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Author SHA1 Message Date
Mark H Weaver 385ae063c9 gnu: unzip: Fix CVE-2014-9636 and some other bugs. 
* gnu/packages/patches/unzip-CVE-2014-9636.patch,
  gnu/packages/patches/unzip-allow-greater-hostver-values.patch,
  gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch,
  gnu/packages/patches/unzip-initialize-symlink-flag.patch,
  gnu/packages/patches/unzip-remove-build-date.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/zip.scm (unzip)[source]: Add patches.
  [arguments]: Use 'modify-phases'.  Remove custom 'configure' phase; pass
  additional make-flags instead.  Add custom 'build' phase that builds
  "generic_gcc" target; remove "generic_gcc" from make-flags.
 2015-07-15 23:02:27 -04:00
Efraim Flashner 68e88a09b4 gnu: Update livestreamer to 1.12.2. 
* gnu/packages/video (livestreamer): Update to 1.12.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-07-15 23:57:01 +02:00
Ludovic Courtès 64720891ae system: Make /dev/kvm 660. 
* gnu/services/base.scm (kvm-udev-rule): Change /dev/kvm mode to 0660 as a
  followup to the resolution of <http://bugs.gnu.org/18994>.
 2015-07-15 23:57:01 +02:00
Mark H Weaver 368474150b Merge branch 'master' into core-updates 2015-07-15 16:11:13 -04:00
Mark H Weaver b76c415253 gnu: icecat: Update to 31.8.0-gnu1. 
* gnu/packages/patches/icecat-enable-acceleration-and-webgl.patch: New file.
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them, and add the new file.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.8.0-gnu1.  Remove the
  outdated patches and add the new one.
 2015-07-15 15:43:23 -04:00
Mark H Weaver 35995769b5 Merge branch 'master' into core-updates 2015-07-15 15:10:32 -04:00
Mark H Weaver c6f909809a gnu: freetype: Update to 2.6. 
* gnu/packages/fontutils.scm (freetype): Update to 2.6.
 2015-07-15 15:08:47 -04:00
Mark H Weaver 25338e9f2f gnu: libgnome: Move popt to propagated-inputs. 
* gnu/packages/gnome.scm (libgnome)[inputs]: Move popt to ...
  [propagated-inputs]: ... here.
 2015-07-15 15:03:56 -04:00
Mark H Weaver 84811c22ff gnu: qt: On armhf, enable use of NEON. 
* gnu/packages/qt.scm (qt-4)[arguments]: Remove "-no-neon" from arguments
  passed to configure.
 2015-07-15 13:37:01 -04:00
Mark H Weaver 3a286b9594 gnu: mplayer: Enable use of NEON on armhf. 
* gnu/packages/video.scm (mplayer)[arguments]: Remove "--disable-neon" from
  arguments passed to configure.
 2015-07-15 13:36:58 -04:00
Mark H Weaver 46472ecd00 gnu: python: Set source file times to 1980 to fix test. 
* gnu/packages/python.scm (python-2)[arguments]: Use 'modify-phases'.  Return
  true from phases where needed.  Add 'set-source-file-times-to-1980' phase.
  Add (ice-9 ftw) to #:modules.
 2015-07-15 13:31:51 -04:00
Ricardo Wurmus e03f6d5e95 gnu: libpcap: Enable plain "linux" backend. 
* gnu/packages/admin.scm (libpcap)[arguments]: Add "--with-pcap=linux"
  configure flag.
 2015-07-15 18:28:36 +02:00
Ricardo Wurmus b42d45088d gnu: setbfree: Disable unsupported optimizations on non-x86. 
* gnu/packages/music.scm (setbfree)[arguments]: Override default OPTIMIZATIONS
  variable on non-x86 systems.
 2015-07-15 17:19:58 +02:00
Eric Bavier fc3cbc67c1 gnu: eigen: Use parallel-job-count. 
* gnu/packages/algebra.scm (eigen)[arguments]: 'current-processor-count' ->
  'parallel-job-count'.
 2015-07-14 20:49:43 -05:00
Mark H Weaver c09e6a5f5e gnu: Build tarballs deterministically. 
* gnu/packages/make-bootstrap.scm (tarball-package)[arguments]: Build tarball
  deterministically.
* gnu/packages/admin.scm (isc-dhcp)[arguments]: In 'post-configure' phase,
  create bind.tar.gz deterministically.
* gnu/packages/video.scm (avidemux)[arguments]: In 'repack-ffmpeg' phase,
  create ffmpeg-1.2.1.tar.bz2 deterministically.
 2015-07-14 19:44:38 -04:00
Eric Bavier 107db20da8 gnu: ccache: Update to 3.2.2. 
* gnu/packages/ccache.scm (ccache): Update to 3.2.2.
  [arguments]: Rename 'patch-test-shebangs phase to 'setup-tests.  Set the
  SHELL environment variable.
 2015-07-14 18:14:43 -05:00
Alex Kost b0ded08ff7 gnu: Add dunst. 
* gnu/packages/dunst.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-07-14 18:46:18 +03:00
Alex Kost 60a5617b9d gnu: Add libxdg-basedir. 
* gnu/packages/freedesktop.scm (libxdg-basedir): New variable.
 2015-07-14 18:46:17 +03:00
Ludovic Courtès c6d33a9d9c gnu: Adjust packages to new handling of propagated inputs. 
This is a followup to 161094c, which gets rid of the "a/b" notation for
propagated inputs.

* gnu/packages/cross-base.scm (cross-gcc-arguments): Change reference from
  "libc/linux-headers" to "linux-headers".
* gnu/packages/emacs.scm (magit-svn): Change "magit/git-modes" to
  "git-modes".
 2015-07-14 16:15:30 +02:00
Ludovic Courtès 661a1d7924 file-systems: Allow users to specify file system UUIDs as strings. 
Fixes <http://bugs.gnu.org/19778>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/system/file-systems.scm (%uuid-rx): New variable.
  (string->uuid): New procedure.
  (uuid): New macro.
* tests/file-systems.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* doc/guix.texi (File Systems): Give an example of UUID.
 2015-07-14 15:24:20 +02:00
Ludovic Courtès 0ec5ee9486 file-systems: Implement partition lookup by UUID. 
* gnu/build/file-systems.scm (read-ext2-superblock*, partition-predicate): New
  procedures.
  (partition-label-predicate): Rewrite in terms of 'partition-predicate'.
  (partition-uuid-predicate, find-partition-by-uuid, uuid->string): New
  procedures.
  (%network-byte-order): New macro.
  (canonicalize-device-spec)[canonical-title]: Check whether SPEC is a string.
  [resolve]: New procedure.
  Add 'uuid' case and use it.
 2015-07-14 15:24:19 +02:00
Ludovic Courtès f868637527 gnu: nss: Upgrade to 3.19.2. 
* gnu/packages/gnuzilla.scm (nss): Upgrade to 3.19.2.
 2015-07-14 15:24:19 +02:00
Ludovic Courtès 2de3cd8972 file-systems: Use (guix build syscalls) at build time if needed. 
* gnu/build/file-systems.scm: Wrap 'module-use!' statement in 'eval-when'.
 2015-07-14 15:24:18 +02:00
Ludovic Courtès 7e5124976b gnu: util-linux: Fix file name of 'umount' in 'eject'. 
Fixes <http://bugs.gnu.org/21010>.
Reported by Alex Sassmannshausen <alex.sassmannshausen@gmail.com>.

* gnu/packages/linux.scm (util-linux)[arguments]: Add 'set-umount-file-name'.
 2015-07-14 14:00:46 +02:00
Ludovic Courtès 1b9cf4ad2f gnu: util-linux: Use 'modify-phases'. 
* gnu/packages/linux.scm (util-linux)[arguments]: Use 'modify-phases' instead
  of 'alist-cons-before'.
 2015-07-14 12:40:35 +02:00
Jeff Mickey 0577ddc45d gnu: Add rc. 
* gnu/packages/rc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-07-13 19:33:17 -04:00
Mark H Weaver 7a34576206 gnu: corkscrew: Pass triplet instead of system as --build and --host. 
This is a followup to commit 3c7d023d64,
"build-system/gnu: Pass --build=<triplet> to configure by default"

* gnu/packages/ssh.scm (corkscrew)[arguments]: In custom configure phase,
  accept 'build' keyword argument and pass it to configure in --build argument
  and, if not cross-compiling, the --host argument.  Previously, the nix
  system string was passed.
 2015-07-13 19:05:17 -04:00
Mark H Weaver 412a242258 gnu: liba52: Remove --build from configure flags. 
This is a followup to commit 3c7d023d64,
"build-system/gnu: Pass --build=<triplet> to configure by default"

* gnu/packages/video.scm (liba52)[arguments]: Remove --build from configure
  flags.
 2015-07-13 19:04:27 -04:00
Mark H Weaver 92e79092eb gnu: sysfsutils-1: Remove --build from configure flags. 
This is a followup to commit 3c7d023d64,
"build-system/gnu: Pass --build=<triplet> to configure by default"

* gnu/packages/linux.scm (sysfsutils-1)[arguments]: Remove field.
 2015-07-13 19:03:02 -04:00
Mark H Weaver 28b26cab94 gnu: xbindkeys: Remove --build from configure flags. 
This is a followup to commit 3c7d023d64,
"build-system/gnu: Pass --build=<triplet> to configure by default"

* gnu/packages/xdisorg.scm (xbindkeys)[arguments]: Remove field.
 2015-07-13 19:02:09 -04:00
Mark H Weaver b2314ca228 gnu: gmp: Remove --build from configure-flags. 
This is a followup to commit 3c7d023d64,
"build-system/gnu: Pass --build=<triplet> to configure by default"

* gnu/packages/multiprecision.scm (gmp)[arguments]: Remove field.
 2015-07-13 18:59:32 -04:00
Mark H Weaver 28dbc04750 gnu: linux-libre: Update to 4.1.2. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.2.
 2015-07-13 15:06:03 -04:00
Andreas Enge 8d662672fc gnu: boost: Patch to avoid -m32 flag on mips. 
* gnu/packages/patches/boost-mips-avoid-m32.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/boost.scm (boost): Use it.
 2015-07-13 14:53:38 -04:00
Andreas Enge 31e0ed9592 gnu: boost: Update to 1.58.0. 
* gnu/packages/boost.scm (boost): Update to 1.58.0.
 2015-07-13 14:53:38 -04:00
Mathieu Lirzin b57ec5f6cd gnu: file-systems: Fix typo. 
* gnu/system/file-systems.scm (%container-file-systems): Fix typo in a
  comment.
 2015-07-13 16:22:16 +02:00
David Hashe f0afb0c86f gnu: Add rhythmbox. 
* gnu/packages/gnome.scm (rhythmbox): New variable.
 2015-07-12 23:29:08 -04:00
Ludovic Courtès 98b385d15b gnu: Add 'libstdc++-doc'. 
* gnu/packages/gcc.scm (make-libstdc++-doc): New procedure.
  (libstdc++-doc-4.9, libstdc++-doc-5.1): New variables.
 2015-07-12 23:10:43 +02:00
Claes Wallin e662d64481 gnu: Add execline. 
* gnu/package/skarnet.scm (execline): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-07-12 22:02:41 +02:00
Claes Wallin 4e2bd414f8 gnu: Add skalibs. 
* gnu/package/skarnet.scm (skalibs): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-07-12 22:00:40 +02:00
Claes Wallin fd83aa000c gnu: pumpa: Update to 0.9.1. 
* gnu/packages/pumpio.scm (pumpa): Update to 0.9.1.  Change URL.

Signed-off-by: Mathieu Lirzin <mthl@openmailbox.org>
 2015-07-12 11:09:05 +02:00
Ludovic Courtès f727ec5bc8 gnu: perl: Do not retain references to Binutils and other build-time tools. 
* gnu/packages/perl.scm (perl)[arguments]: Pass -Dlibpth and -Dplibpth to
  ./Configure.
 2015-07-12 01:27:00 +02:00
Mark H Weaver aa7251176f gnu: Require NEON on armhf. 
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): On armhf,
  include --with-fpu=neon.
* doc/guix.texi (GNU Distribution): Document that our armhf port
  requires NEON.
 2015-07-11 19:06:20 -04:00
Mark H Weaver c7bdc6bb7d gnu: polkit: Update to 0.113. 
* gnu/packages/polkit.scm (polkit): Update to 0.113.
 2015-07-11 19:03:19 -04:00
Mark H Weaver 087a4e9c43 gnu: openssh: Update to 6.9p1. 
* gnu/packages/ssh.scm (openssh): Update to 6.9p1.
  [source]: Use http mirrors.  Add mirror from Erlangen.
 2015-07-11 18:40:33 -04:00
Mark H Weaver f8facc18ed install: Fix variable reference to iproute2 package. 
This is a followup to commit d43002f645.

* gnu/system/install.scm (installation-os)[packages]: Refer to IPROUTE instead
  of IPROUTE2.
 2015-07-11 16:44:23 -04:00
Mark H Weaver e52ecc74c9 gnu: openssl: Update to 1.0.2d. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2d.
 2015-07-11 15:50:13 -04:00
Mark H Weaver 16f7190830 gnu: pcre: Enable more features. 
* gnu/packages/pcre.scm (pcre)[arguments]: To configure-flags, add
  "--enable-unicode-properties", "--enable-pcre16", and "--enable-pcre32".
 2015-07-11 13:00:13 -04:00
Mark H Weaver a60cd281d1 gnu: ntp: Update to 4.2.8p3; use system libevent. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p3.
  [source]: Add snippet to remove bundled copy of libevent.
  [inputs]: Add libevent.
  [arguments]: Add 'disable-network-test' phase.
 2015-07-11 11:39:34 -04:00
Ludovic Courtès d43002f645 install: Add iproute2 to the installation image. 
Fixes <http://bugs.gnu.org/21019>.
Reported by <info@danieleparisi.me>.

* gnu/system/install.scm (installation-os)[packages]: Add IPROUTE2.
 2015-07-11 12:25:39 +02:00
Mark H Weaver 6870216758 gnu: gnome-terminal: Move dconf to propagated-inputs. 
* gnu/packages/gnome.scm (gnome-terminal): Move dconf from inputs to
  propagated-inputs.
 2015-07-11 02:48:50 -04:00
Mark H Weaver db35fb88e4 gnu: bash: Update to 4.3.39. 
* gnu/packages/bash.scm (%patch-series-4.3): Add patches 34-39.
 2015-07-11 01:04:18 -04:00
Mark H Weaver 47ed8e048b gnu: texinfo: Add procps to native-inputs to fix tests. 
* gnu/packages/texinfo.scm (texinfo)[native-inputs]: Add procps.
  (texinfo-5, texinfo-4)[native-inputs]: Override to be empty.
* gnu/packages/commencement.scm (texinfo-boot0)[texinfo]: Override
  native-inputs to be empty.
 2015-07-11 00:59:31 -04:00
Mark H Weaver 8ba24e62af gnu: nss: Update to 3.19.2. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.19.2.
 2015-07-10 23:47:08 -04:00
Paul van der Walt c273728a12 gnu: libgpg-error: Update to 1.19. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.19.
 2015-07-10 23:47:08 -04:00
Mark H Weaver f9aec676ac gnu: libidn: Update to 1.31. 
* gnu/packages/libidn.scm (libidn): Update to 1.31.
 2015-07-10 23:47:08 -04:00
Mark H Weaver f7b55b0416 gnu: texinfo: Use version 6.0 by default. 
* gnu/packages/texinfo.scm (texinfo): Update to 6.0.
  (texinfo-6): Removed.
  (texinfo-5): New variable.
 2015-07-10 23:47:08 -04:00
Mark H Weaver 5182657449 gnu: libunistring: Update to 0.9.6. 
* gnu/packages/libunistring.scm (libunistring): Update to 0.9.6.
 2015-07-10 23:47:08 -04:00
Mark H Weaver 87da4f1ed8 gnu: mpfr: Update to 3.1.3. 
* gnu/packages/multiprecision.scm (mpfr): Update to 3.1.3.
 2015-07-10 23:47:08 -04:00
Mark H Weaver 302af59fc1 gnu: ed: Update to 1.12. 
* gnu/packages/ed.scm (ed): Update to 1.12.
 2015-07-10 23:47:08 -04:00
Mark H Weaver 79e09ef2fd gnu: gettext: Update to 0.19.5. 
* gnu/packages/patches/gettext-msgunfmt.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gettext.scm (gnu-gettext): Update to 0.19.5.  Remove patch.
 2015-07-10 23:47:07 -04:00
Mark H Weaver c2ba49ef8e gnu: coreutils: Update to 8.24. 
* gnu/packages/patches/coreutils-dummy-man.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/base.scm (coreutils): Update to 8.24.  Remove patch.
 2015-07-10 23:47:07 -04:00
Mark H Weaver 6f317fa365 gnu: gcc-4.9: Update to 4.9.3. 
* gnu/packages/gcc.scm (gcc-4.9): Update to 4.9.3.  Remove
  "gcc-arm-link-spec-fix.patch" from patches.
 2015-07-10 23:47:07 -04:00
Mark H Weaver 5d6792f06f gnu: bootstrap: Create a wrapper for guile to set the system load path. 
* gnu/packages/bootstrap.scm (raw-build): After unpacking, use the bootstrap
  guile to create its own wrapper that sets the guile system load path.
 2015-07-10 23:47:07 -04:00
Mark H Weaver 1f4335ae78 gnu: openssl: Update to 1.0.2d. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2d.
 2015-07-10 12:36:52 -04:00
Mark H Weaver 6c413c92f2 Revert "gnu: boost: Update to 1.58.0." 
This reverts commit 16de69c950.
 2015-07-10 12:35:50 -04:00
David Thompson 1e49bcf981 gnu: Include (guix build syscalls) module in initrd/VM derivations. 
This bug was introduced in commit 85c3127.

Thanks to Christopher Webber for reporting it.

* gnu/syste/linux-initrd.scm (base-initrd): Include (guix build syscalls)
  module in derivation.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
 2015-07-10 09:47:07 -04:00
David Hashe e8627cd995 gnu: brasero: Update to 3.12.1, Add inputs. 
* gnu/packages/gnome.scm (brasero): Update to 3.12.1.
  [inputs]: Add gobject-introspection, nettle, and totem-pl-parser.
 2015-07-10 01:00:18 -04:00
Mark H Weaver b93c1d9dba gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to dd91141.
  [arguments]: Use 'modify-phases'.  Add 'disable-container-tests' phase.
 2015-07-09 17:43:34 -04:00
Mark H Weaver dd9114107d Revert "gnu: guix: Update snapshot." 
This reverts commit bfabd1fbb8.
 2015-07-09 15:15:06 -04:00
Mark H Weaver bfabd1fbb8 gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 9f04196.
 2015-07-09 13:07:11 -04:00
Mark H Weaver a8f7da211d Revert "gnu: libgpg-error: Update to 1.19." 
This reverts commit 552b98a208.
 2015-07-09 12:51:17 -04:00
Paul van der Walt 552b98a208 gnu: libgpg-error: Update to 1.19. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.19.
 2015-07-09 18:43:10 +02:00
Paul van der Walt 18ed97d6e2 gnu: pinentry: Update to 1.9.5; add input libassuan. 
* gnu/packages/gnupg.scm (pinentry): Update to 1.9.5. Add input libassuan.
 2015-07-09 18:43:10 +02:00
Paul van der Walt 19bda3f145 gnu: libksba: Update to 1.3.3. 
* gnu/packages/gnupg.scm (libksba): Update to 1.3.3.
 2015-07-09 18:43:10 +02:00
Paul van der Walt a0e984c33f gnu: gpgme: Update to 1.5.5. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.5.5.
 2015-07-09 18:43:10 +02:00
Paul van der Walt b96485b939 gnu: npth: Update to 1.2. 
* gnu/packages/gnupg.scm (npth): Update to 1.2.
 2015-07-09 18:43:09 +02:00
Paul van der Walt 15e771b001 gnu: pius: Update to 2.1.1. 
* gnu/packages/gnupg.scm (pius): Update to 2.1.1.
 2015-07-09 18:43:09 +02:00
Paul van der Walt 5dabdb75cb gnu: libassuan: Update to 2.2.1. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.2.1.
 2015-07-09 18:43:09 +02:00
Paul van der Walt 3efee6a4eb gnu: ncmpc: Update to 0.24. 
* gnu/packages/mpd.scm (ncmpc): Update to 0.24.
 2015-07-09 18:42:00 +02:00
Paul van der Walt 555f935b06 gnu: ncmpcpp: Update to 0.6.5. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.6.5.
 2015-07-09 18:42:00 +02:00
Paul van der Walt 37b57da2a4 gnu: mpd-mpc: Update to 0.27. 
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.27.
 2015-07-09 18:42:00 +02:00
Paul van der Walt bdae103367 gnu: mpd: Update to 0.19.10. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.10.
 2015-07-09 18:42:00 +02:00
Paul van der Walt a53a925f24 gnu: libmpdclient: Update to 2.10. 
* gnu/packages/mpd.scm (libmpdclient): Update to 2.10.
 2015-07-09 18:42:00 +02:00
Mark H Weaver 4e3fc54770 gnu: Add totem. 
* gnu/packages/gnome.scm (totem): New variable.
 2015-07-09 12:22:51 -04:00
David Thompson c829bc80bd gnu: system: Add Linux container file systems. 
* gnu/system/file-systems.scm (%container-file-systems): New variable.
 2015-07-09 08:25:33 -04:00
David Thompson c1f6a0c2ed gnu: build: Add Linux container module. 
* gnu/build/linux-container.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* .dir-locals.el: Add Scheme indent rules for 'call-with-container', and
  'container-excursion'.
* tests/containers.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
 2015-07-09 08:23:03 -04:00
David Thompson 85c3127fa9 build: file-systems: Import (guix build syscalls) for non-static Guiles. 
* gnu/build/file-systems.scm: Import (guix build syscalls) when 'mount' is not
  defined.
* gnu/system.scm (operating-system-activation-script): Include (guix build
  syscalls) module in derivation.
 2015-07-09 08:23:03 -04:00
Ricardo Wurmus 9f04196d88 gnu: preseq: Move "use-samtools-headers" phase. 
* gnu/packages/bioinformatics.scm (preseq)[arguments]: Move phase
  "use-samtools-headers" after "enter-dir" phase.
 2015-07-09 12:12:07 +02:00
Mark H Weaver 92f1b4a54c gnu: Add gst-plugins-ugly. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): New variable.
 2015-07-09 03:30:27 -04:00
Mark H Weaver 549381d6db gnu: ffmpeg: Add libx264 support. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libx264.
  [arguments]: Add "--enable-libx264" to configure-flags.
 2015-07-09 03:30:27 -04:00
Mark H Weaver 82712597cc gnu: Add libx264. 
* gnu/packages/video.scm (libx264): New variable.
 2015-07-09 03:30:27 -04:00
Andreas Enge 9fc852183f gnu: libreoffice: Update to 5.0.0.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.0.0.2.
 2015-07-09 09:22:23 +02:00
Andreas Enge 7680843e0f gnu: libwps: Update to 0.4.0. 
* gnu/packages/libreoffice.scm (libwps): Update to 0.4.0.
 2015-07-09 09:21:50 +02:00
Andreas Enge fc04ee3ba7 gnu: libmwaw: Update to 0.3.5. 
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.5.
 2015-07-09 09:21:50 +02:00
Andreas Enge c80259b313 gnu: libetonyek: Update to 0.1.3. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.3.
  [native-inputs]: Add glm and mdds.
 2015-07-09 09:21:50 +02:00
Andreas Enge 694bbb4da6 gnu: mdds: Update to 0.12.1. 
* gnu/packages/boost.scm (mdds): Update to 0.12.1.
 2015-07-09 09:21:50 +02:00
Mark H Weaver 7b21252632 gnu: Add grilo-plugins. 
* gnu/packages/gnome.scm (grilo-plugins): New variable.
 2015-07-09 02:18:55 -04:00
Mark H Weaver 8d4791bfe8 gnu: Add grilo. 
* gnu/packages/gnome.scm (grilo): New variable.
 2015-07-09 02:18:55 -04:00
Mark H Weaver 9fb00f383d gnu: wpa-supplicant: Fix WPS and P2P NFC NDEF record payload length validation. 
* gnu/packages/patches/wpa-supplicant-2015-5-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patch.
 2015-07-08 18:27:37 -04:00
Andreas Enge 16de69c950 gnu: boost: Update to 1.58.0. 
* gnu/packages/boost.scm (boost): Update to 1.58.0.
 2015-07-08 23:18:40 +02:00
Ricardo Wurmus 56e373ef75 gnu: Add preseq. 
* gnu/packages/bioinformatics.scm (preseq): New variable.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: New file.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-07-08 17:05:00 +02:00
Ricardo Wurmus 5bdda30b32 gnu: samtools: Install headers. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
  "install-headers" to install header files.
 2015-07-08 17:05:00 +02:00
Federico Beffa 85ef742c25 gnu: Add emacs-mmm-mode. 
* gnu/packages/emacs.scm (emacs-mmm-mode): New variable.
 2015-07-08 10:53:05 +02:00
Federico Beffa 7839533458 gnu: Add emacs-auctex. 
* gnu/packages/emacs.scm: New variable.
 2015-07-08 10:53:05 +02:00
David Thompson 575b4b092d gnu: system: Move file-system->spec to (gnu system file-systems). 
* gnu/system/linux-initrd.scm (file-system->spec): Move this...
* gnu/system/file-systems.scm: ... to here.
 2015-07-07 21:20:59 -04:00
David Thompson 9110c2e942 gnu: system: Move <file-system-mapping> into (gnu system file-systems). 
* gnu/system/vm.scm (<file-system-mapping>, %store-mapping): Move from here...
* gnu/system/file-systems.scm: ...to here.
* guix/scripts/system.scm: Import (gnu system file-systems).
 2015-07-07 21:20:59 -04:00
Cyril Roelandt 0e88cbf8c1 gnu: python-testtools: make python-mimeparse a propagated input 
* gnu/packages/python.scm (python-testtools): move python-mimeparse from inputs
  to propagated-inputs.
 2015-07-08 02:28:51 +02:00
Mark H Weaver d7facc6603 gnu: cups-filters: Update to 1.0.71. 
* gnu/packages/cups.scm (cups-filters): Update to 1.0.71.
 2015-07-07 16:47:48 -04:00
Mark H Weaver b1982b80ca gnu: zathura-{cb,ps,djvu,pdf-poppler}: Fix installation of desktop files. 
Based on a patch by Alex Kost <alezost@gmail.com>.

* gnu/packages/pdf.scm (zathura-cb, zathura-ps, zathura-djvu)
  (zathura-pdf-poppler)[arguments]: In make-flags, set PREFIX instead of
  DESTDIR and adjust PLUGINDIR accordingly.
 2015-07-07 15:58:35 -04:00
Mark H Weaver 734976b681 gnu: libdvdnav: Update to 5.0.3. 
* gnu/packages/video.scm (libdvdnav): Update to 5.0.3.
 2015-07-07 14:48:09 -04:00
Mark H Weaver 9aebf3301a gnu: libdvdread: Update to 5.0.3. 
* gnu/packages/video.scm (libdvdread): Update to 5.0.3.
 2015-07-07 14:48:09 -04:00
Alex Kost c05c43216f system: Fix typo. 
* gnu/system.scm (etc-directory): Fix typo in a comment.
 2015-07-07 21:28:53 +03:00
Mark H Weaver e088410984 gnu: Add libmpeg2. 
* gnu/packages/video.scm (libmpeg2): New variable.
 2015-07-07 13:09:36 -04:00
Mark H Weaver 23da88f61e gnu: liba52: Build shared library. 
* gnu/packages/patches/liba52-enable-pic.patch,
  gnu/packages/patches/liba52-link-with-libm.patch,
  gnu/packages/patches/liba52-set-soname.patch,
  gnu/packages/patches/liba52-use-mtune-not-mcpu.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/video.scm (liba52)[source]: Add patches.
  [native-inputs]: Add autoconf, automake, and libtool.
  [arguments]: Add "--enable-shared" to configure-flags.
  Add 'bootstrap' phase.
 2015-07-07 10:52:04 -04:00
David Thompson 4ca5c91f65 gnu: ruby: Remove custom 'rake gem' build phase from all gems. 
* gnu/packages/ruby.scm (ruby-hoe, ruby-rake-compiler,
  ruby-net-http-persistent, ruby-minitest, ruby-minitest-sprint,
  ruby-minitest-bacon): Remove custom 'rake gem' build phase that is now
  handled automatically by the Ruby build system.
 2015-07-07 08:54:29 -04:00
Ricardo Wurmus 795c01f31d gnu: samtools: Update to 1.2. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.2.
 2015-07-07 14:43:07 +02:00
Andreas Enge 66b2b085ce gnu: pari-gp: Update to 2.7.4. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.4.
 2015-07-07 13:19:09 +02:00
Mark H Weaver 48cfe294b0 gnu: icecat: Apply more libvpx-1.4 fixes. 
This is a followup to commit c803ffcb3a.

* gnu/packages/patches/icecat-libvpx-1.4.patch: Augment existing patch to
  include fixes for content/media/encoder/VP8TrackEncoder.cpp.
 2015-07-07 02:59:59 -04:00
Mark H Weaver c803ffcb3a gnu: icecat: Fix build against libvpx 1.4. 
* gnu/packages/patches/icecat-libvpx-1.4.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2015-07-06 23:01:56 -04:00
Mark H Weaver 0ba652b2f5 gnu: gst-plugins-good: Disable rtprtx tests that frequently fail. 
* gnu/packages/gstreamer.scm (arguments): Add 'disable-failing-rtprtx-tests'
  phase.
 2015-07-06 21:36:33 -04:00
Mark H Weaver 723e886656 gnu: libvpx: Update to 1.4.0. 
* gnu/packages/patches/libvpx-fix-armhf-link.patch,
  gnu/packages/patches/libvpx-fix-ssse3-quantize.patch,
  gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/video.scm (libvpx): Update to 1.4.0.  Remove patches.  Update
  source URI.
 2015-07-06 21:17:05 -04:00
Mark H Weaver 9ed5486439 gnu: libwmf: Fix CVE-2006-3376, CVE-2009-1364, CVE-2015-{0848,4588,4695,4696}. 
* gnu/packages/patches/libwmf-CVE-2006-3376.patch,
  gnu/packages/patches/libwmf-CVE-2009-1364.patch,
  gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libwmf)[source]: Add patches.
 2015-07-06 20:04:50 -04:00
Andreas Enge f2820e0763 gnu: libreoffice: Update to 4.4.4.3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 4.4.4.3.
 2015-07-06 08:26:42 +02:00
Ludovic Courtès 1109ddcd54 gnu: freeipmi: Update to 1.4.9. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.4.9.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès 6cb2533b1e gnu: gcal: Update to 4. 
* gnu/packages/gcal.scm (gcal): Update to 4.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès 0bd6f138d9 gnu: gxmessage: Update to 3.4.3. 
* gnu/packages/gxmessage.scm (gxmessage): Update to 3.4.3.
  [inputs]: Use GTK+ instead of GTK+-2.
 2015-07-06 00:47:09 +02:00
Ludovic Courtès af87a551bc gnu: guile-sdl: Update to 0.5.2. 
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.2.
  [arguments]: Augment 'fix-env-and-path' phase to modify 'test/Makefile.in'.
 2015-07-06 00:47:09 +02:00
Ricardo Wurmus d19cf78357 gnu: powertabeditor: Update to 2.0.0-alpha8. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha8.
 2015-07-05 20:57:04 +02:00
Ricardo Wurmus 7e11d11355 gnu: powertabeditor: Enable tests. 
* gnu/packages/music.scm (powertabeditor)[arguments]: Run "pte_tests" in
  "check" phase; add phase "fix-tests".
 2015-07-05 20:57:04 +02:00
Andreas Enge cb6a802c01 gnu: Add LibreSSL. 
* gnu/packages/tls.scm (libressl): New variable.
 2015-07-05 19:03:34 +02:00
Andreas Enge e9aa8d0ccb gnu: Fix ambiguity between openssl package and license in tls module. 
* gnu/packages/tls.scm: Prefix imported licenses.
 2015-07-05 19:03:34 +02:00
Mark H Weaver 90e1cdae0c gnu: icecat: Add support for WebGL, CUPS, Hunspell, startup-notification, etc. 
Also remove most bundled libraries from the source, add comments about
libraries yet to be unbundled, explicitly link libxul.so with libraries that
might try (and fail) to dlopen, and remove the h264parse gstreamer module from
the blacklist.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add snippet.
  [inputs]: Add cups, gdk-pixbuf, glib, hunspell, libcanberra, libgnome,
  libxinerama, libxscrnsaver, mit-krb5, and startup-notification.
  [arguments]<#:configure-flags>: add "--enable-default-toolkit=cairo-gtk2",
  "--enable-pango", "--enable-gio", "--enable-svg", "--enable-canvas",
  "--enable-mathml", "--enable-startup-notification", "--disable-gnomevfs",
  "--disable-gconf", "--disable-gnomeui", and "--enable-system-hunspell".
  Remove outdated comment about "--with-system-bz2" not being used.
  <#:phases>: Use 'modify-phases'.  Add 'remove-h264parse-from-blacklist'
  and 'arrange-to-link-libxul-with-libraries-it-might-dlopen' phases.
 2015-07-05 12:58:56 -04:00
Andreas Enge cc2b77dfc7 gnu: Move content of openssl module into tls module. 
* gnu/packages/openssl.scm (openssl, perl-net-ssleay): Move to...
* gnu/packages/tls.scm: ...here.
* gnu/packages/openssl.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister deleted file.
* gnu/packages/{admin.scm, bittorrent.scm, certs.scm, ci.scm,
  cyrus-sasl.scm, databases.scm, dns.scm, ebook.scm, enlightenment.scm,
  gnunet.scm, libreoffice.scm, links.scm, mail.scm, messaging.scm,
  networking.scm, ntp.scm, openldap.scm, package-management.scm, pdf.scm,
  python.scm, qt.scm, rdesktop.scm, rdf.scm, ruby.scm, ssh.scm,
  synergy.scm, tor.scm, version-control.scm, video.scm, vpn.scm,
  w3m.scm, web.scm, weechat.scm, xiph.scm}: Adapt module import.
 2015-07-05 18:27:24 +02:00
Andreas Enge a7fd7b68a6 gnu: Rename module gnutls to tls. 
* gnu/packages/gnutls.scm: Rename to...
* gnu/packages/tls.scm: ... this.  Change module name accordingly.
* gnu/packages/{admin.scm, cups.scm, curl.scm, dc.scm, dns.scm, emacs.scm,
  ftp.scm, gnome.scm, gnunet.scm, gnupg.scm, gsasl.scm, lynx.scm,
  mail.scm, messaging.scm, package-management.scm, shishi.scm,
  task-management.scm, version-control.scm, video.scm, vpn.scm,
  webkit.scm, weechat.scm, wget.scm, wine.scm, xml.scm}: Adapt module
  import to new name.
* gnu-system.am (GNU_SYSTEM_MODULES): Rename gnutls module to tls.
 2015-07-05 17:09:42 +02:00
Andreas Enge a351c7c157 gnu: avidemux: Drop version 2.5. 
* gnu/packages/video.scm (avidemux-2.5): Delete variable.
 2015-07-05 12:23:12 +02:00
Ben Woodcroft af86047537 gnu: Add prodigal. 
* gnu/packages/bioinformatics.scm (prodigal): New variable.
 2015-07-05 02:56:53 -04:00
Ricardo Wurmus 151714ca8c gnu: shogun: Build with install RPATH. 
* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
  build with install RPATH.
 2015-07-04 17:55:30 +02:00
Ludovic Courtès e4fef9df27 gnu: englightenment: Use https URLs. 
* gnu/packages/enlightenment.scm (efl, elementary, emotion-generic-players,
  terminology, enlightenment): Use https instead of http since the latter
  redirects to the former.
 2015-07-04 17:08:53 +02:00
Efraim Flashner c4f8a7aacc gnu: enlightenment: Update to 0.19.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5.
 2015-07-04 16:50:18 +02:00
Efraim Flashner 88988b41a2 gnu: emotion-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:42 +02:00
Efraim Flashner 7b09969b2e gnu: evas-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:07 +02:00
Efraim Flashner 0179686d13 gnu: elementary: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2.
 2015-07-04 16:48:26 +02:00
Efraim Flashner 7e22d6fee9 gnu: efl: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.14.2.
 2015-07-04 16:47:42 +02:00
pjotrp 022170dca1 gnu: Add ruby-rake-compiler. 
* gnu/packages/ruby.scm (ruby-rake-compiler): New variable.
 2015-07-04 09:47:33 -04:00
Ricardo Wurmus 80e907fe57 gnu: eigen: Update to 3.2.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.5.
 2015-07-04 13:32:52 +02:00
Mark H Weaver 4463c0d216 gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}. 
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-07-04 05:44:10 -04:00
Andreas Enge 257b6c4375 gnu: unrtf: Fix download location. 
* gnu/packages/unrtf.scm (unrtf): Fix download location.
 2015-07-03 22:54:51 +02:00
Ricardo Wurmus b05d1c68bc gnu: r: Replace "atlas" with "openblas". 
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
 2015-07-03 18:45:14 +02:00
Ludovic Courtès 606c638016 gnu: gnutls: Move man3 pages to "doc" output. 
* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 4b0f2ef743 gnu: qt-4: Remove reference from "out" to "doc". 
* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag.
  Add 'move-doc' phase.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ff1989a599 gnu: qt-4: Use a more standard directory layout. 
* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir,
  -plugindir, and -translationdir.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès cba632c4a8 gnu: qt-4: Use 'modify-phases'. 
* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ef2f51a445 gnu: cups-filter: Install backends and filters under lib/cups. 
This ensures that they are stripped during the 'strip' phase, thereby removing
references to GCC and linux-libre-headers that would otherwise be found in
debugging symbols.

* gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and
  pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}.
  (cups)[arguments]: Adjust accordingly.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 6a52df505a gnu: mysql: Remove unnecessary binaries. 
This saves ~42 MiB on x86_64.

* gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 3f289db69d gnu: mysql: Strip references and GCC and other build-time dependencies. 
* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès b5b08878b6 gnu: mutt: Don't retain reference to GCC. 
* gnu/packages/patches/mutt-store-references.patch: New file.
* gnu/packages/mail.scm (mutt)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 9161ba818d gnu: ghostscript: Add "doc" output. 
* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field.
  [outputs]: New field.
  [arguments]: Add 'remove-doc-reference' phase.
 2015-07-03 15:28:06 +02:00
Mark H Weaver 08fa45b190 gnu: gnupg: Enable TLS support. 
* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config.
  [inputs]: Add gnutls.
  (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '().
 2015-07-02 12:35:12 -04:00
Mark H Weaver 5e5fa28e76 gnu: gnupg: Update to 2.1.6. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6.
 2015-07-02 12:35:12 -04:00
Ricardo Wurmus c61fe02cc0 gnu: Add WarpedLMM. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable.
 2015-07-02 11:16:46 +02:00
Ricardo Wurmus f4f4ced8dc gnu: r: Set default pager. 
* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to
  avoid "false" as a default pager.
 2015-07-02 10:50:55 +02:00
Ludovic Courtès 28de8d258b environment: Define 'GUIX_ENVIRONMENT'. 
* guix/scripts/environment.scm (create-environment): Define 'GUIX_ENVIRONMENT'.
* doc/guix.texi (Invoking guix environment): Document it.
* gnu/system/shadow.scm (default-skeletons): Adjust 'PS1' depending on whether
  'GUIX_ENVIRONMENT' is defined.
 2015-07-01 23:29:49 +02:00
Ricardo Wurmus d6902798d1 gnu: powertabeditor: Replace "gcc" with "libiberty". 
* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with
  "libiberty".
 2015-07-01 21:52:08 +02:00
Ricardo Wurmus d231bb3575 gnu: Add Hydrogen. 
* gnu/packages/music.scm (hydrogen): New variable.
 2015-07-01 21:52:08 +02:00
Mark H Weaver 5135aed92b gnu: linux-libre: Update to 4.1.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.1.
 2015-07-01 00:12:39 -04:00
Eric Bavier 58c1806908 gnu: git: Add inputs for send-email. 
* gnu/packages/version-control.scm (package-transitive-propagated-labels*)
  (package-propagated-input-refs): New procedures.
  (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl.
  [outputs]: Add send-email output.
  [arguments]: Add #:modules argument with srfi-1.  In 'split phase, wrap
  git-send-email.
 2015-06-30 05:01:42 -05:00
Eric Bavier c6ee18abb6 gnu: Add perl-authen-sasl. 
* gnu/packages/web.scm (perl-authen-sasl): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier 9fe938c19f gnu: Add perl-gssapi. 
* gnu/packages/web.scm (perl-gssapi): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier b1096f3dbb gnu: Add perl-net-smtp-ssl. 
* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
 2015-06-30 05:01:42 -05:00
Mark H Weaver d2e3caba5d gnu: curl: Disable test that fails on Hydra. 
* gnu/packages/curl.scm (arguments): Disable test 1510.
 2015-06-30 00:17:00 -04:00
Mark H Weaver 4617c2e383 gnu: curl: Update to 7.43.0. 
* gnu/packages/curl.scm (curl): Update to 7.43.0.
 2015-06-30 00:17:00 -04:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier 38f0a2bade gnu: openmpi: Upgrade to 1.8.5. 
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
  [native-inputs]: Add perl.
  [arguments]: Add configure flags for thread support.
 2015-06-29 15:34:36 -05:00
Eric Bavier 579f5c8a58 gnu: hwloc: Move numactl to inputs. 
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
  [inputs]: ...to here.
  [arguments]: New 'refine-libnuma' phase.
 2015-06-29 15:34:36 -05:00
Eric Bavier ce7d9c989d gnu: hwloc: Upgrade to 1.10.1. 
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
  [source]: Use patch.
  [propagated-inputs]: Remove libpci.
  [inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-06-29 15:34:36 -05:00
Eric Bavier 7362371da5 gnu: python-mccabe: Fix license field. 
* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
  'license:expat'.
 2015-06-29 15:34:35 -05:00
Cyril Roelandt e8df8f476e gnu: Add python-flake8. 
* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt a59e017cb1 gnu: Add python-mccabe. 
* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
 2015-06-30 00:07:56 +02:00
Cyril Roelandt e31d7f4420 gnu: Add python-pyflakes. 
* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
 2015-06-30 00:07:55 +02:00
Cyril Roelandt d889e6c4d9 gnu: Add python-pep8. 
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
 2015-06-30 00:07:55 +02:00
Ricardo Wurmus 2573410865 gnu: withershins: Use new "libiberty" package. 
* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
   [arguments]: Simplify "find-libiberty" phase.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus 2b6b6d13e7 gnu: Add libiberty. 
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
 2015-06-29 21:01:13 +02:00
Ricardo Wurmus 74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus 82c370dea1 gnu: Add Blast+. 
* gnu/packages/bioinformatics.scm (blast+): New variable.
 2015-06-29 16:13:28 +02:00
Ludovic Courtès 11906b2c38 gnu: global: Update to 6.5. 
* gnu/packages/code.scm (global): Update to 6.5.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès 622a616e33 gnu: help2man: Update to 1.47.1. 
* gnu/packages/man.scm (help2man): Update to 1.47.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès b1f5fe0eb7 gnu: parallel: Update to 20150622. 
* gnu/packages/parallel.scm (parallel): Update to 20150622.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès dd138fc856 gnu: screen: Update to 4.3.1. 
* gnu/packages/screen.scm (screen): Update to 4.3.1.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès ce1e4bd58d gnu: texinfo: Add version 6.0. 
* gnu/packages/texinfo.scm (texinfo-6): New variable.
 2015-06-29 14:42:10 +02:00
Ludovic Courtès ab5f49cf6a gnu: gcc-4.8: Update to 4.8.5. 
* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
 2015-06-29 14:42:10 +02:00
Ricardo Wurmus cc6ed47737 gnu: Add plink. 
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
 2015-06-29 12:54:48 +02:00
Eric Bavier 5c852e085d gnu: synergy: Upgrade to 1.7.3. 
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
  [source]: Use github for source download.  Add snippet to remove
  bundled source and binaries.
  [inputs]: Add openssl.
  [arguments]: Copy example configuration files to out during 'install
  phase.
 2015-06-28 12:03:30 -05:00
Ricardo Wurmus b5ad1659ba gnu: Add sfarkxtc. 
* gnu/packages/compression.scm (sfarkxtc): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus 646898b358 gnu: Add sfarklib. 
* gnu/packages/compression.scm (sfarklib): New variable.
 2015-06-28 19:39:48 +02:00
Ricardo Wurmus fcbeb00b70 gnu: Add Guitarix. 
* gnu/packages/audio.scm (guitarix): New variable.
 2015-06-28 18:59:57 +02:00
Ricardo Wurmus fb029d463d gnu: ardour: Update to 4.1. 
* gnu/packages/audio.scm (ardour): Update to 4.1.
 2015-06-28 14:34:08 +02:00
Ricardo Wurmus 58593975b0 gnu: Add libtar. 
* gnu/packages/compression.scm (libtar): New variable.
 2015-06-28 12:38:46 +02:00
Claes Wallin 60def646bb gnu: Add pv. 
* gnu/package/pv.scm (pv): New file.
 * gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-06-27 17:27:49 +03:00
Ludovic Courtès c92f1c0a33 gnu: Refer to 'gcc' instead of 'gcc-4.9'. 
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
  libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
  (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
  %gcc-static, %gcc-stripped): Likewise.
 2015-06-26 17:06:30 +02:00
Ludovic Courtès 744985761a gnu: youtube-dl: Update to 2015.06.25. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
 2015-06-26 16:56:43 +02:00
Ricardo Wurmus 3a1bfe186d gnu: Add python2-fastlmm. 
* gnu/packages/python.scm (python2-fastlmm): New variable.
 2015-06-26 15:29:01 +02:00
Ricardo Wurmus 0dde623211 gnu: Add python2-pysnptools. 
* gnu/packages/python.scm (python2-pysnptools): New variable.
 2015-06-26 15:29:01 +02:00
Mark H Weaver 1c080cb68a gnu: nettle: Disable ifunc method of library initialization. 
* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
  phase.
 2015-06-25 16:47:59 -04:00
Ricardo Wurmus 19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus eed67cbb8f gnu: Add default GCC and default gfortran. 
* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
 2015-06-25 18:28:54 +02:00
宋文武 96693d1d92 gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'. 
This reverts commit e53fc0c8a, which add it wrongly to gst-plugins-base.

* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
  (gst-plugins-base)[native-search-paths]: Remove.
 2015-06-25 10:09:08 +08:00
Ludovic Courtès eae5b3fff5 linux-initrd: Produce cpio archives with zeroed timestamps, etc. 
* guix/cpio.scm (file->cpio-header*): New procedure.
* gnu/build/linux-initrd.scm (write-cpio-archive): Add #:file->header argument
  to 'cpio:write-cpio-archive'.
 2015-06-24 18:05:03 +02:00
Ludovic Courtès 583323ca1d linux-initrd: Populate cpio archives in a deterministic order. 
* gnu/build/linux-initrd.scm (write-cpio-archive)[files]: Use 'sort' instead
  of 'reverse'.
 2015-06-24 18:05:03 +02:00
Ludovic Courtès e8277f90c8 linux-initrd: Use (guix cpio) instead of GNU cpio. 
* gnu/build/linux-initrd.scm (write-cpio-archive): Remove 'open-pipe*' and
  related calls.  Compute list of files in 'files' variable.  Use
  'cpio:write-cpio-archive'.  Remove #:cpio parameter.
  (build-initrd): Remove #:cpio parameter.
* gnu/system/linux-initrd.scm (expression->initrd): Likewise, and adjust
  BUILDER accordingly.  Add (guix cpio) to #:modules.
 2015-06-24 18:05:03 +02:00
Ludovic Courtès 31fbf4b637 gnu: pius: Depend on GnuPG 2.0 rather than 2.1. 
* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.
 2015-06-24 18:05:03 +02:00
Ricardo Wurmus 6d149ec349 gnu: julia: Use modify-phases syntax and add return values. 
* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
  build phases and add missing return values.
 2015-06-24 15:34:55 +02:00
Ricardo Wurmus 83a0db178f gnu: r: Use gfortran-4.9. 
* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
  gfortran-4.9.
 2015-06-24 12:03:00 +02:00
Ricardo Wurmus c69a8b7b1b gnu: Add gfortran 4.9. 
* gnu/packages/gcc.scm (gfortran-4.9): New variable.
 2015-06-24 12:03:00 +02:00
Ben Woodcroft c684629f7c gnu: Add hmmer. 
* gnu/packages/bioinformatics.scm (hmmer): New variable.
 2015-06-24 00:39:22 -04:00
宋文武 5a72e4665a gnu: screen: Install the Info manual. 
* gnu/packages/screen.scm (screen)[native-inputs]: New field.
 2015-06-24 09:20:27 +08:00
Ricardo Wurmus ec8da0e25d gnu: Add setBfree. 
* gnu/packages/audio.scm (setbfree): New variable.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus 9e8505343e gnu: ftgl: Propagate "freetype". 
* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from
  "inputs" to "propagated-inputs".
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus 0543c32659 gnu: faust: Remove prebuilt library in snippet. 
* gnu/packages/audio.scm (faust)[arguments]: Remove the phase
  'remove-prebuilt-library...
* gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet.
 2015-06-23 21:41:42 +02:00
Ricardo Wurmus 4758eaaa2d gnu: star: Update to 2.4.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.
 2015-06-23 18:37:16 +02:00
Ricardo Wurmus 0ec8b206d4 gnu: miso: Install executables. 
* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
  "setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
  and "python2-pytz".
 2015-06-23 13:13:03 +02:00
Ricardo Wurmus c4325f6269 gnu: Add idr. 
* gnu/packages/bioinformatics.scm (idr): New variable.
 2015-06-23 10:55:52 +02:00
Mark H Weaver f3457e7001 gnu: linux-libre: Update to 4.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.
  [inputs]: Remove gcc-4.9, since it is now the default compiler.
* gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf:
  Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>.
 2015-06-23 02:53:00 -04:00
宋文武 b7a3cf11a8 gnu: Add gnome-klotski. 
* gnu/packages/gnome.scm (gnome-klotski): New variable.
 2015-06-23 14:16:42 +08:00
宋文武 49dc60f836 system: emacs-site-file: Use 'geiser-install to load geiser. 
Suggested by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (emacs-site-file): Use 'geiser-install to load geiser
  instead of setting 'geiser-guile-load-path' manually.
 2015-06-23 13:09:50 +08:00
Mark H Weaver 607a04ae80 gnu: Add gom. 
* gnu/packages/gnome.scm (gom): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver 86d6a893b3 gnu: Add clutter-gst. 
* gnu/packages/gnome.scm (clutter-gst): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver bf7f17bad8 gnu: Add clutter-gtk. 
* gnu/packages/gnome.scm (clutter-gtk): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver fb182b8a44 gnu: Add clutter. 
* gnu/packages/gnome.scm (clutter): New variable.
 2015-06-23 01:04:53 -04:00
Mark H Weaver ba421ab734 gnu: Add cogl. 
* gnu/packages/gnome.scm (cogl): New variable.
 2015-06-23 01:04:53 -04:00
Andreas Enge 22ad39187c gnu: sipwitch: Update to 1.9.8. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.8.
 2015-06-23 00:19:25 +02:00
Ludovic Courtès 89223417fd gnu: commencement: Make a few variables private. 
This removes ambiguity warnings when installing these packages.

* gnu/packages/commencement.scm (glibc-final, gcc-final,
  glibc-utf8-locales-final): Make private.
 2015-06-22 23:17:16 +02:00
Ludovic Courtès 790c3717d2 gnu: imagemagick: Do not retain reference to "doc" output. 
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Use 'modify-phases'.
  Add 'strip-configure-xml' phase.
 2015-06-22 23:17:16 +02:00
Andreas Enge 8c2dbe3f9d gnu: ucommon: Update to 6.3.4. 
* gnu/packages/telephony.scm (ucommon): Update to 6.3.4.
 2015-06-22 12:40:53 +02:00
Mark H Weaver bf76d98789 Merge branch 'master' into core-updates 2015-06-21 14:30:22 -04:00
Mark H Weaver fc9ff915b3 gnu: jemalloc: Build with gcc-4.8 on i686. 
* gnu/packages/jemalloc.scm (jemalloc)[native-inputs]: When compiling natively
  on i686, add gcc-4.8.
 2015-06-21 14:14:04 -04:00
Mark H Weaver 194782a881 gnu: lame: Build with gcc-4.8 on i686. 
* gnu/packages/mp3.scm (lame)[native-inputs]: When compiling natively on i686,
  add gcc-4.8.
 2015-06-21 14:08:39 -04:00
Ben Woodcroft 12b04cbee6 gnu: Add fasttree. 
* gnu/packages/bioinformatics.scm (fasttree): New variable.
 2015-06-21 03:30:40 -04:00
Mark H Weaver 407838510d gnu: ffmpeg: Update to 2.7.1. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.1.
 2015-06-21 01:18:03 -04:00
Mark H Weaver 4d6d82818a gnu: totem-pl-parser: Add gobject-introspection support. 
* gnu/packages/gnome.scm (totem-pl-parser)[native-inputs]: Add
  gobject-introspection.
 2015-06-20 23:51:41 -04:00
Mark H Weaver 22a6ad6a81 gnu: totem-pl-parser: Move glib, gmime, and libxml2 to propagated-inputs. 
* gnu/packages/gnome.scm (totem-pl-parser)[inputs]: Move glib, gmime, and
  libxml2 to ...
  [propagated-inputs]: ... here.
 2015-06-20 23:51:41 -04:00
Mark H Weaver 180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Mark H Weaver d80b0d4af5 gnu: gnome-doc-utils: Add python2-libxml2 to native-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/gnome.scm (gnome-doc-utils)[native-inputs]: Add
  python2-libxml2.
 2015-06-19 23:03:04 -04:00
Mark H Weaver 264d57b68a gnu: itstool: Add python2-libxml2 to propagated-inputs. 
This is a followup to commit 7ce3224247.

* gnu/packages/glib.scm (itstool)[propagated-inputs]: Add python2-libxml2.
 2015-06-19 23:02:36 -04:00
Mark H Weaver 9a6953d28a gnu: mdadm: Add compilation fix for gcc-4.9. 
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (mdadm): Add patch.
 2015-06-19 22:42:12 -04:00
Ludovic Courtès 94585e881f gnu: clang: Build without debugging symbols. 
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Add #:build-type.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès fd6ae1b983 gnu: clang: Allow 'clang' to link executables. 
* gnu/packages/patches/clang-libc-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/llvm.scm (clang-from-llvm)[source]: Use it.
  [inputs]: Add "gcc-lib".
  [arguments]. Add -DGCC_INSTALL_PREFIX and -DC_INCLUDE_DIRS to
  #:configure-flags.  Add #:phases argument.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès ef11ac8701 gnu: clang: Add search path specifications. 
* gnu/packages/llvm.scm (clang-from-llvm)[native-search-paths]: New field.
 2015-06-19 17:23:48 +02:00
Ludovic Courtès d0abf829a9 gnu: Add libstdc++ as a standalone package. 
* gnu/packages/gcc.scm (make-libstdc++): New procedure.
  (libstdc++-4.9): New variable.
* gnu/packages/commencement.scm (libstdc++): Add TODO comment.
 2015-06-19 17:23:47 +02:00
pjotrp 9942e8030d gnu: Add ruby 2.1.6 
* gnu/packages/ruby.scm (ruby-2.1): New variable.
 2015-06-19 08:27:27 -04:00
David Thompson 727636aaf8 gnu: Add control group file systems. 
* gnu/system/file-systems.scm (%control-groups): New variable.
  (%base-file-system): Include control group file systems.
 2015-06-19 07:49:18 -04:00
David Thompson 5fd77f3f43 gnu: Make 'mount' interface in static Guile consistent with Guix API. 
Rather than expecting a pointer, the version of 'mount' in
guile-static-stripped now takes a string for the 'options' argument, just like
the 'mount' procedure in (guix build syscalls).

* gnu/packages/patches/guile-linux-syscalls.patch (mount): Expect a string or
  #f for 'options' argument.
* gnu/build/file-systems.scm (mount-file-system): Use new 'mount' interface.
 2015-06-19 07:49:18 -04:00
Ludovic Courtès cbfb893493 gnu: unrtf: Update to 0.21.9. 
* gnu/packages/unrtf.scm (unrtf): Update to 0.21.9.
  [source]: Add 'modules' and 'snippet' fields.
  [arguments]: Remove.
 2015-06-19 11:08:20 +02:00
Ricardo Wurmus b22755be95 gnu: Add Raul. 
* gnu/packages/audio.scm (raul): New variable.
 2015-06-19 09:39:13 +02:00
Mark H Weaver 15b4ffa6f2 Merge branch 'master' into core-updates 2015-06-18 14:09:19 -04:00
Ricardo Wurmus b1fb59d3ef gnu: vamp: Update to 2.6. 
* gnu/packages/audio.scm (vamp): Update to 2.6.
 2015-06-18 16:29:19 +02:00
Ricardo Wurmus b7ed678494 gnu: Add zita-resampler. 
* gnu/packages/audio.scm (zita-resampler): New variable.
 2015-06-18 16:27:32 +02:00
Ricardo Wurmus 777291f007 gnu: Add Faust. 
* gnu/packages/audio.scm (faust): New variable.
 2015-06-18 16:27:32 +02:00
Ricardo Wurmus fe73aef43e gnu: Add Qsynth. 
* gnu/packages/audio.scm (qsynth): New variable.
 2015-06-18 16:27:32 +02:00
Mark H Weaver 8cbb562020 gnu: swig: Update to 3.0.5. 
* gnu/packages/swig.scm (swig): Update to 3.0.5.
 2015-06-18 09:46:55 -04:00
Mark H Weaver 379d41422c gnu: ocaml: Update gcc:lib input to gcc-4.9. 
* gnu/packages/ocaml.scm (ocaml)[inputs]: Use gcc:lib from gcc-4.9.
 2015-06-18 01:33:57 -04:00
Mark H Weaver 2abf678682 Merge branch 'master' into core-updates 2015-06-18 01:32:37 -04:00
Mark H Weaver 040ca34f7e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 684bf7c.
 2015-06-18 00:10:02 -04:00
Mark H Weaver 9ae1e92071 gnu: cpio: Fix symlink-bad-length test. 
* gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio): Add patch.
 2015-06-17 23:19:02 -04:00
Ben Woodcroft 684bf7c7f1 gnu: Add diamond. 
* gnu/packages/bioinformatics.scm (diamond): New variable.
 2015-06-17 19:43:54 -04:00
Ludovic Courtès 84189ebc66 Move 'specification->package+output' to (gnu packages). 
* guix/scripts/package.scm (specification->package+output): Move to...
* gnu/packages.scm (specification->package+output): ... here
* guix/scripts/archive.scm (guix): Adjust accordingly.
 2015-06-18 00:25:48 +02:00
Ludovic Courtès 08fa76131e install: Turn off deduplication for the binary tarball. 
* gnu/build/install.scm (register-closure): Add #:deduplicate? parameter and
  honor it.
  (populate-single-profile-directory): Likewise.
* gnu/system/install.scm (self-contained-tarball): Pass #:deduplicate? #f.
  Invoke tar with --check-links.
 2015-06-18 00:25:48 +02:00
Ludovic Courtès 2f6d3e417f gnu: ocaml: Don't rely on (gnu packages commencement). 
* gnu/packages/ocaml.scm (ocaml)[inputs]: Use (canonical-package gcc-4.8)
  instead of GCC-FINAL.
 2015-06-18 00:25:48 +02:00
Mark H Weaver ba981db293 gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 2c04921.
 2015-06-17 16:27:06 -04:00
Ricardo Wurmus 86517de69c gnu: miso: Use HTTPS URL. 
* gnu/packages/bioinformatics.scm (miso)[source]: Use "https" protocol for
  downloading the source tarball.
 2015-06-17 15:28:43 +02:00
Ricardo Wurmus 1bbc3b1d2c gnu: bedops: Update to 2.4.14. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.14.
 2015-06-17 14:37:29 +02:00
宋文武 6178d94706 gnu: Add wayland. 
* gnu/packages/freedesktop.scm (wayland): New variable.
 2015-06-17 18:29:15 +08:00
Alex Kost f5a9ffa006 system: Rename 'sudoers' into 'sudoers-file'. 
* gnu/system.scm (<operating-system>): Rename record field.
  (etc-directory): Rename argument.
  (operating-system-etc-directory): Adjust accordingly.
* doc/guix.texi (operating-system Reference): Likewise.
 2015-06-16 21:24:13 +03:00
Mark H Weaver 01e64ef504 gnu: talloc: Change source URI to use https. 
* gnu/packages/samba.scm (talloc)[source]: Change URI to use https.
 2015-06-16 14:20:56 -04:00
宋文武 2cba3d6f9e gnu: qt: Add more inputs. 
* gnu/packages/qt.scm (qt)[inputs]: Add cups, libmng, postgresql and unixodbc.
 2015-06-16 23:30:06 +08:00
宋文武 b9ecd5ae24 gnu: Add libmng. 
* gnu/packages/image.scm (libmng): New variable.
 2015-06-16 23:30:06 +08:00
宋文武 a33b8449a0 gnu: qt: Update to 5.4.2. 
* gnu/packages/qt.scm (qt): Update to 5.4.2.
 2015-06-16 23:30:06 +08:00
宋文武 d22b9397e1 gnu: qt-4: Update to 4.8.7. 
* gnu/packages/qt.scm (qt-4): Update to 4.8.7.
 2015-06-16 23:30:06 +08:00
宋文武 9e4552aac2 gnu: talloc: Update to 2.1.2. 
* gnu/packages/samba.scm (talloc): Update to 2.1.2.
 2015-06-16 23:30:05 +08:00
Andreas Enge d571101770 gnu: calibre: Update to 2.30.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.30.0.
 2015-06-16 12:33:08 +02:00
Mark H Weaver 8e28d22c91 gnu: libtiff: Add fixes for several CVEs. 
* gnu/packages/patches/libtiff-CVE-2012-4564.patch,
  gnu/packages/patches/libtiff-CVE-2013-1960.patch,
  gnu/packages/patches/libtiff-CVE-2013-1961.patch,
  gnu/packages/patches/libtiff-CVE-2013-4231.patch,
  gnu/packages/patches/libtiff-CVE-2013-4232.patch,
  gnu/packages/patches/libtiff-CVE-2013-4243.patch,
  gnu/packages/patches/libtiff-CVE-2013-4244.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch,
  gnu/packages/patches/libtiff-CVE-2014-8129.patch,
  gnu/packages/patches/libtiff-CVE-2014-9330.patch,
  gnu/packages/patches/libtiff-CVE-2014-9655.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[source]: Add patches.
 2015-06-16 01:02:01 -04:00
Mark H Weaver 7d02724b7b Merge branch 'master' into core-updates 2015-06-16 01:01:54 -04:00
Mark H Weaver fef3cfaaab gnu: qemu: Add fixes for CVE-2015-{4037,4103,4104,4105,4106}. 
* gnu/packages/patches/qemu-CVE-2015-4037.patch,
  gnu/packages/patches/qemu-CVE-2015-4103.patch,
  gnu/packages/patches/qemu-CVE-2015-4104.patch,
  gnu/packages/patches/qemu-CVE-2015-4105.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
 2015-06-16 00:29:28 -04:00
Mark H Weaver 77ff9e9a99 gnu: git: Update to 2.4.3. 
* gnu/packages/version-control.scm (git, git-manpages): Update to 2.4.3.
 2015-06-16 00:21:48 -04:00
Mark H Weaver 824d9dc301 gnu: ffmpeg: Update to 2.7. 
* gnu/packages/video.scm (ffmpeg): Update to 2.7.
  [native-inputs]: Add texinfo.
 2015-06-15 21:53:04 -04:00
Mark H Weaver 4c10c6cbc6 gnu: sqlite: Update to 3.8.10.2. 
* gnu/packages/databases.scm (sqlite): Update to 3.8.10.2.
 2015-06-15 20:37:46 -04:00
David Thompson e778a54950 gnu: Add ruby-multipart-post. 
* gnu/packages/ruby.scm (ruby-multipart-post): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 71d3e2c28d gnu: Add ruby-slop. 
* gnu/packages/ruby.scm (ruby-slop): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 66e2086364 gnu: Add ruby-git. 
* gnu/packages/ruby.scm (ruby-git): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 0808e361b0 gnu: Add ruby-minitest-bacon. 
* gnu/packages/ruby.scm (ruby-minitest-bacon): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 351308356c gnu: Add ruby-minitest-sprint. 
* gnu/packages/ruby.scm (ruby-minitest-sprint): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 2206e94892 gnu: Add ruby-minitest. 
* gnu/packages/ruby.scm (ruby-minitest): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson afbbdf7752 gnu: Add ruby-daemons. 
* gnu/packages/ruby.scm (ruby-daemons): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 4c0aeb44d6 gnu: Add ruby-net-http-persistent. 
* gnu/packages/ruby.scm (ruby-net-http-persistent): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson e259bdf008 gnu: Add ruby-connection-pool. 
* gnu/packages/ruby.scm (ruby-connection-pool): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson de59d31607 gnu: Add ruby-arel. 
* gnu/packages/ruby.scm (ruby-arel): New variable.
 2015-06-15 20:27:38 -04:00
David Thompson 96086cc540 gnu: Add ruby-bacon. 
* gnu/packages/ruby.scm (ruby-bacon): New variable.
 2015-06-15 20:27:38 -04:00
Ludovic Courtès d3b4c1358c gnu: tar: Skip tests that rely on undefined unlinkat(2) behavior. 
Fixes <http://bugs.gnu.org/20597>.
Reported by Andrew Patterson <ajpatter@uwaterloo.ca>.

* gnu/packages/patches/tar-skip-unreliable-tests.patch: New file.
* gnu/packages/base.scm (tar)[source](patches): Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-16 00:27:27 +02:00
Ludovic Courtès 25cc3fe703 gnu: gettext: Fix non-deterministic msgunfmt behavior. 
Suggested by Alírio Eyng <alirioeyng@gmail.com>.

* gnu/packages/patches/gettext-msgunfmt.patch: New file.
* gnu/packages/gettext.scm (gnu-gettext)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-15 23:34:01 +02:00
amz3 975b8942a6 gnu: Rename (gnu packages dwm) to (gnu packages suckless). 
* gnu/packages/dwm.scm: Rename this ...
* gnu/packages/suckless.scm: ... to this.
* gnu-system.am (GNU_SYSTEM_MODULES): Change dwm.scm to suckless.scm.
 2015-06-15 17:25:41 -04:00
amz3 3a7334209e gnu: Add st. 
* gnu/packages/dwm.scm (st): New variable.
 2015-06-15 17:25:37 -04:00
Ludovic Courtès 4a3bcaee5a services: Remove lsh service from %DESKTOP-SERVICES. 
Suggested by Mark H Weaver and others
at <http://lists.gnu.org/archive/html/guix-devel/2015-06/msg00227.html>.

* gnu/services/desktop.scm (%desktop-services): Remove call to 'lsh-service'.
* doc/guix.texi (Desktop Services): Adjust accordingly.
 2015-06-15 17:41:54 +02:00
Federico Beffa 00f4bd509f gnu: Add haskell-mode. 
* gnu/packages/emacs.scm (haskell-mode): New variable.
 2015-06-15 15:18:11 +02:00
Ludovic Courtès 1f175851e6 gnu: make-bootstrap: Build libbacktrace, required by cc1. 
Fixes <http://hydra.gnu.org/build/506982/nixlog/1/tail-reload>.

* gnu/packages/make-bootstrap.scm (%gcc-static): Remove
  --disable-libbacktrace.  It is needed by cc1-checksum.
 2015-06-15 15:01:55 +02:00
Ricardo Wurmus be0a4c261e gnu: python-scikit-learn: Update to 0.16.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus a98c6eccf8 gnu: orfm: Update to 0.4.1. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.4.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus 2f6b3d2e7e gnu: python-scikit-learn: Use OpenBLAS instead of ATLAS. 
* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
  "openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
  'set-environment-variables, which is only needed when ATLAS is used.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus 719b01c157 gnu: python-scipy: Build with OpenBLAS and lapack. 
* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
  and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
  "set-environment-variables" with "configure-openblas".
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus cba256f8fa gnu: python-numpy-bootstrap: Add lapack to inputs. 
* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
  inputs, because OpenBLAS does not include lapack functions.
 2015-06-15 10:36:41 +02:00
Ricardo Wurmus 2e189eb89f gnu: lv2: Update to 1.12.0. 
* gnu/packages/audio.scm (lv2): Update to 1.12.0.
 2015-06-15 08:07:37 +02:00
Ludovic Courtès 86d7043cad gnu: make-bootstrap: Update patching of gawk's configure. 
* gnu/packages/make-bootstrap.scm (%static-inputs)[gawk]: Change
  "-export-dynamic" to "-Wl,-export-dynamic" to account for current
  'configure' file.
 2015-06-15 00:09:25 +02:00
Ludovic Courtès 8dca238b15 gnu: make-bootstrap: Switch to GCC 4.9. 
* gnu/packages/make-bootstrap.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (%gcc-static): Add --disable-libcilkrts, --disable-libvtv,
  --disable-libbacktrace.
 2015-06-15 00:09:24 +02:00
Mark H Weaver a0d385b052 gnu: screen: Update to 4.3.0. 
* gnu/packages/screen.scm (screen): Update to 4.3.0.
 2015-06-14 12:19:32 -04:00
Mark H Weaver 1a802c7ec2 gnu: openssl: Update to 1.0.2c. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2c.
 2015-06-14 08:49:50 -04:00
Mark H Weaver bcf2971f6e Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/commencement.scm
	gnu/packages/xml.scm
 2015-06-14 08:49:42 -04:00
Ludovic Courtès ec29907160 gnu: gcc: Build libsanitizer's bundled libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Also patch
  libsanitizer/libbacktrace/Makefile.in.
 2015-06-14 14:41:01 +02:00
Mark H Weaver 7871724df7 gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-13 23:01:07 -04:00
Mark H Weaver 0ad8f76f7f gnu: perl-net-ssleay: Disable test that fails with openssl-1.0.2b. 
* gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
 2015-06-13 23:01:07 -04:00
Mark H Weaver 4c50e5ab3a gnu: python: Disable ssl test that fails with openssl-1.0.2b. 
* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
 2015-06-13 23:01:07 -04:00
Ludovic Courtès b5616bc33d ld-wrapper: Ignore .so files specified after "-plugin" for RUNPATH purposes. 
Reported by Mark H Weaver
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20102#58>.

* gnu/packages/ld-wrapper.in (library-files-linked): Handle "-plugin"
  similarly to "-dynamic-linker".
 2015-06-14 01:00:27 +02:00
Ludovic Courtès 932e7204af gnu: guix: Wrap 'guix' so GUILE_LOAD_PATH includes the dependencies. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Add
  'wrap-program' phase.
 2015-06-13 22:33:37 +02:00
Ludovic Courtès 02c2cf43ce gnu: guix: Use 'modify-phases'. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Use
  'modify-phases' instead of 'alist-cons-before'.
 2015-06-13 22:33:37 +02:00
Eric Bavier 0061079a19 gnu: Add hydra. 
* gnu/packages/ci.scm: New file.
* gnu/packages/patches/hydra-automake-1.15.patch,
  gnu/packages/patches/hydra-disable-darcs-test.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add file.
  (dist_patch_DATA): Add patches.
 2015-06-13 08:05:01 -05:00
Eric Bavier 6e545bbf55 gnu: Add Catalyst-Authentication-Store-DBIx-Class. 
* gnu/packages/web.scm (perl-catalyst-authentication-store-dbix-class):
  New variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier 514214cbe5 gnu: Add Catalyst-Plugin-Authorization-Roles. 
* gnu/packages/web.scm (perl-catalyst-plugin-authorization-roles): New
  variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier 1937e38d06 gnu: Add Set-Object. 
* gnu/packages/perl.scm (perl-set-object): New variable.
 2015-06-13 08:05:00 -05:00
Ricardo Wurmus 8b9ec354ed gnu: Add powertabeditor. 
* gnu/packages/music.scm (powertabeditor): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus 14a17ef6f4 gnu: catch-framework: Update to 1.1.3. 
* gnu/packages/check.scm (catch-framework): Update to 1.1.3.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus cc45cff83a gnu: Add rtmidi. 
* gnu/packages/audio.scm (rtmidi): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus 6ce212b868 gnu: Add pugixml. 
* gnu/packages/xml.scm (pugixml): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus ccb8da2654 gnu: Add RapidJSON. 
* gnu/packages/web.scm (rapidjson): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus 76e146384c gnu: Add withershins. 
* gnu/packages/code.scm (withershins): New variable.
 2015-06-12 23:01:33 +02:00
Ludovic Courtès e1ad6bfbe1 install: Use udev rules for device-mapper. 
Fixes <http://bugs.gnu.org/20791>.
Reported by Benz Schenk <benz.schenk@uzh.ch>.

* gnu/system/install.scm (installation-services): Add #:rules argument for
  'udev-service'.
 2015-06-12 19:29:52 +02:00
Manolis Ragkousis 16cae799db gnu: patch: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/patch-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-12 15:46:25 +03:00
Ben Woodcroft 1e44cf8b0f gnu: Add OrfM. 
* gnu/packages/bioinformatics.scm (orfm): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 47da6268c4 gnu: icedtea7: Bootstrap with GCJ. 
* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
  with IcedTea6.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 36742f4389 gnu: Add Couger. 
* gnu/packages/bioinformatics.scm (couger): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 0931c6091c gnu: Add randomjungle. 
* gnu/packages/machine-learning.scm (randomjungle): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 71f80f5487 gnu: Add python-libsvm. 
* gnu/packages/machine-learning.scm (python-libsvm): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus 741115b649 gnu: Add libsvm. 
* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus e0a02cb21f gnu: ngs-sdk: Update to version 1.1.1. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1.
 2015-06-12 12:57:29 +02:00
Eric Bavier 48d21d6cd6 gnu: ghc: Patch runtime references to /bin/sh. 
* gnu/packages/haskell.scm (ghc)[arguments]: Rename
  'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'.
  Patch source files that reference /bin/sh.
 2015-06-11 18:55:49 -05:00
Mark H Weaver dc7b1817f6 Revert "gnu: openssl: Update to 1.0.2b." 
This reverts commit 4f467e33de.
 2015-06-12 01:46:03 -04:00
Mark H Weaver 4f467e33de gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-12 01:25:23 -04:00
Ludovic Courtès e21adc768e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to a43b55f.
  [source]: Add 'file-name' field.
  [native-inputs]: Add HELP2MAN.
 2015-06-11 23:33:32 +02:00
Ludovic Courtès 0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver b45ce07a8a gnu: gnupg: Update to 2.1.5. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5.
 2015-06-11 14:39:22 -04:00
宋文武 4510b2da3e gnu: Add librest. 
* gnu/packages/gnome.scm (librest): New variable.
 2015-06-11 23:30:54 +08:00
Mark H Weaver 8b1c8e4e27 gnu: inetutils: Update to 1.9.4. 
* gnu/packages/admin.scm (inetutils): Update to 1.9.4.
 2015-06-11 10:08:01 -04:00
Mark H Weaver 1492801655 Merge branch 'master' into core-updates 2015-06-10 17:50:27 -04:00
Mark H Weaver 1511e02355 gnu: nettle: Update to 3.1.1. 
* gnu/packages/nettle.scm (nettle): Update to 3.1.1.
 2015-06-10 17:49:11 -04:00
Mark H Weaver 70ca2e94d1 gnu: which: Update to 2.21. 
* gnu/packages/base.scm (which): Update to 2.21.
 2015-06-10 17:39:08 -04:00
Ludovic Courtès 2a1552c608 gnu: cross-base: Do not strip cross-gcc. 
Fixes a regression introduced in 9063ef0 whereby #:strip-binaries? would be
left to #t, leading to an invalid cross-built libgcc.a (see
<http://hydra.gnu.org/build/492479/nixlog/1/tail-reload>.)

* gnu/packages/cross-base.scm (cross-gcc-arguments): Add #:strip-binaries? #f
  unconditionally.  Replace 'install' phase to use "make install-strip".
 2015-06-10 23:19:30 +02:00
Mark H Weaver 3dbb0e5f8b gnu: qemu: Add fix for CVE-2015-3209. 
* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
 2015-06-10 15:42:16 -04:00
Mark H Weaver e51943f886 gnu: cups: Update to 2.0.3. 
* gnu/packages/cups.scm (cups): Update to 2.0.3.
 2015-06-10 14:50:28 -04:00
Mark H Weaver 63398a25ba gnu: linux-libre: Update to 4.0.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.0.5.
 2015-06-10 11:37:37 -04:00
Ludovic Courtès aea9b23213 install: Really overwrite TARGET/var/guix/profiles/system-1-link. 
* gnu/build/install.scm (populate-root-file-system): Delete system-1-link
  under TARGET, not under /.  Use 'catch' and check for EEXIST instead of
  (false-if-exception (delete-file ...)).
 2015-06-10 10:31:25 +02:00
Ludovic Courtès ab999c2516 gnu: commencement: Remove "debug" output of GCC-FINAL. 
Fixes a regression introduced in 9063ef0.

* gnu/packages/commencement.scm (gcc-final)[outputs]: New field.
 2015-06-10 09:37:36 +02:00
Ludovic Courtès d0b62698c9 gnu: gcc: Build libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments] <pre-configure>: Remove -Werror
  from libbacktrace/configure.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès 9063ef0f79 gnu: gcc: Add "debug" output, debugging symbols of libraries. 
* gnu/packages/gcc.scm (gcc-4.7)[install-target]: Remove.
  [outputs]: Add "debug".
  [arguments]: Remove #:strip-binaries?.  Remove 'install' phase.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès 811974925d gnu: gcc: Do not add -rpath=LIBDIR/lib64 to the "lib" spec. 
* gnu/packages/gcc.scm (gcc-4.7): Remove unneeded LIBDIR/lib64 from
  GNU_USER_TARGET_LIB_SPEC.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès e58652502b gnu: make-bootstrap: Adjust gawk patch to 4.1.3. 
* gnu/packages/patches/gawk-shell.patch: Update for gawk 4.1.3.
 2015-06-09 22:32:15 +02:00
Manolis Ragkousis 30347caae7 gnu: guile-static: Use Linux syscalls only on Linux-based systems. 
* gnu/packages/patches/guile-linux-syscalls.patch: Use Linux
  syscalls only on Linux-based systems.
 2015-06-09 22:48:10 +03:00
宋文武 329d13b8ea gnu: mysql: Update to 5.6.25. 
* gnu/packages/databases.scm (mysql): Update to 5.6.25.
  [source]: Use 'version-major+minor'.
  [build-system]: Change to cmake-build-system.  Adjust arguments
  accordingly.
  [inputs]: Add libaio.  Remove procps.  Move perl to 'native-inputs'.
 2015-06-09 18:16:14 +08:00
Mark H Weaver 0705f79c6f gnu: Add proof-general. 
* gnu/packages/ocaml.scm (proof-general): New variable.
 2015-06-08 20:08:50 -04:00
Ludovic Courtès 7acd3439ea install: Omit /root from the binary tarball. 
Suggested by Thomas Schwinge <thomas@codesourcery.com>.

* gnu/system/install.scm (self-contained-tarball): Remove
  "/root/.guix-profile" from the 'tar' arguments.
* doc/guix.texi (Binary Installation): Add a step to create
  ~root/.guix-profile.
 2015-06-08 23:25:51 +02:00
Mark H Weaver f8badf151b gnu: commencement: Use our Binutils as soon as possible. 
* gnu/packages/commencement.scm (binutils-boot0)[arguments]: Add
  'add-symlinks' phase.
 2015-06-08 16:14:03 -04:00
Manolis Ragkousis 56eba3d152 gnu: sed: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/sed-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-08 22:26:28 +03:00
Mark H Weaver ae9b96c784 gnu: youtube-dl: Update to 2015.06.04.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1.
 2015-06-08 15:07:30 -04:00
宋文武 c769cf9f2a gnu: evince: Update to 3.16.1, add more inputs. 
* gnu/packages/gnome.scm (evince): Update to 3.16.1.
  [inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret.

Co-authored-by: David Hashe <david.hashe@dhashe.com>
 2015-06-08 20:42:31 +08:00
宋文武 faf713b9d0 gnu: geoclue: Update to 2.2.0. 
* gnu/packages/gnome.scm (geoclue): Update to 2.2.0.
 2015-06-08 18:02:28 +08:00
Ricardo Wurmus dbdfe51598 gnu: python-numpy: Build against OpenBLAS. 
* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
  "atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
  OpenBLAS.

Modified-By: Mark H Weaver <mhw@netris.org>
 2015-06-07 17:30:40 -04:00
Mark H Weaver 716e20a2bc gnu: icecat: Update to 31.7.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1.  Remove patches.
 2015-06-06 08:02:45 -04:00
Mark H Weaver 8850303e76 gnu: tor: Update to 0.2.6.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.6.8.
  [native-inputs]: Add python-2.
 2015-06-06 00:51:10 -04:00
Ludovic Courtès 24e02c28fb system: 'hosts-file' is now a file-like object. 
Partly fixes <http://bugs.gnu.org/20720>.
Reported by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (default-/etc/hosts): Change 'text-file' to 'plain-file'.
  (maybe-file->monadic): New procedure.
  (operating-system-etc-directory): Use it.
* doc/guix.texi (operating-system Reference, Networking Services): Adjust
  accordingly.
 2015-06-05 22:41:55 +02:00
Ludovic Courtès 847658395e system: 'sudoers' is now a file-like object. 
Partly fixes <http://bugs.gnu.org/20720>
Reported by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (etc-directory): Change default #:sudoers value to a
  'plain-file'.  Don't bind it.  Remove #~#$.
  (maybe-string->file): New procedure.
  (operating-system-etc-directory): Use it.
  (%sudoers-specification): Use 'plain-file'.
* doc/guix.texi (operating-system Reference): Adjust accordingly.
 2015-06-05 20:22:47 +02:00
Ludovic Courtès 97cc51f876 gnu: Add magit-svn. 
* gnu/packages/emacs.scm (magit-svn): New variable.
 2015-06-05 12:13:38 +02:00
Mark H Weaver 1973183b63 gnu: Add coq. 
* gnu/packages/ocaml.scm (coq): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver d6b7b5edec gnu: Add hevea. 
* gnu/packages/ocaml.scm (hevea): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver 83f4dc36e2 gnu: Add camlp5. 
* gnu/packages/ocaml.scm (camlp5): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver 69b8f08cbd gnu: ocaml: Update to 4.02.1. 
* gnu/packages/ocaml.scm (ocaml)[version]: Update to 4.02.1.
  [source]: Use 'version-major+minor'.  Use .xz tarball.
  [home-page]: Update URI.
  [license]: gpl2 -> lgpl2.0.
  [inputs]: Add libx11, gcc:lib, and zlib.  Remove perl.
  [native-inputs]: New field, with perl and pkg-config.
  [arguments]: In #:modules, remove (srfi srfi-1), add (web server).  Use
  'modify-phases'.  Enable parallel build.  Add 'patch-/bin/sh-references' and
  'prepare-socket-test' phases.  Rename 'check-after-install' phase to
  'check'.  Use 'with-directory-excursion' in 'check' phase.  Remove unused
  keyword arguments from custom phases.
 2015-06-05 00:58:53 -04:00
宋文武 4a79e256f0 gnu: Add devhelp. 
* gnu/packages/gnome.scm (devhelp): New variable.
 2015-06-05 12:46:20 +08:00
宋文武 4becc79273 gnu: guile-opengl: Patch dynamic-link call for 'libGLU' to glu. 
* gnu/packages/gl.scm (guile-opengl)[inputs]: Add glu.
  [arguments]: Patch dynamic-link call for 'libGLU' to glu instead of
  mesa in the 'patch-dynamic-link' phase.
 2015-06-05 12:17:18 +08:00
Andreas Enge 16c62e1fc4 gnu: Add LibreOffice. 
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice, libreoffice):
  New variables.

Co-authored-by: John Darrington <jmd@gnu.org>
 2015-06-04 22:59:18 +02:00
Ludovic Courtès 8d866b96f7 gnu: Switch to GCC 4.9 as the default cross-compiler. 
* gnu/packages/cross-base.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
 2015-06-04 18:07:26 +02:00
Ludovic Courtès de4ac32527 gnu: Switch to GCC 4.9 as the default compiler. 
* gnu/packages/commencement.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (gcc-boot0)[arguments]: Add --disable-libcilkrts --disable-libvtv.
 2015-06-04 18:05:52 +02:00
Ludovic Courtès b15389e159 gnu: linux-libre-headers: Do not retain reference to the bootstrap tools. 
* gnu/packages/linux.scm (linux-libre-headers)[install-phase]: Remove
  ".install" files from the output.
  [arguments]: Add #:allowed-references.
 2015-06-04 14:37:53 +02:00
Ludovic Courtès 67dfa1986d gnu: findutils: Use /var as the localstatedir, for 'updatedb'. 
* gnu/packages/patches/findutils-localstatedir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (findutils)[source]: Use it.
  [arguments]: Pass --localstatedir=/var.
 2015-06-04 12:49:43 +02:00
Ludovic Courtès 696062b1f0 gnu: perl: Strip the DSOs. 
* gnu/packages/perl.scm (perl)[arguments]: Add 'make-shared-objects-writable'
  phase.
 2015-06-04 11:24:07 +02:00
Ludovic Courtès f683d67d66 gnu: perl: Use 'modify-phases'. 
* gnu/packages/perl.scm (perl)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-06-04 11:18:59 +02:00
Ludovic Courtès 2068559ba0 gnu: gcc: Move patch upstream status in the patch itself. 
* gnu/packages/patches/gcc-arm-link-spec-fix.patch: Add bug and patch URLs.
* gnu/packages/gcc.scm (gcc-4.8): Remove them.
 2015-06-04 09:30:20 +02:00