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Author SHA1 Message Date
Ludovic Courtès 6cb2533b1e gnu: gcal: Update to 4. 
* gnu/packages/gcal.scm (gcal): Update to 4.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès 0bd6f138d9 gnu: gxmessage: Update to 3.4.3. 
* gnu/packages/gxmessage.scm (gxmessage): Update to 3.4.3.
  [inputs]: Use GTK+ instead of GTK+-2.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès af87a551bc gnu: guile-sdl: Update to 0.5.2. 
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.2.
  [arguments]: Augment 'fix-env-and-path' phase to modify 'test/Makefile.in'.
 2015-07-06 00:47:09 +02:00
Ricardo Wurmus d19cf78357 gnu: powertabeditor: Update to 2.0.0-alpha8. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha8.
 2015-07-05 20:57:04 +02:00
Ricardo Wurmus 7e11d11355 gnu: powertabeditor: Enable tests. 
* gnu/packages/music.scm (powertabeditor)[arguments]: Run "pte_tests" in
  "check" phase; add phase "fix-tests".
 2015-07-05 20:57:04 +02:00
Andreas Enge cb6a802c01 gnu: Add LibreSSL. 
* gnu/packages/tls.scm (libressl): New variable.
 2015-07-05 19:03:34 +02:00
Andreas Enge e9aa8d0ccb gnu: Fix ambiguity between openssl package and license in tls module. 
* gnu/packages/tls.scm: Prefix imported licenses.
 2015-07-05 19:03:34 +02:00
Mark H Weaver 90e1cdae0c gnu: icecat: Add support for WebGL, CUPS, Hunspell, startup-notification, etc. 
Also remove most bundled libraries from the source, add comments about
libraries yet to be unbundled, explicitly link libxul.so with libraries that
might try (and fail) to dlopen, and remove the h264parse gstreamer module from
the blacklist.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add snippet.
  [inputs]: Add cups, gdk-pixbuf, glib, hunspell, libcanberra, libgnome,
  libxinerama, libxscrnsaver, mit-krb5, and startup-notification.
  [arguments]<#:configure-flags>: add "--enable-default-toolkit=cairo-gtk2",
  "--enable-pango", "--enable-gio", "--enable-svg", "--enable-canvas",
  "--enable-mathml", "--enable-startup-notification", "--disable-gnomevfs",
  "--disable-gconf", "--disable-gnomeui", and "--enable-system-hunspell".
  Remove outdated comment about "--with-system-bz2" not being used.
  <#:phases>: Use 'modify-phases'.  Add 'remove-h264parse-from-blacklist'
  and 'arrange-to-link-libxul-with-libraries-it-might-dlopen' phases.
 2015-07-05 12:58:56 -04:00
Andreas Enge cc2b77dfc7 gnu: Move content of openssl module into tls module. 
* gnu/packages/openssl.scm (openssl, perl-net-ssleay): Move to...
* gnu/packages/tls.scm: ...here.
* gnu/packages/openssl.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister deleted file.
* gnu/packages/{admin.scm, bittorrent.scm, certs.scm, ci.scm,
  cyrus-sasl.scm, databases.scm, dns.scm, ebook.scm, enlightenment.scm,
  gnunet.scm, libreoffice.scm, links.scm, mail.scm, messaging.scm,
  networking.scm, ntp.scm, openldap.scm, package-management.scm, pdf.scm,
  python.scm, qt.scm, rdesktop.scm, rdf.scm, ruby.scm, ssh.scm,
  synergy.scm, tor.scm, version-control.scm, video.scm, vpn.scm,
  w3m.scm, web.scm, weechat.scm, xiph.scm}: Adapt module import.
 2015-07-05 18:27:24 +02:00
Andreas Enge a7fd7b68a6 gnu: Rename module gnutls to tls. 
* gnu/packages/gnutls.scm: Rename to...
* gnu/packages/tls.scm: ... this.  Change module name accordingly.
* gnu/packages/{admin.scm, cups.scm, curl.scm, dc.scm, dns.scm, emacs.scm,
  ftp.scm, gnome.scm, gnunet.scm, gnupg.scm, gsasl.scm, lynx.scm,
  mail.scm, messaging.scm, package-management.scm, shishi.scm,
  task-management.scm, version-control.scm, video.scm, vpn.scm,
  webkit.scm, weechat.scm, wget.scm, wine.scm, xml.scm}: Adapt module
  import to new name.
* gnu-system.am (GNU_SYSTEM_MODULES): Rename gnutls module to tls.
 2015-07-05 17:09:42 +02:00
Andreas Enge a351c7c157 gnu: avidemux: Drop version 2.5. 
* gnu/packages/video.scm (avidemux-2.5): Delete variable.
 2015-07-05 12:23:12 +02:00
Ben Woodcroft af86047537 gnu: Add prodigal. 
* gnu/packages/bioinformatics.scm (prodigal): New variable.
 2015-07-05 02:56:53 -04:00
Ricardo Wurmus 151714ca8c gnu: shogun: Build with install RPATH. 
* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
  build with install RPATH.
 2015-07-04 17:55:30 +02:00
Ludovic Courtès e4fef9df27 gnu: englightenment: Use https URLs. 
* gnu/packages/enlightenment.scm (efl, elementary, emotion-generic-players,
  terminology, enlightenment): Use https instead of http since the latter
  redirects to the former.
 2015-07-04 17:08:53 +02:00
Efraim Flashner c4f8a7aacc gnu: enlightenment: Update to 0.19.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5.
 2015-07-04 16:50:18 +02:00
Efraim Flashner 88988b41a2 gnu: emotion-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:42 +02:00
Efraim Flashner 7b09969b2e gnu: evas-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:07 +02:00
Efraim Flashner 0179686d13 gnu: elementary: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2.
 2015-07-04 16:48:26 +02:00
Efraim Flashner 7e22d6fee9 gnu: efl: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.14.2.
 2015-07-04 16:47:42 +02:00
pjotrp 022170dca1 gnu: Add ruby-rake-compiler. 
* gnu/packages/ruby.scm (ruby-rake-compiler): New variable.
 2015-07-04 09:47:33 -04:00
Ricardo Wurmus 80e907fe57 gnu: eigen: Update to 3.2.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.5.
 2015-07-04 13:32:52 +02:00
Mark H Weaver 4463c0d216 gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}. 
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-07-04 05:44:10 -04:00
Andreas Enge 257b6c4375 gnu: unrtf: Fix download location. 
* gnu/packages/unrtf.scm (unrtf): Fix download location.
 2015-07-03 22:54:51 +02:00
Ricardo Wurmus b05d1c68bc gnu: r: Replace "atlas" with "openblas". 
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
 2015-07-03 18:45:14 +02:00
Ludovic Courtès 606c638016 gnu: gnutls: Move man3 pages to "doc" output. 
* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 4b0f2ef743 gnu: qt-4: Remove reference from "out" to "doc". 
* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag.
  Add 'move-doc' phase.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ff1989a599 gnu: qt-4: Use a more standard directory layout. 
* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir,
  -plugindir, and -translationdir.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès cba632c4a8 gnu: qt-4: Use 'modify-phases'. 
* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ef2f51a445 gnu: cups-filter: Install backends and filters under lib/cups. 
This ensures that they are stripped during the 'strip' phase, thereby removing
references to GCC and linux-libre-headers that would otherwise be found in
debugging symbols.

* gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and
  pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}.
  (cups)[arguments]: Adjust accordingly.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 6a52df505a gnu: mysql: Remove unnecessary binaries. 
This saves ~42 MiB on x86_64.

* gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 3f289db69d gnu: mysql: Strip references and GCC and other build-time dependencies. 
* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès b5b08878b6 gnu: mutt: Don't retain reference to GCC. 
* gnu/packages/patches/mutt-store-references.patch: New file.
* gnu/packages/mail.scm (mutt)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 9161ba818d gnu: ghostscript: Add "doc" output. 
* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field.
  [outputs]: New field.
  [arguments]: Add 'remove-doc-reference' phase.
 2015-07-03 15:28:06 +02:00
Mark H Weaver 08fa45b190 gnu: gnupg: Enable TLS support. 
* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config.
  [inputs]: Add gnutls.
  (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '().
 2015-07-02 12:35:12 -04:00
Mark H Weaver 5e5fa28e76 gnu: gnupg: Update to 2.1.6. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6.
 2015-07-02 12:35:12 -04:00
Ricardo Wurmus c61fe02cc0 gnu: Add WarpedLMM. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable.
 2015-07-02 11:16:46 +02:00
Ricardo Wurmus f4f4ced8dc gnu: r: Set default pager. 
* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to
  avoid "false" as a default pager.
 2015-07-02 10:50:55 +02:00
Ricardo Wurmus d6902798d1 gnu: powertabeditor: Replace "gcc" with "libiberty". 
* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with
  "libiberty".
 2015-07-01 21:52:08 +02:00
Ricardo Wurmus d231bb3575 gnu: Add Hydrogen. 
* gnu/packages/music.scm (hydrogen): New variable.
 2015-07-01 21:52:08 +02:00
Mark H Weaver 5135aed92b gnu: linux-libre: Update to 4.1.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.1.
 2015-07-01 00:12:39 -04:00
Eric Bavier 58c1806908 gnu: git: Add inputs for send-email. 
* gnu/packages/version-control.scm (package-transitive-propagated-labels*)
  (package-propagated-input-refs): New procedures.
  (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl.
  [outputs]: Add send-email output.
  [arguments]: Add #:modules argument with srfi-1.  In 'split phase, wrap
  git-send-email.
 2015-06-30 05:01:42 -05:00
Eric Bavier c6ee18abb6 gnu: Add perl-authen-sasl. 
* gnu/packages/web.scm (perl-authen-sasl): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier 9fe938c19f gnu: Add perl-gssapi. 
* gnu/packages/web.scm (perl-gssapi): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier b1096f3dbb gnu: Add perl-net-smtp-ssl. 
* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
 2015-06-30 05:01:42 -05:00
Mark H Weaver d2e3caba5d gnu: curl: Disable test that fails on Hydra. 
* gnu/packages/curl.scm (arguments): Disable test 1510.
 2015-06-30 00:17:00 -04:00
Mark H Weaver 4617c2e383 gnu: curl: Update to 7.43.0. 
* gnu/packages/curl.scm (curl): Update to 7.43.0.
 2015-06-30 00:17:00 -04:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier 38f0a2bade gnu: openmpi: Upgrade to 1.8.5. 
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
  [native-inputs]: Add perl.
  [arguments]: Add configure flags for thread support.
 2015-06-29 15:34:36 -05:00
Eric Bavier 579f5c8a58 gnu: hwloc: Move numactl to inputs. 
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
  [inputs]: ...to here.
  [arguments]: New 'refine-libnuma' phase.
 2015-06-29 15:34:36 -05:00
Eric Bavier ce7d9c989d gnu: hwloc: Upgrade to 1.10.1. 
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
  [source]: Use patch.
  [propagated-inputs]: Remove libpci.
  [inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-06-29 15:34:36 -05:00
Eric Bavier 7362371da5 gnu: python-mccabe: Fix license field. 
* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
  'license:expat'.
 2015-06-29 15:34:35 -05:00
Cyril Roelandt e8df8f476e gnu: Add python-flake8. 
* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt a59e017cb1 gnu: Add python-mccabe. 
* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt e31d7f4420 gnu: Add python-pyflakes. 
* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
 2015-06-30 00:07:55 +02:00
Cyril Roelandt d889e6c4d9 gnu: Add python-pep8. 
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
 2015-06-30 00:07:55 +02:00
Ricardo Wurmus 2573410865 gnu: withershins: Use new "libiberty" package. 
* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
   [arguments]: Simplify "find-libiberty" phase.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus 2b6b6d13e7 gnu: Add libiberty. 
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus 74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus 82c370dea1 gnu: Add Blast+. 
* gnu/packages/bioinformatics.scm (blast+): New variable.
 2015-06-29 16:13:28 +02:00
Ludovic Courtès 11906b2c38 gnu: global: Update to 6.5. 
* gnu/packages/code.scm (global): Update to 6.5.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès 622a616e33 gnu: help2man: Update to 1.47.1. 
* gnu/packages/man.scm (help2man): Update to 1.47.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès b1f5fe0eb7 gnu: parallel: Update to 20150622. 
* gnu/packages/parallel.scm (parallel): Update to 20150622.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès dd138fc856 gnu: screen: Update to 4.3.1. 
* gnu/packages/screen.scm (screen): Update to 4.3.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès ce1e4bd58d gnu: texinfo: Add version 6.0. 
* gnu/packages/texinfo.scm (texinfo-6): New variable.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès ab5f49cf6a gnu: gcc-4.8: Update to 4.8.5. 
* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
 2015-06-29 14:42:10 +02:00
Ricardo Wurmus cc6ed47737 gnu: Add plink. 
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
 2015-06-29 12:54:48 +02:00
Eric Bavier 5c852e085d gnu: synergy: Upgrade to 1.7.3. 
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
  [source]: Use github for source download.  Add snippet to remove
  bundled source and binaries.
  [inputs]: Add openssl.
  [arguments]: Copy example configuration files to out during 'install
  phase.
 2015-06-28 12:03:30 -05:00
Ricardo Wurmus b5ad1659ba gnu: Add sfarkxtc. 
* gnu/packages/compression.scm (sfarkxtc): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus 646898b358 gnu: Add sfarklib. 
* gnu/packages/compression.scm (sfarklib): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus fcbeb00b70 gnu: Add Guitarix. 
* gnu/packages/audio.scm (guitarix): New variable.
 2015-06-28 18:59:57 +02:00
Ricardo Wurmus fb029d463d gnu: ardour: Update to 4.1. 
* gnu/packages/audio.scm (ardour): Update to 4.1.
 2015-06-28 14:34:08 +02:00
Ricardo Wurmus 58593975b0 gnu: Add libtar. 
* gnu/packages/compression.scm (libtar): New variable.
 2015-06-28 12:38:46 +02:00
Claes Wallin 60def646bb gnu: Add pv. 
* gnu/package/pv.scm (pv): New file.
 * gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-06-27 17:27:49 +03:00
Ludovic Courtès c92f1c0a33 gnu: Refer to 'gcc' instead of 'gcc-4.9'. 
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
  libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
  (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
  %gcc-static, %gcc-stripped): Likewise.
 2015-06-26 17:06:30 +02:00
Ludovic Courtès 744985761a gnu: youtube-dl: Update to 2015.06.25. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
 2015-06-26 16:56:43 +02:00
Ricardo Wurmus 3a1bfe186d gnu: Add python2-fastlmm. 
* gnu/packages/python.scm (python2-fastlmm): New variable.
 2015-06-26 15:29:01 +02:00
Ricardo Wurmus 0dde623211 gnu: Add python2-pysnptools. 
* gnu/packages/python.scm (python2-pysnptools): New variable.
 2015-06-26 15:29:01 +02:00
Mark H Weaver 1c080cb68a gnu: nettle: Disable ifunc method of library initialization. 
* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
  phase.
 2015-06-25 16:47:59 -04:00
Ricardo Wurmus 19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus eed67cbb8f gnu: Add default GCC and default gfortran. 
* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
 2015-06-25 18:28:54 +02:00
宋文武 96693d1d92 gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'. 
This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base.

* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
  (gst-plugins-base)[native-search-paths]: Remove.
 2015-06-25 10:09:08 +08:00
Ludovic Courtès 31fbf4b637 gnu: pius: Depend on GnuPG 2.0 rather than 2.1. 
* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.
 2015-06-24 18:05:03 +02:00
Ricardo Wurmus 6d149ec349 gnu: julia: Use modify-phases syntax and add return values. 
* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
  build phases and add missing return values.
 2015-06-24 15:34:55 +02:00
Ricardo Wurmus 83a0db178f gnu: r: Use gfortran-4.9. 
* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
  gfortran-4.9.
 2015-06-24 12:03:00 +02:00
Ricardo Wurmus c69a8b7b1b gnu: Add gfortran 4.9. 
* gnu/packages/gcc.scm (gfortran-4.9): New variable.
 2015-06-24 12:03:00 +02:00
Ben Woodcroft c684629f7c gnu: Add hmmer. 
* gnu/packages/bioinformatics.scm (hmmer): New variable.
 2015-06-24 00:39:22 -04:00
宋文武 5a72e4665a gnu: screen: Install the Info manual. 
* gnu/packages/screen.scm (screen)[native-inputs]: New field.
 2015-06-24 09:20:27 +08:00
Ricardo Wurmus ec8da0e25d gnu: Add setBfree. 
* gnu/packages/audio.scm (setbfree): New variable.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus 9e8505343e gnu: ftgl: Propagate "freetype". 
* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from
  "inputs" to "propagated-inputs".
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus 0543c32659 gnu: faust: Remove prebuilt library in snippet. 
* gnu/packages/audio.scm (faust)[arguments]: Remove the phase
  'remove-prebuilt-library...
* gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus 4758eaaa2d gnu: star: Update to 2.4.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.
 2015-06-23 18:37:16 +02:00
Ricardo Wurmus 0ec8b206d4 gnu: miso: Install executables. 
* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
  "setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
  and "python2-pytz".
 2015-06-23 13:13:03 +02:00
Ricardo Wurmus c4325f6269 gnu: Add idr. 
* gnu/packages/bioinformatics.scm (idr): New variable.
 2015-06-23 10:55:52 +02:00
Mark H Weaver f3457e7001 gnu: linux-libre: Update to 4.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.
  [inputs]: Remove gcc-4.9, since it is now the default compiler.
* gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf:
  Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>.
 2015-06-23 02:53:00 -04:00
宋文武 b7a3cf11a8 gnu: Add gnome-klotski. 
* gnu/packages/gnome.scm (gnome-klotski): New variable.
 2015-06-23 14:16:42 +08:00
Mark H Weaver 607a04ae80 gnu: Add gom. 
* gnu/packages/gnome.scm (gom): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver 86d6a893b3 gnu: Add clutter-gst. 
* gnu/packages/gnome.scm (clutter-gst): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver bf7f17bad8 gnu: Add clutter-gtk. 
* gnu/packages/gnome.scm (clutter-gtk): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver fb182b8a44 gnu: Add clutter. 
* gnu/packages/gnome.scm (clutter): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver ba421ab734 gnu: Add cogl. 
* gnu/packages/gnome.scm (cogl): New variable.
 2015-06-23 01:04:53 -04:00
Andreas Enge 22ad39187c gnu: sipwitch: Update to 1.9.8. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.8.
 2015-06-23 00:19:25 +02:00
Ludovic Courtès 89223417fd gnu: commencement: Make a few variables private. 
This removes ambiguity warnings when installing these packages.

* gnu/packages/commencement.scm (glibc-final, gcc-final,
  glibc-utf8-locales-final): Make private.
 2015-06-22 23:17:16 +02:00
Ludovic Courtès 790c3717d2 gnu: imagemagick: Do not retain reference to "doc" output. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Use 'modify-phases'.
  Add 'strip-configure-xml' phase.
 2015-06-22 23:17:16 +02:00
Andreas Enge 8c2dbe3f9d gnu: ucommon: Update to 6.3.4. 
* gnu/packages/telephony.scm (ucommon): Update to 6.3.4.
 2015-06-22 12:40:53 +02:00
Mark H Weaver bf76d98789 Merge branch 'master' into core-updates 2015-06-21 14:30:22 -04:00
Mark H Weaver fc9ff915b3 gnu: jemalloc: Build with gcc-4.8 on i686. 
* gnu/packages/jemalloc.scm (jemalloc)[native-inputs]: When compiling natively
  on i686, add gcc-4.8.
 2015-06-21 14:14:04 -04:00
Mark H Weaver 194782a881 gnu: lame: Build with gcc-4.8 on i686. 
* gnu/packages/mp3.scm (lame)[native-inputs]: When compiling natively on i686,
  add gcc-4.8.
 2015-06-21 14:08:39 -04:00
Ben Woodcroft 12b04cbee6 gnu: Add fasttree. 
* gnu/packages/bioinformatics.scm (fasttree): New variable.
 2015-06-21 03:30:40 -04:00
Mark H Weaver 407838510d gnu: ffmpeg: Update to 2.7.1. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.1.
 2015-06-21 01:18:03 -04:00
Mark H Weaver 4d6d82818a gnu: totem-pl-parser: Add gobject-introspection support. 
* gnu/packages/gnome.scm (totem-pl-parser)[native-inputs]: Add
  gobject-introspection.
 2015-06-20 23:51:41 -04:00
Mark H Weaver 22a6ad6a81 gnu: totem-pl-parser: Move glib, gmime, and libxml2 to propagated-inputs. 
* gnu/packages/gnome.scm (totem-pl-parser)[inputs]: Move glib, gmime, and
  libxml2 to ...
  [propagated-inputs]: ... here.
 2015-06-20 23:51:41 -04:00
Mark H Weaver 180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Mark H Weaver d80b0d4af5 gnu: gnome-doc-utils: Add python2-libxml2 to native-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/gnome.scm (gnome-doc-utils)[native-inputs]: Add
  python2-libxml2.
 2015-06-19 23:03:04 -04:00
Mark H Weaver 264d57b68a gnu: itstool: Add python2-libxml2 to propagated-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/glib.scm (itstool)[propagated-inputs]: Add python2-libxml2.
 2015-06-19 23:02:36 -04:00
Mark H Weaver 9a6953d28a gnu: mdadm: Add compilation fix for gcc-4.9. 
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (mdadm): Add patch.
 2015-06-19 22:42:12 -04:00
Ludovic Courtès 94585e881f gnu: clang: Build without debugging symbols. 
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Add #:build-type.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès fd6ae1b983 gnu: clang: Allow 'clang' to link executables. 
* gnu/packages/patches/clang-libc-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/llvm.scm (clang-from-llvm)[source]: Use it.
  [inputs]: Add "gcc-lib".
  [arguments]. Add -DGCC_INSTALL_PREFIX and -DC_INCLUDE_DIRS to
  #:configure-flags.  Add #:phases argument.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès ef11ac8701 gnu: clang: Add search path specifications. 
* gnu/packages/llvm.scm (clang-from-llvm)[native-search-paths]: New field.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès d0abf829a9 gnu: Add libstdc++ as a standalone package. 
* gnu/packages/gcc.scm (make-libstdc++): New procedure.
  (libstdc++-4.9): New variable.
* gnu/packages/commencement.scm (libstdc++): Add TODO comment.
 2015-06-19 17:23:47 +02:00
pjotrp 9942e8030d gnu: Add ruby 2.1.6 
* gnu/packages/ruby.scm (ruby-2.1): New variable.
 2015-06-19 08:27:27 -04:00
David Thompson 5fd77f3f43 gnu: Make 'mount' interface in static Guile consistent with Guix API. 
Rather than expecting a pointer, the version of 'mount' in
guile-static-stripped now takes a string for the 'options' argument, just like
the 'mount' procedure in (guix build syscalls).

* gnu/packages/patches/guile-linux-syscalls.patch (mount): Expect a string or
  #f for 'options' argument.
* gnu/build/file-systems.scm (mount-file-system): Use new 'mount' interface.
 2015-06-19 07:49:18 -04:00
Ludovic Courtès cbfb893493 gnu: unrtf: Update to 0.21.9. 
* gnu/packages/unrtf.scm (unrtf): Update to 0.21.9.
  [source]: Add 'modules' and 'snippet' fields.
  [arguments]: Remove.
 2015-06-19 11:08:20 +02:00
Ricardo Wurmus b22755be95 gnu: Add Raul. 
* gnu/packages/audio.scm (raul): New variable.
 2015-06-19 09:39:13 +02:00
Mark H Weaver 15b4ffa6f2 Merge branch 'master' into core-updates 2015-06-18 14:09:19 -04:00
Ricardo Wurmus b1fb59d3ef gnu: vamp: Update to 2.6. 
* gnu/packages/audio.scm (vamp): Update to 2.6.
 2015-06-18 16:29:19 +02:00
Ricardo Wurmus b7ed678494 gnu: Add zita-resampler. 
* gnu/packages/audio.scm (zita-resampler): New variable.
 2015-06-18 16:27:32 +02:00
Ricardo Wurmus 777291f007 gnu: Add Faust. 
* gnu/packages/audio.scm (faust): New variable.
 2015-06-18 16:27:32 +02:00
Ricardo Wurmus fe73aef43e gnu: Add Qsynth. 
* gnu/packages/audio.scm (qsynth): New variable.
 2015-06-18 16:27:32 +02:00
Mark H Weaver 8cbb562020 gnu: swig: Update to 3.0.5. 
* gnu/packages/swig.scm (swig): Update to 3.0.5.
 2015-06-18 09:46:55 -04:00
Mark H Weaver 379d41422c gnu: ocaml: Update gcc:lib input to gcc-4.9. 
* gnu/packages/ocaml.scm (ocaml)[inputs]: Use gcc:lib from gcc-4.9.
 2015-06-18 01:33:57 -04:00
Mark H Weaver 2abf678682 Merge branch 'master' into core-updates 2015-06-18 01:32:37 -04:00
Mark H Weaver 040ca34f7e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 684bf7c.
 2015-06-18 00:10:02 -04:00
Mark H Weaver 9ae1e92071 gnu: cpio: Fix symlink-bad-length test. 
* gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio): Add patch.
 2015-06-17 23:19:02 -04:00
Ben Woodcroft 684bf7c7f1 gnu: Add diamond. 
* gnu/packages/bioinformatics.scm (diamond): New variable.
 2015-06-17 19:43:54 -04:00
Ludovic Courtès 2f6d3e417f gnu: ocaml: Don't rely on (gnu packages commencement). 
* gnu/packages/ocaml.scm (ocaml)[inputs]: Use (canonical-package gcc-4.8)
  instead of GCC-FINAL.
 2015-06-18 00:25:48 +02:00
Mark H Weaver ba981db293 gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 2c04921.
 2015-06-17 16:27:06 -04:00
Ricardo Wurmus 86517de69c gnu: miso: Use HTTPS URL. 
* gnu/packages/bioinformatics.scm (miso)[source]: Use "https" protocol for
  downloading the source tarball.
 2015-06-17 15:28:43 +02:00
Ricardo Wurmus 1bbc3b1d2c gnu: bedops: Update to 2.4.14. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.14.
 2015-06-17 14:37:29 +02:00
宋文武 6178d94706 gnu: Add wayland. 
* gnu/packages/freedesktop.scm (wayland): New variable.
 2015-06-17 18:29:15 +08:00
Mark H Weaver 01e64ef504 gnu: talloc: Change source URI to use https. 
* gnu/packages/samba.scm (talloc)[source]: Change URI to use https.
 2015-06-16 14:20:56 -04:00
宋文武 2cba3d6f9e gnu: qt: Add more inputs. 
* gnu/packages/qt.scm (qt)[inputs]: Add cups, libmng, postgresql and unixodbc.
 2015-06-16 23:30:06 +08:00
宋文武 b9ecd5ae24 gnu: Add libmng. 
* gnu/packages/image.scm (libmng): New variable.
 2015-06-16 23:30:06 +08:00
宋文武 a33b8449a0 gnu: qt: Update to 5.4.2. 
* gnu/packages/qt.scm (qt): Update to 5.4.2.
 2015-06-16 23:30:06 +08:00
宋文武 d22b9397e1 gnu: qt-4: Update to 4.8.7. 
* gnu/packages/qt.scm (qt-4): Update to 4.8.7.
 2015-06-16 23:30:06 +08:00
宋文武 9e4552aac2 gnu: talloc: Update to 2.1.2. 
* gnu/packages/samba.scm (talloc): Update to 2.1.2.
 2015-06-16 23:30:05 +08:00
Andreas Enge d571101770 gnu: calibre: Update to 2.30.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.30.0.
 2015-06-16 12:33:08 +02:00
Mark H Weaver 8e28d22c91 gnu: libtiff: Add fixes for several CVEs. 
* gnu/packages/patches/libtiff-CVE-2012-4564.patch,
  gnu/packages/patches/libtiff-CVE-2013-1960.patch,
  gnu/packages/patches/libtiff-CVE-2013-1961.patch,
  gnu/packages/patches/libtiff-CVE-2013-4231.patch,
  gnu/packages/patches/libtiff-CVE-2013-4232.patch,
  gnu/packages/patches/libtiff-CVE-2013-4243.patch,
  gnu/packages/patches/libtiff-CVE-2013-4244.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch,
  gnu/packages/patches/libtiff-CVE-2014-8129.patch,
  gnu/packages/patches/libtiff-CVE-2014-9330.patch,
  gnu/packages/patches/libtiff-CVE-2014-9655.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[source]: Add patches.
 2015-06-16 01:02:01 -04:00
Mark H Weaver 7d02724b7b Merge branch 'master' into core-updates 2015-06-16 01:01:54 -04:00
Mark H Weaver fef3cfaaab gnu: qemu: Add fixes for CVE-2015-{4037,4103,4104,4105,4106}. 
* gnu/packages/patches/qemu-CVE-2015-4037.patch,
  gnu/packages/patches/qemu-CVE-2015-4103.patch,
  gnu/packages/patches/qemu-CVE-2015-4104.patch,
  gnu/packages/patches/qemu-CVE-2015-4105.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
 2015-06-16 00:29:28 -04:00
Mark H Weaver 77ff9e9a99 gnu: git: Update to 2.4.3. 
* gnu/packages/version-control.scm (git, git-manpages): Update to 2.4.3.
 2015-06-16 00:21:48 -04:00
Mark H Weaver 824d9dc301 gnu: ffmpeg: Update to 2.7. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.
  [native-inputs]: Add texinfo.
 2015-06-15 21:53:04 -04:00
Mark H Weaver 4c10c6cbc6 gnu: sqlite: Update to 3.8.10.2. 
* gnu/packages/databases.scm (sqlite): Update to 3.8.10.2.
 2015-06-15 20:37:46 -04:00
David Thompson e778a54950 gnu: Add ruby-multipart-post. 
* gnu/packages/ruby.scm (ruby-multipart-post): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 71d3e2c28d gnu: Add ruby-slop. 
* gnu/packages/ruby.scm (ruby-slop): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 66e2086364 gnu: Add ruby-git. 
* gnu/packages/ruby.scm (ruby-git): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 0808e361b0 gnu: Add ruby-minitest-bacon. 
* gnu/packages/ruby.scm (ruby-minitest-bacon): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 351308356c gnu: Add ruby-minitest-sprint. 
* gnu/packages/ruby.scm (ruby-minitest-sprint): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 2206e94892 gnu: Add ruby-minitest. 
* gnu/packages/ruby.scm (ruby-minitest): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson afbbdf7752 gnu: Add ruby-daemons. 
* gnu/packages/ruby.scm (ruby-daemons): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 4c0aeb44d6 gnu: Add ruby-net-http-persistent. 
* gnu/packages/ruby.scm (ruby-net-http-persistent): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson e259bdf008 gnu: Add ruby-connection-pool. 
* gnu/packages/ruby.scm (ruby-connection-pool): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson de59d31607 gnu: Add ruby-arel. 
* gnu/packages/ruby.scm (ruby-arel): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 96086cc540 gnu: Add ruby-bacon. 
* gnu/packages/ruby.scm (ruby-bacon): New variable.
 2015-06-15 20:27:38 -04:00
Ludovic Courtès d3b4c1358c gnu: tar: Skip tests that rely on undefined unlinkat(2) behavior. 
Fixes <http://bugs.gnu.org/20597>.
Reported by Andrew Patterson <ajpatter@uwaterloo.ca>.

* gnu/packages/patches/tar-skip-unreliable-tests.patch: New file.
* gnu/packages/base.scm (tar)[source](patches): Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-16 00:27:27 +02:00
Ludovic Courtès 25cc3fe703 gnu: gettext: Fix non-deterministic msgunfmt behavior. 
Suggested by Alírio Eyng <alirioeyng@gmail.com>.

* gnu/packages/patches/gettext-msgunfmt.patch: New file.
* gnu/packages/gettext.scm (gnu-gettext)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-15 23:34:01 +02:00
amz3 975b8942a6 gnu: Rename (gnu packages dwm) to (gnu packages suckless). 
* gnu/packages/dwm.scm: Rename this ...
* gnu/packages/suckless.scm: ... to this.
* gnu-system.am (GNU_SYSTEM_MODULES): Change dwm.scm to suckless.scm.
 2015-06-15 17:25:41 -04:00
amz3 3a7334209e gnu: Add st. 
* gnu/packages/dwm.scm (st): New variable.
 2015-06-15 17:25:37 -04:00
Federico Beffa 00f4bd509f gnu: Add haskell-mode. 
* gnu/packages/emacs.scm (haskell-mode): New variable.
 2015-06-15 15:18:11 +02:00
Ludovic Courtès 1f175851e6 gnu: make-bootstrap: Build libbacktrace, required by cc1. 
Fixes <http://hydra.gnu.org/build/506982/nixlog/1/tail-reload>.

* gnu/packages/make-bootstrap.scm (%gcc-static): Remove
  --disable-libbacktrace.  It is needed by cc1-checksum.
 2015-06-15 15:01:55 +02:00
Ricardo Wurmus be0a4c261e gnu: python-scikit-learn: Update to 0.16.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus a98c6eccf8 gnu: orfm: Update to 0.4.1. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.4.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus 2f6b3d2e7e gnu: python-scikit-learn: Use OpenBLAS instead of ATLAS. 
* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
  "openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
  'set-environment-variables, which is only needed when ATLAS is used.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus 719b01c157 gnu: python-scipy: Build with OpenBLAS and lapack. 
* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
  and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
  "set-environment-variables" with "configure-openblas".
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus cba256f8fa gnu: python-numpy-bootstrap: Add lapack to inputs. 
* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
  inputs, because OpenBLAS does not include lapack functions.
 2015-06-15 10:36:41 +02:00
Ricardo Wurmus 2e189eb89f gnu: lv2: Update to 1.12.0. 
* gnu/packages/audio.scm (lv2): Update to 1.12.0.
 2015-06-15 08:07:37 +02:00
Ludovic Courtès 86d7043cad gnu: make-bootstrap: Update patching of gawk's configure. 
* gnu/packages/make-bootstrap.scm (%static-inputs)[gawk]: Change
  "-export-dynamic" to "-Wl,-export-dynamic" to account for current
  'configure' file.
 2015-06-15 00:09:25 +02:00
Ludovic Courtès 8dca238b15 gnu: make-bootstrap: Switch to GCC 4.9. 
* gnu/packages/make-bootstrap.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (%gcc-static): Add --disable-libcilkrts, --disable-libvtv,
  --disable-libbacktrace.
 2015-06-15 00:09:24 +02:00
Mark H Weaver a0d385b052 gnu: screen: Update to 4.3.0. 
* gnu/packages/screen.scm (screen): Update to 4.3.0.
 2015-06-14 12:19:32 -04:00
Mark H Weaver 1a802c7ec2 gnu: openssl: Update to 1.0.2c. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2c.
 2015-06-14 08:49:50 -04:00
Mark H Weaver bcf2971f6e Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/commencement.scm
	gnu/packages/xml.scm
 2015-06-14 08:49:42 -04:00
Ludovic Courtès ec29907160 gnu: gcc: Build libsanitizer's bundled libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Also patch
  libsanitizer/libbacktrace/Makefile.in.
 2015-06-14 14:41:01 +02:00
Mark H Weaver 7871724df7 gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-13 23:01:07 -04:00
Mark H Weaver 0ad8f76f7f gnu: perl-net-ssleay: Disable test that fails with openssl-1.0.2b. 
* gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
 2015-06-13 23:01:07 -04:00
Mark H Weaver 4c50e5ab3a gnu: python: Disable ssl test that fails with openssl-1.0.2b. 
* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
 2015-06-13 23:01:07 -04:00
Ludovic Courtès b5616bc33d ld-wrapper: Ignore .so files specified after "-plugin" for RUNPATH purposes. 
Reported by Mark H Weaver
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20102#58>.

* gnu/packages/ld-wrapper.in (library-files-linked): Handle "-plugin"
  similarly to "-dynamic-linker".
 2015-06-14 01:00:27 +02:00
Ludovic Courtès 932e7204af gnu: guix: Wrap 'guix' so GUILE_LOAD_PATH includes the dependencies. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Add
  'wrap-program' phase.
 2015-06-13 22:33:37 +02:00
Ludovic Courtès 02c2cf43ce gnu: guix: Use 'modify-phases'. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Use
  'modify-phases' instead of 'alist-cons-before'.
 2015-06-13 22:33:37 +02:00
Eric Bavier 0061079a19 gnu: Add hydra. 
* gnu/packages/ci.scm: New file.
* gnu/packages/patches/hydra-automake-1.15.patch,
  gnu/packages/patches/hydra-disable-darcs-test.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add file.
  (dist_patch_DATA): Add patches.
 2015-06-13 08:05:01 -05:00
Eric Bavier 6e545bbf55 gnu: Add Catalyst-Authentication-Store-DBIx-Class. 
* gnu/packages/web.scm (perl-catalyst-authentication-store-dbix-class):
  New variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier 514214cbe5 gnu: Add Catalyst-Plugin-Authorization-Roles. 
* gnu/packages/web.scm (perl-catalyst-plugin-authorization-roles): New
  variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier 1937e38d06 gnu: Add Set-Object. 
* gnu/packages/perl.scm (perl-set-object): New variable.
 2015-06-13 08:05:00 -05:00
Ricardo Wurmus 8b9ec354ed gnu: Add powertabeditor. 
* gnu/packages/music.scm (powertabeditor): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus 14a17ef6f4 gnu: catch-framework: Update to 1.1.3. 
* gnu/packages/check.scm (catch-framework): Update to 1.1.3.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus cc45cff83a gnu: Add rtmidi. 
* gnu/packages/audio.scm (rtmidi): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus 6ce212b868 gnu: Add pugixml. 
* gnu/packages/xml.scm (pugixml): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus ccb8da2654 gnu: Add RapidJSON. 
* gnu/packages/web.scm (rapidjson): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus 76e146384c gnu: Add withershins. 
* gnu/packages/code.scm (withershins): New variable.
 2015-06-12 23:01:33 +02:00
Manolis Ragkousis 16cae799db gnu: patch: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/patch-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-12 15:46:25 +03:00
Ben Woodcroft 1e44cf8b0f gnu: Add OrfM. 
* gnu/packages/bioinformatics.scm (orfm): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 47da6268c4 gnu: icedtea7: Bootstrap with GCJ. 
* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
  with IcedTea6.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 36742f4389 gnu: Add Couger. 
* gnu/packages/bioinformatics.scm (couger): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 0931c6091c gnu: Add randomjungle. 
* gnu/packages/machine-learning.scm (randomjungle): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 71f80f5487 gnu: Add python-libsvm. 
* gnu/packages/machine-learning.scm (python-libsvm): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 741115b649 gnu: Add libsvm. 
* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus e0a02cb21f gnu: ngs-sdk: Update to version 1.1.1. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1.
 2015-06-12 12:57:29 +02:00
Eric Bavier 48d21d6cd6 gnu: ghc: Patch runtime references to /bin/sh. 
* gnu/packages/haskell.scm (ghc)[arguments]: Rename
  'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'.
  Patch source files that reference /bin/sh.
 2015-06-11 18:55:49 -05:00
Mark H Weaver dc7b1817f6 Revert "gnu: openssl: Update to 1.0.2b." 
This reverts commit 4f467e33de.
 2015-06-12 01:46:03 -04:00
Mark H Weaver 4f467e33de gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-12 01:25:23 -04:00
Ludovic Courtès e21adc768e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to a43b55f.
  [source]: Add 'file-name' field.
  [native-inputs]: Add HELP2MAN.
 2015-06-11 23:33:32 +02:00
Ludovic Courtès 0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver b45ce07a8a gnu: gnupg: Update to 2.1.5. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5.
 2015-06-11 14:39:22 -04:00
宋文武 4510b2da3e gnu: Add librest. 
* gnu/packages/gnome.scm (librest): New variable.
 2015-06-11 23:30:54 +08:00
Mark H Weaver 8b1c8e4e27 gnu: inetutils: Update to 1.9.4. 
* gnu/packages/admin.scm (inetutils): Update to 1.9.4.
 2015-06-11 10:08:01 -04:00
Mark H Weaver 1492801655 Merge branch 'master' into core-updates 2015-06-10 17:50:27 -04:00
Mark H Weaver 1511e02355 gnu: nettle: Update to 3.1.1. 
* gnu/packages/nettle.scm (nettle): Update to 3.1.1.
 2015-06-10 17:49:11 -04:00
Mark H Weaver 70ca2e94d1 gnu: which: Update to 2.21. 
* gnu/packages/base.scm (which): Update to 2.21.
 2015-06-10 17:39:08 -04:00
Ludovic Courtès 2a1552c608 gnu: cross-base: Do not strip cross-gcc. 
Fixes a regression introduced in 9063ef0 whereby #:strip-binaries? would be
left to #t, leading to an invalid cross-built libgcc.a (see
<http://hydra.gnu.org/build/492479/nixlog/1/tail-reload>.)

* gnu/packages/cross-base.scm (cross-gcc-arguments): Add #:strip-binaries? #f
  unconditionally.  Replace 'install' phase to use "make install-strip".
 2015-06-10 23:19:30 +02:00
Mark H Weaver 3dbb0e5f8b gnu: qemu: Add fix for CVE-2015-3209. 
* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
 2015-06-10 15:42:16 -04:00
Mark H Weaver e51943f886 gnu: cups: Update to 2.0.3. 
* gnu/packages/cups.scm (cups): Update to 2.0.3.
 2015-06-10 14:50:28 -04:00
Mark H Weaver 63398a25ba gnu: linux-libre: Update to 4.0.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.0.5.
 2015-06-10 11:37:37 -04:00
Ludovic Courtès ab999c2516 gnu: commencement: Remove "debug" output of GCC-FINAL. 
Fixes a regression introduced in 9063ef0.

* gnu/packages/commencement.scm (gcc-final)[outputs]: New field.
 2015-06-10 09:37:36 +02:00
Ludovic Courtès d0b62698c9 gnu: gcc: Build libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments] <pre-configure>: Remove -Werror
  from libbacktrace/configure.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès 9063ef0f79 gnu: gcc: Add "debug" output, debugging symbols of libraries. 
* gnu/packages/gcc.scm (gcc-4.7)[install-target]: Remove.
  [outputs]: Add "debug".
  [arguments]: Remove #:strip-binaries?.  Remove 'install' phase.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès 811974925d gnu: gcc: Do not add -rpath=LIBDIR/lib64 to the "lib" spec. 
* gnu/packages/gcc.scm (gcc-4.7): Remove unneeded LIBDIR/lib64 from
  GNU_USER_TARGET_LIB_SPEC.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès e58652502b gnu: make-bootstrap: Adjust gawk patch to 4.1.3. 
* gnu/packages/patches/gawk-shell.patch: Update for gawk 4.1.3.
 2015-06-09 22:32:15 +02:00
Manolis Ragkousis 30347caae7 gnu: guile-static: Use Linux syscalls only on Linux-based systems. 
* gnu/packages/patches/guile-linux-syscalls.patch: Use Linux
  syscalls only on Linux-based systems.
 2015-06-09 22:48:10 +03:00
宋文武 329d13b8ea gnu: mysql: Update to 5.6.25. 
* gnu/packages/databases.scm (mysql): Update to 5.6.25.
  [source]: Use 'version-major+minor'.
  [build-system]: Change to cmake-build-system.  Adjust arguments
  accordingly.
  [inputs]: Add libaio.  Remove procps.  Move perl to 'native-inputs'.
 2015-06-09 18:16:14 +08:00
Mark H Weaver 0705f79c6f gnu: Add proof-general. 
* gnu/packages/ocaml.scm (proof-general): New variable.
 2015-06-08 20:08:50 -04:00
Mark H Weaver f8badf151b gnu: commencement: Use our Binutils as soon as possible. 
* gnu/packages/commencement.scm (binutils-boot0)[arguments]: Add
  'add-symlinks' phase.
 2015-06-08 16:14:03 -04:00
Manolis Ragkousis 56eba3d152 gnu: sed: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/sed-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-08 22:26:28 +03:00
Mark H Weaver ae9b96c784 gnu: youtube-dl: Update to 2015.06.04.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1.
 2015-06-08 15:07:30 -04:00
宋文武 c769cf9f2a gnu: evince: Update to 3.16.1, add more inputs. 
* gnu/packages/gnome.scm (evince): Update to 3.16.1.
  [inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret.

Co-authored-by: David Hashe <david.hashe@dhashe.com>
 2015-06-08 20:42:31 +08:00
宋文武 faf713b9d0 gnu: geoclue: Update to 2.2.0. 
* gnu/packages/gnome.scm (geoclue): Update to 2.2.0.
 2015-06-08 18:02:28 +08:00
Ricardo Wurmus dbdfe51598 gnu: python-numpy: Build against OpenBLAS. 
* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
  "atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
  OpenBLAS.

Modified-By: Mark H Weaver <mhw@netris.org>
 2015-06-07 17:30:40 -04:00
Mark H Weaver 716e20a2bc gnu: icecat: Update to 31.7.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1.  Remove patches.
 2015-06-06 08:02:45 -04:00
Mark H Weaver 8850303e76 gnu: tor: Update to 0.2.6.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.6.8.
  [native-inputs]: Add python-2.
 2015-06-06 00:51:10 -04:00
Ludovic Courtès 97cc51f876 gnu: Add magit-svn. 
* gnu/packages/emacs.scm (magit-svn): New variable.
 2015-06-05 12:13:38 +02:00
Mark H Weaver 1973183b63 gnu: Add coq. 
* gnu/packages/ocaml.scm (coq): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver d6b7b5edec gnu: Add hevea. 
* gnu/packages/ocaml.scm (hevea): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver 83f4dc36e2 gnu: Add camlp5. 
* gnu/packages/ocaml.scm (camlp5): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver 69b8f08cbd gnu: ocaml: Update to 4.02.1. 
* gnu/packages/ocaml.scm (ocaml)[version]: Update to 4.02.1.
  [source]: Use 'version-major+minor'.  Use .xz tarball.
  [home-page]: Update URI.
  [license]: gpl2 -> lgpl2.0.
  [inputs]: Add libx11, gcc:lib, and zlib.  Remove perl.
  [native-inputs]: New field, with perl and pkg-config.
  [arguments]: In #:modules, remove (srfi srfi-1), add (web server).  Use
  'modify-phases'.  Enable parallel build.  Add 'patch-/bin/sh-references' and
  'prepare-socket-test' phases.  Rename 'check-after-install' phase to
  'check'.  Use 'with-directory-excursion' in 'check' phase.  Remove unused
  keyword arguments from custom phases.
 2015-06-05 00:58:53 -04:00
宋文武 4a79e256f0 gnu: Add devhelp. 
* gnu/packages/gnome.scm (devhelp): New variable.
 2015-06-05 12:46:20 +08:00
宋文武 4becc79273 gnu: guile-opengl: Patch dynamic-link call for 'libGLU' to glu. 
* gnu/packages/gl.scm (guile-opengl)[inputs]: Add glu.
  [arguments]: Patch dynamic-link call for 'libGLU' to glu instead of
  mesa in the 'patch-dynamic-link' phase.
 2015-06-05 12:17:18 +08:00
Andreas Enge 16c62e1fc4 gnu: Add LibreOffice. 
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice, libreoffice):
  New variables.

Co-authored-by: John Darrington <jmd@gnu.org>
 2015-06-04 22:59:18 +02:00
Ludovic Courtès 8d866b96f7 gnu: Switch to GCC 4.9 as the default cross-compiler. 
* gnu/packages/cross-base.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
 2015-06-04 18:07:26 +02:00
Ludovic Courtès de4ac32527 gnu: Switch to GCC 4.9 as the default compiler. 
* gnu/packages/commencement.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (gcc-boot0)[arguments]: Add --disable-libcilkrts --disable-libvtv.
 2015-06-04 18:05:52 +02:00
Ludovic Courtès b15389e159 gnu: linux-libre-headers: Do not retain reference to the bootstrap tools. 
* gnu/packages/linux.scm (linux-libre-headers)[install-phase]: Remove
  ".install" files from the output.
  [arguments]: Add #:allowed-references.
 2015-06-04 14:37:53 +02:00
Ludovic Courtès 67dfa1986d gnu: findutils: Use /var as the localstatedir, for 'updatedb'. 
* gnu/packages/patches/findutils-localstatedir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (findutils)[source]: Use it.
  [arguments]: Pass --localstatedir=/var.
 2015-06-04 12:49:43 +02:00
Ludovic Courtès 696062b1f0 gnu: perl: Strip the DSOs. 
* gnu/packages/perl.scm (perl)[arguments]: Add 'make-shared-objects-writable'
  phase.
 2015-06-04 11:24:07 +02:00
Ludovic Courtès f683d67d66 gnu: perl: Use 'modify-phases'. 
* gnu/packages/perl.scm (perl)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-06-04 11:18:59 +02:00
Ludovic Courtès 2068559ba0 gnu: gcc: Move patch upstream status in the patch itself. 
* gnu/packages/patches/gcc-arm-link-spec-fix.patch: Add bug and patch URLs.
* gnu/packages/gcc.scm (gcc-4.8): Remove them.
 2015-06-04 09:30:20 +02:00
Ludovic Courtès 946007f9ce gnu: gawk: Update to 4.1.3. 
* gnu/packages/gawk.scm (gawk): Update to 4.1.3.
 2015-06-04 08:58:23 +02:00
Ludovic Courtès ad29c6f2e5 gnu: guile-reader: Update to 0.6.1. 
* gnu/packages/guile.scm (guile-reader)[source, version]: Update to 0.6.1.
  [arguments]: Remove #:locale argument.
 2015-06-03 11:47:36 +02:00
Ricardo Wurmus c0b1909106 gnu: Add Data::Stag. 
* gnu/packages/perl.scm (perl-data-stag): New variable.
 2015-06-03 10:41:21 +02:00
Ricardo Wurmus 458ee7dcf0 gnu: Add IO::String. 
* gnu/packages/perl.scm (perl-io-string): New variable.
 2015-06-03 10:41:13 +02:00
Mark H Weaver de8a1818fd gnu: gnupg-2.0: Update to 2.0.28. 
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.28.
 2015-06-02 19:18:29 -04:00
Mark H Weaver ed8a724b33 gnu: gnu-pw-mgr: Update to 1.4. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.4.  Use .xz tarball.
  Move 'which' to native-inputs.  Add 'autogen' to native-inputs.
 2015-06-02 15:43:34 -04:00
Mark H Weaver 9a59ce2455 gnu: sharutils: Update to 4.15.2. 
* gnu/packages/compression.scm (sharutils): Update to 4.15.2.
 2015-06-02 15:43:34 -04:00
Ricardo Wurmus e7c097306d gnu: Add HTSlib. 
* gnu/packages/bioinformatics.scm (htslib): New variable.
 2015-06-02 14:30:14 +02:00
Ricardo Wurmus 132b4c8c23 gnu: ncbi-vdb: Use "i386" instead of "i686" in directory name. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Copy libraries from
  "linux/gcc/i386" directory instead of "linux/gcc/i686" when building on
  i686.
 2015-06-02 14:26:14 +02:00
Mark H Weaver 20a946664d gnu: flex: Fix native-inputs field. 
This is a followup to ba42199eb3 and dedaf76f66.

* gnu/packages/flex.scm (flex)[native-inputs]: Add another layer of
  parentheses.
 2015-05-31 21:18:54 -04:00
宋文武 7ce3224247 gnu: libxml2: Build python bindings separately. 
* gnu/packages/xml.scm (libxml2)[native-inputs]: Remove python.
  [arguments]: Remove.
  (python-libxml2, python2-libxml2): New variables.
 2015-06-01 08:59:22 +08:00
宋文武 10ac0f9f24 gnu: libxml2: Update to 2.9.2. 
* gnu/packages/xml.scm (libxml2): Update to 2.9.2.
 2015-06-01 08:59:15 +08:00
Christopher Allan Webber 93e7199b35 gnu: Add guile-gdbm-ffi. 
* gnu/packages/guile.scm (guile-gdbm-ffi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-05-31 23:44:09 +02:00
Andreas Enge c687f73110 gnu: avidemux: Add output lib dir to rpath. 
* gnu/packages/video.scm (avidemux): Set -DCMAKE_SHARED_LINKER_FLAGS
    in the call to cmake.
 2015-05-31 23:31:50 +02:00
Ludovic Courtès 97c15a297d gnu: tcsh: Add alternate URL for old tarballs. 
Reported by Alexander Vorobiev <alexander.vorobiev@gmail.com>.

* gnu/packages/tcsh.scm (tcsh)[source]: Add alternate URL.
 2015-05-31 22:39:48 +02:00
David Thompson 98b87b82be gnu: Add ruby-useragent. 
* gnu/packages/ruby.scm (ruby-useragent): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson 2cbc105bb3 gnu: Add bundler. 
* gnu/packages/ruby.scm (bundler): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson d4fde1f239 gnu: Add ruby-rspec. 
* gnu/packages/ruby.scm (ruby-rspec): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson 4f2a0cac7f gnu: Add ruby-rspec-mocks. 
* gnu/packages/ruby.scm (ruby-rspec-mocks): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson e69620098b gnu: Add ruby-rspec-expectations. 
* gnu/packages/ruby.scm (ruby-diff-lcs-for-rspec, ruby-rspec-expectations):
  New variables.
 2015-05-29 20:05:57 -04:00
David Thompson eb0c2dd62f gnu: Add ruby-rspec-core. 
* gnu/packages/ruby.scm (ruby-rspec-support, ruby-rspec-core): New variables.
 2015-05-29 20:05:57 -04:00
Ludovic Courtès 969ee403c8 gnu: openldap: Update list of source URLs. 
* gnu/packages/openldap.scm (openldap)[source]: Remove former URI (domain name
  vanished) and add an up-to-date list of URLs.  Reported by Alexander
  Vorobiev <alexander.vorobiev@gmail.com>.
 2015-05-29 22:54:04 +02:00
Andreas Enge df00e14892 gnu: calibre: Update to 2.29.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.29.0. Add input openssl.
 2015-05-29 21:52:20 +02:00
Mark H Weaver 86e3e370e3 gnu: nss: Update to 3.19.1. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.19.1.
  [properties]: Set the timeout to 40 hours.
 2015-05-29 14:33:32 -04:00
宋文武 5ff408d998 python-pillow: Update to 2.8.1, remove duplicated ones. 
* gnu/packages/python.scm (python-pillow): Update to 2.8.1.
  [inputs]: Add freetype and libwebp.
  (python-pillow, python2-pillow): Remove duplicated variables.
 2015-05-29 21:01:42 +08:00
宋文武 0b4eb42e8a gnu: webkitgtk: Update to 2.8.3. 
The version (2.8.9) mentioned in the previous commit (e7e8ea0) message
was wrong.  Should be '2.4.9'.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.8.3.
 2015-05-29 18:06:08 +08:00
宋文武 e7e8ea069e gnu: webkitgtk-2.4: Update to 2.8.9, build with gtk3. 
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.8.9, build with gtk3.
  Move flex and which to 'native-inputs'.  Remove #:configure-flags.
  (webkitgtk/gtk+-2): New variable.
* gnu/packages/gnucash.scm (gnucash): Use webkitgtk/gtk+-2.
* gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.

Co-authored-by: Feng Shu <tumashu@163.com>
 2015-05-29 16:05:49 +08:00
Taylan Ulrich Bayırlı/Kammer 51960939a4 gnu: chibi-scheme: Update to 0.7.3. 
* gnu/packages/scheme.scm (chibi-scheme): Update to 0.7.3.  Change URL.
 2015-05-27 21:13:15 +02:00
Ricardo Wurmus 365c815389 gnu: Add edirect. 
* gnu/packages/bioinformatics.scm (edirect): New variable.
 2015-05-27 17:42:40 +02:00
Ricardo Wurmus 628bd9b8a7 gnu: shogun: Remove non-free source files. 
* gnu/packages/bioinformatics.scm (shogun)[source]: Add snippet to remove
  non-free sources.
 2015-05-27 10:56:27 +02:00
Mark H Weaver 9aafbc0c13 gnu: Add wxmaxima. 
* gnu/packages/maths.scm (wxmaxima): New variable.
 2015-05-26 10:24:11 -04:00
Mark H Weaver 77af7b2407 gnu: maxima: Update to 5.36.1. 
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1.  Add patch.
 2015-05-26 10:23:38 -04:00
Mark H Weaver d4e17f841c gnu: imagemagick: Update to 6.9.1-3. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.1-3.
 2015-05-26 10:23:28 -04:00
宋文武 6344feb318 Merge branch 'gtk-rebuild' 2015-05-26 17:44:18 +08:00
Andreas Enge 0899144f79 gnu: Add xmlsec. 
* gnu/packages/xml.scm (xmlsec): New variable.
 2015-05-24 22:55:32 +02:00
Ricardo Wurmus 4a1bf0907b gnu: seahorse: Add SSH support. 
* gnu/packages/gnome.scm (seahorse)[inputs]: Add "openssh".
 2015-05-24 12:40:56 +02:00
Ricardo Wurmus df90c701b3 gnu: Add seahorse. 
* gnu/packages/gnome.scm (seahorse): New variable.
 2015-05-24 12:00:17 +02:00
Ricardo Wurmus e99a3d6fd2 gnu: Add gnome-keyring. 
* gnu/packages/gnome.scm (gnome-keyring): New variable.
 2015-05-24 12:00:17 +02:00
Ricardo Wurmus 8ff4901196 gnu: Add GCR. 
* gnu/packages/gnome.scm (gcr): New variable.
 2015-05-24 12:00:17 +02:00
Mark H Weaver 30f9cbb072 Merge branch 'master' into gtk-rebuild 2015-05-23 22:24:19 -04:00
Manolis Ragkousis 94d915d0b0 gnu: base: Fix a bug that occurs in non-Linux systems. 
* gnu/packages/base.scm (tar): Apply patch.
* gnu/packages/patches/tar-d_ino_in_dirent-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-05-23 22:24:25 +03:00
Andreas Enge 53142109a0 gnu: bluez: Install the library and header files. 
* gnu/packages/linux.scm (bluez)[arguments]: Add --enable-library to
  #:configure-flags.
 2015-05-23 20:39:57 +02:00
Andreas Enge 2e88d113aa gnu: dbus-glib: Propagate inputs dbus and glib. 
* gnu/packages/glib.scm (dbus-glib): Propagate inputs dbus and glib.
* gnu/packages/audio.scm (patchage),
  gnu/packages/gnuzilla.scm (icecat),
  gnu/packages/python.scm (python-dbus): Drop inputs dbus and glib.
* gnu/packages/gnome.scm (colord, gconf, gnome-vfs, upower),
  gnu/packages/mail.scm (claws-mail),
  gnu/packages/messaging.scm (hexchat),
  gnu/packages/wicd.scm (wicd): Drop input dbus.
 2015-05-23 17:12:00 +02:00
Mark H Weaver f28084285a gnu: gnutls: Update to 3.4.1. 
* gnu/packages/patches/gnutls-fix-duplicate-manpages.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnutls.scm (gnutls): Update to 3.4.1.  Remove patch.
 2015-05-23 00:17:48 -04:00
宋文武 281c21567d gnu: librsvg: Update to 2.40.9. 
* gnu/packages/gnome.scm (librsvg): Update to 2.40.9.
 2015-05-23 11:31:30 +08:00
宋文武 14eeefa2dd gnu: Add adwaita-icon-theme. 
* gnu/packages/gnome.scm (adwaita-icon-theme): New variable.
 2015-05-23 11:26:09 +08:00
宋文武 52b8beb109 gnu: gtk+: Add SVG support to 'gtk-encode-symbolic-svg'. 
* gnu/packages/gtk.scm (gtk+)[inputs]: Add librsvg.
  [arguments]: Add 'wrap-gtk-encode-symbolic-svg' phase.
 2015-05-23 11:21:49 +08:00
Mark H Weaver 936715c9f4 gnu: gnutls: Update to 3.4.1. 
* gnu/packages/patches/gnutls-fix-duplicate-manpages.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnutls.scm (gnutls): Update to 3.4.1.  Remove patch.
 2015-05-22 23:00:30 -04:00
宋文武 508891e62a gnu: gtk+: Update to 3.16.3. 
* gnu/packages/gtk.scm (gtk+): Update to 3.16.3.
 2015-05-23 10:54:05 +08:00
宋文武 62b7015be1 gnu: gtk+-2: Update to 2.24.28. 
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.28.
 2015-05-23 10:46:43 +08:00
宋文武 a30a0455e9 gnu: harfbuzz: Enable GObject integration. 
* gnu/packages/gtk.scm (harfbuzz): Add glib to propagated-inputs.
  [native-inputs]: Add gobject-introspection.
  [arguments]<#:configure-flags>: Add "--with-gobject".
 2015-05-23 10:25:44 +08:00
宋文武 ac462e52a8 gnu: harfbuzz: Update to 0.9.40. 
* gnu/packages/gtk.scm (harfbuzz): Update to 0.9.40.
 2015-05-23 10:13:50 +08:00
Mark H Weaver 8605321dd6 gnu: postgresql: Update to 9.3.7. 
* gnu/packages/databases.scm (postgresql): Update to 9.3.7.
 2015-05-22 15:39:08 -04:00
Ricardo Wurmus 748cef5be9 gnu: Add python-rq. 
* gnu/packages/python.scm (python-rq, python2-rq): New variables.
 2015-05-22 15:23:23 +02:00
Ricardo Wurmus 5394a6a653 gnu: Add python-redis. 
* gnu/packages/python.scm (python-redis, python2-redis): New variables.
 2015-05-22 15:23:23 +02:00
Ricardo Wurmus 12c270ddd4 gnu: Add python-click. 
* gnu/packages/python.scm (python-click, python2-click): New variables.
 2015-05-22 15:23:23 +02:00
Ricardo Wurmus 66e3eff1e3 gnu: Add rsem. 
* gnu/packages/bioinformatics.scm (rsem): New variable.
* gnu/packages/patches/rsem-makefile.patch: New file.
 2015-05-22 13:14:29 +02:00
Ludovic Courtès 6fb4fb717d gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to c2ee19e.
 2015-05-22 11:51:12 +02:00
Ricardo Wurmus 4520354282 gnu: Add python-pyzmq. 
* gnu/packages/python.scm (python-pyzmq, python2-pyzmq): New variables.
 2015-05-22 11:03:00 +02:00
Mark H Weaver 56120263a9 gnu: youtube-dl: Update to 2015.05.20. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.05.20.
 2015-05-22 04:32:33 -04:00
Mark H Weaver 4de02f36ac gnu: fuse: Add fix for CVE-2015-3202. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (fuse): Add patch.
 2015-05-22 00:10:43 -04:00
Manolis Ragkousis dedaf76f66 gnu: flex: Add missing quasiquote. 
* gnu/packages/flex.scm (flex): Add missing quasiquote at native-inputs.
 2015-05-21 18:00:37 +03:00
Manolis Ragkousis ba42199eb3 gnu: flex: Add m4 as a native input. 
* gnu/packages/flex (flex): Add m4 as a native input.
 2015-05-21 15:30:06 +03:00
Manolis Ragkousis 74ed6dafb5 gnu: bison: Add m4 as a native input. 
* gnu/packages/bison (bison): Add m4 as a native input.
 2015-05-21 15:29:53 +03:00
宋文武 35481e8be6 gnu: Add fizmo. 
* gnu/packages/games.scm (fizmo): New variable.
 2015-05-21 20:14:02 +08:00
Ricardo Wurmus 9099e88182 gnu: r: Apply patch to fix linking against R. 
* gnu/packages/patches/r-fix-15899.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r)[source]: Use it.
 2015-05-21 11:54:46 +02:00
Paul van der Walt afb925175e gnu: zathura: Update to 0.3.3. 
* gnu/packages/pdf.scm (zathura): Update to 0.3.3.
 2015-05-21 01:07:57 +02:00
Paul van der Walt 90ab5dd259 gnu: girara: Update to 0.2.4. 
* gnu/packages/gtk.scm (girara): Update to 0.2.4.
 2015-05-21 01:06:59 +02:00
Andreas Enge 2e6ecc5c21 gnu: gconf: Propagate input glib. 
* gnu/packages/gnome.scm (gconf): Propagate input glib.
  (gnome-vfs): Drop input glib.
  (libgnome): Drop propagated input glib.
* gnu/packages/ibus.scm (ibus): Drop input glib.
 2015-05-20 23:46:17 +02:00
Andreas Enge 7f18257bea gnu: Add lpsolve. 
* gnu/packages/maths.scm (lpsolve): New variable.
 2015-05-20 23:21:50 +02:00
Mark H Weaver 3a6fb858ad gnu: bitlbee: Update to 3.4. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.  Add patch.
  [inputs]: Remove 'zlib'.
 2015-05-20 16:07:09 -04:00
Mark H Weaver 87158e851f Revert "gnu: mozjs: Mark as unsupported on mips64el-linux." 
This reverts commit 4bfeb0ca74.
 2015-05-20 14:02:12 -04:00
David Thompson d620ea889c gnu: Add sfxr. 
* gnu/packages/game-development.scm (sfxr): New variable.
 2015-05-20 12:13:04 -04:00
Ricardo Wurmus 5b5ea159ac gnu: openblas: Disable DYNAMIC_ARCH on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
  building for MIPS.  Also make non-substitutable for MIPS.
 2015-05-20 13:30:24 +02:00
宋文武 10f366e38a gnu: feh: Update to 2.13. 
* gnu/packages/feh.scm (feh): Update to 2.13.
 2015-05-20 16:23:43 +08:00
Alexander Shendi bc11c72c98 gnu: mit-scheme: Add libx11 to inputs. 
* gnu/packages/scheme.scm (mit-scheme)[inputs]: Add libx11.
 2015-05-19 18:28:07 -04:00
Christopher Allan Webber f906d30ced gnu: Add guile-emacs and guile-for-guile-emacs. 
* gnu/packages/guile.scm (guile-for-guile-emacs): New variable.
* gnu/packages/emacs.scm (guile-emacs): New variable.
 2015-05-19 22:14:52 +02:00
Mark H Weaver 52031c0abf gnu: xorriso: Update to 1.4.0. 
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.0.
 2015-05-19 15:29:01 -04:00
Eric Bavier ef698bf996 gnu: fltk: Use system zlib, libjpeg, and libpng. 
* gnu/packages/fltk.scm (fltk)[inputs]: Add libjpeg, libpng, and zlib.
  [arguments]: Add 'patch-config' phase.
 2015-05-19 10:09:09 -05:00
宋文武 d692678fee gnu: Add xfce4-clipman-plugin. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin): New variable.
  (xfce)[propagated-inputs]: Add it.
 2015-05-19 22:28:15 +08:00
宋文武 e53fc0c8a3 gnu: gstreamer: Add search patch specification for 'GST_PLUGIN_SYSTEM_PATH'. 
* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
 2015-05-19 17:28:12 +08:00
Andreas Enge 187731a596 gnu: glu: Propagate input mesa. 
* gnu/packages/gl.scm (glu): Propagate input mesa.
 2015-05-18 23:20:00 +02:00
Ludovic Courtès 6f450b87de gnu: gcc-toolchain: Remove 'bin/sh' and 'bin/bash'. 
* gnu/packages/commencement.scm (gcc-toolchain)[arguments] <#:builder>: Delete
  'bin/sh' and 'bin/bash'.
 2015-05-18 23:19:21 +02:00
Mark H Weaver 5a76830853 gnu: linux-libre: Update to 4.0.4. 
* gnu/packages/linux.scm (linux-libre): Update to 4.0.4.
 2015-05-18 16:28:55 -04:00
Ludovic Courtès d41a8a07b2 gnu: magit: Install .el files directly under share/emacs/site-lisp. 
Fixes a regression introduced in 7e4871b.

* gnu/packages/emacs.scm (magit)[arguments]: Add #:make-flags.
 2015-05-17 21:25:09 +02:00
Ludovic Courtès 7e4871ba9c gnu: magit: Update to 1.4.1. 
* gnu/packages/emacs.scm (magit)[source, version]: Update to 1.4.1
  [propagated-inputs]: New field.
  [arguments]: Add #:test-target.  Add 'augment-load-path' phase.
 2015-05-17 14:12:22 +02:00
Ludovic Courtès 2c047b4a67 gnu: magit: Move Emacs to 'native-inputs'. 
* gnu/packages/emacs.scm (magit): Move EMACS-NO-X from 'inputs' to
  'native-inputs'.
 2015-05-17 14:12:22 +02:00
Ludovic Courtès c466bfd1ac gnu: magit: Use 'modify-phases'. 
* gnu/packages/emacs.scm (magit)[arguments]: Use 'modify-phases' instead
  of 'alist-cons-before' & co.
 2015-05-17 14:12:22 +02:00
Ludovic Courtès 2f910ef68c gnu: Add git-modes. 
* gnu/packages/emacs.scm (git-modes): New variable.
 2015-05-17 14:12:15 +02:00