0.15.0.
2017-09-02 21:23:34 +08:00
Danny Milosavljevic 9bc38f2872
gnu: Add rosegarden.
* gnu/packages/music.scm (rosegarden): New variable.
2017-09-02 14:29:11 +02:00
Hartmut Goebel 7ae9542bf3
gnu: Add prison.
* gnu/packages/kde-frameworks.scm (prison): New variable.
2017-09-02 13:11:31 +02:00
Hartmut Goebel 7ade80220b
gnu: Add libdmtx.
* gnu/packages/aidc.scm (libdmtx): New variable.
2017-09-02 13:11:30 +02:00
Marius Bakke 3fe666aa29
gnu: perl-www-opensearch: Enable tests.
Fixes <https://bugs.gnu.org/28253>.

* gnu/packages/web.scm (perl-www-opensearch)[native-inputs]: Add
PERL-CLASS-ERRORHANDLER, PERL-DATETIME, PERL-DATETIME-FORMAT-MAIL,
PERL-DATETIME-FORMAT-W3CDTF, PERL-FEED-FIND, PERL-MODULE-PLUGGABLE,
PERL-URI-FETCH, PERL-TEST-SIMPLE, PERL-XML-ATOM and PERL-XML-RSS.
2017-09-02 12:32:51 +02:00
Marius Bakke 47111bb365
gnu: ffmpeg@2.8: Update to 2.8.13.
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.13.
2017-09-02 12:08:54 +02:00
Maxim Cournoyer f306825da8
gnu: exiv2: Update source checksum.
The source archive was updated in place; only a cleanup of non functional
files was done (see: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=28326).

* gnu/packages/image.scm (exiv2)[source]: Update hash.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-09-02 10:40:42 +02:00
Ethan R. Jones 7bd65a6304
gnu: swish-e: Work around compilation error and test failures.
* gnu/packages/search.scm (swish-e)[inputs]: Remove ZLIB and LIBXML2.
[arguments]: Add #:configure-flags.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-09-02 00:58:11 +02:00
Muriithi Frederick Muriuki 2038a48f4d
gnu: Add python-xenon.
* gnu/packages/python.scm (python-xenon, python2-xenon) New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-02 00:58:11 +02:00
Tobias Geerinckx-Rice 6106d195a2
gnu: perl-html-tree: Update to 5.07.
* gnu/packages/web.scm (perl-html-tree): Update to 5.07.
2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice 33fd32c285
gnu: youtube-dl: Update to 2017.09.02.
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.02.
2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice bbfc523d95
gnu: dub: Update to 1.5.0.
* gnu/packages/ldc.scm (dub): Update to 1.5.0.
2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice def056d138
gnu: perl-context-preserve: Update source URL.
* gnu/packages/perl.scm (perl-context-preserve)[source]: Update CPAN author.
2017-09-01 23:52:18 +02:00
Tobias Geerinckx-Rice 0c3a1674e4
gnu: python-ruamel.yaml: Update to 0.15.33.
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.15.33.
2017-09-01 23:52:18 +02:00
Tobias Geerinckx-Rice d5909be93b
gnu: gparted: Update home page.
* gnu/packages/disk.scm (gparted)[home-page]: Use now-HTTPS gparted.org.
2017-09-01 23:52:18 +02:00
Ricardo Wurmus ebbb6301a3
gnu: r-minimal: Update to 3.4.1.
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01 22:05:39 +02:00
Leo Famulari 3bf0245bb8
gnu: vdirsyncer: Update to 0.16.2.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2.
2017-09-01 13:54:23 -04:00
Leo Famulari 3a91ac8378
gnu: python-click-log: Update to 0.2.0.
* gnu/packages/python.scm (python-click-log): Update to 0.2.0.
2017-09-01 13:54:23 -04:00
Leo Famulari 19ecdbedd3
gnu: python-click-threading: Update to 0.4.3.
* gnu/packages/python.scm (python-click-threading): Update to 0.4.3.
[source]: Use pypi-uri.
2017-09-01 13:54:20 -04:00
Leo Famulari 2da21e48a8
gnu: python-icalendar: Update to 3.11.7.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
2017-09-01 13:41:39 -04:00
Ricardo Wurmus 81195d139f
gnu: r-genomicalignments: Update to 1.12.2.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
2017-09-01 15:11:58 +02:00
Ricardo Wurmus 89b620e7ee
gnu: r-tidyr: Update to 0.7.0.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
2017-09-01 15:11:58 +02:00
Ricardo Wurmus c4a4ef39ed
gnu: Add r-tidyselect.
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01 15:11:58 +02:00
Ricardo Wurmus db2e43863c
gnu: r-vegan: Update to 2.4-4.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4.
[native-inputs]: Remove r-knitr.
2017-09-01 15:11:57 +02:00
Ricardo Wurmus 7b92acdf52
gnu: r-maldiquant: Update to 1.16.4.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
2017-09-01 15:11:57 +02:00
Ricardo Wurmus 6bd27981f6
gnu: r-bookdown: Update to 0.5.
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
2017-09-01 15:11:56 +02:00
Ricardo Wurmus c62276b2fa
gnu: r-ksamples: Update to 1.2-7.
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
2017-09-01 15:11:56 +02:00
Ricardo Wurmus 28f2f89391
gnu: r-distillery: Update to 1.0-4.
* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
2017-09-01 15:11:55 +02:00
Ricardo Wurmus f7b172187a
gnu: r-sp: Update to 1.2-5.
* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
2017-09-01 15:11:55 +02:00
Ricardo Wurmus bf958fcd63
gnu: r-ggally: Update to 1.3.2.
* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
2017-09-01 15:11:55 +02:00
Ricardo Wurmus 38ea6cfab4
gnu: r-reshape: Update to 0.8.7.
* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
2017-09-01 15:11:54 +02:00
Ricardo Wurmus eeb5432802
gnu: r-powerlaw: Update to 0.70.1.
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
2017-09-01 15:11:54 +02:00
Ricardo Wurmus a5c2980486
gnu: r-circlize: Update to 0.4.1.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
2017-09-01 15:11:54 +02:00
Ricardo Wurmus ea4d4f7616
gnu: r-shape: Update to 1.4.3.
* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
2017-09-01 15:11:53 +02:00
Ricardo Wurmus 9077f6d9aa
gnu: r-tclust: Update to 1.3-1.
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01 15:11:53 +02:00
Ricardo Wurmus 347cab66b6
gnu: r-fastcluster: Update to 1.1.24.
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01 15:11:52 +02:00
Ricardo Wurmus d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01 15:11:52 +02:00
Ricardo Wurmus 2dda8fca6f
gnu: r-plotrix: Update to 3.6-6.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01 15:11:51 +02:00
Ricardo Wurmus 7d60652ebe
gnu: r-httr: Update to 1.3.1.
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01 15:11:51 +02:00
Ricardo Wurmus e3323e0707
gnu: r-commonmark: Update to 1.4.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01 15:11:51 +02:00
Ricardo Wurmus 5d84369bda
gnu: r-ade4: Update to 1.7-8.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01 15:11:50 +02:00
Ricardo Wurmus fb10c923b3
gnu: r-tibble: Update to 1.3.4.
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01 15:11:50 +02:00
Ricardo Wurmus edd5fd7208
gnu: r-rlang: Update to 0.1.2.
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01 15:11:49 +02:00
Ricardo Wurmus 5a00ef0950
gnu: r-knitr: Update to 1.17.
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01 15:11:49 +02:00
Ricardo Wurmus 3949aef601
gnu: r-bh: Update to 1.65.0-1.
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01 15:11:49 +02:00
Ricardo Wurmus b93881b9c5
gnu: r-scales: Update to 0.5.0.
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01 15:11:48 +02:00
Ricardo Wurmus 2d99a31607
gnu: r-mgcv: Update to 1.8-19.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01 15:11:48 +02:00
Ricardo Wurmus fefe9f4753
gnu: r-matrix: Update to 1.2-11.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01 15:11:48 +02:00
Ricardo Wurmus 3c2a5bf299
gnu: r-servr: Update to 0.7.
* gnu/packages/web.scm (r-servr): Update to 0.7.
2017-09-01 15:11:47 +02:00
Julien Lepiller 1cf306639c
gnu: php: Update to 7.1.9.
* gnu/packages/php.scm (php): Update to 7.1.9.
2017-09-01 14:17:46 +02:00
Julien Lepiller dcf7a8a660
gnu: java-slf4j-api: Fix tests.
* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests
Adjust the jar content to prevent a test failure.
2017-09-01 14:17:24 +02:00
Z. Ren 5fe2a139df
gnu: djvulibre: Remove timestamps from .svgz files.
* gnu/packages/djvu.scm (djvulibre)[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 11:05:32 +02:00
Oleg Pykhalov 833ade67f1
gnu: Add emacs-tuareg.
* gnu/packages/ocaml.scm (emacs-tuareg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:39:55 +02:00
ng0 4735393a76
gnu: emacs-ebuild-mode: Update to 1.37.
* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:34:50 +02:00
ng0 ab966b8f61
gnu: Add emacs-2048-game.
* gnu/packages/emacs.scm (emacs-2048-game): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01 10:34:36 +02:00
Ricardo Wurmus 75690c9f6b
gnu: r-rcas: Correct license.
* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
2017-09-01 10:26:31 +02:00
Ricardo Wurmus eda8f36cd6
gnu: r-rcas: Update to 1.3.3.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
2017-09-01 10:26:30 +02:00
Efraim Flashner 7d099cbe13
gnu: mysql: Enable tests on aarch64.
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling
the tests on aarch64-linux.
2017-09-01 10:50:39 +03:00
Ben Woodcroft f4bf420c84
gnu: vsearch: Update to 2.4.4.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
2017-09-01 14:45:57 +08:00
Ben Woodcroft 25bd1fc1c1
gnu: metabat: Update to 2.12.1.
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it.  Use url-fetch.
2017-09-01 14:45:57 +08:00
Thomas Danckaert 43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references.
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
  'Configured On' date; truncate reference to compiler store item.
2017-09-01 08:34:32 +02:00
Thomas Danckaert e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers.
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
  truncate hashes of compiler store items.
2017-09-01 08:34:32 +02:00
Thomas Danckaert fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers.
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
  "libhdf5.settings", removing references to the C/C++/Fortran compilers.
2017-09-01 08:34:31 +02:00
Thomas Danckaert e3a1a1deda
gnu: hdf5: Add output for fortran interface.
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
  [outputs]: Add "fortran".
  [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
  output to the runpath of the Fortran libs; add a 'split phase to move
  all Fortran-related files to the the Fortran output store location.
2017-09-01 08:34:24 +02:00
Arun Isaac a0596a2f27
gnu: python2-larch: Enable tests.
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python2-larch)[source]: Use it.
[arguments]: Move 'check' phase to before 'build' phase.
2017-09-01 11:14:16 +05:30
Arun Isaac f618086220
gnu: python2-ttystatus: Enable tests.
* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check'
phase with custom function.
2017-09-01 11:14:16 +05:30
Arun Isaac 689042e526
gnu: python2-cliapp: Enable tests.
* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase
with custom function.
2017-09-01 11:14:16 +05:30
Mark H Weaver fe36ecf5c8
gnu: linux-libre: Update to 4.12.10.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.10.
(%linux-libre-hash): Update hash.
2017-09-01 00:31:55 -04:00
Mark H Weaver 2131663a76
gnu: linux-libre@4.9: Update to 4.9.46.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.46.
2017-09-01 00:31:16 -04:00
Mark H Weaver d215e41a26
gnu: linux-libre@4.4: Update to 4.4.85.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.85.
2017-09-01 00:30:17 -04:00
Marius Bakke 1b3f5fc387
gnu: libxml2/fixed: Use patches from inherited package.
This is a followup to 76fed2b3c4.

* gnu/packages/xml.scm (libxml2/fixed)(patches): Inherit patches from LIBXML2.
2017-08-31 23:43:55 +02:00
Efraim Flashner 0ff44ba464
gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches.
* gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-01 00:02:27 +03:00
Efraim Flashner d36212e94d
gnu: efl: Update to 1.20.3.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.3.
2017-09-01 00:02:25 +03:00
Christopher Baines a9d5e4bed1
gnu: Fix current-guix.
Without this change, I get errors like:
  ERROR: In procedure string-drop:
  ERROR: Value out of range 0 to 35: 51

* gnu/packages/package-management.scm (current-guix): Pass exactly the same
  path to git-predicate and local-file, to ensure that the select? function is
  compatible.
2017-08-31 21:48:05 +01:00
Marius Bakke fa9f5222a9
gnu: sddm: Update to 0.15.0.
* gnu/packages/display-managers.scm (sddm): Update to 0.15.0.
[source]: Update tarball name.
[inputs]: Add ELOGIND.
[arguments]: Adjust #:configure-flags for elogind support. Add phase to
patch hard-coded loginctl reference.
2017-08-31 22:35:54 +02:00
Alex Vong 76fed2b3c4
gnu: libxml2: Fix CVE-2017-{0663,7375,7376,9047,9048,9049,9050}.
* gnu/packages/patches/libxml2-CVE-2017-0663.patch,
gnu/packages/patches/libxml2-CVE-2017-7375.patch,
gnu/packages/patches/libxml2-CVE-2017-7376.patch,
gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch,
gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-31 21:45:36 +02:00
Marius Bakke ff54f194f3
gnu: postgresql: Update to 9.6.5.
* gnu/packages/databases.scm (postgresql): Update to 9.6.5.

Release-notes: https://www.postgresql.org/docs/9.6/static/release-9-6-5.html
2017-08-31 21:34:20 +02:00
Ricardo Wurmus 59ff96aafd
gnu: Remove python2-rpy2.
Python 2 is no longer supported.

* gnu/packages/python.scm (python2-rpy2): Remove variable.
2017-08-31 18:24:52 +02:00
Ricardo Wurmus deee5ddaf4
gnu: python-rpy2: Update to 2.9.0.
* gnu/packages/python.scm (python-rpy2): Update to 2.9.0.
[arguments]: Run tests before install phase; add build phase "fix-tests".
[propagated-inputs]: Add python-jinja2 and python-pytz.
[inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
2017-08-31 18:24:51 +02:00
Ricardo Wurmus c92483bd63
gnu: python-rpy2: Update license.
* gnu/packages/python.scm (python-rpy2)[license]: Correct GPLv3+ to GPLv2+;
list additional licenses.
2017-08-31 18:24:51 +02:00
Ricardo Wurmus caa4e796e4
gnu: Add r-dbplyr.
* gnu/packages/statistics.scm (r-dbplyr): New variable.
2017-08-31 18:24:51 +02:00
Kei Kebreau 4eebfefe7e
gnu: retux: Update to 1.3.5.
* gnu/packages/games.scm (retux): Update to 1.3.5.
2017-08-31 11:38:00 -04:00
Kei Kebreau 95c1324adc
gnu: python-tmx: Update to 1.10.
* gnu/packages/game-development.scm (python-tmx): Update to 1.10.
2017-08-31 11:38:00 -04:00
Kei Kebreau b1d1a10c7c
gnu: python-sge-pygame: Update to 1.5.1.
* gnu/packages/game-development.scm (python-sge-pygame,
python2-sge-pygame): Update to 1.5.1.
2017-08-31 11:37:59 -04:00
Marius Bakke 7e31427ff0
gnu: python-pyjwt: Update to 1.5.2 [fixes CVE-2017-11424].
* gnu/packages/python.scm (python-pyjwt): Update to 1.5.2.
[source]: Add snippet to remove pre-compiled files.
[native-inputs]: Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
2017-08-31 15:45:43 +02:00
Peter Mikkelsen 5883bb76f8
gnu: Add emacs-idris-mode.
* gnu/packages/emacs.scm (emacs-idris-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 14:58:34 +02:00
Peter Mikkelsen b9dcaced16
gnu: Add emacs-prop-menu.
* gnu/packages/emacs.scm (emacs-prop-menu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 14:57:53 +02:00
Tobias Geerinckx-Rice 79ada57ba9
gnu: knot: Update to 2.5.4.
* gnu/packages/dns.scm (knot): Update to 2.5.4.
2017-08-31 13:53:04 +02:00
Paul Garlick 1c25a52c4a
gnu: Add pt-scotch32.
* gnu/packages/maths.scm (pt-scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
Paul Garlick 1c39f3b877
gnu: Add "scotch32".
* gnu/packages/maths.scm (scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
Ben Woodcroft 0691851a64
gnu: bioinformatics: Work around more "dotless @INC" build failures.
* gnu/packages/bioinformatics.scm (ncbi-vdb, sra-tools)[arguments]: Add
'set-perl-search-path' phase.
2017-08-31 12:37:05 +08:00
Ben Woodcroft c959e5a1dc
gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.2.7)[source]: Use it.
2017-08-31 10:43:19 +08:00
Ben Woodcroft db542518b3
gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.3.4)[source]: Use it.
2017-08-31 10:43:19 +08:00
Ben Woodcroft 9770cbf9e2
gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ruby.scm (ruby-2.4.1)[source]: Use them.
2017-08-31 10:43:19 +08:00
Ben Woodcroft 690a904ad7
gnu: metabat: Update to 2.11.3.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.3.
[source]: Use git-fetch.  Remove boost-related patch.
* gnu/packages/patches/metabat-fix-boost-issue.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-31 10:43:18 +08:00
Marius Bakke 2d2e97bd71
gnu: vlc: Fix build and clean up expression.
Commit 3e0c54bf4d touches 'configure.ac' which
in turn regenerates 'po/Makefile.in.in' with the wrong SHELL and breaks
install.  While at it, consolidate the other patching phases and remove
unneeded inputs.

* gnu/packages/video.scm (vlc)[arguments]: Consolidate patching phases into a
'patch-source' phase and run it immediately after unpack.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
2017-08-31 03:43:54 +02:00
Marius Bakke 3e0c54bf4d
gnu: vlc: Recover lost phase.
This is a followup to eb1f2420d5.

* gnu/packages/video.scm (vlc)[arguments]: Run the fix-livemedia-utils-prefix
phase before configure.
2017-08-31 03:05:24 +02:00
Marius Bakke 4f68156140
gnu: gd: Replace with 2.2.5.
Fixes CVE-2017-6362 and CVE-2017-7890.

* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.5): New variable.
* gnu/packages/php.scm (gd-for-php): Remove variable
(php)[inputs]: Replace GD-FOR-PHP with GD-2.2.5.
* gnu/packages/patches/gd-CVE-2017-7890.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-31 02:49:43 +02:00
Tobias Geerinckx-Rice cad88b8533
gnu: claws-mail: Update to 3.15.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.15.1.
2017-08-31 00:57:46 +02:00
Ludovic Courtès 9ff7161a06
gnu: Add texlive-latex-acmart.
* gnu/packages/tex.scm (texlive-latex-acmart): New variable.
2017-08-31 00:03:20 +02:00
Marius Bakke 9749746544
gnu: mbedtls-apache: Update to 2.6.0 [fixes CVE-2017-14032].
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.6.0.
2017-08-30 22:41:40 +02:00
Marius Bakke eb1f2420d5
gnu: vlc: Remove obsolete test workaround.
* gnu/packages/video.scm (vlc)[arguments]: Drop ac_cv_c_fast_math from
  #:configure-flags.  Remove related 'bootstrap' phase.
2017-08-30 22:35:45 +02:00
Marius Bakke 552c3e95f3
gnu: vlc: Build with modular qt.
* gnu/packages/video.scm (vlc)[inputs]: Remove QT.  Add QTBASE and QTX11EXTRAS.
[arguments]: Add CXXFLAGS=-std=gnu++11 to #:configure-flags.  Add
'fix-qt-include' phase.
2017-08-30 22:22:51 +02:00
Marius Bakke 2de7d137b3
gnu: qemu: Update to 2.10.0.
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11334.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch,
gnu/packages/patches/qemu-CVE-2017-12809.patch:
gnu/packages/patches/qemu-CVE-2017-7493.patch,
gnu/packages/patches/qemu-CVE-2017-8112.patch,
gnu/packages/patches/qemu-CVE-2017-8309.patch,
gnu/packages/patches/qemu-CVE-2017-8379.patch,
gnu/packages/patches/qemu-CVE-2017-8380.patch,
gnu/packages/patches/qemu-CVE-2017-9524.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.0.
[source](patches): Remove.
2017-08-30 20:50:13 +02:00
Marius Bakke ffeeda6bab
gnu: jsoncpp: Update to 1.8.2.
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.2.
2017-08-30 20:36:40 +02:00
Ricardo Wurmus 799247d2d9
gnu: multiqc: Update to 1.2.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2.
[source]: Remove patches.
[arguments]: Remove to enable tests.
[propagated-inputs]: Add python-spectra, python-requests, python-markdown,
python-lzstring.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-30 17:32:00 +02:00
Ricardo Wurmus 4a7d2009c8
gnu: Add python-spectra.
* gnu/packages/python.scm (python-spectra, python2-spectra): New variables.
2017-08-30 17:32:00 +02:00
Ricardo Wurmus beed6abc1d
gnu: Add python-colormath.
* gnu/packages/python.scm (python-colormath, python2-colormath): New
variables.
2017-08-30 17:31:59 +02:00
Ricardo Wurmus bac5fd21a1
gnu: python-jinja2: Update to 2.9.6.
* gnu/packages/python.scm (python-jinja2): Update to 2.9.6.
[arguments]: Add build phase "delete-incompatible-files".
2017-08-30 17:31:59 +02:00
Ricardo Wurmus e7c76b0661
gnu: Add python-lzstring.
* gnu/packages/compression.scm (python-lzstring, python2-lzstring): New
variables.
2017-08-30 17:31:59 +02:00
Kei Kebreau b9319c1e22
gnu: hyperrogue: Update to 10.0g.
* gnu/packages/games.scm (hyperrogue): Update to 10.0g.
2017-08-30 07:43:24 -04:00
Arun Isaac a00379e7dc
gnu: Add linkchecker.
* gnu/packages/web.scm (linkchecker): New variable.
2017-08-30 12:53:39 +05:30
Thomas Danckaert c93ffc11d0
gnu: kdevelop: Update to 5.1.2.
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.2.
2017-08-30 09:20:53 +02:00
Thomas Danckaert e0fbf37350
gnu: coda: Update to 2.18.2.
* gnu/packages/maths.scm (coda): Update to 2.18.2.
2017-08-30 09:20:52 +02:00
Stefan Reichör f3f82d1d1f
gnu: Add fzy.
* gnu/packages/shellutils.scm (fzy): New variable.
2017-08-30 09:20:52 +02:00
Rutger Helling 9dd14f1e08
gnu: wine: Update to 2.0.2.
* gnu/packages/wine.scm (wine): Update to 2.0.2.
2017-08-30 09:20:52 +02:00
Carlo Zancanaro 13035eb2de
gnu: electrum: Update to 2.9.3.
* gnu/packages/finance.scm (electrum): Update to 2.9.3.
[inputs]: Add python2-pyaes, python2-pysocks. Remove python2-slowaes.
2017-08-30 09:20:52 +02:00
Carlo Zancanaro 7a276cd945
gnu: Add python-pyaes.
* gnu/packages/python.scm (python-pyaes, python2-pyaes): New variables.
2017-08-30 09:20:52 +02:00
Carlo Zancanaro 07e62ae1c2
gnu: Add python-pysocks.
* gnu/packages/python.scm (python-pysocks, python2-pysocks): New variables.
2017-08-30 09:20:45 +02:00
Tobias Geerinckx-Rice b85a66b4d5
gnu: dtach: Install man page.
* gnu/packages/screen.scm (dtach)[arguments]: Install the dtach(1) man page.
2017-08-30 04:45:43 +02:00
Tobias Geerinckx-Rice 249ab8cc3e
gnu: nginx: Install man page.
* gnu/packages/web.scm (nginx)[arguments]: Install the nginx(8) man page,
and add a comment about the non-GNU configure script.
2017-08-30 03:24:19 +02:00
Kei Kebreau 3c8ba11a97
Update e-mail for Kei Kebreau.
* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
2017-08-29 20:13:24 -04:00
Tobias Geerinckx-Rice b1c699c4c0
gnu: perl-tk: Update to 804.034.
* gnu/packages/tcl.scm (perl-tk): Update to 804.034.
2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice 77217b4393
gnu: font-mathjax, js-mathjax: Remove hard-coded version.
* gnu/package-s/javascript.scm (font-mathjax, js-mathjax)[arguments]: Re-use
font-mathjax's ‘version’ field instead of duplicating the version number.
2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice d6a7268bae
gnu: font-mathjax: Update to 2.7.2.
* gnu/packages/javascript.scm (font-mathjax): Update to 2.7.2.
2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice d3f0e09882
gnu: tiled: Update to 1.0.3.
* gnu/packages/game-development.scm (tiled): Update to 1.0.3.
2017-08-29 23:40:08 +02:00
Efraim Flashner 08cba8cca4
gnu: libgcrypt: Fix CVE-2017-0379.
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New variable.
2017-08-29 23:32:16 +03:00
R H 0ae32da8d6
gnu: qtox: Update to 1.11.0.
* gnu/packages/messaging.scm (qtox): Update to 1.11.0.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-30 01:18:50 +05:30
Christopher Baines 02654c47b2
gnu: Escape @ in the perl-importer package description.
@EXPORT is interpreted as a texinfo command, therefore the @ needs
escaping. This was causing a test failure in the guix-package.sh file.

* gnu/packages/perl.scm (perl-importer)[description]: Escape @.
2017-08-29 20:15:46 +01:00
Andy Wingo 69dcad33c8
gnu: emacs-lua-mode: Update to current git.
* gnu/packages/emacs.scm (emacs-lua-mode): Update; fixes a very annoying bug
with syntax highlighting of multi-line strings.
2017-08-29 19:52:16 +02:00
Danny Milosavljevic 84d9abe450
gnu: Add python-pyalsaaudio.
* gnu/packages/audio.scm (python-pyalsaaudio, python2-pyalsaaudio): New
variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-29 20:06:12 +08:00
Efraim Flashner 47deafb81c
gnu: font-gnu-unifont: Update to 10.0.06.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.06.
2017-08-29 12:38:12 +03:00
Nicolas Goaziou 8b618c79e0
gnu: emacs-org: Update to 20170828
* gnu/packages/emacs.scm (emacs-org): Update to 20170828 (a.k.a. 9.0.10).
2017-08-28 16:37:12 +02:00
Efraim Flashner 92cc6a5801
gnu: gnupg: Clean up arguments.
* gnu/packages/gnupg.scm (gnupg)[arguments]: Shorten the
'patch-test-paths phase.
2017-08-28 17:25:00 +03:00
Efraim Flashner e184de5748
gnu: gnupg: Update to 2.2.0.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.0.
[arguments]: Add flag to run more tests.
2017-08-28 17:24:58 +03:00
Ricardo Wurmus 174fbd5f3b
gnu: r-minimal: Remove timestamp from man page.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
2017-08-28 15:51:05 +02:00
Efraim Flashner af9bb4cab8
gnu: pspp: Update to 1.0.1.
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
2017-08-28 14:44:41 +03:00
Efraim Flashner 475b99fa5c
gnu: jemalloc: Update to 5.0.1.
* gnu/packages/jemalloc.scm (jemalloc): Update to 5.0.1.
[inputs]: Add perl.
2017-08-28 11:53:20 +03:00
Ludovic Courtès a881a40cea
gnu: emacs-nix-mode: Move to package-management.scm.
Reported by Christopher Baines.
This fixes a top-level reference among mutually-dependent modules.

* gnu/packages/emacs.scm (emacs-nix-mode): Move to...
* gnu/packages/package-management.scm (emacs-nix-mode): ... here.
2017-08-28 09:56:33 +02:00
Efraim Flashner 15d61488a6
gnu: xf86-video-freedreno: Add missing input.
* gnu/packages/xorg.scm (xf86-video-freedreno)[inputs]: Add zlib.
2017-08-28 10:14:25 +03:00
Leo Famulari 9baa969758
gnu: libzip: Fix CVE-2017-12858.
* gnu/packages/patches/libzip-CVE-2017-12858.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/compression.scm (libzip)[source]: Use it.
2017-08-27 19:51:45 -04:00
Tobias Geerinckx-Rice 152fc9594e
gnu: srt2vtt: Update source URL.
* gnu/packages/video.scm (srt2vtt)[source]: Fetch sources from new URL.
2017-08-28 01:44:44 +02:00
Leo Famulari 51988e3a03
gnu: Give descriptive file-names for some Git sources.
* gnu/packages/java.scm (classpath-devel)[source]: Set the file-name.
* gnu/packages/guile.scm (guile-for-guile-emacs,
guile-syntax-highlight)[source]: Likewise.
2017-08-27 18:24:50 -04:00
Leo Famulari 5f13bf0972
gnu: Fetch several Git sources over HTTPS.
* gnu/packages/admin.scm (interrobang)[source]: Use HTTPS URL.
* gnu/packages/audio.scm (ardour)[source]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[source]: Likewise.
* gnu/packages/gnome.scm (byzanz)[source]: Likewise.
* gnu/packages/gnunet.scm (guile-gnunet)[source]Likewise.
* gnu/packages/java.scm (classpath)[source]: Likewise.
* gnu/packages/microcom.scm (microcom)[source]: Likewise.
* gnu/packages/python.scm (python-axolotl-curve25519)[source]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[source]: Likewise.
* gnu/packages/shells.scm (rc)[source]: Likewise.
* gnu/packages/web.scm (libwebsockets)[source]: Use new source URL.
2017-08-27 18:24:49 -04:00
Tobias Geerinckx-Rice ad539230f1
gnu: youtube-dl: Update to 2017.08.27.1.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.27.1.
2017-08-27 22:58:19 +02:00
Tobias Geerinckx-Rice c10d502423
gnu: iodine: Fix path to ifconfig.
* gnu/packages/networking.scm (iodine)[arguments]: Fix path to ifconfig.
2017-08-27 22:23:51 +02:00
Leo Famulari 01f248b606
gnu: filezilla: Update to 3.27.1.
* gnu/packages/ftp.scm (filezilla): Update to 3.27.1.
2017-08-27 16:04:31 -04:00
Leo Famulari a9af060e5d
gnu: libfilezilla: Update to 0.10.1.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.10.1.
[native-inputs]: Add pkg-config.
2017-08-27 16:04:30 -04:00
Leo Famulari 1c059a6e16
gnu: wxwidgets: Update to 3.0.3.
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.3.
[source]: Remove 'wxwidgets-fix-windowGTK.patch'.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-27 16:04:25 -04:00
Andy Wingo 2999dcd5b7
gnu: gnome: Install some GStreamer plugins.
* gnu/packages/gnome.scm (gnome): Add gst-plugins-base and gst-plugins-good.
This will allow stock GNOME installs to play Ogg Vorbis files, among other
things.  It will also ensure that GST_PLUGIN_SYSTEM_PATH is set to a sensible
value when GNOME is installed to the system instead of the user profile.
2017-08-27 20:59:46 +02:00
Andy Wingo 39c853bd61
gnu: totem: Wrap environment for thumbnailer.
* gnu/packages/gnome.scm (totem): Wrap thumbnailer also in environment that
  sets GST_PLUGIN_SYSTEM_PATH.
2017-08-27 20:59:35 +02:00
Efraim Flashner ff16170ab9
gnu: nano: Update to 2.8.7.
* gnu/packages/nano.scm (nano): Update to 2.8.7.
2017-08-27 16:29:37 +03:00
Marius Bakke ebd181138e
gnu: perl: Work around more "dotless @INC" build failures.
* gnu/packages/perl.scm (perl-unicode-collate)[arguments]: Add
'set-perl-search-path' phase.
* gnu/packages/xorg.scm (perl-x11-xcb)[arguments]: Likewise.
2017-08-27 15:07:21 +02:00
Marius Bakke 88d5889c40
gnu: perl-www-opensearch: Provide Module::Install.
* gnu/packages/web.scm (perl-www-opensearch)[native-inputs]: Add PERL-MODULE-INSTALL.
2017-08-27 15:07:21 +02:00
Marius Bakke 522f199562
gnu: perl-xml-atom: Update to 0.42.
* gnu/packages/xml.scm (perl-xml-atom): Update to 0.42.
[arguments]: Add 'set-perl-search-path' phase.
[native-inputs]: Add PERL-HTML-TAGSET and PERL-MODULE-BUILD-TINY.
2017-08-27 15:07:21 +02:00
Marius Bakke 9978567460
gnu: babl: Update to 0.1.30.
* gnu/packages/gimp.scm (babl): Update to 0.1.30.
2017-08-27 15:07:21 +02:00
Marius Bakke b45c050545
gnu: Remove unneeded import.
* gnu/packages/engineering.scm: Don't import (srfi srfi-1) in top scope.
2017-08-27 15:07:21 +02:00
Marius Bakke fab46af832
gnu: tdb: Update to 1.3.15.
* gnu/packages/databases.scm (tdb): Update to 1.3.15.
2017-08-27 15:07:21 +02:00
Efraim Flashner 6909c24093
gnu: enlightenment: Update to 0.21.9.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.9.
2017-08-27 15:53:13 +03:00
Kei Kebreau ab11563797
gnu: xauth: Enable tests.
* gnu/packages/xorg.scm (xauth)[arguments]: Enable tests.
[native-inputs]: Add cmdtest.
2017-08-26 15:40:55 -04:00
Kei Kebreau cd669fdeb1
gnu: Add cmdtest.
* gnu/packages/check.scm (cmdtest): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-26 15:26:45 -04:00
Marius Bakke 4028fd395e
Merge branch 'master' into staging 2017-08-26 15:34:29 +02:00
Marius Bakke 72e2815d18
Merge branch 'core-updates' 2017-08-26 15:15:49 +02:00
Andy Wingo c20cd0d24d
gnu: gnome: Depend on xdg-user-dirs.
* gnu/packages/gnome.scm (gnome): Add xdg-user-dirs dependency.  The presence
  of the autostart file in /run/current-system/profile/etc/xdg should cause
  xdg-user-dirs to be run when a user logs in, ensuring that they have
  ~/Pictures and other well-known user directories.
2017-08-26 13:37:30 +02:00
Andy Wingo b9bf08f058
gnu: Add xdg-user-dirs.
* gnu/packages/freedesktop.scm (xdg-user-dirs): New public variable.
2017-08-26 13:37:19 +02:00
Julien Lepiller 446695775d
gnu: Add radare2.
* gnu/packages/engineering.scm (radare2): New variable.
2017-08-26 13:01:36 +02:00
Julien Lepiller f70be0113f
gnu: Add python-capstone.
* gnu/packages/engineering.scm (python-capstone, python2-capstone): New
variables.
2017-08-26 13:01:32 +02:00
Julien Lepiller 6febda9443
gnu: Add capstone.
* gnu/packages/engineering.scm (capstone): New variable.
2017-08-26 13:01:11 +02:00
Oleg Pykhalov d987a006dc
gnu: youtube-dl: Update to 2017.08.23.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.23.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-26 13:35:44 +05:30
宋文武 acf7a958a6
gnu: pv: Update to 1.6.6.
* gnu/packages/pv.scm (pv): Update to 1.6.6.
2017-08-26 14:09:05 +08:00
Mark H Weaver 828f0109ee
gnu: linux-libre: Update to 4.12.9.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.9.
(%linux-libre-hash): Update hash.
2017-08-25 23:53:32 -04:00
Mark H Weaver 50e34c608e
gnu: linux-libre@4.9: Update to 4.9.45.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.45.
2017-08-25 23:52:58 -04:00
Mark H Weaver cd2247cccd
gnu: linux-libre@4.4: Update to 4.4.84.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.84.
2017-08-25 23:52:14 -04:00
Marius Bakke 2f837cf7fe
gnu: perl: Add more missing dependencies on Module::Install.
* gnu/packages/databases.scm (perl-dbix-class, perl-dbix-class-cursor-cached,
  perl-dbix-class-introspectablem2m,
  perl-dbix-class-schema-loader)[native-inputs]: Add PERL-MODULE-INSTALL.
* gnu/packages/web.scm (perl-catalyst-action-renderview,
  perl-catalyst-action-rest, perl-catalyst-authentication-store-dbix-class,
  perl-catalyst-component-instancepercontext, perl-catalyst-model-dbic-schema,
  perl-catalyst-plugin-authentication,
  perl-catalyst-plugin-authorization-roles, perl-catalyst-plugin-configloader,
  perl-catalyst-plugin-session, perl-catalyst-plugin-session-state-cookie,
  perl-catalyst-plugin-stacktrace, perl-catalyst-plugin-static-simple,
  perl-catalyst-traitfor-request-proxybase, perl-catalyst-view-download,
  perl-catalyst-view-json, perl-catalystx-script-server-starman,
  perl-test-www-mechanize, perl-test-www-mechanize-catalyst)[native-inputs]:
  Likewise.
* gnu/packages/xorg.scm (perl-x11-xcb)[native-inputs]: Likewise.
2017-08-25 22:24:10 +02:00
Marius Bakke a21db79e52
gnu: perl-catalyst-runtime: Update to 5.90115.
* gnu/packages/web.scm (perl-catalyst-runtime): Update to 5.90115.
[native-inputs]: Add PERL-MODULE-INSTALL.
2017-08-25 22:23:53 +02:00
Leo Famulari 35131babc1
gnu: go: Update to 1.9.
* gnu/packages/golang.scm (go-1.8): Replace with ...
(go-1.9): ... new variable.
[arguments]: Adjust the pre-build phase accordingly.
2017-08-25 12:28:58 -04:00
Andy Wingo e0e6756fbd
gnu: gdm: Fix environment of worker processes and sessions.
* gnu/packages/gnome.scm (gdm): Get X server path from GDM_X_SERVER
environment variable, and make sure this variable is propagated to internal
sub-processes.  Launch sessions with a reasonable XDG_CONFIG_DIRS setting.
Get the custom GDM conf from the current system's profile.
2017-08-25 16:01:56 +02:00
Andy Wingo 957dbc0a4d
gnu: gdm: Use proper elogind check, and wrap environment.
* gnu/packages/gnome.scm (gdm): Use glib-or-gtk-build-system to make sure the
schemas are available to GDM.  Install gdm to /bin to make this happen.  Use a
proper elogind check.
2017-08-25 16:01:56 +02:00
Andy Wingo af37e6bbd4
gnu: gdm: Look for sessions in /run/current-system.
* gnu/packages/gnome.scm (gdm): Fix search paths for system sessions.  Use
  /var as localstatedir.  Set a more sensible default path for user sessions.
2017-08-25 16:01:56 +02:00
Andy Wingo e76008dbc8
gnu: accountsservice: Properly reference shadow.
* gnu/packages/freedesktop.scm (accountsservice): Fix references to binaries
  provided by the shadow package.
2017-08-25 16:01:45 +02:00
Efraim Flashner cb8b14f182
gnu: parallel: Update to 20170822.
* gnu/packages/parallel.scm (parallel): Update to 20170822.
2017-08-25 09:15:12 +03:00
Mark H Weaver 1934769ba1
gnu: libmikmod: Add fallback source URL, needed for older versions.
* gnu/packages/sdl.scm (libmikmod)[source]: Add a fallback source URL where
older versions are kept.
2017-08-25 02:08:52 -04:00
Ricardo Wurmus 0b4f40e4fa
gnu: yoshimi: Update to 1.5.3.
* gnu/packages/music.scm (yoshimi): Update to 1.5.3.
2017-08-25 04:55:05 +02:00
Ricardo Wurmus 5cff549c60
gnu: zynaddsubfx: Update to 3.0.2.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.2.
2017-08-25 04:51:07 +02:00
Ricardo Wurmus 44aca1a3e5
gnu: guile-xcb: Update source URL.
* gnu/packages/guile-wm.scm (guile-xcb)[source]: Use archived tarball URL.
2017-08-25 02:15:14 +02:00
Ludovic Courtès 649c438c23
gnu: font-mathjax: Move to javascript.scm.
This avoids cross-module top-level references.

* gnu/packages/fonts.scm (font-mathjax): Move to...
* gnu/packages/javascript.scm (font-mathjax): ... here.  New variable.
2017-08-24 23:55:51 +02:00
Ludovic Courtès 87f057c46e
gnu: font-go: Remove reference to 'go-1.4'.
This avoids circular references at the top level.

* gnu/packages/fonts.scm (font-go)[license]: Remove reference to
GO-1.4.
2017-08-24 23:55:51 +02:00
Stefan Reichör 84342e2fa9
gnu: Add honcho.
* gnu/packages/python.scm (python-honcho, python2-honcho): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-24 21:27:23 +02:00
Marius Bakke a251838d67
gnu: maim: Update to 5.4.68.
* gnu/packages/xdisorg.scm (maim): Update to 5.4.68.
2017-08-24 21:21:04 +02:00
Marius Bakke 8752fa6cba
gnu: slop: Update to 7.3.49.
* gnu/packages/xdisorg.scm (slop): Update to 7.3.49.
2017-08-24 21:21:04 +02:00
Ricardo Wurmus 3f8efbb9a4
gnu: guile-wm: Update source URL.
* gnu/packages/guile-wm.scm (guile-wm)[source]: Use archived URL.
2017-08-24 20:42:45 +02:00
Thomas Danckaert 17e56dac12
gnu: libreoffice: Fix icons, enable liblangtag.
* gnu/packages/libreoffice.scm (libreoffice) [inputs]: Add liblangtag.
  [arguments]: Correct icon names in .desktop files; copy desktop files &
  icons for libreoffice-math and libreoffice-startcenter; enable parallel
  build; enable liblangtag.
2017-08-24 19:52:16 +02:00
Tobias Geerinckx-Rice 5cdb0cd380
gnu: dovecot: Update to 2.2.32.
* gnu/packages/mail.scm (dovecot): Update to 2.2.32.
2017-08-24 16:38:47 +02:00
Efraim Flashner 5fc9b6c108
gnu: lollypop: Use pseudo meson build system.
* gnu/packages/gnome.scm (lollypop)[arguments]: Disable tests. Delete
configure phase, replace build and install phase with custom phases.
[native-inputs]: Add ninja.
[propagated-inputs]: Move gst-plugins-base ...
[inputs]: ... to here. Add meson.
2017-08-24 15:33:13 +03:00
Hartmut Goebel e3c13d044f
gnu: libksysguard: Enable more tests (not all working yet).
* gnu/packages/kde.scm (libksysguard)[arguments]
  <#:phases>'check-setup': Set QT_QPA_PLATFORM=offscreen.
  <#:phases>'check': Enable all tests except of the failing one.
2017-08-24 12:32:34 +02:00
Arun Isaac 2d6da7942a
gnu: python2-ttystatus: Update to 0.35.
* gnu/packages/python.scm (python2-ttystatus): Update to 0.35.
2017-08-24 14:28:41 +05:30
Arun Isaac f6c5821530
gnu: cliapp: Update to 1.20170823.
* gnu/packages/python.scm (python2-cliapp): Update to 1.20170823.
2017-08-24 14:20:45 +05:30
Efraim Flashner c47048c328
gnu: datamash: Update to 1.2.
* gnu/packages/datamash.scm (datamash): Update to 1.2.
2017-08-24 10:35:00 +03:00
Efraim Flashner f81039058c
gnu: qemu: Fix CVE-2017-12809.
* gnu/packages/virtualization.scm (qemu)[source]: Add patch.
* gnu/packages/patches/qemu-CVE-2017-12809.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-23 21:56:55 +03:00
Efraim Flashner f00e328fd3
gnu: openjpeg: Fix CVE-2017-12982.
* gnu/packages/image.scm (openjepg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-23 21:07:07 +03:00
Ricardo Wurmus d7eea7d7ae
gnu: python-scikit-learn: Update to 0.19.0.
* gnu/packages/python.scm (python-scikit-learn): Update to 0.19.0.
2017-08-23 17:31:54 +02:00
Rutger Helling cc527b5048
gnu: xpra: Update to 2.1.1.
* gnu/packages/xorg.scm (xpra): Update to 2.1.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 20:38:09 +08:00
Rutger Helling 8a7f958ed9
gnu: higan: Update to 104.
* gnu/packages/games.scm (higan): Update to 104.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 20:24:15 +08:00
Rutger Helling 56cdca9537
gnu: retroarch: Update to 1.6.7.
* gnu/packages/games.scm (retroarch): Update to 1.6.7.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 20:13:41 +08:00
Thomas Danckaert 35e657017c
gnu: id3lib: Remove bundled zlib.
* gnu/packages/mp3.scm (id3lib)[source]: Remove bundled zlib.
[inputs]: Add zlib.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 19:58:26 +08:00
Christopher Baines 903e051a71
gnu: libvirt: Wrap with iproute and qemu.
libvirtd runs qemu if it's configured to use it, and also uses the ip command.

* gnu/packages/virtualization.scm (libvirt)[arguments]: Add wrap-libvirtd
  phase.
2017-08-23 12:44:21 +01:00
Christopher Baines 0577a3fd92
gnu: Build the shared library for yaml-cpp.
* gnu/packages/serialization.scm (yaml-cpp)[arguments]: Add
  -DBUILD_SHARED_LIBS=ON to #:configure-flags.
2017-08-23 10:07:22 +01:00
Marius Bakke 4e58740aff
gnu: whois: Update to 5.2.18.
* gnu/packages/networking.scm (whois): Update to 5.2.18.
2017-08-22 23:17:14 +02:00
Marius Bakke 2e4569829e
gnu: Add f2fs-tools.
* gnu/packages/linux.scm (f2fs-tools): New variable.
2017-08-22 23:13:42 +02:00
Marius Bakke 7ac2cab8c9
gnu: Add icedtea-web.
* gnu/packages/java.scm (icedtea-web): New variable.
2017-08-22 23:02:13 +02:00
ng0 77a0354a36
gnu: gnurl: Update to 7.55.1-3.
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1-3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-22 21:52:05 +02:00
Ricardo Wurmus bd3a184613
gnu: r-minimal: Do not compress serialized files.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.

Fixes <https://bugs.gnu.org/28157>.
2017-08-22 16:24:24 +02:00
Ricardo Wurmus 6be54a8751
gnu: Add rmath-standalone.
* gnu/packages/statistics.scm (rmath-standalone): New variable.
2017-08-22 16:24:24 +02:00
Efraim Flashner 94b179c675
gnu: gst-plugins-bad: Build with wayland support.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add wayland.
2017-08-22 17:04:39 +03:00
Efraim Flashner fe535d81ae
gnu: libraw: Update to 0.18.2.
* gnu/packages/photo.scm (libraw): Update to 0.18.2.
[source, home-page]: Use https.
2017-08-22 16:57:59 +03:00
Z. Ren 0e4d822e3f
gnu: skalibs: Build reproducibly.
* gnu/packages/skarnet.scm (skalibs)[arguments]: Add #:phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-22 15:19:49 +02:00
Ludovic Courtès c15374e03d
gnu: libjpeg-turbo: Build reproducibly.
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add #:configure-flags.

Co-authored-by: Z. Ren <zren@dlut.edu.cn>
2017-08-22 15:19:49 +02:00
Thomas Danckaert 1206c95a49
gnu: python-netcdf4: Update to 1.2.9.
* gnu/packages/python.scm (python-netcdf4): Update to 1.2.9.
2017-08-22 09:02:32 +02:00
Thomas Danckaert 5c78db6222
gnu: python-h5py: Update to 2.7.0.
* gnu/packages/python.scm (python-h5py): Update to 2.7.0.
2017-08-22 09:02:24 +02:00
Efraim Flashner 285e18e9ae
gnu: terminology: Update to 1.1.0.
* gnu/packages/enlightenment.scm (terminology): Update to 1.1.0.
[source]: Remove bundled fonts and references to them.
[native-inputs]: Add gettext-minimal.
2017-08-22 09:49:27 +03:00
Oleg Pykhalov 61b31ac46f
gnu: Update emacs-rainbow-mode to 0.13.
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 0.13.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-22 00:00:56 +02:00
Oleg Pykhalov 86a9b1633c
gnu: python-internetarchive: Update to 1.7.1.
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-22 00:00:56 +02:00
Tobias Geerinckx-Rice 58f3d45996
gnu: python-marshmallow: Update to 3.0.0b3.
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.
2017-08-21 22:54:38 +02:00
Tobias Geerinckx-Rice 4ecab114fd
gnu: python-pylast: Update to 1.9.0.
* gnu/packages/python.scm (python-pylast): Update to 1.9.0.
2017-08-21 22:54:38 +02:00
Tobias Geerinckx-Rice 3592a57255
gnu: lollypop: Update to 0.9.244.
* gnu/packages/gnome.scm (lollypop): Update to 0.9.244.
2017-08-21 22:54:37 +02:00
Tobias Geerinckx-Rice 9f9d2a723f
gnu: gspell: Update to 1.4.2.
* gnu/packages/gnome.scm (gspell): Update to 1.4.2.
2017-08-21 22:54:37 +02:00
Marius Bakke 3ce16aeac5
gnu: imagemagick: Update to 6.9.9-9.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.
2017-08-21 22:48:44 +02:00
Marius Bakke 51eecee7b9
gnu: feh: Update to 2.19.3.
* gnu/packages/image-viewers.scm (feh): Update to 2.19.3.
2017-08-21 22:48:44 +02:00
Tobias Geerinckx-Rice 88648855f8
gnu: perl-net-dns: Update to 1.12.
* gnu/packages/networking.scm (perl-net-dns): Update to 1.12.
2017-08-21 17:38:08 +02:00
Tobias Geerinckx-Rice 46057c0a3f
gnu: zstd: Update to 1.3.1.
* gnu/packages/compression.scm (zstd): Update to 1.3.1.
2017-08-21 17:38:07 +02:00
Dave Love 6c171ff47c
gnu: openmpi: Configure without vampirtrace.
VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.

* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
Dave Love df981d8b36
gnu: openmpi: Modify configuration to reduce closure.
devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged.  Only the affinity component of
mpi-ext is useful.

* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
Dave Love 0d97d3cbff
gnu: openmpi: Remove references to compiler pathnames in "_info" programs.
This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version.  (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.)  There may still
be a case for a separate runtime output.

* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
Dave Love 84bf845abc
gnu: valgrind: Add separate "doc" output.
* gnu/packages/valgrind.scm (valgrind)[outputs]: New field.
[arguments]: Add 'install-doc' phase.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
Dave Love 327404aeaa
gnu: openmpi: Remove "static" output.
--enable-static removes dynamically-loaded MCA components.

* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
Dave Love 685bef2bd1
gnu: openmpi: Add separate variant with thread-multiple support.
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
Theodoros Foradis cf684d87d7
gnu: z3: Build Python bindings.
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase.  Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags.  Remove #:test-target.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:53 +02:00
Efraim Flashner bd2e321061
gnu: augeas: Update to 1.8.1. Fixes CVE-2017-7555.
* gnu/packages/augeas.scm (augeas): Update to 1.8.1.
2017-08-21 16:02:23 +03:00
Marius Bakke 2718a9cd09
Merge branch 'master' into core-updates 2017-08-21 02:40:37 +02:00
ng0 e904de7ec1
gnu: gnurl: Update to 7.55.1.
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-21 01:05:06 +02:00
Efraim Flashner 1dbd34329b
gnu: vifm: Update to 0.9.
* gnu/packages/vim.scm (vifm): Update to 0.9.
[source]: Add alternate uri.
[arguments]: Remove build timestamp. Add phase to install vim plugins
into vim plugin directory. Patch more shebangs.
2017-08-20 23:23:17 +03:00
Efraim Flashner bda6c35093
gnu: pspp: Update to 1.0.0.
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
2017-08-20 21:44:47 +03:00
Marius Bakke 9c4ce3afac
gnu: perl-test-trap: Update to 0.3.2.
* gnu/packages/perl.scm (perl-test-trap): Update to 0.3.2.
[source, version]: Remove 'v' prefix from version field.
2017-08-20 17:33:16 +02:00
Marius Bakke 7295a0c020
gnu: perl-test-trap: Add missing dependency on Test::Simple.
* gnu/packages/perl.scm (perl-test-trap)[native-inputs]: Add PERL-TEST-SIMPLE.
2017-08-20 17:33:16 +02:00
Tobias Geerinckx-Rice 29a3325708
gnu: bundler: Update to 1.15.4.
* gnu/packages/ruby.scm (bundler): Update to 1.15.4.
2017-08-20 16:41:39 +02:00
Tobias Geerinckx-Rice 3fa1b08213
gnu: limnoria: Update to 2017.08.18.
* gnu/packages/irc.scm (limnoria): Update to 2017.08.18.
2017-08-20 16:41:39 +02:00
Kei Kebreau 6d7d9d9507
gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}.
* gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
2017-08-20 08:35:45 -04:00
Ricardo Wurmus a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which".
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
2017-08-20 14:00:04 +02:00
Ricardo Wurmus 92a1cb9285
gnu: powertabeditor: Update to 2.0.0-alpha10.
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10.
[arguments]: Remove "set-target-directories" phase; disable additional tests.
2017-08-20 14:00:04 +02:00
Ricardo Wurmus 17cddc1714
gnu: Add r-annotationfilter.
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-08-20 14:00:04 +02:00
Andy Wingo 96d36f385c
gnu: Add gnome-default-applications.
* gnu/packages/gnome.scm (gnome-default-applications): New public variable.
(gnome): Propagate gnome-default-applications so that nautilus is associated
with folders, not baobab.
2017-08-20 13:11:06 +02:00
Andy Wingo a9dbefdc9d
gnu: gnome: Propagate font-dejavu.
* gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to
  provide a better default for "Monospace".  Otherwise the terminal looks
  horrible and defaults to Nimbus Mono, a Courier-like face.
2017-08-20 13:10:56 +02:00
Andy Wingo 50631fe933
gnu: gobby: Re-add Gobby 0.4.
* gnu/packages/gobby.scm (gobby-0.4): New variable.
2017-08-20 11:30:43 +02:00
Andy Wingo 63ad9b80c7
gnu: gnome: Propagate more packages.
* gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by
  Debian's "gnome-core" package.
2017-08-20 11:16:56 +02:00
Arun Isaac 97291c0c7c
gnu: gobby: Update to 0.5.0.
* gnu/packages/gobby.scm (gobby): Update to 0.5.0.
[inputs]: Remove libnet6 and obby. Add libinfinity. Sort.
[arguments]: Add move-executable phase.
2017-08-20 10:52:56 +05:30
Arun Isaac 6a84ec8eb3
gnu: Add libinfinity.
* gnu/packages/gobby.scm (libinfinity): New variable.
2017-08-20 10:52:55 +05:30
Leo Famulari 36ed934dfe
gnu: icedtea@3: Update to 3.5.1.
* gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
2017-08-19 18:50:04 -04:00
Leo Famulari 0c2e2b660d
gnu: icedtea@2: Update to 2.6.11 [security fixes].
Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102,
10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
2017-08-19 18:50:01 -04:00
Thomas Danckaert 7b87132f6e
gnu: libreoffice: Update to 5.3.5.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
2017-08-19 22:46:03 +02:00
Efraim Flashner 128c9b9269
gnu: perl-www-mechanize: Update source uri.
* gnu/packages/web.scm (perl-www-mechanize)[source]: Update to new uri.
2017-08-19 21:52:22 +03:00
Marius Bakke 7eb09e39ed
gnu: perl-net-server: Update to 2.009.
* gnu/packages/web.scm (perl-net-server): Update to 2.009.
2017-08-19 16:43:38 +02:00
Marius Bakke 68d5906c06
gnu: perl-www-mechanize: Update to 1.86.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.86.
[native-inputs]: Add PERL-TEST-DEEP, PERL-TEST-FATAL, PERL-TEST-OUTPUT and
PERL-TEST-WARNINGS.
[propagated-inputs]: Add PERL-HTML-TREE.
2017-08-19 16:43:37 +02:00
Marius Bakke f87c1107d6
gnu: perl: Work around more "dotless @INC" build issues.
* gnu/packages/perl.scm (perl-hash-fieldhash,
  perl-string-camelcase)[arguments]: Add 'set-perl-search-path' phase.
2017-08-19 16:43:37 +02:00
Marius Bakke 1cd5f1776d
gnu: perl-moosex-types-datetime: Update to 0.13.
* gnu/packages/perl.scm (perl-moosex-types-datetime): Update to 0.13.
2017-08-19 16:43:37 +02:00
Marius Bakke 55cca6ac61
gnu: perl-plack-middleware-reverseproxy: Provide Module::Install.
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy)[native-inputs]:
Add PERL-MODULE-INSTALL.
2017-08-19 16:43:37 +02:00
Tobias Geerinckx-Rice e121be1e15
gnu: python-netaddr: Update to 0.7.19.
* gnu/packages/python.scm (python-netaddr): Update to 0.7.19.
2017-08-19 02:17:43 +02:00
Tobias Geerinckx-Rice b7585ca3b9
gnu: lz4: Update to 1.8.0.
* gnu/packages/compression.scm (lz4): Update to 1.8.0.  Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice 00d9124d40
gnu: lz4: Use recommended home page.
* gnu/packages/compression.scm (lz4)[home-page]: Use lz4.org.
2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice 865aacc9fa
gnu: Remove libgames-support.
It was simply the old name (and version) of libgnome-games-support.

* gnu/packages/gnome.scm (libgames-support): Remove variable.  Move the
inherited fields...
(libgnome-games-support): ...to here.
2017-08-19 02:17:41 +02:00
Leo Famulari d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904.
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
2017-08-18 17:24:47 -04:00
Marius Bakke 8c0c0c4def
gnu: python-pygit2: Update to 0.26.0.
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
2017-08-18 21:33:31 +02:00
Tobias Geerinckx-Rice 9d1cc6bc69
gnu: bluez: Update to 5.46.
* gnu/packages/linux.scm (bluez): Update to 5.46.
2017-08-18 15:10:08 +02:00
Tobias Geerinckx-Rice 911c42de40
gnu: cunit: Use ‘modify-phases’ syntax.
* gnu/packages/check.scm (cunit)[arguments]: Use ‘modify-phases’.
2017-08-18 15:08:35 +02:00
Tobias Geerinckx-Rice 0963e3e450
gnu: lzip: Update to 1.19.
* gnu/packages/compression.scm (lzip): Update to 1.19.
[description]: Fix minor typo.
2017-08-18 15:08:25 +02:00
Tobias Geerinckx-Rice 1f9c2351d7
gnu: gnome-shell: Update to 3.24.3.
* gnu/packages/gnome.scm (gnome-shell): Update to 3.24.3.
2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice cd5db77151
gnu: gnome-control-center: Update to 3.24.3.
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.24.3.
2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice d95d6d931e
gnu: gnome-keyring: Update to 3.20.1.
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.20.1.
2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 32d00d78dc
gnu: libgnome-games-support: Update to 1.2.2.
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.2.
2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 9d086c075d
gnu: gjs: Update to 1.48.6.
* gnu/packages/gnome.scm (gjs): Update to 1.48.6.
2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice 69d0674830
gnu: shotwell: Update to 0.26.3.
* gnu/packages/gnome.scm (shotwell): Update to 0.26.3.
2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8.
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08.
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
2017-08-18 14:54:59 +02:00
Thomas Danckaert 598b5481a4
gnu: freerdp: Update inputs.
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
  and docbook-xsl.
  [inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
  libxslt.
  [arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
  docbook-xsl.
2017-08-18 14:52:35 +02:00
Thomas Danckaert cc81f1c349
gnu: freerdp: Revert to version 1.1.
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
  branch 1.1.  [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
  freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
  gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-08-18 14:52:35 +02:00
Efraim Flashner c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64.
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-18 15:50:25 +03:00
Efraim Flashner d983a1cb8e
gnu: libksysguard: Update to 5.10.4.
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
2017-08-18 15:50:23 +03:00
Efraim Flashner de5a235c79
gnu: kde-framework: Update to 5.37.0.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
2017-08-18 15:50:22 +03:00
Efraim Flashner 26ca43bb60
gnu: freeipmi: Update to 1.5.7.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
2017-08-18 15:50:20 +03:00
Nicolas Goaziou 1286ff6161
gnu: giac-xcas: Update to 1.2.3-57.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
2017-08-18 14:31:06 +02:00
Arun Isaac c5361b7c3d
gnu: Add rtl-sdr.
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
2017-08-18 16:54:58 +05:30
Tobias Geerinckx-Rice 2559401037
gnu: youtube-dl: Update to 2017.08.18.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
2017-08-18 08:11:45 +02:00
Tobias Geerinckx-Rice 2c7321eaa7
gnu: libconfuse: Update to 3.2.1.
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
2017-08-18 08:11:45 +02:00
Eric Bavier 623cc34cd2
gnu: rpm: Update to 4.13.0.1.
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch.  Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 21:39:18 -05:00
Arun Isaac 52d445f130
gnu: Add rss-bridge.
* gnu/packages/web.scm (rss-bridge): New variable.
2017-08-18 07:18:04 +05:30
Marius Bakke 961012a0a0
gnu: Add missing import.
This is a followup to d016b60fa3.

* gnu/packages/networking.scm (gnu): Use (gnu packages glib).
2017-08-18 00:48:25 +02:00
Dave Love a099570249
gnu: openmpi: Add RDMA and libfabric support.
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
Dave Love ae5947b0ef
gnu: Add libfabric.
* gnu/packages/linux.scm (libfabric): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
Dave Love 3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs.
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
Dave Love d80a47f2f5
gnu: libnl: Add "doc" output.
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
Nicolas Goaziou d016b60fa3
gnu: wireshark: Update to 2.4.0.
* gnu/packages/networking.scm (wireshark): Update to 2.4.0.  Add "libssh",
  "libxml2", "qtbase" and "qttools" as inputs.  Remove unused "bison", "flex"
  and "gtk+" inputs.
2017-08-18 00:17:24 +02:00
Marius Bakke 9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}].
* gnu/packages/compression.scm (libmspack): Update to 0.6.
2017-08-17 22:32:51 +02:00
Mark H Weaver 2d72ddf529
gnu: linux-libre: Update to 4.12.8.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
2017-08-17 14:41:18 -04:00
Mark H Weaver 1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
2017-08-17 14:40:29 -04:00
Mark H Weaver 821f18719d
gnu: linux-libre@4.4: Update to 4.4.83.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
2017-08-17 14:39:31 -04:00
Manolis Ragkousis e9a599cdce
gnu: Add OpenMW.
* gnu/packages/game-development.scm (openmw): New variable.
2017-08-17 19:40:33 +03:00
Manolis Ragkousis 42d0d13de8
gnu: Add mygui.
* gnu/packages/game-development.scm (mygui): New variable.
2017-08-17 19:35:28 +03:00
Manolis Ragkousis dd75a9a22c
gnu: Add ogre.
* gnu/packages/graphics.scm (ogre): New variable.
2017-08-17 19:11:35 +03:00
Ricardo Wurmus bf3fa99654
gnu: Add r-methylkit.
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
2017-08-17 18:00:17 +02:00
Ricardo Wurmus 8a39e4a553
gnu: sassc: Update to 3.4.5.
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
2017-08-17 18:00:17 +02:00
Alex Vong f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}].
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-17 11:40:29 -04:00
Ricardo Wurmus 05e8a3ef0f
gnu: Add r-ksamples.
* gnu/packages/cran.scm (r-ksamples): New variable.
2017-08-17 17:26:13 +02:00
Ricardo Wurmus abcb849405
gnu: Add r-suppdists.
* gnu/packages/cran.scm (r-suppdists): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 8d22007380
gnu: Add r-energy.
* gnu/packages/cran.scm (r-energy): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 6b4a9aec23
gnu: Add r-fitdistrplus.
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 521e0703d8
gnu: Add r-limsolve.
* gnu/packages/cran.scm (r-limsolve): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus a3e36d3772
gnu: Add r-lpsolve.
* gnu/packages/cran.scm (r-lpsolve): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 212f612040
gnu: Add r-qvalue.
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus d4a1e918cb
gnu: Add r-fastseg.
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus b31e4a9693
gnu: Add r-emdbook.
* gnu/packages/cran.scm (r-emdbook): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 97cb349dc1
gnu: r-trimcluster: Update license.
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 8c72b83096
gnu: Add r-bbmle.
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus d6b156dc04
gnu: Add r-inline.
* gnu/packages/cran.scm (r-inline): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 062b6dbd25
gnu: Add r-lmtest.
* gnu/packages/cran.scm (r-lmtest): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 58db98c9f2
gnu: Add r-extremes.
* gnu/packages/cran.scm (r-extremes): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus 28476b4bc0
gnu: Add r-distillery.
* gnu/packages/cran.scm (r-distillery): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus 6427e62005
gnu: Add r-lmoments.
* gnu/packages/cran.scm (r-lmoments): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus e389d10f55
gnu: Add r-rmtstat.
* gnu/packages/cran.scm (r-rmtstat): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus b723dedf81
gnu: Add r-rook.
* gnu/packages/web.scm (r-rook): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus bc0081e76f
gnu: Add r-sp.
* gnu/packages/cran.scm (r-sp): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus 3349faecf5
gnu: Add r-proxy.
* gnu/packages/cran.scm (r-proxy): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus ac8402072b
gnu: Add r-ggally.
* gnu/packages/cran.scm (r-ggally): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus c9c6f4b543
gnu: Add r-progress.
* gnu/packages/cran.scm (r-progress): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus 71be51d531
gnu: Add r-reshape.
* gnu/packages/cran.scm (r-reshape): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus 18a16ceb7c
gnu: Add r-prettyunits.
* gnu/packages/cran.scm (r-prettyunits): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus 49c9c29790
gnu: Add r-ffbase.
* gnu/packages/cran.scm (r-ffbase): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus a7f0faa204
gnu: Add r-ff.
* gnu/packages/cran.scm (r-ff): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus f2e974e1a2
gnu: Add r-fastmatch.
* gnu/packages/cran.scm (r-fastmatch): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus e0268ff2e4
gnu: Add r-getoptlong.
* gnu/packages/cran.scm (r-getoptlong): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus d3c67e1b45
gnu: Add r-dendextend.
* gnu/packages/cran.scm (r-dendextend): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus 0548660420
gnu: Add r-compare.
* gnu/packages/cran.scm (r-compare): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus eb60149eee
gnu: Add r-png.
* gnu/packages/image.scm (r-png): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus 5cc79c9c50
gnu: Add r-powerlaw.
* gnu/packages/cran.scm (r-powerlaw): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2856369fad
gnu: Add r-circlize.
* gnu/packages/cran.scm (r-circlize): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4847a62ea9
gnu: Add r-globaloptions.
* gnu/packages/cran.scm (r-globaloptions): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2bdb5c3f78
gnu: Add r-shape.
* gnu/packages/cran.scm (r-shape): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus c69d27db57
gnu: Add r-calibrate.
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 33ce12e293
gnu: Add r-auc.
* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4a007ffafe
gnu: Add r-annotationhub.
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 5f96f30f5d
gnu: Add r-interactivedisplaybase.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17 17:25:46 +02:00
Efraim Flashner a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b.
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17 18:17:00 +03:00
Efraim Flashner aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures.
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
2017-08-17 18:16:57 +03:00
Nicolas Goaziou 721e1987d0
gnu: Add mgba.
* gnu/packages/games.scm (mgba): New public variable.
2017-08-17 10:56:04 +02:00
Ricardo Wurmus a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17 09:12:46 +02:00
Efraim Flashner e3b861ce38
gnu: python-cython: Update to 0.26.
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
Danny Milosavljevic d6ef422fe7
gnu: Add fbreader.
* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17 02:00:51 +02:00
Danny Milosavljevic 84a52639c9
gnu: Add liblinebreak.
* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-17 01:56:38 +02:00
Tobias Geerinckx-Rice f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3.
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16 22:35:11 +02:00
Tobias Geerinckx-Rice f37995fa20
gnu: python-cryptography: Update to 2.0.3.
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice f886e7cab1
gnu: limnoria: Update to 2017.08.03.
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice e2a4c13023
gnu: cbatticon: Update to 1.6.6.
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16 22:35:10 +02:00
Julien Lepiller f207984985
gnu: Add gpick.
* gnu/packages/image.scm (gpick): New variable.
2017-08-16 21:37:33 +03:00
ng0 d0b13d7b9b
gnu: fossil: Update to 2.2.
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
2017-08-16 21:37:32 +03:00
Efraim Flashner ab1bd285db
gnu: connman: Update to 1.35.
* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16 21:37:29 +03:00
Kei Kebreau e664200c0c
gnu: Add ltris.
* gnu/packages/games.scm (ltris): New variable.
2017-08-16 11:28:12 -04:00
Alex Vong af4db693db
gnu: Add ghc-gitrev.
* gnu/packages/haskell.scm (ghc-gitrev): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong e0ca14c7a8
gnu: Add ghc-geniplate-mirror.
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 298af2a8da
gnu: Add ghc-monadplus.
* gnu/packages/haskell.scm (ghc-monadplus): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 005a08e3dc
gnu: Add ghc-fail.
* gnu/packages/haskell.scm (ghc-fail): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 1eced2a7a8
gnu: Add ghc-edisoncore.
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 212ae09541
gnu: Add ghc-edisonapi.
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong a623fd7fed
gnu: Add ghc-murmur-hash.
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
Alex Vong ca48a34594
gnu: Add ghc-data-hash.
* gnu/packages/haskell.scm (ghc-data-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
Efraim Flashner adcb30642c
gnu: pspp: Update to 0.11.0.
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
Alex Vong 96f23b62e0
gnu: Add ghc-equivalence.
* gnu/packages/haskell.scm (ghc-equivalence): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
Alex Vong 3f8b8e731c
gnu: Add ghc-boxes.
* gnu/packages/haskell.scm (ghc-boxes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
Alex Vong be04f8020a
gnu: Add ghc-edit-distance.
* gnu/packages/haskell.scm (ghc-edit-distance): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
Alex Vong 867ed9776c
gnu: Add ghc-stmonadtrans.
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
Alex Vong f99a57dc28
gnu: Add ghc-strict.
* gnu/packages/haskell.scm (ghc-strict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
Alex Vong c12562e1e8
gnu: cpphs: Update to 1.20.8.
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:08 +02:00
ng0 2f7966c8e2
gnu: font-google-noto: Use font-build-system.
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:18:50 +02:00
Efraim Flashner d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf.
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
2017-08-16 12:36:25 +03:00
Efraim Flashner 953a12fa9b
gnu: hdf4: Fix building on aarch64.
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
Leo Famulari 8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input.
This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.

* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10): Remove variable.
2017-08-15 17:59:22 -04:00
Danny Milosavljevic 2434f5cedf
gnu: Add dssi.
* gnu/packages/music.scm (dssi): New variable.
2017-08-15 20:58:03 +02:00
Oleg Pykhalov 425d66f7a7
gnu: Add emacs-highlight-symbol.
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:52:58 +02:00
ng0 be69176bbd
gnu: fish-guix: Use new download URL.
* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:41:23 +02:00
Marius Bakke dca82aefbc
gnu: p11-kit: Update to 0.23.8.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
2017-08-15 20:38:02 +02:00
Leo Famulari 6550e5ad64
gnu: signify: Update to 22.
* gnu/packages/crypto.scm (signify): Update to 22.
2017-08-15 13:27:30 -04:00
Ben Woodcroft 06f31e50b1
gnu: diamond: Update to 0.9.10.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
2017-08-15 18:49:33 +10:00
Efraim Flashner 3837108e40
gnu: bcftools: Fix building on aarch64.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
Mark H Weaver 09ec5a0f0c
Merge branch 'master' into core-updates 2017-08-15 03:10:14 -04:00
Efraim Flashner 2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
This FTBFS on x86_64 and i686.

This reverts commit f4c808df5b.
2017-08-15 10:03:40 +03:00
Tobias Geerinckx-Rice 14f366e58d
gnu: youtube-dl: Update to 2017.08.13.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
2017-08-15 01:42:49 +02:00
Marius Bakke f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
Leo Famulari 15428168ea
gnu: cvs: Fix CVE-2017-12836.
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
Marius Bakke 36bfcf7e3a
gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117].
...also disable tests, since they broke after c9f4f56b24.

* gnu/packages/version-control.scm (git@2.10): Update to 2.10.4.
[arguments]: New field.
2017-08-14 21:44:24 +02:00
Efraim Flashner 2bccf1c0ec
gnu: gcc@7: Update to 7.2.0.
* gnu/packages/gcc.scm (gcc@7): Update to 7.2.0.
[source]: Switch to xz compression.
2017-08-14 22:30:07 +03:00
Marius Bakke a547a6d560
Revert "gnu: e2fsprogs: Update to 1.43.5."
Fails to build on i686:
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00118.html>

This reverts commit 3ddaa7922b.
2017-08-14 21:22:12 +02:00
Kei Kebreau 1faf081b47
gnu: milkytracker: Update to 1.01.00.
* gnu/packages/music.scm (milkytracker): Update to 1.01.00.
2017-08-14 14:26:15 -04:00
Ricardo Wurmus 9634804890
gnu: Add bismark.
* gnu/packages/bioinformatics.scm (bismark): New variable.
2017-08-14 12:00:56 +02:00
Ricardo Wurmus 86763fdd70
gnu: Add r-dexseq.
* gnu/packages/bioinformatics.scm (r-dexseq): New variable.
2017-08-14 12:00:51 +02:00
Ricardo Wurmus 233f4f43bf
gnu: Add perl-math-random-secure.
* gnu/packages/crypto.scm (perl-math-random-secure): New variable.
2017-08-14 11:50:42 +02:00
Ricardo Wurmus 2023b79f59
gnu: Add perl-crypt-random-source.
* gnu/packages/crypto.scm (perl-crypt-random-source): New variable.
2017-08-14 11:50:13 +02:00
Ricardo Wurmus 2bdc07c2a5
gnu: Add perl-type-tiny.
* gnu/packages/perl.scm (perl-type-tiny): New variable.
2017-08-14 11:46:23 +02:00
Ricardo Wurmus a0eb3104a9
gnu: Add perl-ref-util-xs.
* gnu/packages/perl.scm (perl-ref-util-xs): New variable.
2017-08-14 11:46:14 +02:00
Ricardo Wurmus 44d37e43fe
gnu: Add perl-regexp-util.
* gnu/packages/perl.scm (perl-regexp-util): New variable.
2017-08-14 11:46:04 +02:00
Ricardo Wurmus 413dd21084
gnu: Add perl-type-tie.
* gnu/packages/perl.scm (perl-type-tie): New variable.
2017-08-14 11:45:56 +02:00
Ricardo Wurmus 649238cbc7
gnu: Add perl-math-random-isaac.
* gnu/packages/crypto.scm (perl-math-random-isaac): New variable.
2017-08-14 11:45:20 +02:00
Ricardo Wurmus d96e162aa9
gnu: Add perl-math-random-isaac-xs.
* gnu/packages/crypto.scm (perl-math-random-isaac-xs): New variable.
2017-08-14 11:44:15 +02:00
Ricardo Wurmus 2fa2179135
gnu: Add perl-hash-fieldhash.
* gnu/packages/perl.scm (perl-hash-fieldhash): New variable.
2017-08-14 11:37:08 +02:00
Arun Isaac 28fd275caf
gnu: arandr: Use absolute path for xrandr.
* gnu/packages/xdisorg.scm (arandr)[arguments]: Add configure phase.
2017-08-14 10:01:40 +02:00
Mark H Weaver 9031d26aeb
gnu: linux-libre: Update to 4.12.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.7.
(%linux-libre-hash): Update hash.
2017-08-14 03:33:09 -04:00
Mark H Weaver e96b4378a2
gnu: linux-libre@4.9: Update to 4.9.43.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.43.
2017-08-14 03:32:26 -04:00
Mark H Weaver 7aee6a311b
gnu: linux-libre@4.4: Update to 4.4.82.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.82.
2017-08-14 03:31:29 -04:00
Andy Wingo 3bfa7af417
gnu: libreoffice: Install .desktop files.
* gnu/packages/libreoffice.scm (libreoffice): Add phase to install .desktop
files to $out/share so that LibreOffice will show up in Gnome/KDE/etc and so
that it is associated with the various MIME types of interest.
2017-08-14 09:11:22 +02:00
Kei Kebreau ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1.
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
2017-08-13 18:18:27 -04:00
ng0 be6e2c3018
gnu: Update open-adventure to d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.
* gnu/packages/games.scm (open-adventure): Update to
d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:39:47 -04:00
ng0 05af41a181
gnu: linenoise: Update to commit 2105ce445821381cf1bca87b6d386d4ea88ee20d.
* gnu/packages/shells.scm (linenoise): Update to commit
2105ce445821381cf1bca87b6d386d4ea88ee20d. Fix indentation.
[source]: change to git.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:29:45 -04:00
Alex Vong f152208b0d
gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-13 18:28:27 +02:00
Marius Bakke d5daf6fbe0
gnu: curl: Fix i686 test failure.
* gnu/packages/patches/curl-bounds-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
2017-08-13 16:46:41 +02:00
Marius Bakke 9766082045
gnu: imagemagick: Update to 6.9.9-7.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-7.
2017-08-13 15:14:03 +02:00
Oleg Pykhalov f7e8302b4e
gnu: Add emacs-nix-mode.
* gnu/packages/emacs.scm (emacs-nix-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-13 13:20:30 +05:30
Efraim Flashner f4c808df5b
gnu: pspp: Update to 0.11.0.
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-13 10:16:17 +03:00
Christopher Baines c0761f2e7e
gnu: moreutils: Add more inputs to moreutils.
The included ts command requires the Time::Duration and Date::Parse perl
modules for the -r option.

* gnu/packages/moreutils.scm (moreutils)[inputs]: Add perl-timedate and
  perl-time-duration.
  [arguments]: Wrap ts with PERL5LIB.
2017-08-12 22:09:50 +01:00
Efraim Flashner 861fd04baf
gnu: efl: Don't include gtk+@3 in enclosure.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Replace
libinput with libinput-minimal.
2017-08-12 23:10:38 +03:00
Efraim Flashner 9be481f8b9
gnu: efl: Update to 1.20.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.2.
2017-08-12 23:10:36 +03:00
Mark H Weaver f814379463
gnu: linux-libre: Update to 4.12.6.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.6.
(%linux-libre-hash): Update hash.
2017-08-12 15:52:29 -04:00
Mark H Weaver 5a8fc7de66
gnu: linux-libre@4.9: Update to 4.9.42.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.42.
2017-08-12 15:51:47 -04:00
Mark H Weaver 7d7c84a7bf
gnu: linux-libre@4.4: Update to 4.4.81.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.81.
2017-08-12 15:51:00 -04:00
Danny Milosavljevic 462ae6f612
gnu: python-pylint: Use Python2 variant system.
* gnu/packages/python.scm (python-pylint): Use Python2 variant system.
(python2-pylint): Strip Python2 variant system.
2017-08-12 16:30:16 +02:00
Alex Vong bfcdf88760
gnu: catdoc: Fix CVE-2017-11110.
* gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (catdoc)[source]: Use it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-12 15:30:23 +02:00
Marius Bakke 3ddaa7922b
gnu: e2fsprogs: Update to 1.43.5.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
2017-08-12 14:07:41 +02:00
Marius Bakke f1f2da6bce
gnu: feh: Update to 2.19.2.
* gnu/packages/image-viewers.scm (feh): Update to 2.19.2.
2017-08-12 13:59:14 +02:00
Tobias Geerinckx-Rice 3f09b46d93
gnu: dub: Update to 1.4.1.
* gnu/packages/ldc.scm (dub): Update to 1.4.1.
2017-08-11 16:46:00 +02:00
Andy Wingo f7fc9667b2
gnu: Add cloc.
* gnu/packages/code.scm (cloc): New public variable.
2017-08-11 10:38:30 +02:00
Mark H Weaver 3785e42e52
Merge branch 'master' into core-updates 2017-08-11 03:49:24 -04:00
Leo Famulari d373c16f33
gnu: imagemagick: Update to 6.9.9-5.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-5.
2017-08-10 20:12:47 -04:00
Tobias Geerinckx-Rice 1c865bfce5
gnu: mksh: Update to 56.
* gnu/packages/shells.scm (mksh): Update to 56.
2017-08-11 01:02:12 +02:00
Tobias Geerinckx-Rice eec0c587af
gnu: ruby-debug-inspector: Update to 0.0.3.
* gnu/packages/ruby.scm (ruby-debug-inspector): Update to 0.0.3.
2017-08-11 00:21:00 +02:00
Tobias Geerinckx-Rice c3b36fa161
gnu: ruby-listen: Update to 3.1.5.
* gnu/packages/ruby.scm (ruby-listen): Update to 3.1.5.
2017-08-11 00:20:59 +02:00
Tobias Geerinckx-Rice 98ff58a53d
gnu: ruby-introspection: Update to 0.0.4.
* gnu/packages/ruby.scm (ruby-introspection): Update to 0.0.4.
2017-08-11 00:20:59 +02:00
Tobias Geerinckx-Rice a88f24d860
gnu: ruby-simplecov-html: Update to 0.10.1.
* gnu/packages/ruby.scm (ruby-simplecov-html): Update to 0.10.1.
2017-08-11 00:20:58 +02:00
Tobias Geerinckx-Rice ba074a85d0
gnu: ruby-net-http-digest-auth: Update to 1.4.1.
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): Update to 1.4.1.
2017-08-11 00:20:57 +02:00
Tobias Geerinckx-Rice 12313cd071
gnu: ruby-nenv: Update to 0.3.0.
* gnu/packages/ruby.scm (ruby-nenv): Update to 0.3.0.
2017-08-11 00:20:57 +02:00
Tobias Geerinckx-Rice aeb4e61e75
gnu: ruby-rjb: Update to 1.5.5.
* gnu/packages/ruby.scm (ruby-rjb): Update to 1.5.5.
2017-08-11 00:20:56 +02:00
Tobias Geerinckx-Rice acbc506218
gnu: ruby-libxml: Update to 3.0.0.
* gnu/packages/ruby.scm (ruby-libxml): Update to 3.0.0.
2017-08-11 00:20:55 +02:00
Tobias Geerinckx-Rice 6f9652b0a1
gnu: ruby-minitest-bacon: Update to 1.0.3.
* gnu/packages/ruby.scm (ruby-minitest-bacon): Update to 1.0.3.
2017-08-11 00:20:55 +02:00
Tobias Geerinckx-Rice fbefd6ffbf
gnu: ruby-tins: Update to 1.15.0.
* gnu/packages/ruby.scm (ruby-tins): Update to 1.15.0.
2017-08-11 00:20:54 +02:00
Tobias Geerinckx-Rice ceaff59ec7
gnu: ruby-git: Update to 1.3.0.
* gnu/packages/ruby.scm (ruby-git): Update to 1.3.0.
2017-08-11 00:20:53 +02:00
Tobias Geerinckx-Rice c9e261b7eb
gnu: ruby-minitest-bonus-assertions: Update to 3.0.
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): Update to 3.0.
2017-08-11 00:20:52 +02:00
Tobias Geerinckx-Rice d21c6686d0
gnu: ruby-minitest-hooks: Update to 1.4.1.
* gnu/packages/ruby.scm (ruby-minitest-hooks): Update to 1.4.1.
2017-08-11 00:20:52 +02:00
Tobias Geerinckx-Rice d74d96e466
gnu: ruby-test-unit: Update to 3.2.5.
* gnu/packages/ruby.scm (ruby-test-unit): Update to 3.2.5.
2017-08-11 00:20:51 +02:00
Tobias Geerinckx-Rice 2e8cd8624d
gnu: ruby-thor: Update to 0.19.4.
* gnu/packages/ruby.scm (ruby-thor): Update to 0.19.4.
2017-08-11 00:20:50 +02:00
Tobias Geerinckx-Rice 1d60c436aa
gnu: ruby-packnga: Update to 1.0.4.
* gnu/packages/ruby.scm (ruby-packnga): Update to 1.0.4.
2017-08-11 00:20:50 +02:00
Tobias Geerinckx-Rice e32dfb7405
gnu: ruby-lumberjack: Update to 1.0.12.
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.12.
2017-08-11 00:20:49 +02:00
Tobias Geerinckx-Rice 185ea4465d
gnu: ruby-net-http-persistent: Update to 3.0.0.
* gnu/packages/ruby.scm (ruby-net-http-persistent): Update to 3.0.0.
2017-08-11 00:20:48 +02:00
Tobias Geerinckx-Rice 04de0cb5a0
gnu: ruby-mail: Update to 2.6.6.
* gnu/packages/ruby.scm (ruby-mail): Update to 2.6.6.
2017-08-11 00:20:48 +02:00
Tobias Geerinckx-Rice 263c0dbf00
gnu: ruby-ox: Update to 2.6.0.
* gnu/packages/ruby.scm (ruby-ox): Update to 2.6.0.
2017-08-11 00:20:47 +02:00
Tobias Geerinckx-Rice 2a91494ed1
gnu: ruby-redcloth: Update to 4.3.2.
* gnu/packages/ruby.scm (ruby-redcloth): Update to 4.3.2.
2017-08-11 00:20:46 +02:00
Tobias Geerinckx-Rice a3179a7338
gnu: ruby-connection-pool: Update to 2.2.1.
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.1.
2017-08-11 00:20:46 +02:00
Tobias Geerinckx-Rice 56822223c1
gnu: ruby-fivemat: Update to 1.3.5.
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.5.
2017-08-11 00:20:45 +02:00
Tobias Geerinckx-Rice 8d10918a43
gnu: ruby-daemons: Update to 1.2.4.
* gnu/packages/ruby.scm (ruby-daemons): Update to 1.2.4.
2017-08-11 00:20:44 +02:00
Tobias Geerinckx-Rice e2fcef3913
gnu: ruby-diff-lcs: Update to 1.3.
* gnu/packages/ruby.scm (ruby-diff-lcs): Update to 1.3.
2017-08-11 00:20:44 +02:00
Tobias Geerinckx-Rice 313dd5ddc0
gnu: ruby-thread-safe: Update to 0.3.6.
* gnu/packages/ruby.scm (ruby-thread-safe): Update to 0.3.6.
2017-08-11 00:20:43 +02:00
Tobias Geerinckx-Rice 884a80dd0a
gnu: ruby-pkg-config: Update to 1.2.5.
* gnu/packages/ruby.scm (ruby-pkg-config): Update to 1.2.5.
2017-08-11 00:20:43 +02:00
Tobias Geerinckx-Rice 30caad5080
gnu: ruby-eventmachine: Update to 1.2.5.
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.5.
2017-08-11 00:20:42 +02:00
Tobias Geerinckx-Rice f3a6311af4
gnu: ruby-term-ansicolor: Update to 1.6.0.
* gnu/packages/ruby.scm (ruby-term-ansicolor): Update to 1.6.0.
2017-08-11 00:20:41 +02:00
Tobias Geerinckx-Rice 0cd7b8164d
gnu: ruby-rake-compiler: Update to 1.0.4.
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.4.
2017-08-11 00:20:40 +02:00
Tobias Geerinckx-Rice 3b0e45c86d
gnu: ruby-useragent: Update to 0.16.8.
* gnu/packages/ruby.scm (ruby-useragent): Update to 0.16.8.
2017-08-11 00:20:40 +02:00
Tobias Geerinckx-Rice 5620bd456f
gnu: ruby-domain-name: Update to 0.5.20170404.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20170404.
2017-08-11 00:20:39 +02:00
Tobias Geerinckx-Rice a7ca218cd5
gnu: ruby-notiffany: Update to 0.1.1.
* gnu/packages/ruby.scm (ruby-notiffany): Update to 0.1.1.
2017-08-11 00:20:39 +02:00
Tobias Geerinckx-Rice d5489a618d
gnu: ruby-byebug: Update to 9.0.6.
* gnu/packages/ruby.scm (ruby-byebug): Update to 9.0.6.
2017-08-11 00:20:38 +02:00
Tobias Geerinckx-Rice 65a7f09ce0
gnu: ruby-sequel: Update to 4.49.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.49.0.
2017-08-11 00:20:38 +02:00
Tobias Geerinckx-Rice d1c1f36803
gnu: ruby-shoulda-matchers: Update to 3.1.2.
* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.2.
2017-08-11 00:20:37 +02:00
Tobias Geerinckx-Rice 8e5ff25042
gnu: ruby-arel: Update to 8.0.0.
* gnu/packages/ruby.scm (ruby-arel): Update to 8.0.0.
2017-08-11 00:20:37 +02:00
Tobias Geerinckx-Rice 56ccada3c1
gnu: ruby-rb-fsevent: Update to 0.10.2.
* gnu/packages/ruby.scm (ruby-rb-fsevent): Update to 0.10.2.
2017-08-11 00:20:36 +02:00
Tobias Geerinckx-Rice cd698b6e20
gnu: ruby-utils: Update to 0.9.0.
* gnu/packages/ruby.scm (ruby-utils): Update to 0.9.0.
2017-08-11 00:20:35 +02:00
Tobias Geerinckx-Rice e322222ab4
gnu: ruby-tzinfo: Update to 1.2.3.
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.3.
2017-08-11 00:20:35 +02:00
Tobias Geerinckx-Rice 32bbfea811
gnu: ruby-rb-inotify: Update to 0.9.10.
* gnu/packages/ruby.scm (ruby-rb-inotify): Update to 0.9.10.
2017-08-11 00:20:34 +02:00
Tobias Geerinckx-Rice 8929f0a481
gnu: ruby-gherkin: Update to 4.1.3.
* gnu/packages/ruby.scm (ruby-gherkin): Update to 4.1.3.
2017-08-11 00:20:33 +02:00
Tobias Geerinckx-Rice 3d4a5eb555
gnu: ruby-timecop: Update to 0.9.1.
* gnu/packages/ruby.scm (ruby-timecop): Update to 0.9.1.
2017-08-11 00:20:33 +02:00
Tobias Geerinckx-Rice 483846ac6f
gnu: ruby-minitest: Update to 5.10.3.
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.3.
2017-08-11 00:20:32 +02:00
Tobias Geerinckx-Rice 5ca48923f5
gnu: ruby-redcarpet: Update to 3.4.0.
* gnu/packages/ruby.scm (ruby-redcarpet): Update to 3.4.0.
2017-08-11 00:20:32 +02:00
Tobias Geerinckx-Rice dc97df2ef4
gnu: ruby-cucumber-core: Update to 2.0.0.
* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 2.0.0.
2017-08-11 00:20:31 +02:00
Tobias Geerinckx-Rice ce5f523001
gnu: ruby-pg: Update to 0.21.0.
* gnu/packages/ruby.scm (ruby-pg): Update to 0.21.0.
2017-08-11 00:20:30 +02:00
Tobias Geerinckx-Rice d14e5eaa19
gnu: ruby-slop: Update to 4.5.0.
* gnu/packages/ruby.scm (ruby-slop): Update to 4.5.0.
2017-08-11 00:20:29 +02:00
Marius Bakke c2f93e9c07
gnu: openjpeg: Update to 2.2.0 [security fixes].
In addition to the patches we already had (which are not mentioned in the
ChangeLog, but verified by following their respective GitHub issues) this
release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158,
CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628.

See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details.

* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch,
  gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.2.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch
hard-coded openjpeg-2.1 path.
2017-08-10 22:23:31 +02:00
Marius Bakke 1a1558e88f
gnu: postgresql: Update to 9.6.4 [fixes CVE-2017-{7546,7547,7548}].
See <https://www.postgresql.org/about/news/1772/> for more information.

* gnu/packages/databases.scm (postgresql): Update to 9.6.4.
2017-08-10 22:23:31 +02:00
Leo Famulari 1e07daa27a
gnu: mercurial: Update to 4.2.3 [fixes CVE-2017-1000116].
* gnu/packages/version-control.scm (mercurial): Update to 4.2.3.
2017-08-10 15:02:04 -04:00
Leo Famulari 38f8a882ab
gnu: git: Update to 2.14.1 [fixes CVE-2017-1000117].
* gnu/packages/version-control.scm (git): Update to 2.14.1.
2017-08-10 15:02:04 -04:00
Leo Famulari 5993f7c455
gnu: subversion: Update to 1.8.19 [fixes CVE-2017-9800].
* gnu/packages/version-control.scm (subversion): Update to 1.8.19.
[source]: Add alternate URL.
2017-08-10 15:02:04 -04:00
Oleg Pykhalov f262f44683
gnu: Add emacs-engine-mode.
* gnu/packages/emacs.scm (emacs-engine-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 22:25:25 +05:30
Leo Famulari 783daa4982
gnu: libsoup: Update to 2.58.2 (fixes CVE-2017-2885).
* gnu/packages/gnome.scm (libsoup): Update to 2.58.2.
2017-08-10 12:25:31 -04:00
Tobias Geerinckx-Rice ddde3f6be1
gnu: catimg: Update to 2.4.0.
* gnu/packages/image-viewers.scm (catimg): Update to 2.4.0.
2017-08-10 17:26:08 +02:00
Tobias Geerinckx-Rice 226685faa5
gnu: cppcheck: Update to 1.80.
* gnu/packages/check.scm (cppcheck): Update to 1.80.
2017-08-10 17:26:07 +02:00
Tobias Geerinckx-Rice c63b83a40f
gnu: vdirsyncer: Update to 0.16.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.1.
2017-08-10 17:26:07 +02:00
Ben Woodcroft 37b08547e4
gnu: ruby-bio-commandeer: Update to 0.4.0.
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.4.0.
2017-08-10 22:20:38 +10:00
Oleg Pykhalov 27feda65e7
gnu: Add emacs-erc-hl-nicks.
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:55:09 +05:30
Oleg Pykhalov 1ee879e967
gnu: Add emacs-gitpatch.
By the way, “gitpatch.el” says different version than release tarball.
Do I need to ask a developer?
--8<---------------cut here---------------start------------->8---
;; Author: Feng Shu <tumashu@163.com>
;; Homepage: https://github.com/tumashu/gitpatch
;; Keywords: convenience
;; Package-Requires: ((emacs "24.3"))
;; Version: 0.10
--8<---------------cut here---------------end--------------->8---

>From 9eddf07fa401468738c2f48a25e51ddef2a3ceed Mon Sep 17 00:00:00 2001
From: Oleg Pykhalov <go.wigust@gmail.com>
Date: Sat, 29 Jul 2017 14:22:48 +0300
Subject: [PATCH] gnu: Add emacs-gitpatch.

* gnu/packages/emacs.scm (emacs-gitpatch): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:37:17 +05:30
Oleg Pykhalov a88adeb343
gnu: Add emacs-git-messenger.
gnu/packages/emacs.scm (emacs-git-messenger): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 13:27:05 +05:30
Christopher Baines 761f5865c8
gnu: Update tailon to version 1.3.0.
From version 1.1.1.

* gnu/packages/logging.scm (tailon)[version]: Change to 1.3.0.
  [inputs]: Add python-tornado-http-auth.
2017-08-09 23:50:23 +01:00
Christopher Baines c795bc79d9
gnu: Add python-tornado-http-auth.
* gnu/packages/python.scm (python-tornado-http-auth): New variable.
2017-08-09 23:50:10 +01:00
Marius Bakke d156c999d0
Merge branch 'master' into core-updates 2017-08-10 00:18:36 +02:00
Marius Bakke 4c6c683862
gnu: nmap: Update to 7.60.
* gnu/packages/admin.scm (nmap): Update to 7.60.
2017-08-10 00:15:35 +02:00
Marius Bakke 79d9525071
gnu: curl: Update replacement to 7.55.0. [security fixes]
Fixes CVE-2017-1000099, CVE-2017-1000100, and CVE-2017-100101.
See <https://curl.haxx.se/docs/security.html> for details.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.55.0.
(curl-7.54.1): Rename to ...
(curl-7.55.0): ... this.
[source]: Update source URI to match upstream compression method change.
[arguments]: Add 'fix-Makefile' phase.
2017-08-10 00:15:35 +02:00
Marius Bakke 2e8c61fcf0
gnu: samba: Update to 4.6.7.
* gnu/packages/samba.scm (samba): Update to 4.6.7.
2017-08-10 00:15:34 +02:00
Mark H Weaver cc294bcee6
Merge branch 'master' into core-updates 2017-08-09 17:25:31 -04:00
Leo Famulari ae7f246cf1
gnu: python-nbformat: Update to 4.3.0.
* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0.
2017-08-09 16:52:51 -04:00
Leo Famulari 10756b9ed1
gnu: gnupg: Update to 2.1.23.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23.
[arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now
the default.
2017-08-09 16:01:33 -04:00
Ricardo Wurmus 1b22ecdac4
gnu: r-wgcna: Update to 1.61.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61.
[propagated-inputs]: Add r-rcpp, r-robust, r-survival.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus c5f744a68d
gnu: Add r-robust.
* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 5d0afe8849
gnu: Add r-fit-models.
* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0bae5fd6a7
gnu: Add r-rrcov.
* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 23841b2573
gnu: Add r-pcapp.
* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0ecd065839
gnu: r-gdtools: Update to 0.1.5.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
Ricardo Wurmus c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
Mark H Weaver ea0277abcd
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802,
CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for
CVE-2017-7779.
2017-08-09 13:16:52 -04:00
Mark H Weaver 12025fb9b0
gnu: icecat: Rename patches to reflect CVE assignments.
Document that our existing patches include fixes for CVE-2017-7753,
CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792,
CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23
changesets for CVE-2017-7779.

* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-08-09 13:16:43 -04:00
ng0 28e12d6c81
gnu: gnurl: Update to 7.55.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-09 18:16:51 +02:00
Tobias Geerinckx-Rice a4afc536f9
gnu: virt-manager: Update to 1.4.2.
* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2.
2017-08-09 16:45:32 +02:00
Tobias Geerinckx-Rice 448052b713
gnu: libgdata: Disable failing tests.
* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’
phase.
2017-08-09 16:31:06 +02:00
Ricardo Wurmus 18f5d2a70a
gnu: Add reference to (gnu packages graph).
This is a follow-up to 1738138cb3.
2017-08-09 15:43:35 +02:00
Ricardo Wurmus 1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
Ricardo Wurmus 31476df32e
gnu: Add python-igraph.
* gnu/packages/graph.scm (python-igraph): New variable.
2017-08-09 14:47:47 +02:00
Ricardo Wurmus e57fffad90
gnu: Add igraph.
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
Efraim Flashner ea77385c4c
gnu: viewnior: Don't build icon-theme.cache.
* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
2017-08-09 14:09:43 +03:00
Manolis Ragkousis 2d5bf32b8a
gnu: googletest: Build shared libraries.
* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
  in #:configure-flags.
2017-08-09 13:53:29 +03:00
Manolis Ragkousis c608fe8cf3
gnu: Add ois.
* gnu/packages/game-development.scm (ois): New variable.
2017-08-09 13:53:16 +03:00
Eric Bavier d84b09e937
gnu: dealii: Update to 8.5.0.
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version.  Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
Eric Bavier 05cca6ce90
gnu: stress-make: Patch default shell.
* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
2017-08-09 01:56:53 -05:00
Eric Bavier bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase.  Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
Eric Bavier 2509522c4f
gnu: suitesparse: Use modify-phases.
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
Eric Bavier 9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
Eric Bavier baeaf8821d
gnu: slepc: Update to 3.7.4.
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link.  Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
Eric Bavier 41a46a5035
gnu: petsc: Update to 3.7.6.
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
Tobias Geerinckx-Rice 026051953d
gnu: epiphany: Update to 3.24.3.
* gnu/packages/gnome.scm (epiphany): Update to 3.24.3.
2017-08-09 07:20:57 +02:00
Tobias Geerinckx-Rice c762011e40
gnu: tracker: Update to 1.12.2.
* gnu/packages/gnome.scm (tracker): Update to 1.12.2.
2017-08-09 07:20:56 +02:00
Tobias Geerinckx-Rice 666901b298
gnu: gnome-online-accounts: Update to 3.24.2.
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.2.
2017-08-09 07:20:56 +02:00
Tobias Geerinckx-Rice a51fc34c28
gnu: mutter: Update to 3.24.4.
* gnu/packages/gnome.scm (mutter): Update to 3.24.4.
2017-08-09 07:20:55 +02:00
Tobias Geerinckx-Rice 0d2df50caf
gnu: gedit: Support gspell.
* gnu/packages/gnome.scm (gedit)[arguments]: Remove #:configure-flags.
[inputs]: Add gspell.
2017-08-09 07:20:55 +02:00
Tobias Geerinckx-Rice e3705bb6ea
gnu: gedit: Update to 3.22.1.
* gnu/packages/gnome.scm (gedit): Update to 3.22.1.
2017-08-09 07:20:54 +02:00
Tobias Geerinckx-Rice eccd35be3d
gnu: gspell: Propagate enchant dependency.
* gnu/packages/gnome.scm (gspell)[inputs]: Move enchant from here...
[propagated-inputs]: ...to here.
2017-08-09 07:20:09 +02:00
Tobias Geerinckx-Rice a801ae4cae
gnu: gspell: Order inputs alphabetically.
* gnu/packages/gnome.scm (gspell)[inputs, native-inputs]: Re-order.
2017-08-09 07:20:09 +02:00
Tobias Geerinckx-Rice 9099bedfea
gnu: gnumeric: Update to 1.12.35.
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.35.
2017-08-09 07:20:08 +02:00
Tobias Geerinckx-Rice e2bf423ab4
gnu: brasero: Update to 3.12.2.
* gnu/packages/gnome.scm (brasero): Update to 3.12.2.
2017-08-09 07:20:08 +02:00
Tobias Geerinckx-Rice f032d0be9c
gnu: Use HTTPS for gnome.org and subdomains.
* gnu/packages/fonts.scm (font-bitstream-vera)[home-page]: Use HTTPS.
* gnu/packages/glib.scm (glib)[home-page]: Likewise.
* gnu/packages/gnome.scm (gcr, libgnome-keyring, gnome-keyring, evince)
(gnome-icon-theme, libgsf, gnome-mime-data, vala, vte, python2-rsvg)
(glib-networking, gnome-settings-daemon, libchamplain, grilo, grilo-plugins)
(gjs, zenity, mutter, network-manager, network-manager-applet, gdm)
[home-page]: Likewise.
* gnu/packages/gtk.scm (gtk-engines, murrine)[home-page]: Likewise.
2017-08-09 00:49:41 +02:00
Christopher Baines 9bb47d7df8
gnu: 0ad: Update to 0.0.22-alpha.
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.22-alpha.
2017-08-08 21:24:01 +01:00
Efraim Flashner 65831c6425
gnu: babl: Update to 0.1.28.
* gnu/packages/gimp.scm (babl): Update to 0.1.28.
2017-08-08 18:43:07 +03:00
Efraim Flashner 3616ff51b3
gnu: gegl: Use 'modify-phases' syntax.
* gnu/packages/gimp.scm (gegl)[arguments]: Use the 'modify-phases' syntax.
2017-08-08 18:43:05 +03:00
Efraim Flashner b0a21b56db
gnu: gegl: Fix building on aarch64.
* gnu/packages/gimp.scm (gegl)[arguments]: Add '-lm' configure-flag.
2017-08-08 18:43:03 +03:00
Ben Woodcroft cc36165efa
gnu: ruby-activesupport: Update to 5.1.3.
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.3.
2017-08-08 21:54:20 +10:00
Tobias Geerinckx-Rice b998781d24
gnu: pciutils: Update to 3.5.5.
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.5.
2017-08-08 05:23:38 +02:00
Tobias Geerinckx-Rice a40af5d0ad
gnu: hunspell: Update to 1.6.1.
* gnu/packages/libreoffice.scm (hunspell): Update to 1.6.1.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Add ‘bootstrap’ phase.
2017-08-08 05:23:37 +02:00
Tobias Geerinckx-Rice fc3560fff1
gnu: hunspell: Update home page.
* gnu/packages/libreoffice.scm (hunspell)[home-page]: Update it.
2017-08-08 05:23:37 +02:00
Tobias Geerinckx-Rice 625761a502
gnu: aspell-dict-en: Update to 2017.01.22-0.
Add missing copyright line for 2016.

* gnu/packages/aspell.scm (aspell-dict-en): Update to 2017.01.22-0.
2017-08-08 05:23:37 +02:00
Tobias Geerinckx-Rice d459524713
gnu: moreutils: Update to 0.61.
* gnu/packages/moreutils.scm (moreutils): Update to 0.61.
2017-08-08 05:23:36 +02:00
Tobias Geerinckx-Rice 7fae2063f8
gnu: sudo: Use ‘modify-phases’ syntax.
* gnu/packages/admin.scm (sudo)[arguments]: Use ‘modify-phases’.
2017-08-08 05:23:36 +02:00
Mark H Weaver 4f4134c26d
gnu: linux-libre: Update to 4.12.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.5.
(%linux-libre-hash): Update hash.
2017-08-07 21:33:03 -04:00
Mark H Weaver 99ccc74725
gnu: linux-libre@4.9: Update to 4.9.41.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.41.
2017-08-07 21:32:13 -04:00
Mark H Weaver c56b08b1e5
gnu: linux-libre@4.4: Update to 4.4.80.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.80.
2017-08-07 21:31:36 -04:00
Mark H Weaver c36e27d504
gnu: linux-libre@4.1: Update to 4.1.43.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.43.
2017-08-07 21:30:47 -04:00
Ben Woodcroft 63755fcd65
gnu: ruby-puma: Update to 3.9.1.
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
Ben Woodcroft 5b0c223ae3
gnu: ruby-nokogiri-diff: Update to 0.2.0-1.a38491e4.
* gnu/packages/ruby.scm (ruby-nokogiri-diff): Update to 0.2.0-1.a38491e4.
2017-08-08 09:30:44 +10:00
Ben Woodcroft 5071f17b29
gnu: ruby-tdiff: Update to 0.3.3-1.b662a604.
* gnu/packages/ruby.scm: Update to 0.3.3-1.b662a604
2017-08-08 09:30:40 +10:00
Ben Woodcroft e7ea30d59a
ruby: Replace with ruby-2.4.1.
* gnu/packages/ruby.scm (ruby-2.4.1): New variable.
(ruby)[replacement]: New field.
2017-08-08 09:30:02 +10:00
Mark H Weaver 2d9495da23
Merge branch 'master' into core-updates 2017-08-07 16:45:16 -04:00
Efraim Flashner 57e96e48b1
gnu: propeller-gcc-4: Don't build on aarch64-linux.
* gnu/packages/embedded.scm (propeller-gcc-4)[supported-system]: New field.
2017-08-07 17:02:24 +03:00
Efraim Flashner 6eed26443f
gnu: nim: Update to 0.17.0.
* gnu/packages/nim.scm (nim): Update to 0.17.0.
[source, home-page]: Use https.
[arguments]: Patch more shebangs, use custom build phase.
2017-08-07 13:37:28 +03:00
Leo Famulari c97fbf55e7
gnu: texlive: Remove texlive-minimal.
This package is superseded by the modular TeX Live distribution.

* gnu/packages/tex.scm (texlive-minimal, texlive-texmf-minimal): Remove
variables.
2017-08-07 12:29:20 +02:00
Leo Famulari 1335167a3b
gnu: biber: Update to 2.7.
* gnu/packages/tex.scm (biber)[name]: Rename to 'biber'.
(biber-2.5): Remove variable.
2017-08-07 12:08:58 +02:00
Leo Famulari 149f668821
gnu: texlive: Update to 2017.
* gnu/packages/tex.scm (texlive, texlive-texmf): Update to 2017.
(texlive-texmf-src): Update to 20170524. Remove
'texlive-texmf-CVE-2016-10243.patch'.
(texlive-bin, texlive-extra-src): Update to 20170524.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 12:08:03 +02:00
Marius Bakke 83fef82b7c
gnu: cubicle: Fix evaluation.
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
Efraim Flashner cda20ee816
gnu: vapoursynth: Don't build on aarch64-linux.
* gnu/packages/video.scm (vapoursynth)[supported-systems]: Remove
aarch64-linux from the supported-systems.
2017-08-07 07:24:17 +03:00
Tobias Geerinckx-Rice 74033bbcc3
gnu: youtube-dl: Update to 2017.08.06.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.06.
2017-08-07 05:28:34 +02:00
Tobias Geerinckx-Rice d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
Tobias Geerinckx-Rice 8bad0c0bbb
gnu: ntfs-3g: Use HTTPS for the home page as well.
* gnu/packages/linux.scm (ntfs-3g)[home-page]: Use HTTPS.
2017-08-07 02:01:33 +02:00
Tobias Geerinckx-Rice ea94aff7da
gnu: wimlib: Update to 1.12.0.
* gnu/packages/backup.scm (wimlib): Update to 1.12.0.
2017-08-07 02:01:32 +02:00
Tobias Geerinckx-Rice 9d217d277e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Restore original hash.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Restore hash from before the tarball changed in place.  It changed back.

This reverts commit fd40857938.
2017-08-07 01:58:39 +02:00
Leo Famulari 46f3c8f289
gnu: khal: Don't propagate vdirsyncer.
* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move vdirsyncer ...
[native-inputs]: ... here.
2017-08-06 16:58:03 -04:00
Leo Famulari fd8f946379
gnu: python-icalendar: Update to 3.11.6.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.6.
2017-08-06 16:58:02 -04:00
Leo Famulari 03776ebd36
gnu: mpg123: Update to 1.25.4.
* gnu/packages/mp3.scm (mpg123): Update to 1.25.4.
2017-08-06 16:58:02 -04:00
Kei Kebreau b0c95908c0
gnu: freedoom: Update to 0.11.3.
* gnu/packages/games.scm (freedoom): Update to 0.11.3.
[arguments]: Remove unnecessary "no" phase.
2017-08-06 14:13:07 -04:00
Kei Kebreau f7b60fdc36
gnu: deutex: Update to 5.0.0.
* gnu/packages/game-development.scm (deutex): Update to 5.0.0.
[source]: Change upstream URI.
[arguments]: Enable tests and restore normal "configure" and "install"
phases.
[native-inputs]: Add asciidoc.
2017-08-06 14:13:07 -04:00
Efraim Flashner 403097d26d
gnu: Add motti.
* gnu/packages/motti.scm (motti): New variable.
2017-08-06 19:13:33 +03:00
Efraim Flashner b7ac10e6da
gnu: keepassx: Superseded by keepassxc.
* gnu/packages/password-utils.scm (keepassx)[properties]: New field.
2017-08-06 19:13:32 +03:00
Efraim Flashner 99672f7b1d
gnu: Add keepassxc.
* gnu/packages/password-utils.scm (keepassxc): New variable.
2017-08-06 19:13:06 +03:00
Efraim Flashner 3ea2eaa8f3
gnu: python-efl: Update to 1.20.0.
* gnu/packages/enlightenment.scm (python-efl): Update to 1.20.0.
[source]: Add alternate source uri.
[arguments]: Enable tests.
2017-08-06 18:13:09 +03:00
Efraim Flashner 87cd1f5c2a
gnu: efl: Update to 1.20.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.1.
2017-08-06 18:13:05 +03:00
Efraim Flashner 3bfee8ff02
gnu: make-u-boot-package: Don't unnecessarily cross-compile.
* gnu/packages/bootloaders.scm (make-u-boot-package)[native-inputs]: Only
use cross-gcc and cross-binutils if compiling for a different
architecture.
[arguments]: Only use cross compiling make-flags if cross compiling.
2017-08-06 18:13:03 +03:00
Danny Milosavljevic 18c6a7b4c8
gnu: Add python-flask-httpauth.
* gnu/packages/python.scm (python-flask-httpauth, python2-flask-httpauth):
New variables.
2017-08-06 13:35:07 +02:00
ng0 abd8825f90
gnu: Add font-open-dyslexic.
* gnu/packages/fonts.scm (font-open-dyslexic): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:49:52 +05:30
Vasile Dumitrascu 799097e445
gnu: gnucash: Update to 2.6.17.
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.17.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:01:56 +05:30
Mark H Weaver f167595ba1
Merge branch 'master' into core-updates 2017-08-06 00:23:20 -04:00
Mark H Weaver e3df6938ac
gnu: libtasn1: Add replacement to fix CVE-2017-10790.
Based on commit 01a61d7040
by Leo Famulari <leo@famulari.name>.

* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.
2017-08-06 00:21:09 -04:00
Leo Famulari 01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
Feng Shu 91d94e28ec
gnu: emacs-exwm-x: Do not set DISPLAY.
* gnu/packages/emacs.scm (emacs-exwm-x): Do not set DISPLAY. The issue has
been fixed upstream in exwm-0.15.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:58:58 +05:30
Feng Shu e78e38a4bb
gnu: emacs-exwm: Update to 0.15.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.15.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:48:54 +05:30
Marius Bakke 7f171fdaad
gnu: git: Update to 2.14.0.
* gnu/packages/version-control.scm (git): Update to 2.14.0.
2017-08-05 14:07:43 +02:00
Marius Bakke eedcfa704e
gnu: lftp: Update to 4.7.8.
* gnu/packages/ftp.scm (lftp): Update to 4.7.8.
2017-08-05 14:07:42 +02:00
Julien Lepiller 3d5d87a3ae
gnu: Add cubicle.
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
Ludovic Courtès a56bf101c6
gnu: perl: Work around more "dotless @INC" build issues.
* gnu/packages/web.scm (perl-www-curl)[arguments]: Add 'set-search-path'
phase.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Augment
'configure' phase to set PERL5LIB.
* gnu/packages/image.scm (steghide)[arguments]: Add #:phases argument.
2017-08-05 00:31:26 +02:00
Ludovic Courtès 240d3ceff7
gnu: python-argcomplete: Add dependency on the full Bash.
Fixes a regression introduced in
704243e0c6.

* gnu/packages/python.scm (python-argcomplete)[native-inputs]: Add BASH.
2017-08-05 00:31:26 +02:00
Ludovic Courtès 90ea83ee95
gnu: bluez: Work around test failure on ARM.
This aims to skip the segfaulting test at
<https://hydra.gnu.org/build/2195551>.

* gnu/packages/linux.scm (bluez)[arguments]: Add #:make-flags
when (%current-system) is "armhf-linux".
2017-08-05 00:02:55 +02:00
Julien Lepiller 1cec346232
gnu: php: Update to 7.1.8.
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
Ricardo Wurmus 8d6c845d68
gnu: Add r-crosstalk.
* gnu/packages/web.scm (r-crosstalk): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus a3cd23b639
gnu: Add r-shiny.
* gnu/packages/web.scm (r-shiny): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus 0b0aa76fa8
gnu: Add js-es5-shim.
* gnu/packages/javascript.scm (js-es5-shim): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus 4f65067bde
gnu: Add js-selectize.
* gnu/packages/javascript.scm (js-selectize): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus c4abc94d2b
gnu: Add js-datatables.
* gnu/packages/javascript.scm (js-datatables): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus a6bbb2a0d8
gnu: Add js-highlight.
* gnu/packages/javascript.scm (js-highlight): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus 3f48403aaf
gnu: Add js-strftime.
* gnu/packages/javascript.scm (js-strftime): New variable.
2017-08-04 11:23:52 +02:00
Ricardo Wurmus 68ffb6c586
gnu: Add js-json2.
* gnu/packages/javascript.scm (js-json2): New variable.
2017-08-04 11:23:52 +02:00
Ricardo Wurmus ed69963b03
gnu: Add js-html5shiv.
* gnu/packages/javascript.scm (js-html5shiv): New variable.
2017-08-04 11:23:52 +02:00
Tobias Geerinckx-Rice b316caaa9c
gnu: python-lz4: Fix typo in synopsis.
* gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
2017-08-04 05:00:26 +02:00
Tobias Geerinckx-Rice e9f6a935fb
gnu: python-lz4: Update to 0.10.1.
* gnu/packages/compression.scm (python-lz4): Update to 0.10.1.
[native-inputs]: Add python-setuptools-scm.
2017-08-04 04:59:48 +02:00
Tobias Geerinckx-Rice 54360c917e
gnu: diffoscope: Use HTTPS.
* gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
2017-08-04 04:34:41 +02:00
Tobias Geerinckx-Rice 3b4018d6f2
gnu: sshoot: Update to 1.2.6.
* gnu/packages/vpn.scm (sshoot): Update to 1.2.6.
[home-page]: Update to new project home.
2017-08-04 04:34:41 +02:00
Tobias Geerinckx-Rice f58be41761
gnu: fabric: Update to 1.13.2.
* gnu/packages/admin.scm (fabric): Update to 1.13.2.  Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
Tobias Geerinckx-Rice 19dd5097d9
gnu: certbot, python-acme: Update to 0.17.0.
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04 02:32:53 +02:00
Tobias Geerinckx-Rice 9a7fd375a2
gnu: xonsh: Update to 0.5.12.
* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04 02:06:39 +02:00
Tobias Geerinckx-Rice b55d15e795
gnu: cmark: Update to 0.28.0.
* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04 01:51:23 +02:00
Tobias Geerinckx-Rice 0a3ecfd29c
gnu: thefuck: Update to 3.19.
* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04 01:51:23 +02:00
Tobias Geerinckx-Rice 30ac4cc7e6
gnu: zerofree: Update to 1.1.0.
* gnu/packages/linux.scm (zerofree): Update to 1.1.0.
[home-page, source]: Update from old, inaccessible location.
2017-08-04 01:51:22 +02:00
Tobias Geerinckx-Rice 4de4a1cfcc
gnu: zerofree: Expand description.
* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04 01:51:22 +02:00
Tobias Geerinckx-Rice 7a068459ba
gnu: zerofree: Use ‘install-file’.
* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase,
using ‘install-file’.
2017-08-04 01:51:21 +02:00
Tobias Geerinckx-Rice 0f08917df3
gnu: zerofree: Use ‘modify-phases’ syntax.
* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04 01:51:21 +02:00
Tobias Geerinckx-Rice 20f8d1dd78
gnu: sshfs-fuse: Update to 2.10.
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04 01:51:20 +02:00
Marius Bakke c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.

Reported by Leo Famulari in <https://bugs.gnu.org/27939>.

* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
Marius Bakke c9f4f56b24
gnu: git: Enable tests.
* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
Leo Famulari 81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
Ludovic Courtès c8737b1e41
gnu: icedtea@3.5.0: Properly handle decoding error while substituting.
* gnu/packages/java.scm (icedtea-8)[arguments] <patch-jni-libs>: Change
'encoding-error to 'decoding-error, which is what Guile 2.2 raises when
failing to decode an input file.
2017-08-03 22:46:14 +02:00
Ricardo Wurmus 9e37e537a2
gnu: Add missing references to (gnu packages cran).
This is a follow-up to commit a8cba9dd11.

Reported-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-03 22:15:57 +02:00
Efraim Flashner 7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
This is a follow up to a8cba9dd11.

* gnu/packages/bioinformatics.scm: Add (gnu packages cran) to #:use-modules.
2017-08-03 21:39:12 +03:00
Ricardo Wurmus 2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
Ricardo Wurmus ceb802a31c
gnu: r-desc: Update to 1.1.1.
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
Ricardo Wurmus 5e0de29892
gnu: r-seqminer: Update to 6.0.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus 4e0c847d59
gnu: r-wgcna: Update to 1.60.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus 023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus 7150f1c30c
gnu: r-optparse: Update to 1.4.4.
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 3f6ec083ec
gnu: r-bookdown: Update to 0.4.
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 85cd755417
gnu: r-tclust: Update to 1.2-7.
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 41692b2963
gnu: r-mclust: Update to 5.3.
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus d58faa7f44
gnu: r-rann: Update to 2.5.1.
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus a8c2706de2
gnu: r-statmod: Update to 1.4.30.
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus 80d1185076
gnu: r-gdata: Update to 2.18.0.
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus 2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus 1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 1c576cbadb
gnu: r-irlba: Update to 2.2.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 81c057ced9
gnu: r-sparsem: Update to 1.77.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus fe9917284f
gnu: r-xml: Update to 3.98-1.9.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus 7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus 1c41d51743
gnu: r-plotrix: Update to 3.6-5.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus 76040b8561
gnu: r-readr: Update to 1.1.1.
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus d8048a1212
gnu: r-withr: Update to 2.0.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus f212bf84ab
gnu: r-git2r: Update to 0.19.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus 58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus 63f934e672
gnu: r-backports: Update to 1.1.0.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus c832d326a1
gnu: r-formula: Update to 1.2-2.
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus f05c6275b7
gnu: r-r6: Update to 2.2.2.
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus b07c8c0156
gnu: r-knitr: Update to 1.16.
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus 6dc86e8dfc
gnu: r-formatr: Update to 1.5.
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus 12cd797541
gnu: r-evaluate: Update to 0.10.1.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus d5ce380711
gnu: r-dbi: Update to 0.7.
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus 831858a7d3
gnu: r-bit64: Update to 0.9-7.
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus 6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus 74b037df64
gnu: r-foreign: Update to 0.8-69.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus af1eeabe89
gnu: r-boot: Update to 1.3-20.
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus e584b9fc1b
gnu: r-curl: Update to 2.8.1.
* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 53deffe5e9
gnu: r-htmlwidgets: Update to 0.9.
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 850151058d
gnu: r-htmltools: Update to 0.3.6.
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus a1e54db2ac
gnu: r-servr: Update to 0.6.
* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 9fe794f0f7
gnu: r-jsonlite: Update to 1.5.
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 2d81bc16a9
gnu: r-httpuv: Update to 1.3.5.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus 0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus 64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus c628b8418a
gnu: r-ranger: Update to 0.8.0.
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus f9b3760636
gnu: r-plotly: Update to 4.7.1.
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus d59050823e
gnu: r-igraph: Update to 1.1.2.
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus 7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus 5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus aad948a0ea
gnu: r-tibble: Update to 1.3.3.
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus 4bb0b4cc0a
gnu: Add r-bindrcpp.
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus eed58a0886
gnu: Add r-bindr.
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00