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Author SHA1 Message Date
Nicolas Goaziou 2becddeb0c
gnu: emacs-pdf-tools: Update to 0.90. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90.
[source]: Remove patch.
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove reference to deleted file.
 2019-02-09 23:30:13 +01:00
Marius Bakke 037d591367
gnu: libvpx: Update to 1.8.0. 
* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/video.scm (libvpx): Update to 1.8.0.
[source](patches): Remove obsolete patch.
(libvpx-1.7): New public variable.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Use LIBVPX-1.7 instead of LIBVPX.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source](patches): New field.
[arguments]: Add #:make-flags.
 2019-02-09 20:58:15 +01:00
Ludovic Courtès 50a93adc05
Merge branch 'staging' 2019-02-09 15:14:59 +01:00
Eric Bavier 68a116bd56
gnu: cool-retro-term: Upgrade to 1.1.1. 
* gnu/packages/terminals.scm (cool-retro-term)[source]: Upgrade to 1.1.1.
Remove patches.  Adjust filtering in snippet for added/removed fonts.
[arguments]: Return #t in 'add-alternate-name' phase.
* gnu/packages/patches/cool-retro-term-dont-check-uninit-member.patch,
  gnu/packages/patches/cool-retro-term-fix-array-size.patch,
  gnu/packages/patches/cool-retro-term-memory-leak-1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-02-09 00:50:16 -06:00
Eric Bavier 7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
  gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
 2019-02-07 21:20:47 -06:00
Eric Bavier 2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
 2019-02-07 21:20:23 -06:00
Nicolas Goaziou 00e18f9fa9
gnu: musescore: Update to 3.0.2. 
* gnu/packages/music.scm (musescore): Update to 3.0.2.
[source]: Add patch.
* gnu/packages/patches/musescore-fix-use_webengine.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-02-05 23:11:43 +01:00
Tobias Geerinckx-Rice ab1019f165
gnu: nyx: Update to 2.1.0. 
* gnu/packages/tor.scm (nyx): Update to 2.1.0.
[source]: Remove patch.
* gnu/packages/patches/nyx-show-header-stats-with-python3.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 18:47:09 +01:00
Leo Famulari e36d043882
gnu: Remove unused patch 'mcron-install.patch'. 
This is a followup to commit cfbf6de18c.

* gnu/packages/patches/mcron-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:50 +01:00
Leo Famulari 484f010dd7
gnu: Remove unused patch 'ocaml-graph-honor-source-date-epoch.patch'. 
This is a followup to commit 564cf93f2a.

* gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 5cc3dbbccd
gnu: Remove unused patch 'ocaml-findlib-make-install.patch'. 
This is a followup to commit bff6739d5e.

* gnu/packages/patches/ocaml-findlib-make-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 5baf78999c
gnu: Remove unused patch 'python2-rdflib-drop-sparqlwrapper.patch'. 
* gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 800d74dc9a
gnu: Remove unused patch 'openldap-CVE-2017-9287.patch'. 
This is a followup to commit 47415332d7.

* gnu/packages/patches/openldap-CVE-2017-9287.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 99ee274f0d
gnu: Remove unused patch 'glibc-memchr-overflow-i686.patch'. 
This is a followup to commit 67d527e35e.

* gnu/packages/patches/glibc-memchr-overflow-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 1d1b0b1fb1
gnu: Remove unused patch 'net-tools-bitrot.patch'. 
This is a followup to commit b5f610620b.

* gnu/packages/patches/net-tools-bitrot.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:49 +01:00
Leo Famulari 035542e93a
gnu: Remove unused patch 'xboing-CVE-2004-0149.patch'. 
This is a followup to commit 740a335558.

* gnu/packages/patches/xboing-CVE-2004-0149.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:56:39 +01:00
Leo Famulari 6bf2201350
gnu: Remove unused patch 'ao-cad-aarch64-support.patch'. 
This is a followup to commit 28f4d56dd3.

* gnu/packages/patches/ao-cad-aarch64-support.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:51:34 +01:00
Leo Famulari ee2875e57d
gnu: Remove unused patch 'blender-newer-ffmpeg.patch'. 
This is a followup to commit fc51c28ae8.

* gnu/packages/patches/blender-newer-ffmpeg.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:46:26 +01:00
Leo Famulari bfa3e64d7f
gnu: Removed unused patch 'readline-7.0-mingw.patch'. 
This patch was introduced in commit ae12d58627,
but it was never used.

See <https://bugs.gnu.org/26581> for more information.

* gnu/packages/patches/readline-7.0-mingw.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-04 23:45:25 +01:00
Vagrant Cascadian 4da4e952dd
gnu: u-boot: Update to 2019.01. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2019.01.
(u-boot-tools): Disable CONFIG_SOUND in sandbox configs.
(u-boot-pinebook)[source]: Remove patches.
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch,
gnu/packages/patches/u-boot-pinebook-dts.patch,
gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch,
gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch,
gnu/packages/patches/u-boot-pinebook-syscon-node.patch,
gnu/packages/patches/u-boot-pinebook-video-bridge.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-02-04 00:21:48 +01:00
Marius Bakke 8576505422
gnu: libreoffice: Fix FTBFS with Boost 1.69.0. 
* gnu/packages/patches/libreoffice-boost.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
 2019-02-02 20:10:18 +01:00
Marius Bakke 0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Marius Bakke 39855bfef1
gnu: p11-kit: Update to 0.23.15. 
* gnu/packages/patches/p11-kit-jks-timestamps.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.15.
[source](patches): New field.
 2019-01-31 20:57:21 +01:00
Leo Famulari 11d19ca236
gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778. 
* gnu/packages/patches/qemu-CVE-2018-16872.patch,
gnu/packages/patches/qemu-CVE-2019-6778.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2019-01-31 14:35:48 +01:00
Mark H Weaver 24886c1389
gnu: icecat: Update to 60.5.0-guix1 [security-fixes]. 
Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505.

* gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1.
[version]: Use %icecat-version.
[source]: Inherit from 'icecat-source'.  Remove obsolete patches.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch,
gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch,
gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
 2019-01-29 22:29:42 -05:00
Mark H Weaver 948879eeda
gnu: icecat: Add icecat-source. 
* gnu/packages/gnuzilla.scm (computed-origin-method): New variable.
(%icecat-version, icecat-source): New variables.
* gnu/packages/patches/icecat-makeicecat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-29 22:29:40 -05:00
Efraim Flashner 23c2598233
gnu: x265: Update to 3.0. 
* gnu/packages/video.scm (x265): Update to 3.0.
[source]: Remove patch.
* gnu/packages/patches/x265-detect512-all-arches.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-29 10:07:58 +02:00
Christopher Baines dd7bc92afc
gnu: linkchecker: Fix most test failures. 
Add a patch to skip more tests that require the network. Along with some other
changes, this gets all but of one of the tests passing.

The remaining test is broken due to a problem with the Python package in Guix,
which is fixed by [1] which is currently on the core-updates branch. This
patch doesn't work on core-updates due to python2-miniboa not being present.

1: d453b0e11d

* gnu/packages/python.scm (linkchecker)[source]: Add patch.
[native-inputs]: Add more inputs required for the tests.
[arguments]: Enable the tests, move the 'check phase after 'install. Test
using the installed software, and use py.test.
 2019-01-25 22:00:05 +00:00
Eric Bavier 6161141e91
superlu-dist: Upgrade to 6.1.0. 
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0.  Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]:   Replace pt-scotch with pt-scotch32 to match integer
sizes.  Add "parmetis" input, from pt-scotch32.  Move lapack to ...
[inputs]: ...here.  Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags.  Add
'set-c++-standard' and 'omp-setup' phases.  Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2019-01-25 13:10:05 -06:00
Eric Bavier fd3733432b
scotch: Upgrade to 6.0.6. 
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase.  Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-01-25 13:10:05 -06:00
Eric Bavier a6b9ebc2fc
gnu: Add Combinatorial BLAS. 
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
 2019-01-25 13:09:47 -06:00
Ricardo Wurmus 02d38bd3a2
Merge branch 'master' into staging 2019-01-25 15:20:25 +01:00
Maxim Cournoyer a2e7e95663
gnu: gnucash: Disable the stress-options-test using a phase. 
The qof test is also reinstated; it was failing because the needed locales
were not installed.

* gnu/packages/patches/gnucash-disable-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gnucash.scm (gnucash)[patches]: Remove it.
[phases]{disable-stress-options-test}: Implement it using SUBSTITUTES*.
{install-locales}: New phase.
 2019-01-23 07:46:27 -05:00
Maxim Cournoyer 7c8ea31ac9
gnu: gnucash: Convert price-quotes-perl patch to a phase. 
* gnu/packages/patches/gnucash-price-quotes-perl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gnucash.scm (gnucash)[patches]: Remove it.
[phases]{fix-finance-quote-check}: Implement it using SUBSTITUTES*.
 2019-01-23 07:46:27 -05:00
Efraim Flashner d4274628a6
gnu: python-pyqt: Update to 5.11.3. 
* gnu/packages/qt.scm (python-pyqt): Update to 5.11.3.
* gnu/packages/patches/pyqt-public-sip: Update patch.
 2019-01-21 10:03:09 +02:00
Efraim Flashner c82cd3a7bd
gnu: qt: Update to 5.11.3. 
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtscxml,
qtgamepad, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d,
qtnetworkauth, qtremoteobjects, qtspeech): Update to 5.11.3.
(qt)[source]: Remove patch.
* gnu/packages/patches/qt-5-renameat2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-21 10:03:05 +02:00
Ludovic Courtès 3e2d4e69c3
Merge branch 'master' into staging 2019-01-20 22:12:10 +01:00
Leo Famulari 2b65a9e6d1
gnu: OpenSSH: Fix CVE-2018-20685. 
* gnu/packages/patches/openssh-CVE-2018-20685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2019-01-17 14:02:04 -05:00
Mathieu Othacehe 08af580bde
gnu: kmscon: Add runtime keymap update support. 
* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/terminals.scm (kmscon)[source]: Add patch.
 2019-01-17 14:04:20 +01:00
Efraim Flashner 39ad752cf9
gnu: kodi: Skip failing test. 
* gnu/packages/kodi.scm (kodi)[source]: Add patch.
* gnu/packages/patches/kodi-skip-test-449.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-16 11:59:35 +02:00
Ludovic Courtès a8b0556ea1
gnu: libssh: Update to 0.8.6. 
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
 2019-01-14 23:43:49 +01:00
Efraim Flashner 8e21fa0bd3
gnu: opencv: Loosen test suite failures. 
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-14 15:07:42 +02:00
Marius Bakke 6764f94317
Merge branch 'master' into staging 2019-01-13 01:40:04 +01:00
Hartmut Goebel 46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs. 
Using LIBRARY_PATH was introduced in
16b8aff85b, but is wrong since
this variable is used by the compiler (gcc) at link time.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: Change
  LIBRARY_PATH to KDEINIT5_LIBRARY_PATH.
* gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]:
  New field.
 2019-01-11 16:35:52 +01:00
Danny Milosavljevic f87ea24a82
gnu: Add docker. 
* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-10 02:49:14 +01:00
Leo Famulari e82c98abe9
gnu: aria2: Fix CVE-2019-3500. 
* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (aria2)[source]: Use it.
 2019-01-09 15:38:19 -05:00
Efraim Flashner 0e28967250
Merge remote-tracking branch 'origin/master' into staging 2019-01-09 10:52:41 +02:00
Jelle Licht 41a010875b
gnu: biber: Update to 2.12. 
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-07 15:40:58 +01:00
Alex Vong c824dedf71
gnu: libarchive: Replace with libarchive 3.3.3 and fix CVE-2018-{1000877,1000878,1000880}. 
* gnu/packages/backup.scm (libarchive)[source, home-page]: Use HTTPS.
[replacement]: New field.
(libarchive-3.3.3): New variable.
* gnu/packages/patches/libarchive-CVE-2018-1000877.patch,
gnu/packages/patches/libarchive-CVE-2018-1000878.patch,
gnu/packages/patches/libarchive-CVE-2018-1000880.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-07 05:42:34 +08:00
Efraim Flashner 30e06c2cee
gnu: unrtf: Update to 0.21.10. 
* gnu/packages/unrtf.scm (unrtf): Update to 0.21.10.
[source]: Remove patch, remove snippet.
[license]: Update to gpl3+.
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-01-06 15:42:05 +02:00
Efraim Flashner 87fd7a35c2
gnu: streamlink: Fix build. 
* gnu/packages/video.scm (streamlink)[source]: Add patch.
* gnu/packages/patches/streamlink-update-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-05 22:55:14 +02:00
Hartmut Goebel 0fd6138175
gnu: kpackage: Transfer patches from NixOS. 
Transfer the NixOS patches for kpackage as of 2018-02-17:
- Allow external paths.
- Make QDirIterator follow symlinks.

Decided to use a patch for one of the "allow external paths" changes since
'substitute*' seems not to be robust enough.

* gnu/packages/patches/kpackage-allow-external-paths.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm(kpackage)[source]: Use it. <patch>: New
  phase.
 2019-01-04 10:10:46 +01:00
Hartmut Goebel 16b8aff85b
gnu: kinit: Use LIBRARY_PATH to search for dynamically loaded libs. 
Transfer the NixOS "kdeinit-libpath" patch for kinit as of
2018-02-17.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kinit)[source]: Use it.
 2019-01-04 10:10:44 +01:00
Hartmut Goebel f8a0f3ac70
gnu: kinit: Use the store paths for dynamically loaded libs. 
Transfer the NixOS "kdeinit-extra_libs" patch for kinit as of
2018-02-17.

* gnu/packages/patches/kinit-kdeinit-extra_libs.patch: New filee.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kinit)[source]: Use it.
  <patch-paths>: New phase.
  [inputs]: Add kparts, plasma-framework.
 2019-01-04 10:10:43 +01:00
Hartmut Goebel a6e532815d
gnu: kio: Search 'smbd' on $PATH. 
Transfer the remaining NixOS patch for kio as of 2018-02-17.

* gnu/packages/patches/kio-search-smbd-on-PATH.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm(kio)<source>: Use it.
 2019-01-04 10:10:42 +01:00
Alex Vong 8f36c8e9ea
gnu: libextractor: Fix CVE-2018-{20430,20431}. 
* gnu/packages/patches/libextractor-CVE-2018-20430.patch,
gnu/packages/patches/libextractor-CVE-2018-20431.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnunet.scm (libextractor)[source]: Use them.
 2019-01-04 07:33:46 +08:00
Kei Kebreau b634b5c253
gnu: vboot-utils: Fix building on armhf-linux. 
* gnu/packages/bootloaders.scm (vboot-utils)[source]: Add patches.
[arguments]: Conditionally add "HOST_ARCH=arm" to #:make-flags.
* gnu/packages/patches/vboot-utils-fix-format-load-address.patch,
gnu/packages/patches/vboot-utils-fix-tests-show-contents.patch,
gnu/packages/patches/vboot-utils-skip-test-workbuf.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-01-03 15:40:27 -05:00
Maxim Cournoyer 707efe171a
gnu: gnucash: Fix test failure. 
Fixes issue #32057 (see: https://issues.guix.info/issue/32057).

* gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Use it.
 2019-01-02 17:10:08 -05:00
Efraim Flashner a69f071537
gnu: owncloud-client: Update to 2.5.1.10973. 
* gnu/packages/sync.scm (owncloud-client): Update to 2.5.1.10973.
* gnu/packages/patches/owncloud-disable-updatecheck.patch: Update patch.
 2019-01-02 19:53:06 +02:00
Efraim Flashner 0109b89c58
gnu: allegro@5.0: Fix building with newer mesa. 
* gnu/packages/game-development.scm (allegro@5.0)[source]: Add patch.
(allegro)[patch]: Rename patch file.
* gnu/packages/patches/allegro-fix-compiliation-mesa-18.2.5-and-later.patch:
Rename to gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-01 10:55:44 +02:00
Efraim Flashner d5c60e0aff
gnu: allegro@4: Fix building with newer mesa. 
* gnu/packages/game-development.scm (allegro@4)[source]: Add patch.
* gnu/packages/patches/allegro4-mesa-18.2.5-and-later.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-01 10:55:41 +02:00
Efraim Flashner 47970cf66c
gnu: wesnoth: Fix building with newer boost. 
* gnu/packages/games.scm (wesnoth)[source]: Add patch.
* gnu/packages/patches/wenoth-newer-boost.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-31 10:26:32 +02:00
Efraim Flashner 684f97f8c9
gnu: vinagre: Update package for newer freerdp. 
* gnu/packages/gnome.scm (vinagre)[source]: Update patches.
[arguments]: Add custom  phase to replace 'freerdp' with
'freerdp2'. Remove configure flags.
* gnu/packages/patches/vinagre-revert-1.patch,
gnu/packages/patches/vinagre-revert-2.patch: Remove files.
* gnu/packages/patches/vinagre-newer-freerdp.patch,
gnu/packages/patches/vinagre-newer-rdp-parameters.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register changes.
 2018-12-30 20:22:59 +02:00
Efraim Flashner 152d6bf014
gnu: fbreader: Fix building with newer curl. 
* gnu/packages/ebook.scm (fbreader)[source]: Add patch.
* gnu/packages/patches/fbreader-curl-7.62.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-30 11:49:31 +02:00
Efraim Flashner 1262be5c61
gnu: glib-networking: Work around test failure. 
* gnu/packages/gnome.scm (glib-networking)[source]: Add patch.
* gnu/packages/patches/glib-networking-connection.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-27 12:55:45 +02:00
Marius Bakke 2bfcdbce51
Merge branch 'master' into staging 2018-12-26 16:03:09 +01:00
Marius Bakke e99d036828
gnu: efl: Fix build on 32-bit architectures. 
* gnu/packages/patches/efl-mesa-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/enlightenment.scm (efl)[source](patches): Use it.
 2018-12-26 12:27:57 +01:00
Marius Bakke 33eb63da64
gnu: sssd: Fix build with cURL >= 7.62.0. 
* gnu/packages/patches/sssd-curl-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/sssd.scm (sssd)[source](patches): Use it.
 2018-12-26 12:27:57 +01:00
Efraim Flashner e47c69f226
gnu: file: Fix CVE-2018-10360. 
* gnu/packages/patches/file-CVE-2018-10360.patch: New file.
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use 'package/inherit' to
receive security fixes.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-24 11:12:52 +02:00
Marius Bakke 6bd8ba619d
gnu: zathura: Update to 0.4.3. 
* gnu/packages/patches/zathura-plugindir-environment-variable.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/pdf.scm (zathura): Update to 0.4.3.
[source](patches): Remove.
[native-search-paths]: Adjust for upstreamed patch.
 2018-12-23 23:26:30 +01:00
Marius Bakke 02bf685d00
Merge branch 'master' into staging 2018-12-23 23:26:04 +01:00
Efraim Flashner 472c36bd36
gnu: pingus: Fix building. 
* gnu/packages/games.scm (pingus)[source]: Use 'git-fetch'. Add patch to
update used boost headers.
* gnu/packages/patches/pingus-boost-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-23 21:41:16 +02:00
Efraim Flashner b83ddd03d9
gnu: datamash: Update to 1.4. 
* gnu/packages/datamash.scm (datamash): Update to 1.4.
[source]: Remove patch.
* gnu/packages/patches/datamash-arm-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-12-23 16:37:51 +02:00
Marius Bakke f30830b2e6
Merge branch 'master' into staging 2018-12-22 15:26:30 +01:00
Mathieu Othacehe 4b33a74138
gnu: Add emacs-wordnut. 
* gnu/packages/patches/emacs-wordnut-require-adaptive-wrap.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add previous file.
* gnu/packages/emacs.scm (emacs-wordnut): New package.
 2018-12-21 10:54:09 +01:00
Kei Kebreau b70ff03e59
gnu: meandmyshadow: Update to 10.5a. 
* gnu/packages/games.scm (meandmyshadow): Update to 10.5a.
[source]: Remove patch.
* gnu/local.mk (dist_patch_DATA): Unregister patch.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: Delete file.
 2018-12-20 13:21:34 -05:00
Pierre Langlois dba83d7d14
gnu: stumpwm: Fix gnew command. 
The new release of StumpWM broken the interactive 'gnew' command.  It was
fixed upstream [0] and will be part of the next release.

0: https://github.com/stumpwm/stumpwm/pull/538

* gnu/packages/patches/stumpwm-fix-broken-read-one-line.patch: New file.
* gnu/packages/lisp.scm (stumpwm)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-12-19 09:45:39 -05:00
Arun Isaac 01cb4d4757
gnu: ansible: Work around issues with Guix wrapper scripts. 
* gnu/packages/admin.scm (ansible)[source]: Remove
ansible-wrap-program-hack.patch from patches.
[arguments]: Add hide-wrapping and fix-symlinks phases.
* gnu/packages/patches/ansible-wrap-program-hack.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
 2018-12-18 11:20:56 +05:30
Ludovic Courtès 92391eaf8d
gnu: glibc: Add patch implementing "pid/…" magic lookup on the Hurd. 
This patch is missing from glibc 2.28 and is needed to support
/proc/self lookup when using the Hurd's procfs, which in turn is needed
for our 'guile-relocatable.patch'.

See <https://lists.gnu.org/archive/html/bug-hurd/2018-12/msg00024.html>.

* gnu/packages/patches/glibc-hurd-magic-pid.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[arguments]: Add 'apply-hurd-patch'
phase.
[native-inputs]: Add "hurd-magic-pid-patch" input.
* gnu/packages/cross-base.scm (cross-libc)[arguments]: Duplicate
'apply-hurd-patch' phase.
 2018-12-16 16:28:07 +01:00
Rutger Helling 6b34499dc6
gnu: qemu: Update to 3.1.0. 
* gnu/packages/virtualization.scm (qemu): Update to 3.1.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/qemu-CVE-2018-16847.patch,
gnu/packages/patches/qemu-CVE-2018-16867.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-12-13 14:40:52 -05:00
Marius Bakke 12878d12ac
Merge branch 'master' into staging 2018-12-12 22:00:52 +01:00
Marius Bakke 3f2848a5f9
gnu: libtiff: Update to 4.0.10. 
* gnu/packages/patches/libtiff-CVE-2017-18013.patch,
gnu/packages/patches/libtiff-CVE-2017-9935.patch,
gnu/packages/patches/libtiff-CVE-2018-10963.patch,
gnu/packages/patches/libtiff-CVE-2018-8905.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (libtiff): Update to 4.0.10.
[source](patches): Remove.
 2018-12-12 21:31:42 +01:00
Marius Bakke 6521155212
gnu: glib-networking: Update to 2.58.0. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.58.0.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Explicitly disable libproxy; add phase to appease tests.
(libgdata, libsoup)[arguments]: Remove phase that sets SSL_CERT_FILE.
* gnu/packages/spice.scm (spice)[arguments]: Likewise.
* gnu/packages/web.scm (uhttpmock)[arguments]: Likewise.
 2018-12-12 20:49:14 +01:00
Marius Bakke 06f5bc4e12
gnu: GnuTLS: Update to 3.6.5. 
* gnu/packages/patches/gnutls-skip-pkgconfig-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/tls.scm (gnutls): Update to 3.6.5.
[source](patches): Remove obsolete.
[source](snippet): Add Guile detection fix.
* gnu/packages/gnome.scm (libsoup)[arguments]: Adjust 'certtool' invokation to
cope with the new API.
 2018-12-12 20:49:14 +01:00
Marius Bakke af0162bcc1
gnu: cyrus-sasl: Update to 2.1.27. 
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl): Update to 2.1.27.
[source](patches): Remove.
[inputs]: Move MIT-KRB5 from here ...
[propagated-inputs]: ... to here.  New field.
* gnu/packages/openldap.scm (openldap)[arguments]: Adjust
'patch-sasl-path' phase (which was defunct, possibly since b148506df7) to
add krb5 linker flags.
 2018-12-12 20:49:13 +01:00
Marius Bakke 87f29c1e5d
gnu: ghostscript: Update to 9.26. 
* gnu/packages/patches/ghostscript-bug-699708.patch,
gnu/packages/patches/ghostscript-CVE-2018-16509.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.26.
[source](patches): Remove obsolete.
 2018-12-12 20:49:13 +01:00
Marius Bakke d1ee69a9e8
gnu: cairo: Update to 1.16.0. 
* gnu/packages/patches/cairo-CVE-2016-9082.patch,
gnu/packages/patches/cairo-setjmp-wrapper.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them/
* gnu/packages/gtk.scm (cairo): Update to 1.16.0.
[source](patches): Remove.
 2018-12-12 20:49:12 +01:00
Marius Bakke 143fc1a591
gnu: poppler: Update to 0.72.0. 
* gnu/packages/patches/poppler-CVE-2018-19149.patch: Delete file.
* gnu/packages/patches/inkscape-poppler-compat3.patch,
gnu/packages/patches/texlive-bin-luatex-poppler-compat.patch,
gnu/packages/patches/texlive-bin-pdftex-poppler-compat.patch,
gnu/packages/patches/texlive-bin-xetex-poppler-compat.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/pdf.scm (poppler): Update to 0.72.0.
[replacement]: Remove field.
(poppler/fixed): Remove variable.
* gnu/packages/inkscape.scm (inkscape)[source](patches): Add
'inkscape-poppler-compat{3..5}.patch'.
* gnu/packages/tex.scm (texlive-bin)[source](patches): Update
'texlive-poppler-compat.patch'.  Add
'texlive-bin-{lua,pdf,xe}tex-poppler-compat.patch'.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source](modules, snippet): New
fields.
* gnu/packages/scribus.scm (scribus)[source](patches): Add upstream patch origins.
[source](modules, snippet): New fields.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add three
upstream origins.
[source](snippet, modules): New field.
 2018-12-12 20:49:12 +01:00
Rutger Helling ab533c613e
gnu: allegro: Fix compilation with Mesa >= 18.2.5. 
* gnu/packages/game-development.scm (allegro)[source]: Add
allegro-fix-compilation-mesa-18.2.5-and-later.patch.
* gnu/packages/patches/allegro-fix-compilation-mesa-18.2.5-and-later.patch:
New file.
 2018-12-12 11:12:01 +01:00
Leo Famulari fec2c8532d
gnu: Borg: Update to 1.1.8. 
* gnu/packages/backup.scm (borg): Update to 1.1.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/borg-respect-storage-quota.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-12-10 13:23:17 -05:00
Gábor Boskovits accb5c3100
gnu: openjdk: Make idlj respect SOURCE_DATE_EPOCH. 
* gnu/packages/patches/openjdk-10-idlj-reproducibility.patch: New file.
* gnu/packages/java.scm (openjdk10)[source]: Use it.
* gnu/locale.mk (dist_patch_DATA): Register it.
 2018-12-09 12:55:36 +01:00
Leo Famulari 5d3f673db4
gnu: polkit: Fix CVE-2018-19788. 
* gnu/packages/patches/polkit-CVE-2018-19788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit)[source]: Use it.
 2018-12-09 00:21:09 -05:00
Marius Bakke fbb7b04a85
Merge branch 'master' into staging 2018-12-09 00:18:32 +01:00
Marius Bakke 8d65ae44ac
gnu: GCC@6: Update to 6.5.0. 
* gnu/packages/patches/gcc-libsanitizer-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gcc.scm (gcc-6): Update to 6.5.0.
[source](patches): Drop obsolete patches.
[source](snippet): Remove.
 2018-12-08 19:37:47 +01:00
Ludovic Courtès 3933905c5f
Merge branch 'version-0.16.0' 2018-12-07 00:00:41 +01:00
Leo Famulari e6c28113e6
gnu: QEMU: Fix CVE-2018-16847 and CVE-2018-16867. 
* gnu/packages/patches/qemu-CVE-2018-16847.patch,
gnu/packages/patches/qemu-CVE-2018-16867.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2018-12-06 16:16:54 -05:00
Stefan Stefanović 4163f2467b
gnu: elogind: Update to 239.2. 
* gnu/packages/freedesktop.scm (elogind): Update to 239.2.
[source](patches): Remove elogind-glibc-2.27.patch.
[source](snippet): Remove snippet.
[arguments]:
<#:tests?>: Enable tests.
<#:configure-flags>: Adjust build paths. Disable some tests.
<#:make-flags>: Remove argument.
<#:phases>[patch-locale-header]: Remove phase.
<#:phases>[clean-runpath]: Add phase.
<#:phases>[bootstrap]: Remove phase.
<#:phases>[fix-pkttyagent-path]: Add phase.
<#:phases>[fix-service-file]: Remove phase.
<#:phases>[add-libcap-to-search-path]: Remove phase.
<#:phases>[remove-uaccess-tag]: Remove phase.
<#:phases>[change-pid-file-path]: Add phase.
[build-system]: Switch to meson-build-system.
[native-inputs]: Sort native-inputs list.
Remove gperf package version constraint.
Remove: autoconf, automake, libtool, intltool.
Add: docbook-xml-4.2.
[inputs]: Remove: linux-libre-headers.
* gnu/packages/patches/elogind-glibc-2.27.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-12-06 20:22:41 +01:00
Ludovic Courtès c16c119d0a
gnu: quilt: Use shorter file names for patches. 
We were reaching the 99-character limit of POSIX tar.

* gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this.
* gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-second-separator.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
 2018-12-05 00:08:28 +01:00
Marius Bakke 4115e8ea3b
gnu: json-glib: Update to 1.4.4. 
* gnu/packages/patches/json-glib-fix-tests-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (json-glib): Update to 1.4.4.
[source](patches): Remove.
 2018-12-04 20:05:20 +01:00
Leo Famulari c05c1910db
gnu: Beets: Fix compatibility with Python 3.7. 
* gnu/packages/patches/beets-python-3.7-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
*  gnu/packages/music.scm (beets)[source]: Use it.
 2018-12-03 17:30:30 -05:00
Marius Bakke 99f63f011d
Merge branch 'master' into staging 2018-12-03 19:15:17 +01:00
Ludovic Courtès 194451347d
Merge branch 'core-updates' 2018-12-03 08:52:17 +01:00
Eric Bavier 37b82ccc39
handbrake: Update to 1.1.2. 
* gnu/packages/video.scm (handbrake): Update to 1.1.2.
[source]: Use direct download url.  Remove upstreamed patch.  Patch make
fragments in snippet.
[inputs]: Use latest ffmpeg.  Add jansson and opus.
[arguments]: Remove 'disable-contrib phase, which is now in source snippet.
Move 'fix-x265-linking phase fix to #:configure-flags.
[license]: Use 'gpl2' as clarified in LICENSE.
* gnu/packages/patches/handbrake-pkg-config-path.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-12-01 09:42:25 -06:00
Efraim Flashner 5deb0c670d
gnu: blender: Use newer ffmpeg. 
* gnu/packages/graphics.scm (blender)[source]: Add patch for newer
ffmpeg compatability.
[inputs]: Replace ffmpeg-2.8 with ffmpeg.
* gnu/packages/patches/blender-newer-ffmpeg.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-11-30 11:14:27 +02:00
Eric Bavier 5f230fb279
patchutils: Update to 0.3.4. 
* gnu/packages/patchutils.scm (patchutils): Update to 0.3.4.
[arguments]: Simplify 'patch-test-scripts' phase.
* gnu/packages/patches/patchutils-xfail-gendiff-tests.patch: Rename to...
* gnu/packages/patches/patchutils-test-perms.patch: ...this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-11-30 00:21:25 -06:00
Marius Bakke 25ca46985c
Merge branch 'master' into core-updates 2018-11-29 15:56:49 +01:00
Ludovic Courtès c324ad52b6
gnu: lirc: Build reproducibly. 
* gnu/packages/patches/lirc-reproducible-build.patch: New file.
* gnu/packages/lirc.scm (lirc)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-29 14:11:35 +01:00
Ludovic Courtès f2c99fe52b
gnu: rust: Shorten patch file name. 
This file name was too long to fit in a tar archive.

* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
Rename to...
* gnu/packages/patches/rust-reproducible-builds.patch: ... this.
* gnu/packages/rust.scm (rust-1.27, rust): Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-11-29 13:14:22 +01:00
Ricardo Wurmus 4236959de8
gnu: scribus: Fix build with recent Poppler. 
Suggested by ngz on #guix.

* gnu/packages/patches/scribus-poppler.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scribus.scm (scribus)[source]: Add patch.
 2018-11-27 23:56:12 +01:00
Efraim Flashner 8e59c5febd
gnu: x265: Fix building on armhf-linux. 
* gnu/packages/video.scm (x265)[patches]: Add patch.
[arguments]: Add a configure-flag to disable assembly. Adjust a custom
phase to recognize armv8 as 32-bit arm when masquerading as armhf-linux.
 2018-11-27 19:58:01 +02:00
Eric Bavier 579a9cdec7
gnu: Add libopenshot. 
* gnu/packages/video.scm (libopenshot): New variable.
* gnu/packages/patches/libopenshot-tests-with-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-26 19:03:54 -06:00
Danny Milosavljevic bc0d24292d
gnu: mono: Make build reproducible. 
* gnu/packages/patches/mono-mdoc-timestamping.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mono.scm (mono)[source]: Use patch.
[arguments]<#:phases>[make-reproducible]: New phase.
<#:phases>[set-env]: Set SOURCE_DATE_EPOCH.
 2018-11-27 00:36:47 +01:00
Björn Höfling 644af6c870
gnu: aegisub: Fix build. 
* gnu/packages/patches/aegisub-boost68.patch: New file
* gnu/local.mk: Add it.
* gnu/packages/video.scm (aegisub)[source]: Use patch.
 2018-11-25 23:29:09 +01:00
Marius Bakke 1e92d311c3
gnu: randomjungle: Do not build static binaries. 
* gnu/packages/patches/randomjungle-disable-static-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/machine-learning.scm (randomjungle)[source](patches): Add it.
[arguments]: Add "--disable-static" to #:configure-flags.
 2018-11-25 20:38:34 +01:00
Marius Bakke 4d8f4a3f00
Merge branch 'master' into core-updates 2018-11-24 01:58:18 +01:00
Vagrant Cascadian 74e35e8c94
gnu: Add u-boot-pinebook. 
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file.
* gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file.
* gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file.
* gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file.
* gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file.
* gnu/packages/patches/u-boot-pinebook-dts.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable.
* gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported
variable.
* gnu/system/install.scm (pinebook-installation-os): New exported variable.
 2018-11-22 21:59:05 +01:00
Ricardo Wurmus 37751b480f
gnu: podofo: Add patch to fix build. 
* gnu/packages/patches/podofo-cmake-3.12.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (podofo)[source]: Add patch.
 2018-11-22 21:56:41 +01:00
Marius Bakke 7ff3f3d22c
gnu: python-scikit-learn: Update to 0.20.1. 
* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files.  Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
 2018-11-22 17:02:47 +01:00
Marius Bakke ec8130eb23
Merge branch 'master' into core-updates 2018-11-22 00:10:44 +01:00
Alex Vong f9e5caf9ba
gnu: teeworlds: Update to 0.7.0 [fixes CVE-2018-18541]. 
* gnu/packages/games.scm (teeworlds): Update to 0.7.0.
[source]: Switch to git-fetch. Remove all bundled libraries except md5.
[arguments]: Adjust accordingly.
[inputs]: Use sdl2 instead of sdl and python-wrapper instead of python-2.
Add json-parser and pnglite.
* gnu/packages/patches/teeworlds-use-latest-wavpack.patch: Update it.
 2018-11-22 03:21:29 +08:00
Efraim Flashner 9cf4ff199c
Merge remote-tracking branch 'origin/master' into core-updates 2018-11-21 19:41:43 +02:00
Ludovic Courtès e555bbfc48
gnu: emacs-pdf-tools: Fix build with recent Poppler. 
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès e1f7912761
gnu: casync: Fix build with glibc 2.28. 
* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-21 17:38:00 +01:00
Efraim Flashner 5e369f8ab9
gnu: Add pinentry-efl. 
* gnu/packages/gnupg.scm (pinentry-efl): New variable.
* gnu/packages/patches/pinentry-efl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-11-20 12:38:57 +02:00
Marius Bakke 4f70db97a0
Merge branch 'master' into core-updates 2018-11-20 01:14:12 +01:00
Julien Lepiller 564cf93f2a
gnu: ocaml: Update to 4.7.0. 
Update ocaml to the latest version and fixes dependent packages by
updating them or by adding new inputs, such as ocaml-num and ocamlbuild,
that were removed from the core ocaml package. Rename packages that
cannot be built with the new compiler with an ocaml4.02 prefix. Add
ocaml4.02 dependencies.

* gnu/packages/ocaml.scm (ocaml): Update to 4.7.0.
(ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip)
(ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest)
(ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree)
(ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned)
(ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult)
(ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner)
(ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools)
(ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log)
(ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos)
(ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf)
(ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake)
(ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq)
(ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages.
(opam): Update to 2.0.0.
(camlp4): Update to 4.07+1.
(camlp5): Update to 7.06.
(hevea): Update to 2.32.
(coq)[inputs]: Add ocaml-num.
(emacs-tuareg): Update to 2.2.0.
(ocaml-menhir)[native-inputs]: Add ocamlbuild.
(ocaml-lablgtk): Update to 2.18.6.
(unison)[inputs]: Use ocaml-4.02.
(ocaml-findlib): Update to 1.8.0.
(ocaml-ounit)[native-inputs]: Add ocamlbuild.
(ocamlmod): Update to 0.0.9.
(ocaml-frontc)[arguments]: Use ocaml-4.02.
(ocaml-qcheck)[native-inputs]: Add ocamlbuild.
(ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild.
(ocaml-stringext)[native-inputs]: Add ocamlbuild.
(ocaml-bisect): Update to 1.3.1.
(ocaml4.01-bisect): Downgrade to 1.3.
(ocaml-bitstring): Update to 3.1.0.
(ocaml-topkg)[native-inputs]: Add ocamlbuild.
(ocaml-rresult)[native-inputs]: Add ocamlbuild.
(ocaml-sqlite3)[native-inputs]: Add ocamlbuild.
(ocaml-csv)[native-inputs]: Add ocamlbuild.
(ocaml-mtime)[native-inputs]: Add ocamlbuild.
(ocaml-cmdliner)[native-inputs]: Add ocamlbuild.
(ocaml-fmt)[native-inputs]: Add ocamlbuild.
(ocaml-astring)[native-inputs]: Add ocamlbuild.
(ocaml-alcotest)[native-inputs]: Add ocamlbuild.
(ocaml-ppx-tools)[native-inputs]: Add ocamlbuild.
(ocaml-react)[native-inputs]: Add ocamlbuild.
(ocaml-ssl)[arguments]: Return #t in phases.
(ocaml-lwt): Update to 4.1.0.
(ocaml-logs)[native-inputs]: Add ocamlbuild.
(ocaml-fpath)[native-inputs]: Add ocamlbuild.
(ocaml-bos)[native-inputs]: Add ocamlbuild.
(ocaml-xmlm): Update to 1.3.0.
(ocaml-ulex): Update to 1.2.0.
(ocaml-uchar)[native-inputs]: Add ocamlbuild.
(ocaml-uutf): Update to 1.0.1.
(ocaml-jsonm): Update to 1.0.1.
(ocaml-ocurl): Update to 0.8.2.
(ocaml-base64)[native-inputs]: Add ocamlbuild.
(ocamlify)[native-inputs]: Use ocaml-4.02.
(omake): Update to 0.10.3.
(ocaml-batteries): Update to 2.9.0.
(ocaml-pcre)[native-inputs]: Add ocamlbuild.
(ocaml-expect): Update 0.0.6.
(ocaml4.02-fileutils): Update to 0.5.3.
(ocaml-oasis): Update 0.4.11.
(ocaml-js-build-tools)[native-inputs]: Add ocamlbuild.
(ocaml-bin-prot): Rename to ocaml4.02-bin-prot.
(ocaml-fieldslib): Rename to ocaml4.02-fieldslib.
(ocaml-ppx-core): Rename to ocaml4.02-ppx-core.
(ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp.
(ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver.
(ocaml-cppo): Update to 1.6.5.
(ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving.
(ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv.
(ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test.
(ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench.
(ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare.
(ocaml-sexplib): Rename to ocaml4.02-sexplib.
(ocaml-typerep): Rename to ocaml4.02-typerep.
(ocaml-variantslib): Rename to ocaml4.02-variantslib.
(ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv.
(ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv.
(ocaml-ppx-here): Rename to ocaml4.02-ppx-here.
(ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert.
(ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate.
(ocaml-ppx-let): Rename to ocaml4.02-ppx-let.
(ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv.
(ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value.
(ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang.
(ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot.
(ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail.
(ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf.
(ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message.
(ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv.
(ocaml-re): Update to 1.8.0.
(ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect.
(ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane.
(ocaml-core-kernel): Rename to ocaml4.02-core-kernel.
(ocaml-async-kernel): Rename to ocaml4.02-async-kernel.
(ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel.
(ocaml-core): Rename to ocaml4.02-core.
(ocaml-async-unix): Rename to ocaml4.02-async-unix.
(ocaml-async-extra): Rename to ocaml4.02-async-extra.
(ocaml-async): Rename to ocaml4.02-async.
(ocaml-ocplib-endian)[native-inputs]: Update to 1.0.
(ocaml-cstruct): Rename to ocaml4.02-cstruct.
(ocaml-hex): Rename to ocaml4.02-hex.
(ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm.
(ocaml-uri): Rename to ocaml4.02-uri.
(optcomp): Use ocaml-4.02.
(ocaml-piqilib): Update to 0.6.14.
(ocaml-uuidm)[native-inputs]: Add ocamlbuild.
(ocaml-graph): Update to 1.8.8.
(ocaml-piqi): Update to 0.7.6.
(bap): Update to 1.3.0.
(ocaml-camomile): Update to 1.0.1.
(ocaml-jbuilder): Use ocaml-4.02.
(ocaml-lambda-term): Update to 1.13.
(ocaml-utop): Update to 2.2.0.
(ocaml-integers)[native-inputs]: Add ocamlbuild.
(ocaml-ctypes): Update to 0.14.0.
(ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild.
(ocaml-tsdl)[native-inputs]: Add ocamlbuild.
* gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02.
* gnu/packages/maths.scm (cubicle): Update to 1.1.2.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
Update patch.
* guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib)
(package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
 2018-11-18 18:51:08 +01:00
Ludovic Courtès af50b4abc0
gnu: qt@5: Fix build failure on glibc 2.28. 
* gnu/packages/patches/qt-5-renameat2.patch: New file.
* gnu/packages/qt.scm (qt)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-18 12:28:34 +01:00
Eric Bavier 0a41123f01
gnu: Add ClamAV. 
* gnu/packages/antivirus.scm: New file.
* gnu/packages/patches/clamav-system-tomsfastmath.patch,
gnu/packages/patches/clamav-config-llvm-libs.patch: New files.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new module.
(dist_patch_DATA): Add patches.

Co-authored-by: Christopher Baines <mail@cbaines.net>
 2018-11-17 00:20:44 -06:00
Eric Bavier 7ed018e8a2
gnu: Add TomsFastMath. 
* gnu/packages/multiprecision.scm (tomsfastmath): New variable.
* gnu/packages/patches/tomsfastmath-constness.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-17 00:20:44 -06:00
Maxim Cournoyer 03592a6f88
gnu: emacs-realgud: Patch configure.ac to repair the build. 
This fixes https://bugs.gnu.org/33196, a build problem caused by a defective
Elisp snippet in a check in configure.ac.

* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
 2018-11-15 22:42:35 -05:00
Marius Bakke 79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari 021bf6af18
gnu: Poppler: Fix CVE-2018-19149. 
* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
 2018-11-13 11:28:23 -05:00
Marius Bakke 8c5749f1b5
gnu: python-cffi: Fix test failure on i686. 
* gnu/packages/patches/python-cffi-x87-stack-clean.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libffi.scm (python-cffi)[source](patches): Add it.
 2018-11-11 17:18:05 +01:00
Efraim Flashner 95176544d5
gnu: python-paste: Update to 3.0.4. 
* gnu/packages/python-web.scm (python-paste): Update to 3.0.4.
[source]: Remove patch, add snippet to remove one test.
[native-inputs]: Add python-pytest, python-pytest-runner.
* gnu/packages/patches/python-paste-remove-website-test.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-11-11 11:13:56 +02:00
Efraim Flashner 5ac2b2717f
gnu: python-networkx2: Remove variable. 
* gnu/packages/python.scm (python-networkx2): Remove variable.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-11-11 11:13:55 +02:00
Mark H Weaver 3b14494616
gnu: icecat: Update to 60.3.0-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 60.3.0-gnu1.
[source]: Switch back to the normal source URI.  Remove patches that
are no longer applicable.
* gnu/packages/patches/icecat-CVE-2018-12383.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-11-10 20:28:32 -05:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Kei Kebreau e4b62e229e
gnu: wxmaxima: Update to 18.10.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-11-09 01:09:06 -05:00
Ricardo Wurmus 86c6928ea3
gnu: vsearch: Update to 2.9.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
 2018-11-08 09:46:42 +01:00
Efraim Flashner b44b1f08f6
gnu: hplip: Remove bundled non-free blobs. 
This fixes <https://bugs.gnu.org/32184>.

* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-11-07 23:16:02 +02:00
Marius Bakke 55174e668f
Merge branch 'master' into core-updates 2018-11-07 21:09:57 +01:00
Marius Bakke 1badc85068
gnu: ceph: Update to 13.2.2. 
* gnu/packages/patches/ceph-skip-unittest_blockdev.patch: Adjust for 13.2.2.
* gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file.
* gnu/packages/patches/ceph-detect-rocksdb.patch,
gnu/packages/patches/ceph-volume-respect-PATH.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 13.2.2.
[source]: Don't remove src/dpdk, which has been moved to src/spdk/dpdk and
is purged elsewhere.  Drop bundled rapidjson.  Adjust patch list.
[arguments]: Add "-DWITH_MGR_DASHBOARD_FRONTEND=OFF" and "-DWITH_SPDK=OFF" to
 #:configure-flags.   Drop obsolete "-DWITH_EMBEDDED".  Add workaround for
<https://bugs.gnu.org/30756>.  Remove obsolete test substitution.  Rework
'wrap-python-script' to be less verbose and wrap more scripts.
[native-inputs]: Add GCC-7.
[inputs]: Add OATH-TOOLKIT, RAPIDJSON and PYTHON2-SIX.
 2018-11-07 21:01:12 +01:00
Ricardo Wurmus 152bebd9e0
gnu: gemma: Update to 0.98. 
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gemma-intel-compat.patch: Remove file.
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.
[source]: Remove patch.
[inputs]: Add eigen, gfortran:lib, and openblas.
[arguments]: Add phase "find-eigen".
 2018-11-07 20:26:46 +01:00
Ludovic Courtès 4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms. 
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-06 17:08:46 +01:00
Tobias Geerinckx-Rice 418dd6adb5
gnu: jq: Update to 1.6. 
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-11-06 15:34:36 +01:00
Marius Bakke 3bd83e6db2
gnu: qtbase: Remove obsolete patch. 
This patch is no longer needed since 7930cfc989
was merged to core-updates.

* gnu/packages/patches/qtbase-glibc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/qt.scm (qtbase)[source](patches): Drop it.
 2018-11-06 00:04:31 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Marius Bakke 208e82297c
gnu: xapian: Update to 1.4.9. 
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
 2018-11-05 23:46:38 +01:00
Danny Milosavljevic 722aac1ea1
Merge remote-tracking branch 'origin/wip-rust' into master. 2018-11-02 11:01:45 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-31 21:57:02 +02:00