Commit Graph

8519 Commits

Author SHA1 Message Date
Ricardo Wurmus d1e32822b4 gnu: Add PePr.
* gnu/packages/bioinformatics.scm (pepr): New variable.
2016-03-01 11:51:24 +01:00
Ricardo Wurmus d29150b55d gnu: Add bwa-pssm.
* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
2016-03-01 10:31:04 +01:00
Ricardo Wurmus b4464d384c gnu: Add gdsl.
* gnu/packages/datastructures.scm (gdsl): New variable.
2016-03-01 10:30:04 +01:00
Efraim Flashner e288f0075c gnu: weechat: Move to irc.scm.
* gnu/packages/weechat.scm (weechat): Move from here ...
* gnu/packages/irc.scm (weechat): ... to here.
* gnu/packages/weechat.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm.
2016-03-01 11:09:32 +02:00
Efraim Flashner a61bd6a5e3 gnu: irssi: Use 'modify-phases'.
* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'.
2016-03-01 11:09:32 +02:00
Efraim Flashner 27930f853d gnu: irssi: Move to irc.scm.
* gnu/packages/irssi.scm (irssi): Move from here ...
* gnu/packages/irc.scm (irssi): ... to here.
* gnu/packages/irssi.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm.
2016-03-01 11:09:32 +02:00
Efraim Flashner 980f058d92 gnu: Add quassel.
* gnu/packages/irc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
2016-03-01 11:09:32 +02:00
Efraim Flashner 550791b8f1 gnu: Add snorenotify.
* gnu/packages/kde.scm (snorenotify): New variable.
2016-03-01 11:09:32 +02:00
Efraim Flashner d34c594aeb gnu: Add qca.
* gnu/packages/kde.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
2016-03-01 11:09:32 +02:00
Efraim Flashner d8ea278204 gnu: Add oxygen-icons.
* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable.
2016-03-01 11:09:32 +02:00
Manolis Ragkousis fea1f275bc gnu: Add desmume.
* gnu/packages/games.scm (desmume): New variable.
2016-02-29 22:04:53 -05:00
Mark H Weaver 8d5ceb120d gnu: curl: Use updated libssh2 [fixes CVE-2016-7087].
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2.
* gnu/packages/ssh.scm (libssh2-1.4): Remove variable.
2016-02-29 20:09:29 -05:00
Christopher Allan Webber aa5946edb2 gnu: Remove python2-pil.
python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533).  Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.

* gnu/packages/python.scm (python2-pil): Remove variable.
2016-02-29 15:01:20 -08:00
Ricardo Wurmus daeb61f7a9 gnu: guile-for-guile-emacs: Use guile-2.0 search paths.
* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]:
  Use the same search paths as guile-2.0.
2016-02-29 07:10:40 +01:00
Leo Famulari 823e2ed4b3 gnu: msmtp: Install msmtpq.
* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts.
2016-02-28 22:06:24 -05:00
Ludovic Courtès 1a59b6d014 gnu: git: Install symlinks instead of hard links.
This reduces nar size by a factor of 10.
Fixes <http://bugs.gnu.org/21949>.

* gnu/packages/version-control.scm (git)[arguments]: Pass
NO_INSTALL_HARDLINKS as #:make-flags.
2016-02-28 16:41:53 +01:00
Andreas Enge dbb7a08175 gnu: libwnck: Rename variable for GTK+ 2 variant.
* gnu/packages/gnome.scm (libwnck-1): Rename this...
  (libwnck-2): ...to this.
* gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session,
  xfwm4, xfdesktop)[inputs]: Adapt.
2016-02-28 15:59:56 +01:00
Ludovic Courtès 52c0c82f52 gnu: bootstrap: Honor the origin's names.
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2016-02/msg01100.html>.

* gnu/packages/bootstrap.scm (bootstrap-origin)[boot]: Honor NAME.
2016-02-28 15:25:03 +01:00
Efraim Flashner 2236da6e97 gnu: xrandr: Update to 1.5.0.
* gnu/packages/xorg.scm (xrandr): Update to 1.5.0.
2016-02-28 14:13:30 +02:00
Efraim Flashner 97a0859593 gnu: libqmi: Update to 1.12.8.
* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8.
2016-02-28 13:42:34 +02:00
Efraim Flashner 9012e118ff gnu: wayland: Update to 1.10.0.
* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0.
[arguments]: Disable parallel tests.
2016-02-28 13:32:52 +02:00
Efraim Flashner d3e3d7f02a gnu: libinput: Update to 1.2.0.
* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0.
2016-02-28 13:08:08 +02:00
Efraim Flashner a724924beb gnu: python-tornado: Update to 4.3.
* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
2016-02-28 10:53:42 +02:00
Efraim Flashner 6b59fc1020 gnu: Add python-backports-abc.
* gnu/packages/python.scm (python-backports-abc): New variable.
2016-02-28 10:53:35 +02:00
Mark H Weaver 9579118922 gnu: bitlbee: Update to 3.4.1.
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
2016-02-27 21:10:56 -05:00
Tobias Geerinckx-Rice 9c7f7e2da9 gnu: btrfs-progs: Update to 4.4.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-02-27 22:39:51 +02:00
Ricardo Wurmus a003b5b650 gnu: scribus: Update to 1.5.1.
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-02-27 16:34:20 +01:00
Ricardo Wurmus b951e26fe5 gnu: arandr: Add "xrandr" to inputs.
* gnu/packages/xdisorg.scm (arandr)[inputs]: Add "xrandr".
[arguments]: Add build phase "make-xrandr-available" to ensure "xrandr"
executable is found at runtime.
2016-02-27 16:25:26 +01:00
Mark H Weaver 5c19dab945 gnu: wrap-python3: Remove extraneous commas from Scheme lists.
* gnu/packages/python.scm (wrap-python3): Remove commas from Scheme lists.
2016-02-27 08:53:05 -05:00
Mark H Weaver 048ec1a8b0 Merge branch 'master' into core-updates 2016-02-27 08:52:23 -05:00
Mark H Weaver b35461748b gnu: Fix misplaced commas (unquote).
Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.

* gnu/packages/base.scm (patch, gnu-make),
  gnu/packages/bioinformatics.scm (hmmer),
  gnu/packages/bittorrent.scm (aria2),
  gnu/packages/compression.scm (pbzip2),
  gnu/packages/databases.scm (recutils),
  gnu/packages/fonts.scm (font-terminus),
  gnu/packages/freedesktop.scm (xdg-utils, elogind),
  gnu/packages/games.scm (gnujump),
  gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
  gnu/packages/gnunet.scm (gnunet),
  gnu/packages/gnuzilla.scm (mozjs, nspr),
  gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
  gnu/packages/lua.scm (lua),
  gnu/packages/openstack.scm (python-swiftclient),
  gnu/packages/perl.scm (perl-json-any),
  gnu/packages/polkit.scm (polkit-qt),
  gnu/packages/python.scm (wrap-python3, python-oauthlib)
  (python-mccabe-0.2.1, python-contextlib2, python2-rauth),
  gnu/packages/qt.scm (qtkeychain),
  gnu/packages/ruby.scm (ruby-nokogiri),
  gnu/packages/screen.scm (screen),
  gnu/packages/ssh.scm (libssh),
  gnu/packages/video.scm (ffmpeg, mplayer),
  gnu/packages/vim.scm (vim),
  gnu/packages/xdisorg.scm (redshift),
  gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
  gnu/packages/xnee.scm (xnee),
  gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
  gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
2016-02-27 08:49:26 -05:00
Ricardo Wurmus 48766ea85f gnu: Add emacs-god-mode.
* gnu/packages/emacs.scm (emacs-god-mode): New variable.
2016-02-27 13:50:18 +01:00
Ricardo Wurmus 048bfba163 gnu: Add gtklick.
* gnu/packages/music.scm (gtklick): New variable.
2016-02-27 12:27:21 +01:00
Ricardo Wurmus 6ab4712d6e gnu: python2-pygtk: Add libglade to inputs.
* gnu/packages/gtk.scm (python2-pygtk)[inputs]: Add "libglade".
2016-02-27 12:27:21 +01:00
Ricardo Wurmus a91d72e23a gnu: Add pyliblo.
* gnu/packages/audio.scm (python-pyliblo, python2-pyliblo): New
  variables.
2016-02-27 12:27:21 +01:00
Mark H Weaver b460a99890 gnu: linux-libre-4.1: Update to 4.1.18.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.18.
2016-02-27 02:36:16 -05:00
Mark H Weaver 3dad786b64 gnu: linux-libre: Update to 4.4.3.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.3.
2016-02-27 02:36:10 -05:00
Mark H Weaver 4ed737b2ab gnu: gtk-doc: Improve fix-docbook phase.
* gnu/packages/gtk.scm (gtk-doc)[arguments]: In the 'fix-docbook' phase,
avoid hard-coding the docbook-xsl version number, and return #t.
2016-02-25 22:24:32 -05:00
Danny Milosavljevic b31fbea566 gnu: Add python-psycopg2.
* gnu/packages/python.scm (python-psycopg2, python2-psycopg2): New variables.
2016-02-25 14:35:28 -08:00
Leo Famulari 7dd21101a3 gnu: diffoscope: Update to 49.
* gnu/packages/package-management.scm (diffoscope): Update to 49.
[source]: Use pypi-uri.
[arguments]: Use python-3. Enable tests. Add 'dependency-on-python-magic' phase
and remove 'dependency-on-rpm' phase.
[native-inputs]: Remove python2-setuptools.
[inputs]: Replace python2-file, python2-debian, python2-libarchive-c,
python2-tlsh, python2-pytest, python2-chardet with python-3 variants.
2016-02-25 17:06:25 -05:00
Rene Saavedra 66d59111e3 gnu: Add dconf-editor.
* gnu/packages/gnome.scm (dconf-editor): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-25 16:36:10 -05:00
Andy Wingo 735e84c7bd gnu: libx264: Change source URL to HTTP.
* gnu/packages/video.scm (libx264): Download via HTTP.  The videolan ftp
  server does not work with IPv6.
2016-02-25 22:33:40 +01:00
Andy Wingo b4787e71ac gnu: gtk-doc: Fix build.
* gnu/packages/gtk.scm (gtk-doc): Fix build.
2016-02-25 22:33:20 +01:00
Efraim Flashner 2865c81c71 gnu: youtube-dl: Update to 2016.02.22.
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.22.
2016-02-25 22:54:03 +02:00
Efraim Flashner eb6e2e812a gnu: python-decorator: Update to 4.0.9.
* gnu/packages/python.scm (python-decorator): Update to 4.0.9.
2016-02-25 21:05:37 +02:00
Efraim Flashner cc0c4fdedd gnu: python-traitlets: Update to 4.1.0.
* gnu/packages/python.scm (python-traitlets): Update to 4.1.0.
[native-inputs]: Add python-mock.
2016-02-25 21:05:37 +02:00
Efraim Flashner c6ebd40da1 gnu: python-mccabe: Update to 0.4.0.
* gnu/packages/python.scm (python-mccabe): Update to 0.4.0.
[inputs]: Add python-pytest, python-pytest-runner.
(python-mccabe-0.2.1)[inputs]: Only use python-setuptools.
2016-02-25 21:05:37 +02:00
Efraim Flashner 43789136d2 gnu: python-flake8: Update to 2.5.4.
* gnu/packages/python.scm (python-flake8): Update to 2.5.4.
[inputs]: Use recent python-pep8, python-pyflakes.
2016-02-25 21:05:37 +02:00
Efraim Flashner db251311cf gnu: python-pep8: Update to 1.7.0.
* gnu/packages/python.scm (python-pep8): Update to 1.7.0.
2016-02-25 21:05:37 +02:00
Efraim Flashner a4d9609c98 gnu: python-networkx: Update to 1.11.
* gnu/packages/python.scm (python-networkx): Update to 1.11.
2016-02-25 21:05:37 +02:00
Efraim Flashner 6f068e081b gnu: python-hypothesis: Update to 3.0.4.
* gnu/packages/python.scm (python-hypothesis): Update to 3.0.4.
[native-inputs]: Remove python-setuptools.
(python2-hypothesis): Use 'strip-python2-variant'.
[native-inputs]: Add python2-enum34, python2-setuptools.
2016-02-25 21:05:37 +02:00
Efraim Flashner fee04c198c gnu: python-html5lib: Update to 1.0b8.
* gnu/packages/python.scm (python-html5lib): Update to 1.0b8.
2016-02-25 21:05:37 +02:00
Efraim Flashner b6785c2e3a gnu: python-isodate: Update to 0.5.4.
* gnu/packages/python.scm (python-isodate): Update to 0.5.4.
2016-02-25 21:05:37 +02:00
Efraim Flashner 9d813ec147 gnu: python-wsgi-intercept: Update to 1.1.2.
* gnu/packages/python.scm (python-wsgi-intercept): Update to 1.1.2.
[native-inputs]: Add python-six.
2016-02-25 21:05:37 +02:00
Efraim Flashner 29f20168cf gnu: python-pytest-localserver: Update to 0.3.5.
* gnu/packages/python.scm (python-pytest-localserver): Update to 0.3.5.
2016-02-25 21:05:37 +02:00
Efraim Flashner da8b011d2a gnu: python-requests-toolbelt: Update to 0.6.0.
* gnu/packages/python.scm (python-requests-toolbelt): Update to 0.6.0.
2016-02-25 21:05:37 +02:00
Efraim Flashner 74a066f9a0 gnu: python-requests: Update to 2.9.1.
* gnu/packages/python.scm (python-requests): Update to 2.9.1.
2016-02-25 21:05:37 +02:00
Efraim Flashner 40981b5c18 gnu: python-wheel: Update to 0.29.0.
* gnu/packages/python.scm (python-wheel): Update to 0.29.0.
2016-02-25 21:05:37 +02:00
Christopher Allan Webber a8f20f63dc gnu: Add python-pastescript.
* gnu/packages/python.scm (python-pastescript, python2-pastescript):
  New variables.
2016-02-25 11:01:56 -08:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste.
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
2016-02-25 11:01:45 -08:00
Mark H Weaver e62b5c6903 Merge branch 'media-updates' 2016-02-25 13:50:19 -05:00
Ludovic Courtès 736f9ffce2 gnu: Add missing import in bioinformatics.scm.
This is a followup to 1baee94.

* gnu/packages/bioinformatics.scm: Add missing import.
2016-02-25 12:48:08 +01:00
Nils Gillmann a65e2a02fc gnu: Add kyotocabinet.
* gnu/packages/databases.scm (kyotocabinet): New variable.
2016-02-25 11:56:00 +01:00
Ricardo Wurmus 1baee943ca gnu: Add libBigWig.
* gnu/packages/bioinformatics.scm (libbigwig): New variable.
2016-02-25 11:43:44 +01:00
Jan Nieuwenhuizen 1644f0cd87 gnu: guile-json: Update to 0.5.0.
* gnu/packages/guile.scm (guile-json): Update to 0.5.0.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-02-25 09:19:30 +01:00
Ricardo Wurmus b16043a361 gnu: ardour: Update to 4.7.
* gnu/packages/audio.scm (ardour): Update to 4.7.
2016-02-25 09:17:35 +01:00
宋文武 f072e9adf5 gnu: xdg-utils: Propagate xprop and xset.
Fixes <http://bugs.gnu.org/22755>.

* gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
2016-02-25 08:54:42 +08:00
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739].
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
2016-02-24 16:32:09 -05:00
Leo Famulari 78d80c5c6a gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787].
* gnu/packages/ssh.scm (libssh2): Update to 1.7.0.
  (libssh2-1.4): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4.

Modified-By: Mark H Weaver <mhw@netris.org>
2016-02-24 16:32:08 -05:00
Mark H Weaver bf6996c9cf gnu: xf86-video-intel: Update to 2.99.917-1-d167280.
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-1-d167280.
2016-02-24 13:56:57 -05:00
Efraim Flashner a49332a0c0 gnu: gdb: Update to 7.11.
* gnu/packages/gdb.scm (gdb): Update to 7.11.
2016-02-24 20:52:12 +02:00
Efraim Flashner c73210d7a9 gnu: kde-frameworks: Update to 5.19.0.
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0.
(extra-cmake-modules): Update to 5.19.0.
2016-02-24 20:25:25 +02:00
Andy Wingo 79fd74facd gnu: services: Start X with -configdir.
* gnu/services/xorg.scm (%default-xorg-modules): New public variable.
(xorg-configuration-directory): New function.
(xorg-start-command): Add #:modules keyword argument, defaulting to
%default-xorg-modules.  Build an xorg.conf.d directory from those
modules, and pass it to X via the -configdir parameter.
2016-02-24 11:49:57 -05:00
Andy Wingo d0a6437f7d gnu: libxaw: Update to 1.0.13.
* gnu/packages/xorg.scm (libxaw): Update to 1.0.13.
2016-02-24 11:49:57 -05:00
Andy Wingo ea9763dae0 gnu: libxt: Update to 1.1.5.
* gnu/packages/xorg.scm (libxt): Update to 1.1.5.
2016-02-24 11:49:57 -05:00
Andy Wingo f1aeae762d gnu: libx11: Update to 1.6.3.
* gnu/packages/xorg.scm (libx11): Update to 1.6.3.
2016-02-24 11:49:57 -05:00
Andy Wingo 0eae6b2d91 gnu: xorg-server: Update to 1.18.1.
* gnu/packages/xorg.scm (xorg-server): Update to 1.18.1.
2016-02-24 11:49:57 -05:00
Andy Wingo 7606baa8f9 gnu: libxxf86vm: Update to 1.1.4.
* gnu/packages/xorg.scm (libxxf86vm): Update to 1.1.4.
2016-02-24 11:49:57 -05:00
Andy Wingo 9a5f739ef8 gnu: libxvmc: Update to 1.0.9.
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.9.
2016-02-24 11:49:57 -05:00
Andy Wingo 61f29af1db gnu: libxrandr: Update to 1.5.0.
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.0.
2016-02-24 11:49:57 -05:00
Andy Wingo d51b8529e6 gnu: libxi: Update to 1.7.6.
* gnu/packages/xorg.scm (libxi): Update to 1.7.6.
2016-02-24 11:49:57 -05:00
Andy Wingo 10d85db449 gnu: xproto: Update to 7.0.28.
* gnu/packages/xorg.scm (xproto): Update to 7.0.28.
2016-02-24 11:49:57 -05:00
Andy Wingo 6fad350498 gnu: libxrender: Update to 0.9.9.
* gnu/packages/xorg.scm (libxrender): Update to 0.9.9.
2016-02-24 11:49:57 -05:00
Andy Wingo 42ca6c8528 gnu: libxp: Update to 1.0.3.
* gnu/packages/xorg.scm (libxp): Update to 1.0.3.
2016-02-24 11:49:57 -05:00
Andy Wingo 97b6f9632e gnu: xvinfo: Update to 1.1.3.
* gnu/packages/xorg.scm (xvinfo): Update to 1.1.3.
2016-02-24 11:49:57 -05:00
Andy Wingo 625f4cae0a gnu: xmodmap: Update to 1.0.9.
* gnu/packages/xorg.scm (xmodmap): Update to 1.0.9.
2016-02-24 11:49:57 -05:00
Andy Wingo 85c64cb200 gnu: xlsatoms: Update to 1.1.2.
* gnu/packages/xorg.scm (xlsatoms): Update to 1.1.2.
2016-02-24 11:49:57 -05:00
Andy Wingo 379e1d875b gnu: xkeyboard-config: Update to 2.17.
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.17.
2016-02-24 11:49:57 -05:00
Andy Wingo ed7abe52e0 gnu: xkbevd: Update to 1.1.4.
* gnu/packages/xorg.scm (xkbevd): Update to 1.1.4.
2016-02-24 11:49:57 -05:00
Andy Wingo ab2d710cc2 gnu: xinput: Update to 1.6.2.
* gnu/packages/xorg.scm (xinput): Update to 1.6.2.
2016-02-24 11:49:57 -05:00
Andy Wingo 2e5a0b7850 gnu: xhost: Update to 1.0.7.
* gnu/packages/xorg.scm (xhost): Update to 1.0.7.
2016-02-24 11:49:57 -05:00
Andy Wingo 033a1ba373 gnu: xgamma: Update to 1.0.6.
* gnu/packages/xorg.scm (xgamma): Update to 1.0.6.
2016-02-24 11:49:57 -05:00
Andy Wingo 9177dbeb5f gnu: xf86-video-voodoo: Fix build.
* gnu/packages/xorg.scm (xf86-video-voodoo): Add patch from upstream git
  to fix the build.
2016-02-24 11:49:57 -05:00
Andy Wingo 2ae7a55062 gnu: xf86-video-vmware: Update to 13.1.0.
* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0.
  [source]: Remove patch.
2016-02-24 11:49:57 -05:00
Andy Wingo 937c13f220 gnu: xf86-video-vesa: Update to 2.3.4.
* gnu/packages/xorg.scm (xf86-video-vesa): Update to 2.3.4.
2016-02-24 11:49:57 -05:00
Andy Wingo bcd4a74039 gnu: xf86-video-trident: Update to 1.3.7.
* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7.
  [source]: Remove patch.
2016-02-24 11:49:57 -05:00
Andy Wingo 816decebf2 gnu: xf86-video-tdfx: Update to 1.4.6.
* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6.
  [source]: Remove patch.
2016-02-24 11:49:57 -05:00
Andy Wingo 5f59f5103a gnu: xf86-video-sis: Update to 0.10.8.
* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch,
  gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8.
  [source]: Remove patches.
2016-02-24 11:49:57 -05:00
Andy Wingo fc1172f787 gnu: xf86-video-siliconmotion: Update to 1.7.8.
* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch:
  Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8.
  [source]: Remove patch.
2016-02-24 11:49:57 -05:00
Andy Wingo bfc0d8395e gnu: xf86-video-savage: Update to 2.3.8.
* gnu/packages/xorg.scm (xf86-video-savage): Update to 2.3.8.
2016-02-24 11:49:57 -05:00
Andy Wingo bfe27469b4 gnu: xf86-video-r128: Update to 6.10.1.
* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1.
  [source]: Remove patch.
2016-02-24 11:49:57 -05:00
Andy Wingo 9f9b89bcf2 gnu: xf86-video-nouveau: Update to 1.0.12.
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.12.
2016-02-24 11:49:57 -05:00
Andy Wingo bd714f8509 gnu: xf86-video-neomagic: Update to 1.2.9.
* gnu/packages/xorg.scm (xf86-video-neomagic): Update to 1.2.9.
2016-02-24 11:49:57 -05:00
Andy Wingo ea192db119 gnu: xf86-video-mga: Update to 1.6.4.
* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4.
  [source]: Remove patch.
2016-02-24 11:49:57 -05:00
Andy Wingo 2a26eb96d3 gnu: xf86-video-mach64: Update to 6.9.5.
* gnu/packages/xorg.scm (xf86-video-mach64): Update to 6.9.5.
2016-02-24 11:49:57 -05:00
Andy Wingo 6cc328b43b gnu: xf86-video-intel: Update to git snapshot e41040f.
* gnu/packages/xorg.scm (xf86-video-intel): Update to git snapshot
  e41040f.  Upstream isn't making releases.

Modified-By: Mark H Weaver <mhw@netris.org>
2016-02-24 11:49:57 -05:00
Andy Wingo 315a0ecc0d gnu: xf86-video-geode: Update to 2.11.18.
* gnu/packages/xorg.scm (xf86-video-geode): Update to 2.11.18.
2016-02-24 11:49:57 -05:00
Andy Wingo 6bc2fa7c5e gnu: xf86-video-cirrus: Update to 1.5.3.
* gnu/packages/xorg.scm (xf86-video-cirrus): Update to 1.5.3.
2016-02-24 11:49:57 -05:00
Andy Wingo 83696ce1c2 gnu: xf86-video-ati: Update to 7.6.1.
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.6.1.
2016-02-24 11:49:57 -05:00
Andy Wingo 746e671007 gnu: xf86-input-void: Update to 1.4.1.
* gnu/packages/xorg.scm (xf86-input-void): Update to 1.4.1.
2016-02-24 11:49:57 -05:00
Andy Wingo eec4e906ce gnu: xf86-input-synaptics: Update to 1.8.3.
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.8.3.
2016-02-24 11:49:57 -05:00
Andy Wingo 5be72cd395 gnu: xf86-input-keyboard: Update to 1.8.1.
* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.8.1.
2016-02-24 11:49:57 -05:00
Andy Wingo 049a02128d gnu: xf86-input-libinput: Update to 0.16.0.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.16.0.
2016-02-24 11:49:57 -05:00
Andy Wingo d44d724966 gnu: xf86-input-evdev: Update to 2.10.1.
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.1.  Add mtdev
  input.
2016-02-24 11:49:57 -05:00
Andy Wingo 9502179d62 gnu: xev: Update to 1.2.2.
* gnu/packages/xorg.scm (xev): Update to 1.2.2.
2016-02-24 11:49:57 -05:00
Andy Wingo 380af498e3 gnu: xdriinfo: Update to 1.0.5.
* gnu/packages/xorg.scm (xdriinfo): Update to 1.0.5.
2016-02-24 11:49:57 -05:00
Andy Wingo c6be2454c1 gnu: xdpyinfo: Update to 1.3.2.
* gnu/packages/xorg.scm (xdpyinfo): Update to 1.3.2.
2016-02-24 11:49:57 -05:00
Andy Wingo b1b3ab34b4 gnu: xcmsdb: Update to 1.0.5.
* gnu/packages/xorg.scm (xcmsdb): Update to 1.0.5.
2016-02-24 11:49:57 -05:00
Andy Wingo 9fab5cc9b5 gnu: x11perf: Update to 1.6.0.
* gnu/packages/xorg.scm (x11perf): Update to 1.6.0.
2016-02-24 11:49:57 -05:00
Andy Wingo 10814b66cc gnu: smproxy: Update to 1.0.6.
* gnu/packages/xorg.scm (smproxy): Update to 1.0.6.
2016-02-24 11:49:57 -05:00
Andy Wingo 350843a5be gnu: setxkbmap: Update to 1.3.1.
* gnu/packages/xorg.scm (setxkbmap): Update to 1.3.1.
2016-02-24 11:49:57 -05:00
Andy Wingo 849f01df4a gnu: sessreg: Update to 1.1.0.
* gnu/packages/xorg.scm (sessreg): Update to 1.1.0.
2016-02-24 11:49:57 -05:00
Andy Wingo 2c26245b39 gnu: randrproto: Update to 1.5.0.
* gnu/packages/xorg.scm (randrproto): Update to 1.5.0.
2016-02-24 11:49:57 -05:00
Andy Wingo 042777cee5 gnu: mkfontscale: Update to 1.1.2.
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.2.
2016-02-24 11:49:57 -05:00
Andy Wingo c8012b798e gnu: libxkbfile: Update to 1.0.9.
* gnu/packages/xorg.scm (libxkbfile): Update to 1.0.9.
2016-02-24 11:49:57 -05:00
Andy Wingo ccca0efe13 gnu: libxdmcp: Update to 1.1.2.
* gnu/packages/xorg.scm (libxdmcp): Update to 1.1.2.
2016-02-24 11:49:57 -05:00
Andy Wingo 34a9b4e5a1 gnu: libfs: Update to 1.0.7.
* gnu/packages/xorg.scm (libfs): Update to 1.0.7.
2016-02-24 11:49:57 -05:00
Andy Wingo 203593ddde gnu: libfontenc: Update to 1.1.3.
* gnu/packages/xorg.scm (libfontenc): Update to 1.1.3.
2016-02-24 11:49:57 -05:00
Andy Wingo f98e2a3ff2 gnu: libxshmfence: Update to 1.2.
* gnu/packages/xorg.scm (libxshmfence): Update to 1.2.
2016-02-24 11:49:57 -05:00
Andy Wingo d6c6dde8f5 gnu: kbproto: Update to 1.0.7.
* gnu/packages/xorg.scm (kbproto): Update to 1.0.7.
2016-02-24 11:49:57 -05:00
Andy Wingo 247ef1f52d gnu: iceauth: Update to 1.0.7.
* gnu/packages/xorg.scm (iceauth): Update to 1.0.7.
2016-02-24 11:49:57 -05:00
Andy Wingo 201bd16530 gnu: font-util: Update to 1.3.1.
* gnu/packages/xorg.scm (font-util): Update to 1.3.1.
2016-02-24 11:49:57 -05:00
Andy Wingo 235d701972 gnu: bdftopcf: Update to 1.0.5.
* gnu/packages/xorg.scm (bdftopcf): Update to 1.0.5.
2016-02-24 11:49:57 -05:00
Andy Wingo 521b1d888b gnu: libinput: Update to 1.1.902.
* gnu/packages/freedesktop.scm (libinput): Update to 1.1.902.
2016-02-24 11:49:57 -05:00
Andy Wingo 34efce4ff4 gnu: libwacom: Propagate glib input.
* gnu/packages/xdisorg.scm (libwacom): Propagate glib input.
2016-02-24 11:49:57 -05:00
Andy Wingo ffc959939f gnu: mesa: Update to 11.0.9.
* gnu/packages/gl.scm (mesa): Update to 11.0.9.
2016-02-24 11:49:57 -05:00
Efraim Flashner 0e47b4e769 gnu: libvpx: Use 'modify-phases'.
* gnu/packages/video.scm (libvpx)[arguments]: Use 'modify-phases'.
2016-02-24 11:49:57 -05:00
Efraim Flashner fb197c0da4 gnu: libvpx: Update to 1.5.0.
* gnu/packages/video.scm (libvpx): Update to 1.5.0.
2016-02-24 11:49:57 -05:00
Efraim Flashner cda6aaf079 gnu: gst-plugins-base: Use 'modify-phases'.
* gnu/packages/gstreamer.scm (gst-plugins-base)[arguments]: Use
'modify-phases'.
2016-02-24 11:49:57 -05:00
宋文武 db12dac05c gnu: Add gst-plugins-bad.
* gnu/packages/gstreamer.scm (gst-plugins-bad): New variable.
2016-02-24 11:49:57 -05:00
宋文武 3673dace40 gnu: gst-libav: Update to 1.6.3.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.6.3.
2016-02-24 11:49:57 -05:00
宋文武 30d34785b8 gnu: gst-plugins-ugly: Update to 1.6.3.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.6.3.
2016-02-24 11:49:57 -05:00
宋文武 48caecb7f7 gnu: gst-plugins-good: Update to 1.6.3.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.6.3.
2016-02-24 11:49:57 -05:00
宋文武 8cf39f7f33 gnu: gst-plugins-base: Update to 1.6.3.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.6.3.
2016-02-24 11:49:57 -05:00
宋文武 120469d2fc gnu: gstreamer: Update to 1.6.3.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.6.3.
2016-02-24 11:49:57 -05:00
Efraim Flashner 9dd61217c3 gnu: pulseaudio: Update to 8.0.
* gnu/packages/pulseaudio.scm (pulseaudio): Update to 8.0.
2016-02-24 11:49:57 -05:00
Ricardo Wurmus 6d415db23d gnu: r-topgo: Add missing input.
* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
  "r-graph".
2016-02-24 17:36:55 +01:00
Ricardo Wurmus d1dbde6ac1 gnu: Add r-graph.
* gnu/packages/bioinformatics.scm (r-graph): New variable.
2016-02-24 17:36:55 +01:00
Ricardo Wurmus e761beb9a9 gnu: Add r-org-mm-eg-db.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
2016-02-24 17:26:39 +01:00
Ricardo Wurmus 16c53a1e26 gnu: Add r-org-dm-eg-db.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
2016-02-24 17:26:39 +01:00
Ricardo Wurmus fefedf98cb gnu: Add r-org-ce-eg-db.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
2016-02-24 17:26:39 +01:00
Ricardo Wurmus 486da49143 gnu: Add r-org-hs-eg-db.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2016-02-24 17:26:39 +01:00
Alex Kost 6caa4dfa37 Do not check package freshness during upgrade.
Fixes <http://bugs.gnu.org/22740>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove.
* guix/scripts/package.scm (options->installable): Adjust accordingly.
* emacs/guix-main.scm (package->manifest-entry*): Likewise.
2016-02-24 18:24:16 +03:00
Ludovic Courtès da35acf91d gnu: lsh: lshd now supports X11 forwarding.
Reported by myglc2 <myglc2@gmail.com>.

* gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH.
[arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
2016-02-24 13:11:50 +01:00
Ludovic Courtès 03b93ed70e gnu: lsh: Use 'modify-phases'.
* gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of
'alist-cons-before'.
2016-02-24 13:11:50 +01:00
Andy Wingo ea84bd88da gnu: services: Install policies for polkit service.
* gnu/services/desktop.scm (polkit-etc-files): Add the polkit package
  itself to the list of packages to scan for .policy files.  This add
  support for pkexec.
2016-02-24 10:16:54 +01:00
Efraim Flashner ebde7c7a9b mplayer: Use 'modify-phases'.
* gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'.
[source]: Use https.
[home-page]: Use https.
2016-02-24 10:33:05 +02:00
Efraim Flashner 778a6a8bf0 gnu: mplayer: Add codecs.
* gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2,
  libvdpau, libx264, opus.
2016-02-24 09:43:51 +02:00
Efraim Flashner dec3e015eb gnu: dropbear: Update to 2015.71.
* gnu/packages/ssh.scm (dropbear): Update to 2015.71.
2016-02-24 09:18:14 +02:00
David Thompson dd90ed892a gnu: guile-next: Set correct native search paths.
* gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the
  load paths.
2016-02-23 19:39:56 -05:00
Ludovic Courtès f2d8faff04 services: herd: Add missing newlines in error messages.
* gnu/services/herd.scm (report-action-error): Add missing newlines in
messages.
2016-02-23 13:03:23 +01:00
Andreas Enge 5a179844e7 gnu: Add xfce4-xkb-plugin.
* gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable.
  (xfce)[propagated-inputs]: Add it.
2016-02-23 11:53:03 +01:00
Leo Famulari 8758efe0b0 gnu: telepathy-logger: Disable parallel tests.
* gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel
tests.
2016-02-23 01:53:47 -05:00
Roel Janssen c1fc7a67e4 gnu: Add rdmd.
* gnu/packages/ldc.scm (rdmd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-23 01:27:19 -05:00
Leo Famulari e9f68a647d gnu: modem-manager: Use HTTPS URL.
* gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
2016-02-23 00:15:05 -05:00
Leo Famulari fae58fe1d1 gnu: mpd: Update to 0.19.12.
* gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
2016-02-22 20:16:25 -05:00
Leo Famulari a4c7c57c2c gnu: ncmpcpp: Udate to 0.7.3.
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3.
[inputs]: Add icu4c.
2016-02-22 20:16:25 -05:00
Leo Famulari 9913c78a09 gnu: ncmpcpp: Use 'modify-phases'.
* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
2016-02-22 20:16:25 -05:00
Christopher Allan Webber 944d2b17b5 vm: Only pass "-enable-kvm" to qemu if /dev/kvm is present.
Fixes <http://bugs.gnu.org/22633>.

* gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu
  if "/dev/kvm" is present.
* gnu/system/vm.scm (common-kvm-options): Same as above.
2016-02-22 13:28:58 -08:00
Ludovic Courtès 8b16a5e199 gnu: pkg-config: Add non-HTTPS alternate URL.
* gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
2016-02-22 22:11:37 +01:00
Andreas Enge 3297deedd1 gnu: Remove python2-pyqt-4.
* gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4,
  which does not receive security updates any more.
2016-02-22 21:33:29 +01:00
Andreas Enge dbbb45dd73 gnu: Remove KDE 4.
* gnu/packages/kde.scm (qjson): Move from here...
* gnu/packages/qt.scm (qjson): ...to here.
* gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde).
* gnu/packages/kde.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister it.
* gnu/packages/rdf.scm (soprano): Delete variable.

KDE 4 relies on Qt 4, which does not receive security updates any more.
2016-02-22 21:30:56 +01:00
Efraim Flashner 5ad87e5bb5 gnu: python-patsy: Define 'python2-variant'.
* gnu/packages/statistics.scm (python-patsy)[properties]: New field.
(python2-patsy): Use 'strip-python2-variant'.
2016-02-22 21:59:02 +02:00
Efraim Flashner f4cd2ceabd gnu: python-patsy: Update to 0.4.1.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
2016-02-22 21:59:02 +02:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197.
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
2016-02-22 10:26:22 -05:00
Rene Saavedra b784b1a9ea gnu: Add gnome-screenshot.
* gnu/packages/gnome.scm (gnome-screenshot): New variable.
2016-02-22 19:57:35 +08:00
Roel Janssen 8b15f42c73 gnu: libotf: Use mirror:// URL.
* gnu/packages/fontutils.scm (libotf): Use mirror://savannah URL.
2016-02-22 19:57:35 +08:00
Efraim Flashner 066651d412 gnu: c-ares: Update to 1.11.0.
* gnu/packages/adns.scm (c-ares): Update to 1.11.0.
2016-02-22 10:43:17 +02:00
Leo Famulari 1034331a11 gnu: parallel: Update to 20160122.
* gnu/packages/parallel.scm (parallel): Update to 20160122.
2016-02-22 02:31:38 -05:00
Mark H Weaver fe5f687284 gnu: giflib: Update to 5.1.2.
* gnu/packages/image.scm (giflib): Update to 5.1.2.
2016-02-22 02:28:51 -05:00
Leo Famulari 50a7963aeb gnu: python-acme: Generate and install documentation.
* gnu/packages/tls.scm (acme)[arguments]: Add 'docs' phase.
[native-inputs]: Add python-sphinx, python-sphinxcontrib-programoutput,
python-sphinx-rtd-theme, python-setuptools, texinfo.
2016-02-22 00:40:25 -05:00
Leo Famulari f9263d9a90 gnu: letsencrypt: Generate and install documentation.
* gnu/packages/tls.scm (letsencrypt)[arguments]: Add 'docs' phase.
[native-inputs]: Add python2-sphinx, python2-sphinx-rtd-theme,
python2-sphinx-repoze-autointerface,
python2-sphinxcontrib-programoutput, texinfo.
2016-02-22 00:40:25 -05:00
Leo Famulari 548d716539 gnu: Add python-sphinx-repoze-autointerface.
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): New variables.
2016-02-22 00:40:25 -05:00
Leo Famulari 3276517cdc gnu: Add python-sphinxcontrib-programoutput.
* gnu/packages/python.scm (python-sphinxcontrib-programoutput,
python2-sphinxcontrib-programoutput): New variables.
2016-02-22 00:40:25 -05:00
Christopher Allan Webber 2de98febb3 gnu: python-apipkg: Remove unzip dependency.
Unzip was never used for this package.

* gnu/packages/python.scm (python-apipkg): Remove unzip dependency.
2016-02-21 19:02:26 -08:00
Christopher Allan Webber 0c3b90d478 gnu: Add python-editor.
* gnu/packages/python.scm (python-editor, python2-editor): New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 97e32948ea gnu: Add python-translitcodec.
* gnu/packages/python.scm (python-translitcodec, python2-translitcodec):
  New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 22df6419f8 gnu: Add python-celery.
* gnu/packages/python.scm (python-celery, python2-celery): New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber b6f0b9fb68 gnu: Add python-billiard.
* gnu/packages/python.scm (python-billiard, python2-billiard):
  New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 7d38730507 gnu: Add python-kombu.
* gnu/packages/python.scm (python-kombu, python2-kombu): New variables.
2016-02-21 19:01:16 -08:00
Christopher Allan Webber 8dfceab779 gnu: Add python-amqp.
* gnu/packages/python.scm (python-amqp, python2-amqp): New variables.
2016-02-21 19:01:13 -08:00
Christopher Allan Webber 4cb122cd8d gnu: Add python-anyjson.
* gnu/packages/python.scm (python-anyjson, python2-anyjson): New variables.
2016-02-21 19:00:32 -08:00
Christopher Allan Webber aa6313d699 gnu: Add python-webtest.
* gnu/packages/python.scm (python-webtest, python2-webtest):
  New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber 1cf536521d gnu: Add python-pyquery.
* gnu/packages/python.scm (python-pyquery, python2-pyquery): New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber bb7518b1e8 gnu: Add python-pastedeploy.
* gnu/packages/python.scm (python-pastedeploy, python2-pastedeploy):
  New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber 778a284be5 gnu: Add python-wsgiproxy2.
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2):
  New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber ae00a41feb gnu: Add python-waitress.
* gnu/packages/python.scm (python-waitress, python2-waitress): New variables.
2016-02-21 18:59:39 -08:00
Christopher Allan Webber b32a1e47a9 gnu: Add python-beautifulsoup4.
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
  New variables.
2016-02-21 18:59:34 -08:00
Christopher Allan Webber 8fa58fc9a1 gnu: Add python-pytest-xdist.
* gnu/packages/python.scm (python-pytest-xdist, python2-pytest-xdist):
  New variables.
2016-02-21 18:59:30 -08:00
Christopher Allan Webber 16c84f9031 gnu: Add python2-execnet.
* gnu/packages/python.scm (python2-execnet): New variable.
2016-02-21 18:59:30 -08:00
Christopher Allan Webber e08739c3c6 gnu: Add python2-apipkg.
* gnu/packages/python.scm (python2-apipkg): New variable.
2016-02-21 18:59:30 -08:00
Christopher Allan Webber af5a460222 gnu: Add python-alembic.
* gnu/packages/python.scm (python-alembic, python2-alembic): New variables.
2016-02-21 18:59:29 -08:00
Ludovic Courtès 95001d4b46 download: Add 'url-fetch/tarbomb'.
Suggested by Federico Beffa.
Fixes <http://bugs.gnu.org/22676>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/engineering.scm (broken-tarball-fetch): Remove.
(fastcap)[source](method): Use URL-FETCH/TARBOMB instead.
* gnu/packages/scheme.scm (broken-tarball-fetch): Remove.
(scmutils)[source](method): Use URL-FETCH/TARBOMB instead.
* guix/download.scm (url-fetch/tarbomb): New procedure, renamed from
'broken-tarball-fetch'.
2016-02-22 00:36:24 +01:00
Andy Wingo d5df6fc755 gnu: icu4c: Fetch from sourceforge.
* gnu/packages/icu4c.scm (icu4c): Download via sourceforge mirrors.  The
  previous URL,
  http://download.icu-project.org/files/icu4c/55.1/icu4c-55_1-src.tgz,
  redirects to sourceforge, which then fails because that redirects to
  https and as the original URL didn't start with HTTPS, gnutls wasn't
  included in the downloader.
2016-02-21 21:21:09 +01:00
Andy Wingo 5cc3096c73 Update all sources from freedesktop.org to use https
* gnu/packages/xorg.scm:
* gnu/packages/xdisorg.scm:
* gnu/packages/video.scm:
* gnu/packages/tls.scm:
* gnu/packages/python.scm:
* gnu/packages/pulseaudio.scm:
* gnu/packages/polkit.scm:
* gnu/packages/pdf.scm:
* gnu/packages/libcanberra.scm:
* gnu/packages/gtk.scm:
* gnu/packages/gstreamer.scm:
* gnu/packages/gnome.scm:
* gnu/packages/glib.scm:
* gnu/packages/ghostscript.scm:
* gnu/packages/freedesktop.scm:
* gnu/packages/fontutils.scm: Update all sources hosted on freedesktop
  to fetch tarballs via https.  freedesktop.org appears to have updated
  recently to redirect all http to https.  As an exception, we leave
  pkg-config like it is, because pkg-config is needed to build gnutls,
  and without gnutls we can't download https URLs.
2016-02-21 21:11:49 +01:00
Efraim Flashner 466a7d706d gnu: libx264: Update to 20160220-2245.
* gnu/packages/video.scm (libx264): Update to 20160220-2245.
2016-02-21 16:16:54 +02:00
Efraim Flashner 62fe2d4752 gnu: xvid: Use 'modify-phases'.
* gnu/packages/video.scm (xvid)[arguments]: Use 'modify-phases'.
2016-02-21 16:16:54 +02:00
Efraim Flashner e05035c70d gnu: xvid: Update to 1.3.4.
* gnu/packages/video.scm (xvid): Update to 1.3.4.
2016-02-21 16:16:54 +02:00
Ludovic Courtès 5c7dd5ac3a linux-modules: Use normalized module names for 'modprobe.blacklist'.
* gnu/build/linux-modules.scm (normalize-module-name): New procedure.
(file-name->module-name): Use it.
(module-black-list): Expound docstring.
2016-02-21 13:04:10 +01:00
Mark H Weaver 57a41bfb3c gnu: linux-libre: Update to 4.4.2.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.2.
2016-02-21 03:05:24 -05:00
Leo Famulari 9eb05bc381 gnu: python-enum34: Remove python-setuptools from inputs.
* gnu/packages/python.scm (python-enum34)[inputs]: Remove
python-setuptools.
2016-02-21 02:46:23 -05:00
Leo Famulari 68f1cdecf1 gnu: Don't use python-enum34 when building with python-3.4.
* gnu/packages/docker.scm (docker-compose)[inputs]: Remove python-enum34.
* gnu/packages/python.scm (python-parse-type)[inputs]: Likewise.
(behave)[inputs]: Likewise.
(python-cryptography)[propagated-inputs]: Likewise.
(python2-cryptography)[propagated-inputs]: Add python2-enum34.
2016-02-21 02:46:23 -05:00
Leo Famulari 820acd1bc3 gnu: Add python2-enum34.
* gnu/packages/python.scm (python2-enum34): New variable.
2016-02-21 02:46:23 -05:00
Leo Famulari d39ae1e5c6 gnu: python-enum34: Update to 1.1.0.
* gnu/packages/python.scm (python-enum34): Update to 1.1.0.
[source]: Use pypi-uri.
2016-02-21 02:46:23 -05:00
Leo Famulari 7bac09f45a gnu: dvtm: Update to 0.15.
* gnu/packages/dvtm.scm (dvtm): Update to 0.15.
2016-02-21 02:04:59 -05:00
Leo Famulari b860bbd9ee gnu: abduco: Update to 0.5.
* gnu/packages/abduco.scm (abduco): Update to 0.5.
2016-02-21 02:04:10 -05:00
Mark H Weaver 065932966f Revert "gnu: coreutils: Update URI for tail-inotify-race.patch."
This reverts commit 1a51cbc825.
2016-02-20 19:58:19 -05:00
Mark H Weaver 1f7309a6d1 gnu: dmd: Update URI of dmd-user-group.patch.
* gnu/packages/admin.scm (dmd)[source]: Update URI of patch.
2016-02-20 18:41:34 -05:00
Mark H Weaver 1a51cbc825 gnu: coreutils: Update URI for tail-inotify-race.patch.
* gnu/packages/base.scm (coreutils)[source]: Update URI of patch.
2016-02-20 18:41:34 -05:00
Ricardo Wurmus eeabe5a186 gnu: wine: Update to 1.9.4.
* gnu/packages/wine.scm (wine): Update to 1.9.4.
[origin]: Remove snippet.
[arguments]: Set SHELL with make-flags.
2016-02-20 22:38:33 +01:00
宋文武 56f5f921b4 gnu: nix: Update to 1.11.2.
* gnu/packages/package-management.scm (nix): Update to 1.11.2.
2016-02-20 18:22:26 +08:00
Roel Janssen 6ef0ec7600 gnu: Add libotf.
* gnu/packages/fontutils.scm (libotf): New variable.
2016-02-20 08:41:51 +08:00
Leo Famulari 4e58a402ff gnu: cpio: Add fix for CVE-2016-2037.
* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio)[source]: Add patch.
2016-02-19 18:04:15 -05:00
Leo Famulari 6399941555 gnu: rxvt-unicode: Update source URL.
* gnu/packages/xdisorg.scm (rxvt-unicode)[source]: Update URL.
2016-02-19 01:49:30 -05:00
Mark H Weaver 3729ff4183 gnu: glibc: Add fix for CVE-2015-7547.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Add patch.
2016-02-19 00:42:10 -05:00
Christopher Baines 1c7f1fb133 gnu: Add perl-shell-command.
* gnu/packages/perl.scm (perl-shell-command): New variable.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-02-18 21:16:25 +01:00
Alex Sassmannshausen 3c98acb79b gnu: guile-config: Update to 0.1.1.
* gnu/packages/guile.scm (guile-config): Update to 0.1.1.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-02-18 20:40:12 +01:00
Efraim Flashner c8732e192e gnu: gccgo: Update to 4.9.
* gnu/packages/gcc.scm (gccgo): Update to 4.9.
2016-02-18 20:52:02 +02:00
Efraim Flashner 2a817081e2 gnu: aria2: Update to 1.20.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.20.0.
2016-02-18 19:47:49 +02:00
Efraim Flashner 723a6910ca gnu: glpk: Update to 4.58.
* gnu/packages/maths.scm (glpk): Update to 4.58.
2016-02-18 15:35:28 +02:00
Efraim Flashner f6b1a8f7be gnu: ykclient: Update to 2.15.
* gnu/packages/yubico.scm (ykclient): Update to 2.15.
2016-02-18 11:47:19 +02:00
Efraim Flashner 58c5fb76f5 gnu: libyubikey: Update to 1.13.
* gnu/packages/yubico.scm (libyubikey): Update to 1.13.
2016-02-18 11:47:19 +02:00
Efraim Flashner e095be68dd gnu: yasm: Update to 1.3.0.
* gnu/packages/yasm.scm (yasm): Update to 1.3.0.
2016-02-18 11:47:19 +02:00
宋文武 83f64925ae gnu: retroarch: Update to 1.3.1.
* gnu/packages/games.scm (retroarch): Update to 1.3.1.
2016-02-18 17:32:51 +08:00
Nils Gillmann e11d14fe55 gnu: Add emacs-popup.
* gnu/packages/emacs.scm (emacs-popup): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-02-18 11:59:03 +03:00
Rene Saavedra fdba447c62 gnu: Add gnome-backgrounds.
* gnu/packages/gnome.scm (gnome-backgrounds): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-02-18 11:59:03 +03:00
Alex Kost 5dccaffe64 system: Add iproute to '%base-packages'.
* gnu/system.scm (%base-packages): Add iproute.
2016-02-18 11:59:03 +03:00
Efraim Flashner 10baeb35de gnu: coreutils: Update to 8.25.
* gnu/packages/base.scm (coreutils): Update to 8.25.
[source]: Remove patch.
2016-02-18 07:48:10 +02:00
Efraim Flashner 5d9356f0fe gnu: binutils: Update to 2.26.
* gnu/packages/base.scm (binutils): Update to 2.26.
2016-02-18 07:48:10 +02:00
Leo Famulari 42e92e069a gnu: letsencrypt and python-acme: Update to 0.4.0.
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.4.0.
(python-acme, python2-acme): Update to 0.4.0.
2016-02-17 22:43:08 -05:00
David Thompson 50aaec25ca gnu: Add python-mako.
* gnu/packages/python.scm (python-mako, python2-mako): New variables.
2016-02-17 21:21:47 -05:00
David Thompson 578a4c0273 gnu: libdrm: Update to 2.4.67.
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.67.
2016-02-17 20:18:33 -05:00
David Thompson 419016da81 gnu: linux-libre-headers: Update to 4.1.18.
* gnu/packages/linux.scm (linux-libre-headers): Update to 4.1.18.
2016-02-17 12:15:37 -05:00
Efraim Flashner 373dfe64a3 gnu: moe: Update to 1.8.
* gnu/packages/moe.scm (moe): Update to 1.8.
2016-02-17 16:25:46 +02:00
宋文武 972f4e5082 gnu: gnunet: Install NSS module.
* gnu/packages/gnunet.scm (gnunet)[arguments]: Pass '--with-nssdir'.
2016-02-17 20:57:55 +08:00
宋文武 dc05025165 gnu: Add gnome.
* gnu/packages/gnome.scm (gnome): New variable.
2016-02-17 20:57:55 +08:00
Fabian Harfert 7af1ca29f4 gnu: Add mate-menus.
* gnu/packages/mate.scm (mate-menus): New variable.
2016-02-17 13:39:41 +02:00
Fabian Harfert f2c7369abc gnu: Add libmateweather.
* gnu/packages/mate.scm (libmateweather): New variable.
2016-02-17 13:39:41 +02:00
Fabian Harfert 4b48a9fee0 gnu: Add mate-desktop.
* gnu/packages/mate.scm (mate-desktop): New variable.
2016-02-17 13:39:40 +02:00
Fabian Harfert cbfe494dd7 gnu: Add mate-themes.
* gnu/packages/mate.scm (mate-themes): New variable.
2016-02-17 12:14:02 +02:00
Fabian Harfert bb2fe79e6e gnu: Add mate-icon-theme.
* gnu/packages/mate.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/mate.scm (mate-icon-theme): New variable.
2016-02-17 12:14:02 +02:00
Alex Sassmannshausen 44a2bdf8e7 gnu: Add guile-config.
* gnu/packages/guile.scm (guile-config): New variable.
2016-02-16 11:24:08 -08:00
Efraim Flashner 1486d67ee8 gnu: qrencode: Update to 3.4.4.
* gnu/packages/aidc.scm (qrencode): Update to 3.4.4.
2016-02-16 19:28:00 +02:00
Andreas Enge 9bd9486df4 gnu: pari-gp: Build documentation.
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Add texlive-minimal.
  [arguments]: Modify make-flags to build documentation.
2016-02-16 17:11:28 +01:00
Andreas Enge 6b5eb8406c gnu: Add texlive-minimal.
* gnu/packages/texlive.scm (texlive-texmf-minimal, texlive-minimal):
  New variables.
2016-02-16 16:44:36 +01:00
Efraim Flashner b736776255 gnu: hydrogen: Update to 0.9.6.1.
* gnu/packages/music.scm (hydrogen): Update to 0.9.6.1.
[build-system]: Switch to cmake-build-system.
[arguments]: Enable configure and tests, remove custom phases.
[native-inputs]: Remove python-2, scons. Add cppunit.
[inputs]: Add libarchive, lrdf.
2016-02-16 17:24:45 +02:00
Ricardo Wurmus 578b05d99e gnu: htseq: Add PySam to inputs.
* gnu/packages/bioinformatics.scm (htseq)[inputs]: Add "python2-pysam".
2016-02-16 15:32:15 +01:00
Ricardo Wurmus d15d981ea2 gnu: Add StringTie.
* gnu/packages/bioinformatics.scm (stringtie): New variable.
2016-02-16 14:51:10 +01:00
Ricardo Wurmus 469d6589e3 gnu: Add Augeas.
* gnu/packages/augeas.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-02-16 14:41:25 +01:00
Efraim Flashner c5a6e33b56 gnu: gpsbabel: Use 'modify-phases'.
* gnu/packages/gps.scm (gpsbabel)[arguments]: Use 'modify-phases'.
2016-02-16 12:13:01 +02:00
Efraim Flashner 6f1c3b806a gnu: gpsbabel: Update to 1.5.2.
* gnu/packages/gps.scm (gpsbabel): Update to 1.5.2.
[inputs]: Remove qt-4, add qt.
2016-02-16 11:10:45 +02:00
Efraim Flashner d694230abe gnu: librecad: Use 'modify-phases'.
* gnu/packages/engineering.scm (librecad)[arguments]: Use 'modify-phases'.
2016-02-16 09:30:40 +02:00
Efraim Flashner d8a4b93253 gnu: librecad: Update to 2.0.9.
* gnu/packages/engineering.scm (librecad): Update to 2.0.9.
[inputs]: Use qt instead of qt-4.
2016-02-16 08:53:18 +02:00
Leo Famulari d4e21fbbe0 gnu: iftop: Fix license.
* gnu/packages/admin.scm (iftop)[license]: Correct 'gpl3' to 'gpl2+'.
2016-02-15 21:37:07 -05:00
Leo Famulari 6ac2af78e0 gnu: shntool: Fix license.
* gnu/packages/audio.scm (shntool)[license]: Correct 'gpl3+' to 'gpl2+'
and add 'x11'.
2016-02-15 21:36:46 -05:00
Leo Famulari 8763fdf8a5 gnu: pioneers: Fix license.
* gnu/packages/games.scm (pioneers)[license]: Correct 'gpl3+' to 'gpl2+'.
2016-02-15 21:14:18 -05:00
Rodger Fox 7e2e115501 gnu: Add pioneers.
* gnu/packages/games.scm (pioneers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-15 20:12:08 -05:00
Leo Famulari be6f30047e gnu: vdirsyncer: Update to 0.9.0.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.0.
2016-02-15 18:48:36 -05:00
Leo Famulari a9da8fec62 gnu: python-click-log: Update to 0.1.3.
* gnu/packages/python.scm (python-click-log): Update to 0.1.3.
2016-02-15 18:48:36 -05:00
Leo Famulari c834cf82b6 gnu: python-atomicwrites: Update to 0.1.9.
* gnu/packages/python.scm (python-atomicwrites): Update to 0.1.9.
2016-02-15 18:48:36 -05:00
Leo Famulari 97bbc48023 gnu: python-lxml: Update to 3.5.0.
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 3.5.0.
[source]: Use pypi-uri.
2016-02-15 18:48:36 -05:00
Tobias Geerinckx-Rice 85a94d296e gnu: redshift: Update to 1.11.
* gnu/packages/xdisorg.scm (redshift): Update to 1.11.
2016-02-15 23:37:21 +01:00
Christopher Allan Webber a4ba286baf gnu: python-sqlalchemy: Update to 1.0.12.
* gnu/packages/python.scm (python-sqlalchemy): Update to 1.0.12.
2016-02-15 14:02:06 -08:00
Pjotr Prins 552f5c009e gnu: Add slurm.
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
2016-02-15 22:47:47 +01:00
Ben Woodcroft e70f7a2306 gnu: prodigal: Update to 2.6.3.
* gnu/packages/bioinformatics.scm (prodigal): Update to 2.6.3.
2016-02-16 07:18:59 +10:00
Efraim Flashner 7fe8ad7616 gnu: polkit-qt: Build with qt-5.
*gnu/packages/polkit.scm (polkit-qt)[propagated-inputs]: Use qt.
2016-02-15 20:22:28 +02:00
Efraim Flashner d1cba090a8 gnu: bazaar: Update to 2.7.0.
* gnu/packages/version-control.scm (bazaar): Update to 2.7.0.
2016-02-15 19:53:27 +02:00
Ricardo Wurmus 258c0a365e gnu: r-annotationdbi: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.32.3.
2016-02-15 16:11:22 +01:00
Ricardo Wurmus 3d7a157c62 gnu: Add audit.
* gnu/packages/admin.scm (audit): New variable.
2016-02-15 16:06:09 +01:00
Efraim Flashner fdc1b2fd65 gnu: vera: Update to 1.23.
* gnu/packages/dictionaries.scm (vera): Update to 1.23.
2016-02-15 15:49:13 +02:00
Efraim Flashner e0ef3708f7 gnu: nano: Update to 2.5.2.
* gnu/packages/nano.scm (nano): Update to 2.5.2.
2016-02-15 15:49:13 +02:00
Efraim Flashner 4bc0c634b3 gnu: bitcoin-core: Update to 0.11.2.
* gnu/packages/finance.scm (bitcoin-core): Update to 0.11.2.
[native-inputs]: Use python-2 instead of python-wrapper.
2016-02-15 15:46:00 +02:00
Efraim Flashner 87062f75e4 gnu: owncloud-client: Update to 2.1.1.
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.1.1.
2016-02-15 15:46:00 +02:00
Ben Woodcroft cf6edaba74 gnu: vsearch: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0.
[origin]: Adapt to changes in bundling of cityhash.
2016-02-15 22:54:25 +10:00
Ben Woodcroft a64a8c465d gnu: cityhash: Install citycrc.h.
* gnu/packages/textutils.scm (cityhash)[arguments]: Install citycrc.h.
[version]: Use standardised format, increment to 1.1-2.
2016-02-15 22:54:12 +10:00
Efraim Flashner 18caed4475 gnu: grep: Update to 2.23.
* gnu/packages/base.scm (grep): Update to 2.23.
2016-02-15 13:34:34 +02:00
Efraim Flashner ff0c847687 gnu: ed: Use 'modify-phases'.
* gnu/packages/ed.scm (ed)[arguments]: Use 'modify-phases'.
2016-02-15 10:17:46 +02:00
Efraim Flashner 5cd2c1e8c1 gnu: ed: Update to 1.13.
* gnu/packages/ed.scm (ed): Update to 1.13.
2016-02-15 10:17:45 +02:00
Mark H Weaver e86409c566 gnu: graphite2: Update to 1.3.5. Update home-page and source URI.
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.5.
  [source, home-page]: Update to reflect upstream move to github.
2016-02-15 02:51:35 -05:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805].
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
2016-02-15 02:51:35 -05:00
Christopher Allan Webber ea79dbb240 gnu: libgcrypt: Update to 1.6.5 [fixes CVE-2015-7511].
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.5.
2016-02-15 02:51:35 -05:00
Efraim Flashner 10a42aa2e2 gnu: python-2: Enable tests.
* gnu/packages/python.scm (python-2)[source]: Delete failing tests.
[arguments]: Enable tests.
2016-02-15 09:25:30 +02:00
Efraim Flashner e7e7a1eb7c gnu: python-2: Update to 2.7.11.
* gnu/packages/python.scm (python-2): Update to 2.7.11.
2016-02-15 09:25:30 +02:00
Mark H Weaver 7de5236a1d gnu: gnutls: Update to 3.4.9.
* gnu/packages/tls.scm (gnutls): Update to 3.4.9.
2016-02-15 00:50:26 -05:00
Leo Famulari 68bcac6b62 gnu: btrfs-progs: Fix license.
Reported by Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com>

* gnu/packages/linux.scm (btrfs-progs)[license]: Add GPL2 to list of licenses.
2016-02-14 21:04:05 -05:00
Nils Gillmann acb381566c gnu: font-terminus: Update to 4.40
* gnu/packages/fonts.scm (font-terminus): Update to 4.40.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-14 20:46:49 -05:00
Andreas Enge b6b07d9de3 gnu: python-ly: Update to 0.9.3.
* gnu/packages/python.scm (python-ly): Update to 0.9.3.
2016-02-14 21:49:56 +01:00
Mark H Weaver b042bdc8fd gnu: lxqt: Update source URLs to use HTTPS.
* gnu/packages/lxqt.scm (libqtxdg, liblxqt, lxqt-common)
  (lxqt-session)[source]: Use HTTPS URLs.
2016-02-14 08:48:13 -05:00
Efraim Flashner 38b209110e gnu: openbox: Update to 3.6.1.
* gnu/packages/openbox.scm (openbox): Update to 3.6.1.
2016-02-14 09:51:47 +02:00
Efraim Flashner 8826fb241e gnu: postgresql: Update to 9.3.11. [fixes CVE-2015-{5288,5289},CVE-2016-{0766,0773}]
* gnu/packages/databases.scm (postgresql): Update to 9.3.11.
2016-02-14 09:34:27 +02:00
Mark H Weaver b7bc8611d0 gnu: sqlite: Update to 3.10.2.
* gnu/packages/databases.scm (sqlite): Update to 3.10.2.
2016-02-13 21:55:57 -05:00
Jochem Raat 3c697ffda3 gnu: Add baobab.
* gnu/packages/gnome.scm (baobab): New variable.
2016-02-13 21:09:42 -05:00
Al McElrath aa0edd3f5b gnu: Add pianobar.
* gnu/packages/music.scm (pianobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-13 18:40:04 -05:00
Christopher Allan Webber cb34dc6c3e gnu: Add python-wtforms
* gnu/packages/python.scm (python-wtforms, python2-wtforms): New variables.
2016-02-13 15:03:10 -08:00
Alex Kost 75cd4b053e gnu: iproute: Update to 4.4.0.
* gnu/packages/linux.scm (iproute): Update to 4.4.0.
2016-02-13 20:39:34 +03:00
Alex Kost b53e44fb4e gnu: iproute: Use 'modify-phases'.
* gnu/packages/linux.scm (iproute)[arguments]: Use 'modify-phases'.
2016-02-13 20:39:34 +03:00
Andreas Enge a42d99f284 gnu: calibre: Update to 2.51.0.
* gnu/packages/ebook.scm (calibre): Update to 2.51.0.
2016-02-13 14:34:50 +01:00
Andreas Enge ec4130b7e7 gnu: gnuplot: Update to 5.0.2.
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
2016-02-13 13:37:49 +01:00
Jan Nieuwenhuizen 8c1088bb0f gnu: lablgtk: Build cmxa libraries.
* gnu/packages/ocaml.scm (lablgtk)[arguments]: Add the make target "opt"
  to also build *.cmxa files.
2016-02-13 09:23:20 +01:00
Jan Nieuwenhuizen 6372e336a2 gnu: ocaml: Set search path.
* gnu/packages/ocaml.scm (ocaml): Register OCAMLPATH as a search path.
2016-02-13 09:21:58 +01:00
Jan Nieuwenhuizen a747baba00 gnu: Add ocaml-findlib.
* gnu/packages/ocaml.scm (ocaml-findlib): New variable.
* gnu/packages/patches/ocaml-findlib-make-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
2016-02-13 09:15:55 +01:00
Mark H Weaver 3a7261bf96 gnu: gnupg: Add upstream fix for test failures on x86_64.
Fixes <https://debbugs.gnu.org/22558>.

* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
2016-02-12 21:02:24 -05:00
Jan Nieuwenhuizen 511539ae81 gnu: Add tclxml.
* gnu/packages/patches/tclxml-3.2-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tclxml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-12 19:13:05 -05:00
Leo Famulari 6cefd53d3e gnu: Split acme into python-acme and python2-acme.
* gnu/packages/tls.scm (acme): Split variable into...
(python-acme, python2-acme): ...both Python variants.
(letsencrypt)[propagated-inputs]: Update user of renamed variable.
2016-02-12 18:50:32 -05:00
Leo Famulari 8ad4ae204f gnu: python-wheel: Define 'python2-variant'.
* gnu/packages/python.scm (python-wheel)[properties]: New field.
(python2-wheel): Use 'strip-python2-variant'.
(python2-requests): Take the result of 'package-with-python2' directly.
* gnu/packages/openstack.scm (python2-requests-mock): Likewise.
(python2-oslosphinx): Likewise.
2016-02-12 18:50:32 -05:00
Leo Famulari a14600ecfa gnu: python-jsonschema: Define 'python2-variant'.
* gnu/packages/python.scm (python-jsonschema)[properties]: New field.
(python2-jsonschema): Use 'strip-python2-variant'.
* gnu/packages/openstack.scm (python2-tempest-lib): Take the result of
'package-with-python2' directly.
2016-02-12 18:50:32 -05:00
Leo Famulari 519e2f4fde gnu: python-cryptography: Define 'python2-variant'.
* gnu/packages/python.scm (python-cryptography)[properties]: New field.
(python2-cryptography): Use 'strip-python2-variant'.
(python2-pyopenssl): Take the result of 'package-with-python2' directly.
2016-02-12 18:50:32 -05:00
Jan Nieuwenhuizen 50fe318c3c gnu: Add tcllib.
* gnu/packages/tcl.scm (tcllib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-12 18:01:05 -05:00
Jan Nieuwenhuizen e4c38581f3 gnu: tcl: Use tcl/tk license.
* gnu/packages/tcl.scm (tcl)[license]: Use the tcl/tk license variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-12 18:01:05 -05:00
Ricardo Wurmus 0d0bcaa08e gnu: macs: Update to 2.1.0.20151222.
* gnu/packages/bioinformatics.scm (macs): Update to 2.1.0.20151222.
2016-02-12 18:16:16 +01:00
Ricardo Wurmus 43ec07f17c gnu: macs: Use "pypi-uri".
* gnu/packages/bioinformatics.scm (macs)[source]: Use "pypi-uri" to
  build source URI.
2016-02-12 18:16:16 +01:00
Ricardo Wurmus b074e7d486 gnu: python2-fastlmm: Update to 0.2.21.
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.21.
2016-02-12 10:58:46 +01:00
Ricardo Wurmus 3f2e9675fb gnu: python2-pysnptools: Update to 0.3.5.
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.5.
2016-02-12 10:58:46 +01:00
Ricardo Wurmus ef9b4c04a4 gnu: python-numpy-bootstrap: Update to 1.10.4.
* gnu/packages/python.scm (python-numpy-bootstrap): Update to 1.10.4.
2016-02-12 10:58:46 +01:00
Ricardo Wurmus 1b96f069e6 gnu: python-pandas: Update to 0.16.2.
* gnu/packages/python.scm (python-pandas): Update to 0.16.2.
2016-02-12 10:58:46 +01:00
Ni* Gillmann 3ccdd4305e gnu: Add gnunet-gtk.
* gnu/packages/gnunet.scm (gnunet-gtk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-02-12 10:17:05 +01:00
Ricardo Wurmus 1eb6bbd8c0 gnu: gnunet: Add gstreamer and plugins to inputs.
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add "gstreamer" and
  "gst-plugins-base".
2016-02-12 08:09:19 +01:00
Tobias Geerinckx-Rice 3a9cfba879 install: Add btrfs-progs to the image.
* gnu/system/install.scm (installation-os)[packages]: Add BTRFS-PROGS.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-11 21:39:30 -05:00
Tobias Geerinckx-Rice fc686f9a19 gnu: Add btrfs-progs.
* gnu/packages/linux.scm (btrfs-progs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-11 21:02:06 -05:00
Mark H Weaver e57127fbe1 Revert "gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]"
This reverts commit 759246ad48.
2016-02-11 16:31:19 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes.
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
2016-02-11 14:59:16 -05:00
Efraim Flashner 759246ad48 gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]
* gnu/packages/web.scm (nginx): Update to 1.9.11.
2016-02-11 21:36:43 +02:00
Efraim Flashner d2ca99ccbd gnu: feh: Update to 2.14.1.
* gnu/packages/feh.scm (feh): Update to 2.14.1.
2016-02-11 12:46:55 +02:00
Efraim Flashner 9b719875be gnu: obs: Update to 0.13.1.
* gnu/packages/video.scm (obs): Update to 0.13.1.
2016-02-11 11:11:44 +02:00
Efraim Flashner 50beb63b7a gnu: fribidi: Update to 0.19.7.
* gnu/packages/fribidi.scm (fribidi): Update to 0.19.7.
2016-02-11 11:00:36 +02:00
Efraim Flashner 992b527d52 gnu: alsa-utils: Update to 1.1.0.
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.0.
2016-02-11 09:26:55 +02:00
Ricardo Wurmus 138e76972a gnu: zynaddsubfx: Update to 2.5.3.
* gnu/packages/music.scm (zynaddsubfx): Update to 2.5.3.
2016-02-11 08:25:03 +01:00
Leo Famulari a2a06c51ab gnu: htop: Update to 2.0.0.
* gnu/packages/admin.scm (htop): Update to 2.0.0.
2016-02-11 00:31:10 -05:00
Al McElrath 8a75c589aa gnu: Add notmuch-addrlookup-c.
* gnu/packages/mail.scm (notmuch-addrlookup-c): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-10 17:08:24 -05:00
Ludovic Courtès c96ba2cf5e install: Do not cache lookup failures.
Possibly fixes <http://bugs.gnu.org/22209>.

* gnu/system/install.scm (%nscd-minimal-caches)[negative-time-to-live]:
Set to zero.
2016-02-10 21:47:31 +01:00
Leo Famulari 8823ed4e12 gnu: Fix syntax error in postgresql-service.
Fixes <http://bugs.gnu.org/22618>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/services/databases.scm (%default-postgres-config): Add missing
quote in default configuration.
2016-02-10 15:34:11 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}.
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
2016-02-10 10:41:11 -05:00
Mark H Weaver 42395bf514 gnu: nettle: Update to 3.2 [fixes CVE-2015-{8803,8804,8805}].
* gnu/packages/nettle.scm (nettle): Update to 3.2.
2016-02-10 10:41:11 -05:00
Ludovic Courtès 4ecbf6d282 gnu: haunt: Wrap 'haunt' command so that it finds its modules.
* gnu/packages/guile.scm (haunt)[arguments]: New field.
2016-02-10 15:15:17 +01:00
Ludovic Courtès f5582b2c1d system: Selected locale is automatically built.
Fixes <http://bugs.gnu.org/22572>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/system/locale.scm (%not-dot): New variable.
(denormalize-codeset, locale-name->definition): New procedures.
* gnu/system.scm (locale-name->definition*): New procedure.
(operating-system-locale-directory): Instead of raising an error, add
the missing locale.
* doc/guix.texi (Locales): Adjust accordingly.
2016-02-10 15:15:17 +01:00
Alex Kost 32e1611206 gnu: emacs-debbugs: Update to 0.9.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.9.
[propagated-inputs]: Add 'emacs-async'.
2016-02-10 01:34:17 +03:00
Alex Kost b654de6da1 gnu: Add emacs-async.
* gnu/packages/emacs.scm (emacs-async): New variable.
2016-02-10 01:34:17 +03:00
Alex Kost 3db5ed11da gnu: magit: Update to 2.5.0.
* gnu/packages/emacs.scm (magit): Update to 2.5.0.
[propagated-inputs]: Add 'emacs-with-editor'.
[arguments]: Make with WITH_EDITOR_DIR.
2016-02-10 01:34:17 +03:00
Alex Kost 2b0e43003c gnu: Add emacs-with-editor.
* gnu/packages/emacs.scm (emacs-with-editor): New variable.
2016-02-10 01:34:17 +03:00
Pjotr Prins f1957fc145 gnu: Add munge.
* gnu/packages/admin.scm (munge): New variable.
2016-02-09 20:43:32 +01:00
Leo Famulari 9bee9d87dc gnu: acme: Disable egg compression.
* gnu/packages/python.scm (acme)[arguments]: Add
'disable-egg-compression' phase.
2016-02-08 23:45:06 -05:00
Leo Famulari 0c7320dc89 gnu: letsencrypt and acme: Update to 0.3.0.
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.3.0.
(acme): Update to 0.3.0.
2016-02-08 23:04:07 -05:00
David Thompson fe65ef54c5 youtube-dl: Update to 2016.02.05.1.
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.05.1.
2016-02-08 21:47:51 -05:00
Ludovic Courtès 939c5c31d6 system: Add Texinfo to '%base-packages'.
Fixes <http://bugs.gnu.org/22598>.
Reported by myglc2 <myglc2@gmail.com>.

* gnu/system.scm (%base-packages): Add TEXINFO.
2016-02-08 23:46:46 +01:00
Ludovic Courtès 1f1ff6a0e7 linux-container: Accept file systems with a UUID 'source'.
* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]:
Check whether SOURCE is a string before calling 'string-prefix?'.
2016-02-08 23:46:46 +01:00
Ludovic Courtès 6eb439070a file-systems: Spawn a Bournish REPL upon fsck failure.
Fixes <http://bugs.gnu.org/22588>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/build/file-systems.scm (check-file-system): Pass
%BOURNISH-LANGUAGE as the argument to 'start-repl'.
* gnu/services.scm (activation-script): Add (guix build bournish).
* gnu/services/base.scm (file-system-shepherd-service)[imported-modules]:
Likewise.
* gnu/system/linux-container.scm (container-script): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
2016-02-08 23:46:46 +01:00
Ludovic Courtès f2e4805b7e Add (guix build bournish) and use it in the initrd.
* guix/build/bournish.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/system/linux-initrd.scm (base-initrd): Add (guix build bournish)
and use it.
2016-02-08 23:46:46 +01:00
Nils Gillmann 423eef362b gnu: add lispf4
* gnu/packages/lisp.scm (lispf4): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-08 15:09:34 -05:00
Mark H Weaver 7fb51d9742 gnu: dbus: Use https source URL.
* gnu/packages/glib.scm (dbus)[source]: Use https URL.
2016-02-08 08:59:00 -05:00
Rene Saavedra 8b8775454b gnu: Add nautilus.
* gnu/packages/gnome.scm (nautilus): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-02-08 13:48:16 +08:00
Leo Famulari 16095d2729 gnu: python-pillow: Update to 3.1.1 [fixes CVE-2016-{0740, 0775}].
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.1.1.
2016-02-08 00:25:40 -05:00
Christopher Allan Webber 3d4f9d5cde gnu: Add assword.
* gnu/packages/password-utils.scm (assword): New variable.
2016-02-07 14:57:52 -08:00
Christopher Allan Webber 0bdc1671e4 gnu: Add python2-xdo.
* gnu/packages/python.scm (python2-xdo): New variable.
2016-02-07 14:57:52 -08:00
Ludovic Courtès 57b7b8cd60 gnu: python-matplotlib: Define 'python2-variant'.
* gnu/packages/python.scm (python2-numpy): Take the result of
'package-with-python2' directly.
(python2-scipy): Likewise.
(python-matplotlib)[properties]: New field.
(python2-matplotlib): Call 'strip-python2-variant'.
2016-02-07 23:46:01 +01:00
Ludovic Courtès 48b311b1b3 gnu: python-cython: Define 'python2-variant'.
* gnu/packages/python.scm (python-cython)[properties]: New field.
(python2-cython): Use 'strip-python2-variant'.
2016-02-07 23:46:01 +01:00
Ludovic Courtès 7ec42f1d8a gnu: python-pycairo: Define 'python2-variant'.
* gnu/packages/gtk.scm (python-pycairo)[properties]: New field.
(python2-pycairo): Use 'strip-python2-variant'.
2016-02-07 23:46:01 +01:00
Ludovic Courtès 00f2bf3433 gnu: python-pygobject: Define 'python2-variant'.
* gnu/packages/glib.scm (python-pygobject)[properties]: New field.
(python2-pygobject): Use 'strip-python2-variant'.
2016-02-07 23:46:01 +01:00
Ludovic Courtès 5540929500 gnu: upower: Install man pages.
* gnu/packages/gnome.scm (upower)[native-inputs]: Add LIBXML2, LIBXSLT,
and DOCBOOK-XSL.
2016-02-07 23:46:01 +01:00
Efraim Flashner 17d2e86d49 gnu: keepassx: Update to 2.0.2.
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.2.
2016-02-07 21:37:00 +02:00
Fabian Harfert 6366cef38d gnu: Add libcanberra-gtk2.
* gnu/packages/libcanberra.scm (libcanberra/gtk+-2): New variable.
2016-02-07 16:49:51 +01:00
Efraim Flashner fe476868df gnu: python2-pysqlite: Update to 2.8.1.
* gnu/packages/python.scm (python2-pysqlite): Update to 2.8.1.
[source]: Change to `pypi uri` syntax.
[home-page]: Update to new homepage.
2016-02-07 15:59:54 +02:00
Efraim Flashner f2d06d4697 gnu: python2-backport-ssl-match-hostname: Update to 3.5.0.1.
* gnu/packages/python.scm (python2-backport-ssl-match-hostname):
Update to 3.5.0.1.
[arguments]: Skip tests.
[synopsis]: Update for python version 3.5.x.
2016-02-07 15:24:43 +02:00
Efraim Flashner ce6c13ee8c gnu: python-cryptography: Update to 1.2.2.
* gnu/packages/python.scm (python-cryptography): Update to 1.2.2.
[source]: Change to `pypi uri` syntax.
[native-inputs]: Add python-pyasn1, python-pyasn1-modules,
python-hypothesis.
(python2-cryptography)[propagated-inputs]: Add
python2-backport-ssl-match-hostname
2016-02-07 14:26:57 +02:00
Efraim Flashner b39b33e8c8 gnu: python-cryptography-vectors: Update to 1.2.2.
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.2.2.
2016-02-07 13:57:44 +02:00
Efraim Flashner 6fb54e3bd4 gnu: python-pip: Update to 8.0.2.
* gnu/packages/python.scm (python-pip): Update to 8.0.2.
[source]: Change to `pypi uri` syntax.
2016-02-07 13:38:16 +02:00
Efraim Flashner 5b669ba1e3 gnu: python-gnupg: Update to 0.3.8.
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.3.8.
[source]: Change to 'pypi uri` syntax.
2016-02-07 12:58:54 +02:00
Alex Kost b3fee145df system: Fix EMACSLOADPATH.
After commit 13fe4891fa, Emacs package
includes "site-start.el", and it has a priority over
"/etc/emacs/site-start.el" on GuixSD because "/etc/emacs" is added to
the end of 'load-path'.

* gnu/system.scm (operating-system-environment-variables): Change
  EMACSLOADPATH to prepend "/etc/emacs" to 'load-path' instead of
  appending.
2016-02-07 11:24:35 +03:00
宋文武 6588c2834a gnu: curl: Use 'https' URL.
Reported by marusich on #guix.

* gnu/packages/curl.scm (curl)[source]: Use 'https' URL.
2016-02-07 10:41:40 +08:00
Christopher Allan Webber 6f74aecdb3 gnu: xdotools: Update to 3.20150503.1
* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1.
* gnu/packages/patches/xdotool-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-02-06 15:39:51 -08:00
Ludovic Courtès d9f0788ad2 gnu: guile-next: Update to 2.1.2.
* gnu/packages/guile.scm (guile-next): Update to 2.1.2.  Add 'snippet'.
2016-02-06 21:46:25 +01:00
Ludovic Courtès 8c4c2a983e gnu: Add Texinfo 6.1.
* gnu/packages/texinfo.scm (texinfo-6.1): New variable.
* gnu/packages/emacs.scm (emacs): Add comment about 'info.info'.
2016-02-06 21:46:25 +01:00
Christopher Allan Webber a05d1d82c0 gnu: Add python-pygpgme
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables.
* gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-02-06 11:30:35 -08:00
Mark H Weaver 08cb746f08 gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites.
* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
2016-02-06 08:48:20 -05:00
Ludovic Courtès e7ad0d5862 services: elogind: Extend PAM to use 'pam_elogind.so'.
Thanks to Andy Wingo <wingo@igalia.com> for explaining this at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00439.html>.

* gnu/services/desktop.scm (pam-extension-procedure): New procedure.
(elogind-service-type): Extend PAM-ROOT-SERVICE-TYPE.
2016-02-06 12:01:42 +01:00
Ludovic Courtès 12c00bca92 system: pam: 'pam-root-service-type' can be extended with transformations.
* gnu/system/pam.scm (<pam-configuration>): New record type.
(/etc-entry): Change 'services' parameter' to 'config'.  Honor the
'transform' field of CONFIG.
(extend-configuration): New procedure.
(pam-root-service-type): Use EXTEND-CONFIGURATION as the 'extend'
field.
(pam-root-service): Add #:transform parameter.  Service value is a
<pam-configuration>.
2016-02-06 12:01:42 +01:00
Ludovic Courtès d7bce31c36 system: pam: Export accessors.
* gnu/system/pam.scm: Export <pam-service> and <pam-entry> accessors.
2016-02-06 12:01:42 +01:00
Fabian Harfert b7807bb2fa gnu: Add murrine.
* gnu/packages/gtk.scm (murrine): New variable.
2016-02-06 13:35:29 +08:00
Fabian Harfert 9ba5198c4c gnu: Add gtk-engines.
* gnu/packages/gtk.scm (gtk-engines): New variable.
2016-02-06 13:32:59 +08:00
Andreas Enge eb2afd000c gnu: r: Drop input lapack.
* gnu/packages/statistics.scm (r)[inputs]: Drop lapack, which is
  recommended by the manual.
  [arguments]: Adapt configure flags.
2016-02-05 23:20:43 +01:00
Ludovic Courtès 05c5b16585 services: elogind: Add elogind to the global profile.
* gnu/services/desktop.scm (elogind-service-type): Extend
PROFILE-SERVICE-TYPE.
2016-02-05 22:10:42 +01:00
Ludovic Courtès edc891fa76 services: upower: Add upower to the global profile.
* gnu/services/desktop.scm (upower-service-type): Extend
PROFILE-SERVICE-TYPE.
2016-02-05 22:10:42 +01:00
Ludovic Courtès 42c97811c9 gnu: vpnc: Make sure 'vpnc-script' finds the commands it needs.
* gnu/packages/vpn.scm (vpnc)[inputs]: Add NET-TOOLS and IPROUTE.
[arguments]: Use 'modify-phases'.  Wrap 'vpnc-script'.
2016-02-05 22:10:42 +01:00
Mark H Weaver a7d8c466db gnu: icecat: Update to 38.6.0-gnu1.
* gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1.
  [source]: Remove patches.
2016-02-05 16:00:25 -05:00
Andreas Enge 95b754a17a gnu: r: Drop input openblas.
* gnu/packages/statistics.scm (r)[inputs]: Drop openblas.
  [arguments]: Adapt configure flags. This makes the build succeed
  on armhf-linux.
2016-02-05 20:51:39 +01:00
Efraim Flashner 22b0caa3ed gnu: glibmm: Update to 2.46.3.
* gnu/packages/glib.scm (glibmm): Update to 2.46.3.
2016-02-05 16:02:26 +02:00
Efraim Flashner 93e3be9abd gnu: gedit: Update to 3.18.3.
* gnu/packages/gnome.scm (gedit): Update to 3.18.3.
2016-02-05 16:02:26 +02:00
Efraim Flashner 7965a94a67 gnu: gtksourceview: Update to 3.18.2.
* gnu/packages/gtk.scm (gtksourceview): Update to 3.18.2.
2016-02-05 16:02:26 +02:00
Efraim Flashner 5b00397279 gnu: atkmm: Update to 2.24.2.
* gnu/packages/gtk.scm (atkmm): Update to 2.24.2.
2016-02-05 16:02:26 +02:00
Efraim Flashner f58219569c gnu: libxml++: Update to 3.0.0.
* gnu/packages/gnome.scm (libxml++): Update to 3.0.0.
2016-02-05 16:02:26 +02:00
Efraim Flashner 73836c7de8 gnu: ffmpeg: Update to 2.8.6.
* gnu/packages/video.scm (ffmpeg): Update to 2.8.6.
2016-02-05 16:02:26 +02:00
Efraim Flashner e267435787 gnu: vte: Update to 0.42.3.
* gnu/packages/gnome.scm (vte): Update to 0.42.3.
2016-02-05 16:02:26 +02:00
Andreas Enge 71ee51a057 gnu: libbluray: Drop unused inputs.
* gnu/packages/video.scm (libbluray)[inputs]: Remove doxygen, perl and
  texlive. The first one is checked during the configure phase, but no
  documentation is actually built anyway.
2016-02-05 14:42:13 +01:00
Ludovic Courtès 234ea8a71c service: shepherd: All of the config file is in 'call-with-error-handling'.
* gnu/services/shepherd.scm (shepherd-configuration-file)[config]: Wrap
all the body in 'call-with-error-handling'.
2016-02-05 14:01:46 +01:00
Ludovic Courtès 081bd3bd29 service: shepherd: Guard against exceptions raised by 'start'.
Fixes <http://bugs.gnu.org/22548>.
Reported by Albin <albin@fripost.org>, Mark H Weaver, and Alex Kost.

* gnu/services/shepherd.scm (shepherd-configuration-file)[config]: Guard
against 'service-error?'.
2016-02-05 14:01:46 +01:00
Ludovic Courtès 1d6b7d5847 guix system: Simply warn if we cannot talk to the shepherd.
Before that 'open-connection' would return #f, and thus
'current-services' would return a single #f value when its continuation
expects two.

Reported by calher on #guix.

* gnu/services/herd.scm (open-connection): Rethrow system-error
exceptions.
(with-shepherd): Expect CONNECTION to always be true; remove useless
'dynamic-wind'.
* guix/scripts/system.scm (warn-on-system-error): New macro.
(upgrade-shepherd-services): Wrap body in 'warn-on-system-error'.
2016-02-05 14:01:46 +01:00
Ludovic Courtès 6b55ee8889 gnu: net-tools: Update URLs.
Reported by Jookia <166291@gmail.com> and Leo Famulari <leo@famulari.name>.

* gnu/packages/linux.scm (net-tools)[home-page]: Switch to SourceForge.
[source]: Add SourceForge and ibiblio.org URLs.
2016-02-05 14:01:46 +01:00
Tobias Geerinckx-Rice 0f860464bd gnu: Add sdparm.
* gnu/packages/disk.scm (sdparm): New variable.
2016-02-05 09:30:29 +01:00
Mark H Weaver b9da375999 gnu: mplayer: Update to 1.2.1.
* gnu/packages/video.scm (mplayer): Update to 1.2.1.
2016-02-04 22:06:01 -05:00
Leo Famulari 90bcecc568 gnu: jasper: Add fixes for several security flaws.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
2016-02-04 15:09:41 -05:00
Ludovic Courtès a6312f1dd0 install: Add glibc to the global profile.
Suggested by petter on #guix.

* gnu/system/install.scm (installation-os)[packages]: Add glibc.
2016-02-04 12:21:34 +01:00
Leo Famulari 202e2e412a gnu: harfbuzz: Update to 1.0.6 [fixes CVE-2016-2052].
* gnu/packages/gtk.scm (harfbuzz): Update to 1.0.6.
2016-02-04 00:15:21 -05:00
Mark H Weaver 5fb205c638 gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f.
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
2016-02-04 00:15:21 -05:00
Mark H Weaver 19f339526f gnu: openssl: Update to 1.0.2f [fixes CVE-2015-3197 and CVE-2016-0701].
* gnu/packages/tls.scm (openssl): Update to 1.0.2f.
  [arguments]: Remove the 'fix-broken-symlinks' phase.
2016-02-04 00:15:21 -05:00
Leo Famulari bdbb7c1852 gnu: curl: Update to 7.47.0 [fixes CVE-2016-0755].
* gnu/packages/curl.scm (curl): Update to 7.47.0.
2016-02-04 00:15:21 -05:00
Mark H Weaver dfb9001ad8 linux-initrd: Add serpent_generic and wp512 to the default set of modules.
Adds modules needed for encrypted root partitions using the Serpent cipher or
Whirlpool digest algorithms.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add
  "serpent_generic" and "wp512".
2016-02-03 16:48:06 -05:00
Mark H Weaver cc023e320e linux-initrd: Add hid-generic and hid-apple to the default set of modules.
Fixes keyboard of MacBook2,1 during early boot, e.g. for typing a password to
mount an encrypted root partition.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add "hid-generic"
  and "hid-apple".
2016-02-03 16:43:42 -05:00
Ludovic Courtès 37dd1e6a34 services: 'file-union' makes sure each source file exists.
Before that, specifying an invalid timezone in 'operating-system' would
lead to a dangling symlink in the 'etc' directory, which in turn would
lead to a kernel panic at boot time.

Reported by pizzaiolo on #guix.

* gnu/services.scm (file-union): Add 'stat' call for SOURCE.
2016-02-03 22:28:28 +01:00
Ludovic Courtès 240b57f0ca guix system: 'reconfigure' loads and starts new services.
Partly fixes <http://bugs.gnu.org/22039>.

* gnu/services/herd.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/services/shepherd.scm (shepherd-service-canonical-name): New
procedure.
(shepherd-service-file): Export.
* guix/scripts/system.scm (upgrade-shepherd-services): New procedure.
(switch-to-system): Use it.
* guix/ui.scm (info): New procedure.
* doc/guix.texi (Invoking guix system): Mention system services.
2016-02-03 22:28:28 +01:00
Efraim Flashner 98416109d5 gnu: libdvdcss: Update to 1.4.0.
* gnu/packages/video.scm (libdvdcss): Update to 1.4.0.
[source]: Change source url.
2016-02-03 22:20:56 +02:00
Efraim Flashner 321a0299a7 gnu: youtube-dl: Update to 2016.02.01.
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.01.
2016-02-03 22:20:56 +02:00
Efraim Flashner dabd7c9b68 gnu: enlightenment: Update to 0.20.5.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.5.
2016-02-03 22:20:56 +02:00
Efraim Flashner e11e76b68e gnu: emotion-generic-players: Update to 1.17.0.
* gnu/packages/enlightenment.scm (emotion-generic-players): Update to 1.17.0.
2016-02-03 22:20:56 +02:00
Efraim Flashner da5e7616a0 gnu: evas-generic-loaders: Update to 1.17.0.
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update to 1.17.0.
2016-02-03 22:20:56 +02:00
Efraim Flashner 58fc31670a gnu: elementary: Update to 1.17.0.
* gnu/packages/enlightenment.scm (elementary): Update to 1.17.0.
2016-02-03 22:20:56 +02:00
Efraim Flashner 7b2f2fbf08 gnu: efl: Update to 1.17.0.
* gnu/package/enlightenment.scm (efl): Update to 1.17.0.
2016-02-03 22:20:56 +02:00
Andreas Enge 37d6b0978c gnu: hwloc: Build without numactl support on armhf.
* gnu/packages/mpi.scm (hwloc)[inputs]: Drop numactl on armhf, where the
  package is not available.
2016-02-03 21:05:51 +01:00
Andreas Enge 35dfcdd753 gnu: numactl: Remove unsupported system armhf-linux.
* gnu/packages/linux.scm (numactl)[supported-systems]: Remove armhf.
2016-02-03 21:03:46 +01:00
Mark H Weaver d120b1d433 gnu: Remove linux-libre-4.2.5.
This series is no longer supported upstream.

* gnu/packages/linux.scm (linux-libre-4.2.5): Remove variable.
2016-02-03 14:26:57 -05:00
Andreas Enge 11b953a1b1 gnu: pius: Update to 2.2.2.
* gnu/packages/gnupg.scm (pius): Update to 2.2.2.
2016-02-03 15:49:07 +01:00
Andreas Enge cea18ab00b gnu: gnupg: Update to 2.1.11.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.11.
2016-02-03 15:49:07 +01:00
Efraim Flashner 35f6c4972e gnu: ao: Update to 1.2.0.
* gnu/packages/xiph.scm (ao): Update to 1.2.0.
2016-02-03 13:10:37 +02:00
Ludovic Courtès 2a5f0db4c4 system: /etc/profile reads /etc/environment for the sake of lshd.
Fixes <http://bugs.gnu.org/22175>.

* gnu/system.scm (operating-system-etc-service)[profile]: Add hack to
define variables from /etc/environment.
2016-02-03 11:21:11 +01:00
Federico Beffa 3a6a0f6013 gnu: Add Italian Aspell dictionary.
* gnu/packages/aspell.scm (aspell-dict-it): New variable.
2016-02-03 10:48:36 +01:00
Federico Beffa 05f5ce0c39 gnu: sbcl: Generate and install documentation.
* gnu/packages/lisp.scm (sbcl): Add 'doc' output.
  [arguments]: Add 'build-doc' and 'install-doc' phases.
  [native-inputs]: Add 'texlive' and 'texinfo'.
2016-02-03 10:48:36 +01:00
Federico Beffa 1ee131df42 gnu: sbcl: Convert to the 'modify-phases' syntax.
* gnu/packages/lisp.scm (sbcl): Do it.
2016-02-03 10:48:36 +01:00
Federico Beffa 85960693e4 gnu: Add emacs-slime.
* gnu/packages/emacs.scm (emacs-slime): New variable.
2016-02-03 10:48:36 +01:00
Federico Beffa f163c290f1 gnu: mit-scheme: Generate and install documentation.
* gnu/packages/scheme.scm (mit-scheme): Add 'doc' output.
  [arguments]: Add phases 'configure-doc, 'build-doc and 'install-doc.
  [native-inputs]: Add 'texlive'. Move 'texinfo' and 'm4' from inputs.
2016-02-03 10:48:36 +01:00
Federico Beffa af00e63352 gnu: mit-scheme: Convert to the 'modify-phases' syntax.
* gnu/packages/scheme.scm (mit-scheme): Do it.
2016-02-03 10:48:36 +01:00
Federico Beffa e5045f303a gnu: Add emacs-constants.
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2016-02-03 10:48:36 +01:00
Federico Beffa 58a7dc1340 gnu: Add emacs-mit-scheme-doc.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): New variable.
2016-02-03 10:47:21 +01:00
Federico Beffa aad4a48ab4 gnu: scmutils: Generate 'scmutils-autoloads.el' file.
* gnu/packages/scheme.scm (scmutils): Do it.
2016-02-03 10:47:21 +01:00
Federico Beffa e037a09f1d gnu: Add emacs-scheme-complete.
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
2016-02-03 10:47:21 +01:00
Mark H Weaver fd9a5b0fc3 gnu: qemu: Update to 2.5.0; add fixes for security flaws.
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
  gnu/packages/patches/qemu-CVE-2015-8558.patch,
  gnu/packages/patches/qemu-CVE-2015-8567.patch,
  gnu/packages/patches/qemu-CVE-2015-8613.patch,
  gnu/packages/patches/qemu-CVE-2015-8701.patch,
  gnu/packages/patches/qemu-CVE-2015-8743.patch,
  gnu/packages/patches/qemu-CVE-2016-1568.patch,
  gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
  new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
  [source]: Remove old patches and add new ones.
  [arguments]: Add 'disable-test-qga' phase.
  (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
2016-02-03 00:05:22 -05:00
Mark H Weaver 80cc3a0a4a gnu: openssl: When computing URI, use 'string-trim-right' not 'string-take'.
* gnu/packages/tls.scm (openssl)[source]: When computing URI, use
  'string-trim-right' instead of 'string-take'.
2016-02-02 21:16:44 -05:00
宋文武 4c28ca1df4 gnu: yelp: Update to 3.18.1.
* gnu/packages/gnome.scm (yelp): Update to 3.18.1.
2016-02-03 09:54:14 +08:00
宋文武 6a203844c5 gnu: webkitgtk: Update to 2.10.7.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.7.
2016-02-03 09:37:47 +08:00
Efraim Flashner e81e5fa507 gnu: openssl: Add alternate url.
* gnu/packages/tls.scm (openssl)[source]: Add alternate url.
2016-02-02 23:23:24 +02:00
Ludovic Courtès 400ed6acdd gnu: eudev: Add variant that depends on libblkid.
This fixes a bug whereby /dev/disk/by-{label,id} would be missing on
GuixSD (/dev/disk/by-id would still contain device-mapped partitions
though.)

Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/linux.scm (eudev-with-blkid): New variable.
* gnu/services/base.scm (udev-service): #:udev defaults to
EUDEV-WITH-BLKID.
* gnu/system.scm (%base-packages): Replace EUDEV with EUDEV-WITH-BLKID.
2016-02-02 21:16:59 +01:00
Federico Beffa 81fc64da7e gnu: aspell: Wrap binary to find dictionaries.
* gnu/packages/aspell.scm (aspell): Add 'wrap-aspell' phase.
* gnu/system.scm (operating-system-etc-service): Remove 'ASPELL_CONF'
definition.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-02-02 21:16:59 +01:00
Leo Famulari 8c44dabc5a gnu: vdirsyncer: Update to 0.8.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.8.1.
[native-inputs]: Add python-hypothesis, python-pytest-subtesthack.
2016-02-02 14:49:26 -05:00
Leo Famulari 7517e73c75 gnu: Add python-pytest-subtesthack.
* gnu/packages/python.scm (python-pytest-subtesthack,
python2-pytest-subtesthack): New variables.
2016-02-02 14:49:26 -05:00
Leo Famulari 6a44697d01 gnu: Add python-hypothesis.
* gnu/packages/python.scm (python-hypothesis, python2-hypothesis): New
variables.
2016-02-02 14:49:26 -05:00
David Thompson f861b8b8e0 gnu: Add awscli.
* gnu/packages/python.scm (awscli): New variable.
2016-02-02 09:24:17 -05:00
David Thompson 935fcd5cf6 gnu: Add python-botocore.
* gnu/packages/python.scm (python-botocore): New variable.
2016-02-02 09:23:00 -05:00
David Thompson ba9da248a6 gnu: Add python-jmespath.
* gnu/packages/python.scm (python-jmespath): New variable.
2016-02-02 09:23:00 -05:00
David Thompson a4af21ca6d gnu: Add python-tox.
* gnu/packages/python.scm (python-tox): New variable.
2016-02-02 09:23:00 -05:00
David Thompson c0aacfa5b9 gnu: Add python-pluggy.
* gnu/packages/python.scm (python-pluggy): New variable.
2016-02-02 09:23:00 -05:00
David Thompson f5bcec6e7d gnu: Add python-rsa.
* gnu/packages/python.scm (python-rsa, python2-rsa): New variables.
2016-02-02 09:23:00 -05:00
David Thompson 2b2f2fc179 gnu: Add python-colorama.
* gnu/packages/python.scm (python-colorama, python2-colorama): New
  variables.
2016-02-02 09:23:00 -05:00
Ben J. Woodcroft ce294c0445 gnu: Update sortmerna to 2.1.
* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1.
2016-02-02 22:42:38 +10:00
Leo Famulari 0889321b5e gnu: ntp: Update to 4.2.8p6.
Fixes CVE-2015-{7973, 7974, 7975, 7976, 7977, 7978, 7979, 8138, 8158}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p6.
2016-02-02 03:14:41 -05:00
Mark H Weaver adddd5ba3b gnu: Add linux-libre-4.1.
* gnu/packages/linux-libre-4.1-i686.conf,
  gnu/packages/linux-libre-4.1-x86_64.conf: New files.
* Makefile.am (KCONFIGS): Add them.
* gnu/packages/linux.scm (linux-libre-4.1): New variable.
2016-02-02 03:12:29 -05:00
Mark H Weaver 17db07061f gnu: linux-libre: Generalize 'kernel-config' to support variants.
* gnu/packages/linux.scm (kernel-config): Rewrite to support optional
  #:variant keyword argument.
2016-02-02 03:12:29 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1.
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
2016-02-01 23:47:35 -05:00
Leo Famulari 4efc8eb275 gnu: Update socat to 1.7.3.1.
* gnu/packages/networking.scm (socat): Update to 1.7.3.1.
2016-02-01 19:00:39 -05:00
Leo Famulari 2c5e497672 gnu: keepassx: Update to 2.0.1.
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.1.
2016-02-01 18:26:41 -05:00
Eric Bavier 6009df6391 gnu: ccache: Update to 3.2.4.
* gnu/packages/ccache.scm (ccache): Update to 3.2.4.
2016-02-01 15:01:20 -06:00
Ludovic Courtès efdcb6f29c install: Make it clear that we refer to the root by label.
* gnu/system/install.scm (installation-os): Use (title 'label) for the
root file system.
2016-02-01 08:59:13 +01:00
Eric Bavier e3f755f44c gnu: Add pinball.
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
2016-01-31 23:46:30 -06:00
Efraim Flashner 917708c276 gnu: python-apsw: Update to 3.9.2-r1.
* gnu/packages/python.scm (python-apsw): Update to 3.9.2-r1.
[source]: Change to pypi uri syntax.
2016-02-01 06:18:58 +02:00
Efraim Flashner 55ba649dfb gnu: wayland: Build documentation.
* gnu/packages/freedesktop.scm (wayland)[native-inputs]: Add graphviz.
2016-02-01 06:18:58 +02:00
Efraim Flashner f1d9231d9a gnu: python-pillow: Update to 3.1.0.
* gnu/packages/python.scm (python-pillow): Update to 3.1.0.
[source]: Change to pypi uri syntax.
2016-02-01 06:18:58 +02:00
David Thompson 2a068aecbf gnu: Add aseprite.
* gnu/packages/game-development.scm (aseprite): New variable.
2016-01-31 15:44:20 -05:00
David Thompson 154f6156c0 gnu: Add allegro-4.
* gnu/packages/game-development.scm (allegro-4): New variable.
2016-01-31 15:44:19 -05:00
David Thompson d1a0bba029 gnu: obs: Update to 0.13.0.
* gnu/packages/video.scm (obs): Upgrade to 0.13.0.
2016-01-31 15:32:18 -05:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033.
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
2016-01-31 14:36:08 +02:00
宋文武 39eefcee97 gnu: weechat: Update to 1.4.
* gnu/packages/weechat.scm (weechat): Update to 1.4.
2016-01-31 17:12:46 +08:00
Efraim Flashner 692bb77da9 gnu: pumpa: Update to 0.9.2.
* gnu/packages/pumpio.scm (pumpa): Update to 0.9.2.
[source]: Add 'file-name' field.
2016-01-30 22:39:05 +02:00
Alex Kost 171a0a13a4 Rename 'dmd' to 'shepherd' in comments and strings.
* build-aux/hydra/demo-os.scm (operating-system)[issue]: Point to
  shepherd instead of dmd.
* ROADMAP: Likewise.
* gnu/build/install.scm (directives): Adjust comment.
2016-01-29 20:21:54 +03:00
Alex Kost d4053c710b services: Rename 'dmd' services to 'shepherd'.
* gnu/services/shepherd.scm (dmd-root-service-type, %dmd-root-service)
  (dmd-service-type, <dmd-service>, dmd-service, dmd-service?)
  (make-dmd-service, dmd-service-documentation, dmd-service-provision)
  (dmd-service-requirement, dmd-service-respawn, dmd-service-start)
  (dmd-service-stop, dmd-service-auto-start?, dmd-service-modules)
  (dmd-service-imported-modules, dmd-service-file-name, dmd-service-file)
  (dmd-service-back-edges): Rename to...
  (shepherd-root-service-type, %shepherd-root-service, shepherd-service-type)
  (<shepherd-service>, shepherd-service, shepherd-service?)
  (make-shepherd-service, shepherd-service-documentation)
  (shepherd-service-provision, shepherd-service-requirement)
  (shepherd-service-respawn, shepherd-service-start)
  (shepherd-service-stop, shepherd-service-auto-start?)
  (shepherd-service-modules, shepherd-service-imported-modules)
  (shepherd-service-file-name, shepherd-service-file)
  (shepherd-service-back-edges): ...this
* gnu/services.scm: Adjust comments.
* gnu/services/avahi.scm (avahi-dmd-service): Rename to...
  (avahi-shepherd-service): ... this.
* gnu/services/base.scm (%root-file-system-dmd-service)
  (file-system->dmd-service-name, mapped-device->dmd-service-name)
  (dependency->dmd-service-name, file-system-dmd-service)
  (mingetty-dmd-service, nscd-dmd-service, guix-dmd-service)
  (guix-publish-dmd-service, udev-dmd-service, gpm-dmd-service): Rename to...
  (%root-file-system-shepherd-service)
  (file-system->shepherd-service-name, mapped-device->shepherd-service-name)
  (dependency->shepherd-service-name, file-system-shepherd-service)
  (mingetty-shepherd-service, nscd-shepherd-service, guix-shepherd-service)
  (guix-publish-shepherd-service, udev-shepherd-service)
  (gpm-shepherd-service): ... this.
* gnu/services/databases.scm (postgresql-dmd-service): Rename to...
  (postgresql-shepherd-service): ... this.
* gnu/services/desktop.scm (upower-dmd-service, elogind-dmd-service):
  Rename to...
  (upower-shepherd-service, elogind-shepherd-service): ... this.
* gnu/services/dbus.scm (dbus-dmd-service): Rename to...
  (dbus-shepherd-service): ... this.
* gnu/services/lirc.scm (lirc-dmd-service): Rename to...
  (lirc-shepherd-service): ... this.
* gnu/services/mail.scm (dovecot-dmd-service): Rename to...
  (dovecot-shepherd-service): ... this.
* gnu/services/networking.scm (ntp-dmd-service, tor-dmd-service)
  (bitlbee-dmd-service, wicd-dmd-service, network-manager-dmd-service): Rename to...
  (dbus-shepherd-service): ... this.
* gnu/services/ssh.scm (lsh-dmd-service): Rename to...
  (lsh-shepherd-service): ... this.
* gnu/services/web.scm (nginx-dmd-service): Rename to...
  (nginx-shepherd-service): ... this.
* gnu/services/xorg.scm (slim-dmd-service): Rename to...
  (slim-shepherd-service): ... this.
* gnu/system.scm (essential-services): Use '%shepherd-root-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust accordingly.
* guix/scripts/system.scm (dmd-service-node-label, dmd-service-node-type)
  (export-dmd-graph): Likewise.
* tests/guix-system.sh: Likewise.
* tests/services.scm ("dmd-service-back-edges"): Rename to...
  ("shepherd-service-back-edges"): Adjust accordingly.
* doc/guix.texi: Likewise.
* doc/images/service-graph.dot: Use 'shepherd' service name.
2016-01-29 20:21:53 +03:00
Alex Kost 26b94866ad services: xorg: Use 'shepherd' instead of 'dmd'.
* gnu/services/xorg.scm (slim-configuration-dmd): Rename to...
  (slim-configuration-shepherd): ... this.
  (slim-shepherd-service): Adjust accordingly.
  (slim-service): Take 'shepherd' keyword argument.
2016-01-29 20:21:53 +03:00
Alex Kost fe1ad5f5db services: shepherd: Rename shepherd configuration file.
* gnu/services/shepherd.scm (dmd-configuration-file): Rename to...
  (shepherd-configuration-file): ... this.  Use "shepherd.conf" name.
  (dmd-boot-gexp): Use it.
2016-01-29 20:21:53 +03:00
Alex Kost 0190c1c02f Rename (gnu services dmd) to (gnu services shepherd).
* gnu/services/dmd.scm: Rename to...
* gnu/services/shepherd.scm: ... this.
* gnu/system.scm: Use it.
* gnu/system/install.scm: Likewise.
* gnu/services/xorg.scm: Likewise.
* gnu/services/web.scm: Likewise.
* gnu/services/ssh.scm: Likewise.
* gnu/services/networking.scm: Likewise.
* gnu/services/mail.scm: Likewise.
* gnu/services/lirc.scm: Likewise.
* gnu/services/desktop.scm: Likewise.
* gnu/services/dbus.scm: Likewise.
* gnu/services/databases.scm: Likewise.
* gnu/services/base.scm: Likewise.
* gnu/services/avahi.scm: Likewise.
* guix/scripts/system.scm: Likewise.
* tests/services.scm: Likewise.
* tests/guix-system.sh: Likewise.
* doc/guix.texi (Shepherd Services): Adjust accordingly.
* gnu-system.am (GNU_SYSTEM_MODULES): Likewise.
* po/guix/POTFILES.in: Likewise.
2016-01-29 20:21:53 +03:00
Alex Kost b8c02c18b4 Rename '/root/etc/dmd' directory and 'do-not-kill' file.
* gnu/services/base.scm (%do-not-kill-file): Rename to
  "/etc/shepherd/do-not-kill".
* gnu/build/linux-boot.scm (mount-root-file-system): Rename
  "/root/etc/dmd" to "/root/etc/shepherd".
2016-01-29 20:20:19 +03:00
Alex Kost 34044d551f Use 'shepherd' instead of 'dmd' as init system.
* gnu/services/dmd.scm (dmd-boot-gexp): Use binary from 'shepherd' package.
  (dmd-root-service-type): Use 'shepherd' package.
  (%default-modules): Use (shepherd service) module.
* gnu/services/base.scm (%root-file-system-dmd-service): Use
  'stop-logging' procedure to close shepherd log.
2016-01-29 12:07:32 +03:00
Alex Kost d312a8328d gnu: elogind: Use 'shepherd' input.
* gnu/packages/freedesktop.scm (elogind)[inputs]: Replace 'dmd' with
  'shepherd'.
2016-01-29 12:07:32 +03:00
Federico Beffa 13fe4891fa gnu: emacs: Find packages in "~/.guix-profile".
* gnu/packages/emacs.scm (emacs)[inputs]: Add 'guix-src' input.
  [arguments]: Add 'install-site-start' phase.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-01-29 11:13:15 +03:00
Alex Kost 2c776157ad gnu: guix: Update development snapshot to c3f29bc.
* gnu/packages/package-management.scm (guix-devel): Update to c3f29bc.
2016-01-29 11:13:15 +03:00
Rene Saavedra c3f29bc928 gnu: Add gtk-vnc.
* gnu/packages/gnome.scm (gtk-vnc): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-01-29 08:36:07 +08:00
Efraim Flashner f88f0d20e4 gnu: ffmpeg: Add hardware acceleration, opengl support.
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libvdpau, libx11, mesa.
[arguments]: Add configure-flags '--enable-opengl' '--enable-x11grab'.
2016-01-28 18:14:58 +02:00
Leo Famulari 03675cad53 gnu: icedtea-7: Update to 2.6.4.
Fixes CVE-2015-{7575, 8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483,
0494}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.4.
2016-01-28 08:48:35 -05:00
Leo Famulari 559239af7a gnu: icedtea-6: Update to 1.13.10.
Fixes CVE-2015-{8126, 8472} and CVE-2016-{0402, 0448, 0466, 0483, 0494}.

* gnu/packages/java.scm (icedtea-6): Update to 1.13.10.
2016-01-28 08:48:35 -05:00
Mark H Weaver 593c366bde Merge branch 'core-updates' 2016-01-28 07:29:13 -05:00
Ludovic Courtès 133056bd74 gnu: shepherd: Update to 0.3.
* gnu/packages/admin.scm (shepherd): Update to 0.3.
2016-01-28 11:45:03 +01:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs.
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
2016-01-28 00:34:20 -05:00
Ludovic Courtès 9a8b9eb8de services: guix: Provide Guix via 'profile-service-type'.
* gnu/services/base.scm (guix-service-type): Extend
PROFILE-SERVICE-TYPE.
* gnu/system.scm (%base-packages): Remove GUIX.
2016-01-27 15:48:35 +01:00
Ludovic Courtès c273d81bfa services: dmd: Provide dmd via 'profile-service-type'.
* gnu/services/dmd.scm (dmd-root-service-type): Extend
PROFILE-SERVICE-TYPE.
* gnu/system.scm (%base-packages): Remove dmd.
2016-01-27 15:48:35 +01:00
Ludovic Courtès e932d371e5 gnu: Add snapshot of the GNU Shepherd.
* gnu/packages/admin.scm (shepherd): New variable.
2016-01-27 15:48:35 +01:00
Ben Woodcroft d114ceebac gnu: Add ruby-http-cookie.
* gnu/packages/ruby.scm (ruby-http-cookie): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 5799aadde4 gnu: Add ruby-domain-name.
* gnu/packages/ruby.scm (ruby-domain-name): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 3b44bcdfcd gnu: Add ruby-unf.
* gnu/packages/ruby.scm (ruby-unf): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 6f390716b6 gnu: Add ruby-shoulda.
* gnu/packages/ruby.scm (ruby-shoulda): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 3885c58b25 gnu: Add ruby-shoulda-matchers-2.
* gnu/packages/ruby.scm (ruby-shoulda-matchers-2): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft e4fea00896 gnu: Add ruby-shoulda-matchers.
* gnu/packages/ruby.scm (ruby-shoulda-matchers): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 4dfa39cc67 gnu: Add ruby-shoulda-context.
* gnu/packages/ruby.scm (ruby-shoulda-context): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 4fea500bb1 gnu: Add ruby-sqlite3.
* gnu/packages/ruby.scm (ruby-sqlite3): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft d39b606c88 gnu: Add ruby-mime-types.
* gnu/packages/ruby.scm (ruby-mime-types): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft eb5e0bd96e gnu: Add ruby-fivemat.
* gnu/packages/ruby.scm (ruby-fivemat): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 32d1c06ffa gnu: Add ruby-mime-types-data.
* gnu/packages/ruby.scm (ruby-mime-types-data): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft e582fa93a8 gnu: Add ruby-minitest-rg.
* gnu/packages/ruby.scm (ruby-minitest-rg): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft e07ef1d625 gnu: Add ruby-minitest-bonus-assertions.
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 685d0d2fbe gnu: Add ruby-minitest-moar.
* gnu/packages/ruby.scm (ruby-minitest-moar): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 99fc5cd577 gnu: Add ruby-minitest-pretty-diff.
* gnu/packages/ruby.scm (ruby-minitest-pretty-diff): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 39dc0eb502 gnu: Add ruby-minitest-focus.
* gnu/packages/ruby.scm (ruby-minitest-focus): New variable.
2016-01-28 00:08:32 +10:00
Ben Woodcroft 8092e33376 gnu: Add ruby-turn.
* gnu/packages/ruby.scm (ruby-turn): New variable.
2016-01-28 00:08:32 +10:00
Efraim Flashner f66842dccc gnu: Add aria2.
* gnu/packages/bittorrent.scm (aria2): New variable.
2016-01-27 14:39:31 +02:00
Efraim Flashner cd44f1c1b0 gnu: c-ares: Move to adns.scm.
* gnu/packages/aria2.scm (c-ares): Move to...
* gnu/packages/adns.scm (c-ares): ... here.
* gnu/packages/aria2.scm: Remove file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove aria2.scm.
2016-01-27 14:13:45 +02:00
Andreas Enge bb2120cd1d gnu: libressl: Update to 2.2.5.
* gnu/packages/tls.scm (libressl): Update to 2.2.5.
2016-01-26 21:40:35 +01:00
Leo Famulari 7432386adb gnu: nginx: Update to 1.8.1 [fixes CVE-2016-{0742,0746,0747}].
* gnu/packages/web.scm (nginx): Update to 1.8.1.
2016-01-26 15:27:58 -05:00
Ricardo Wurmus 61eecd71cc gnu: alsa-modular-synth: Update to 2.1.2.
* gnu/packages/audio.scm (alsa-modular-synth): Update to 2.1.2.
2016-01-26 18:46:54 +01:00
Andreas Enge a394c60aa3 gnu: hop: Add input avahi.
gnu/packages/scheme.scm (hop)[inputs]: Add avahi.
2016-01-26 15:10:23 +01:00
Ben Woodcroft edf8caae6d gnu: Add ruby-ttfunk.
* gnu/packages/ruby.scm (ruby-ttfunk): New variable.
2016-01-26 16:27:40 +10:00
Ben Woodcroft acb6be4298 gnu: Add ruby-ascii85.
* gnu/packages/ruby.scm (ruby-ascii85): New variable.
2016-01-26 16:25:11 +10:00
Ben Woodcroft f3e085a8d5 gnu: Add ruby-afm.
* gnu/packages/ruby.scm (ruby-afm): New variable.
2016-01-26 16:22:17 +10:00
Ben Woodcroft 1f1d71e09f gnu: Add ruby-rc4.
* gnu/packages/ruby.scm (ruby-rc4): New variable.
2016-01-26 16:21:05 +10:00
Ben Woodcroft 72ccbfe314 gnu: Add ruby-hashery.
* gnu/packages/ruby.scm (ruby-hashery): New variable.
2016-01-26 16:19:41 +10:00
Ben Woodcroft 0832804ed5 gnu: Add ruby-rubytest-cli.
* gnu/packages/ruby.scm (ruby-rubytest-cli): New variable.
2016-01-26 16:17:01 +10:00
Ben Woodcroft 78bb471f37 gnu: Add ruby-lemon.
* gnu/packages/ruby.scm (ruby-lemon): New variable.
2016-01-26 16:15:24 +10:00
Ben Woodcroft 9273ee8f44 gnu: Add ruby-ae.
* gnu/packages/ruby.scm (ruby-ae): New variable.
2016-01-26 16:11:49 +10:00
Ben Woodcroft 120fc74b21 gnu: Add ruby-qed.
* gnu/packages/ruby.scm (ruby-qed): New variable.
2016-01-26 16:06:10 +10:00
Ben Woodcroft 90fcedf220 gnu: Add ruby-brass.
* gnu/packages/ruby.scm (ruby-brass): New variable.
2016-01-26 16:02:15 +10:00
Ben Woodcroft 7c8131c76b gnu: Add ruby-rubytest.
* gnu/packages/ruby.scm (ruby-rubytest): New variable.
2016-01-26 15:59:39 +10:00
Ben Woodcroft a78d62f432 gnu: sra-tools: Update to 2.5.7.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
2016-01-26 10:59:13 +10:00
Ben Woodcroft fe91666b79 gnu: ncbi-vdb: Update to 2.5.7.
gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
2016-01-26 10:59:13 +10:00
Ben Woodcroft d3b39bc231 gnu: ngs-sdk: Update to 1.2.3.
gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
2016-01-26 10:59:13 +10:00
Andreas Enge 46854e99ca gnu: webkitgtk-2.4, webkitgtk/gtk+-2, qt: Disable parallel builds.
* gnu/packages/webkit.scm (webkitgtk-2.4, webkitgtk/gtk+-2):
  Disable parallel builds as suggested in
  https://lists.gnu.org/archive/html/guix-devel/2016-01/msg00837.html .
* gnu/packages/qt.scm (qt): Likewise.
2016-01-25 23:33:54 +01:00
Alex Kost 0833d0c025 gnu: aspell-dict-en: Update to 2016.01.19-0.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
2016-01-25 22:11:47 +03:00
Efraim Flashner 8581f4c195 gnu: Add python-efl.
* gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
2016-01-25 11:41:23 +02:00
Efraim Flashner 2259442b15 gnu: cmocka: New variable.
* gnu/packages/check.scm (cmocka): New variable.
2016-01-25 11:39:42 +02:00
Ben Woodcroft 23f3cbb8de gnu: Add pixz.
* gnu/packages/compression.scm (pixz): New variable.
2016-01-25 18:45:33 +10:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ludovic Courtès f6afc48008 gnu: grue-hunter: Use 'https' URL.
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
2016-01-25 00:11:22 +01:00
Ben Woodcroft bcadaf0050 gnu: Add sortmerna.
* gnu/packages/bioinformatics.scm (sortmerna): New variable.
2016-01-25 08:35:11 +10:00
Andreas Enge 447f3ae7c1 gnu: calibre: Update to 2.49.0.
* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
2016-01-24 20:12:05 +01:00
Ricardo Wurmus 541ed7b030 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
2016-01-24 14:25:20 +01:00
Ricardo Wurmus a763ce7da9 gnu: Add Qtractor.
* gnu/packages/music.scm (qtractor): New variable.
2016-01-24 14:20:52 +01:00
Ricardo Wurmus 8ddc5d5723 gnu: yoshimi: Update to 1.3.8.2.
* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
2016-01-24 14:19:29 +01:00
Efraim Flashner 6b6a62dd05 gnu: privoxy: Update to 3.0.24.
* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
2016-01-24 09:20:55 +02:00
Efraim Flashner be866fb13e gnu: tor: Update to 0.2.7.6.
* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
2016-01-24 07:21:33 +02:00
Efraim Flashner 17206f72ed gnu: myrepos: Update to 1.20160123.
* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
2016-01-24 07:04:05 +02:00
Efraim Flashner 4c73302739 gnu: nano: Update to 2.5.1.
* gnu/packages/nano.scm (nano): Update to 2.5.1.
2016-01-24 06:46:01 +02:00
Mark H Weaver c5184468f5 build: container: Make 'unprivileged-user-namespace-supported?' more robust.
* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only
  read and check the first character, to cope with a possible newline in the
  (pseudo-)file.
2016-01-23 18:44:03 -05:00
Leo Famulari fe17fb4a2c gnu: letsencrypt and acme: Update to 0.2.0.
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
2016-01-23 17:39:08 -05:00
Efraim Flashner 21565719e5 gnu: claws-mail: Update to 3.13.2.
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
2016-01-23 20:13:31 +02:00
Ricardo Wurmus 3a40a92c73 gnu: Add cufflinks.
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
2016-01-23 09:15:11 +01:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat.
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-23 08:53:10 +01:00
Ricardo Wurmus 3062d750b4 gnu: star: Update to 2.5.1b.
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
2016-01-23 08:40:14 +01:00
Ricardo Wurmus c0266e8d03 gnu: star: Use "modify-phases" syntax.
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
  syntax.
2016-01-23 08:40:14 +01:00
Efraim Flashner ebf89f134c gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].
* gnu/packages/linux.scm (fuse): Update to 2.9.5.
2016-01-22 09:00:34 +02:00
宋文武 6871628999 gnu: mozjs: Make milestone.pl compatible with Perl 5.22+.
* gnu/packages/gnuzilla.scm (mozjs, mozjs-24)[source]: Add snippet.
2016-01-22 14:42:10 +08:00
Eric Bavier b6d937d99e gnu: american-fuzzy-lop: Update to 1.96b.
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b.
  [arguments]: Create symbolic link to custom qemu, rather than copying.
2016-01-21 23:54:48 -06:00
Eric Bavier 2d8211ab30 gnu: american-fuzzy-lop: Fix qemu configure flags.
Fixes regression introduced in 06da1a6.

* gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited
  #:configure-flags.
2016-01-21 23:54:48 -06:00
Eric Bavier 1022da10e1 gnu: texi2html: Disable tests.
* gnu/packages/texinfo.scm (texi2html): New 'arguments' field.
2016-01-21 22:09:42 -06:00
Leo Famulari 765973cd65 gnu: Add iftop.
* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 20:21:19 -05:00
Leo Famulari c2af02602a Revert "gnu: Add iftop."
This reverts commit 45da8c6dd1.
2016-01-21 20:11:21 -05:00
Leo Famulari 45da8c6dd1 gnu: Add iftop.
* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 18:11:12 -05:00
Ludovic Courtès 6b779207ee system: grub: Search root device by label or UUID if possible.
Fixes <http://bugs.gnu.org/22281>.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.

* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter.  Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter.  Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
2016-01-22 00:02:52 +01:00
Mark H Weaver 3738d8700f gnu: ffmpeg: Update to 2.8.5.
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-21 10:30:21 -05:00
Mark H Weaver 0c0207a93b gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].
* gnu/packages/messaging.scm (gajim): Update to 0.16.5.
  [arguments]: Disable tests.
2016-01-21 10:24:44 -05:00
Ricardo Wurmus 6c92d8dd35 gnu: bind-utils: Build and install "nsupdate".
* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install
  "nsupdate" executable.
2016-01-21 15:53:35 +01:00
Ricardo Wurmus bd0eb6672b gnu: bind-utils: Generalize "build" and "install" phases.
* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and
  "install" phases.
2016-01-21 15:53:35 +01:00
Ricardo Wurmus b2844d8f14 gnu: bind-utils: Use "modify-phases" syntax.
* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
2016-01-21 15:53:35 +01:00
Pjotr Prins 897092875e gnu: r-qtl: Update to 1.38-4.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
2016-01-21 11:16:12 +01:00
Mark H Weaver 1207a0c33e gnu: libxmp: Update to 4.3.10.
* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
2016-01-21 00:44:46 -05:00
Mark H Weaver 86fa2ea92f gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
  gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
  gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
  [source]: Add patches.
2016-01-21 00:30:15 -05:00
Eric Bavier 7ed0145712 gnu: Add NQC.
* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20 22:06:27 -06:00
Leo Famulari feb767b23c gnu: Add transmission-remote-cli.
* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
2016-01-20 20:19:46 -05:00
Eric Bavier a2190cccc2 gnu: Add dependencies on Perl modules as needed.
This is a follow-on to bb8afbf5.

* gnu/packages/language.scm (perl-lingua-en-inflect, perl-lingua-stem)
  (perl-snowball-norwegian, perl-snowball-swedish): Add 'native-inputs'
  field.
* gnu/packages/perl.scm (perl-aliased, perl-class-accessor-chained)
  (perl-datetime-set, perl-datetime-format-ical, perl-datetime-locale)
  (perl-error, perl-module-runtime, perl-module-runtime-conflicts)
  (perl-path-class, perl-posix-strftime-compiler, perl-readonly)
  (perl-test-differences, perl-test-pod, perl-test-trap)
  (perl-text-aligner, perl-text-glob, perl-text-table, perl-tie-ixhash)
  (perl-time-mock): Ditto.
  (perl-config-any): Add 'propagated-inputs' field.
  (perl-data-page, perl-datetime, perl-datetime-format-natural)
  (perl-moosex-getopt, perl-moosex-role-parameterized)
  (perl-moosex-types, perl-namespace-autoclean, perl-params-validate)
  (perl-tree-simple-visitorfactory)[native-inputs]: Add PERL-MODULE-BUILD.
  (perl-file-changenotify)[native-inputs]: Ditto.
  [propagated-inputs]: Add PERL-MODULE-PLUGGABLE.
  (perl-datetime-format-flexible, perl-test-writevariants)
  [propagated-inputs]: Ditto.
  (perl-test-mockobject): Add 'arguments' field.
* gnu/packages/mail.scm (perl-email-abstract)[propagated-inputs]: Ditto.
* gnu/packages/web.scm (perl-datetime-format-http, perl-io-socket-ip)
  (perl-plack-middleware-methodoverride, perl-uri-find)
  (perl-www-mechanize): Add 'native-inputs' field.
  (perl-html-template, perl-http-server-simple): Add 'propagated-inputs'
  field.
  (perl-apache-logformat-compiler, perl-html-tree)[native-inputs]:
  Add PERL-MODULE-BUILD.
  (perl-catalyst-runtime)[propagated-inputs]: Add PERL-MODULE-PLUGGABLE.
  (perl-finance-quote)[propagated-inputs]: Add PERL-CGI.
2016-01-20 17:45:31 -06:00
Eric Bavier 97b07aaa41 gnu: Add perl-module-pluggable.
This Perl module was moved out of Perl core in v5.19.0.

* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-20 17:45:31 -06:00
Eric Bavier 7b158c4ee2 gnu: Add perl-cgi.
The CGI module was removed from Perl core in v5.21.0.

* gnu/packages/web.scm (perl-cgi): New variable.
2016-01-20 17:45:31 -06:00
Ludovic Courtès 893106cbbf services: avahi: Export service type.
* gnu/services/avahi.scm: Export 'avahi-service-type'.
2016-01-21 00:22:34 +01:00
Mark H Weaver 80b64ee2d8 gnu: isc-dhcp: Update bundled bind to 9.9.8-P3 [fixes CVE-2015-8704].
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P3.
2016-01-20 14:58:40 -05:00
Mark H Weaver d912db5bc0 gnu: bind-utils: Update to 9.10.3-P3 [fixes CVE-2015-8704].
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P3.
2016-01-20 14:57:06 -05:00
Mark H Weaver beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728.
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
2016-01-20 13:23:42 -05:00
David Thompson d4df203292 gnu: obs: Add support for webcams.
* gnu/packages/video.scm (obs)[inputs]: Add v4l-utils.
2016-01-20 11:46:45 -05:00
David Thompson 945d985aab gnu: Add v4l-utils.
* gnu/packages/video.scm (v4l-utils): New variable.
2016-01-20 11:46:45 -05:00
Andreas Enge f32ee38fcd gnu: arb: Correct patch.
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
2016-01-20 16:57:17 +01:00
Andreas Enge ffc8f34511 gnu: arb: Update to 2.8.1.
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
2016-01-20 16:33:34 +01:00
Andreas Enge 05944b3aa6 gnu: doxygen: Drop propagated input graphviz.
* gnu/packages/doxygen.scm (doxygen)[propagated-inputs]: Drop graphviz.
2016-01-20 13:23:25 +01:00
Andreas Enge 7c853c02b8 gnu: doxygen: Update to 1.8.11.
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
  Drop one patch.
  [build-system]: Switch to cmake-build-system, since gnu-build-system
  is not supported any more.
  [arguments]: Adapt.
  [native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
2016-01-20 13:19:48 +01:00
Efraim Flashner 4c3d2b2a8f gnu: enlightenment: Update to 0.20.3.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.3.
2016-01-20 12:37:21 +02:00
Efraim Flashner 0568dbabe0 gnu: libshout: Update to 2.4.1.
* gnu/packages/xiph.scm (libshout): Update to 2.4.1.
2016-01-20 02:12:23 +02:00
Efraim Flashner 1c3d37e648 gnu: opusfile: Update to 0.7.
* gnu/packages/xiph.scm (opusfile): Update to 0.7.
2016-01-20 02:12:23 +02:00
Efraim Flashner 275cc09280 gnu: opus: Update to 1.1.2.
* gnu/packages/xiph.scm (opus): Update to 1.1.2.
2016-01-20 02:12:23 +02:00
Ludovic Courtès 55ca5e8095 gnu: lilypond: Double 'max-silent-time'.
Suggested by Mark H Weaver <mhw@netris.org>.

* gnu/packages/music.scm (lilypond)[properties]: New field.
2016-01-19 22:14:15 +01:00
Christopher Allan Webber 16966d5b4d gnu: fdm: Adjust license link to point to web-accessible copy of command.c
* gnu/packages/mail.scm (fdm): Adjusted license field
2016-01-19 07:54:18 -08:00
Christopher Allan Webber 34dd26af49 gnu: Add fdm.
* gnu/packages/mail.scm (fdm): New variable.
2016-01-18 21:51:45 -08:00
Mark H Weaver afe9f40949 Merge branch 'master' into core-updates 2016-01-19 00:18:37 -05:00
Christopher Allan Webber 1348185ac2 gnu: Add linux-libre-4.2.5
* gnu/packages/linux.scm (linux-libre-4.2.5): New variable.
2016-01-18 15:10:38 -08:00
Efraim Flashner 26da7c2606 gnu: mpv: Update to 0.15.0.
* gnu/packages/video.scm (mpv): Update to 0.15.0.
2016-01-18 22:26:56 +02:00
Alex Kost 60edbe2297 gnu: magit: Update to 2.4.0.
* gnu/packages/emacs.scm (magit): Update to 2.4.0.
2016-01-18 22:40:33 +03:00
Alex Kost d44d60d211 gnu: sxiv: Update to 1.3.2.
* gnu/packages/sxiv.scm (sxiv): Update to 1.3.2.
2016-01-18 22:40:33 +03:00
Alex Kost 4c896c9195 gnu: manaplus: Update to 1.6.1.16.
* gnu/packages/games.scm (manaplus): Update to 1.6.1.16.
2016-01-18 22:40:33 +03:00
Efraim Flashner 264ae686fa python2-jsonschema: Add python2-functools32 to inputs.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Add
python2-functools32.
(python2-wheel)[native-inputs]: Specify python2-jsonschema. Add
python2-functools32.
(python2-requests)[propagated-inputs]: Specify python2-wheel.
(python2-ipython)[inputs]: Specify python2-jsonschema, python2-requests.
(python2-rauth)[propagated-inputs]: Specify python2-requests.
* gnu/packages/openstack.scm (python2-requests-mock)[propagated-inputs]:
Specify python2-requests.
(python2-tempest-lib)[propagated-inputs]: Specify python2-jsonschema.
(python2-oslosphinx)[propagated-inputs]: Specify python2-requests.
(python2-keystoneclient)[porpagated-inputs]: Specify python2-requests.
[native-inputs]: Specify python2-oslosphinx, python2-requests-mock,
python2-tempest-lib.
(python2-swiftclient)[propagated-inputs]: Specify python2-requests,
python2-oslosphinx.
2016-01-18 17:23:37 +02:00
Efraim Flashner 058247efff gnu: datamash: Update to 1.1.0.
* gnu/packages/datamash.scm (datamash): Update to 1.1.0.
2016-01-18 12:14:20 +02:00
Mark H Weaver 8047d13dcf gnu: mariadb: Update to 10.0.23.
* gnu/packages/databases.scm (mariadb): Update to 10.0.23.
2016-01-18 01:43:07 -05:00
Mark H Weaver 51a277d8e8 gnu: rsync: Update to 3.1.2.
* gnu/packages/rsync.scm (rsync): Update to 3.1.2.
2016-01-17 21:44:31 -05:00
Ricardo Wurmus e8309291a7 gnu: solfege: Build scores with Lilypond.
* gnu/packages/music.scm (solfege)[inputs]: Add "lilypond".
2016-01-17 22:57:58 +01:00
Ricardo Wurmus 18ef998bfc gnu: bristol: Remove SSE flags on platforms other than x86_64 and i686.
* gnu/packages/music.scm (bristol)[arguments]: Add phase
"remove-sse-flags" to remove unsupported optimizations on platforms
other than x86_64 and i686.
2016-01-17 22:57:58 +01:00
Ludovic Courtès b153f9f0a9 linux-initrd: Remove "usbkbd" from the default set of modules.
Reported by Ricardo Wurmus <rekado@elephly.net>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20433#39>.

* gnu/system/linux-initrd.scm (base-initrd): Remove "usbkbd".
2016-01-17 22:01:47 +01:00
Efraim Flashner e8d2168c27 gnu: Add git-annex-remote-hubic.
* gnu/packages/version-control.scm (git-annex-remote-hubic): New variable.
2016-01-17 22:37:04 +02:00
Efraim Flashner c18f636823 gnu: Add python-urllib3.
* gnu/packages/python.scm (python-urllib3, python2-urllib3): New variables.
2016-01-17 22:37:04 +02:00
Efraim Flashner e1ba074999 gnu: python-wheel: Clarify description.
* gnu/packages/python.scm (python-wheel): Do it.
2016-01-17 22:37:04 +02:00
Efraim Flashner 10468636ff gnu: python-pytest-cov: Clarify description.
* gnu/packages/python.scm (python-pytest-cov): Do it.
2016-01-17 22:37:04 +02:00
Efraim Flashner 1abe448d56 gnu: Add python2-functools32.
* gnu/packages/python.scm (python2-functools32): New variable.
2016-01-17 22:37:04 +02:00
Efraim Flashner 5988c299c4 gnu: Add python-pyasn1-modules.
* gnu/packages/python.scm (python-pyasn1-modules)
(python2-pyasn1-modules): New variables.
2016-01-17 22:37:04 +02:00
Efraim Flashner 81f7f29752 gnu: Add python-rauth.
* gnu/packages/python.scm (python-rauth, python2-rauth): New variables.
2016-01-17 22:37:04 +02:00
Efraim Flashner 8f0cc2ffce gnu: Add python-swiftclient.
* gnu/packages/openstack.scm (python-swiftclient, python2-swiftclient):
New variables.
2016-01-17 22:37:04 +02:00
Efraim Flashner 7a5b944eb5 gnu: Add python-futures.
* gnu/packages/python.scm (python-futures, python2-futures): New variables.
2016-01-17 22:37:04 +02:00
Efraim Flashner c9e330d001 gnu: Add python-keystoneclient.
* gnu/packages/openstack.scm (python-keystoneclient)
(python2-keystoneclient): New variables.
2016-01-17 22:37:04 +02:00
Ricardo Wurmus fb492b9a64 gnu: vmpk: Update to 0.6.2a.
* gnu/packages/music.scm (vmpk): Update to 0.6.2a.
2016-01-17 19:57:07 +01:00
Ricardo Wurmus cfac12723a gnu: drumstick: Update to 1.0.2.
* gnu/packages/music.scm (drumstick): Update to 1.0.2.
2016-01-17 19:57:00 +01:00
Efraim Flashner 81c29cccaa gnu: mpv: Add features.
* gnu/packages/video.scm (mpv)[inputs]: Add libvdpau.
[arguments]: Add gpl3 and zsh completion flags.
2016-01-17 20:43:51 +02:00
Efraim Flashner 3161d32d37 gnu: Add vdpauinfo.
* gnu/packages/video.scm (vdpauinfo): New variable.
2016-01-17 20:43:51 +02:00
Efraim Flashner d5650f86a7 gnu: Add libvdpau.
* gnu/packages/video.scm (libvdpau): New variable.
2016-01-17 20:43:51 +02:00
Ludovic Courtès bb8afbf5a1 gnu: Add dependency on Perl's 'Module::Build' as needed.
'Module::Build' was deprecated in Perl 5.20 and removed in 5.22.
Some packages need to explicitly depend on it now.

* gnu/packages/perl.scm (perl-class-factory-util):
(perl-date-manip, perl-devel-checkbin): Add 'native-inputs' field.
(perl-module-build)[description]: Mention that it used to be in Perl.
* gnu/packages/web.scm (perl-cgi-simple)[native-inputs]: Add
PERL-MODULE-BUILD.
2016-01-17 18:41:20 +01:00
Eric Bavier 2328b47c64 gnu: Add autojump.
* gnu/packages/admin.scm (autojump): New variable.
2016-01-17 01:44:15 -06:00
Eric Bavier f5a8491b69 gnu: hevea: Update to 2.28.
* gnu/packages/ocaml.scm (hevea): Update to 2.28.
  [arguments]: Add 'patch-/bin/sh phase.
2016-01-17 01:04:43 -06:00
Eric Bavier 90907a22bc gnu: unison: Add "doc" output.
* gnu/packages/ocaml.scm (unison)[source]: Use svn-fetch with snippet.
  [outputs]: New field.
  [native-inputs]: Add ghostscript, texlive, hevea, and lynx.
  [arguments]: Add 'install-doc phase.
2016-01-17 01:04:43 -06:00
Ricardo Wurmus 2309ed6862 gnu: samtools-0.1: Adapt to changes in "samtools" variable.
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add
  "LIBCURSES" make flag; delete "configure" phase; disable tests outside
  of "substitute-keyword-arguments".
2016-01-16 15:50:51 +01:00
Ludovic Courtès 7ba903b6db linux-modules: Support 'modprobe.blacklist' on the command line.
* gnu/build/linux-modules.scm (file-name->module-name)
(module-black-list): New procedure.
* gnu/build/linux-modules.scm (load-linux-module*): Add #:black-list
parameter.
[black-listed?, load-dependencies]: New procedures.
Use them.
2016-01-16 14:45:47 +01:00
Alex Kost b8300494c0 Move <boot-parameters> to (gnu system).
* guix/scripts/system.scm (previous-grub-entries)
  (display-system-generation): Use accessors instead of matching
  <boot-parameters>.
  (boot-parameters, boot-parameters?, boot-parameters-label)
  (boot-parameters-root-device, boot-parameters-kernel)
  (boot-parameters-kernel-arguments, read-boot-parameters): Move to...
* gnu/system.scm: ... here. Export them.
2016-01-16 13:02:21 +03:00
宋文武 c3e919d7a0 gnu: Add python-hy.
* gnu/packages/python.scm (python-hy, python2-hy): New variables.
2016-01-16 08:18:37 +08:00
宋文武 e224b7d0bd gnu: Add python-rply.
* gnu/packages/python.scm (python-rply, python2-rply): New variables.
2016-01-16 08:18:37 +08:00
宋文武 4ecdeef8ae gnu: Add python-astor.
* gnu/packages/python.scm (python-astor, python2-astor): New variables.
2016-01-16 08:18:37 +08:00
宋文武 c06a3de93a gnu: Add python-clint.
* gnu/packages/python.scm (python-clint, python2-clint): New variables.
2016-01-16 08:17:04 +08:00
宋文武 2216e15cc3 gnu: Add python-args.
* gnu/packages.scm (python-args, python2-args): New variables.
2016-01-16 08:16:51 +08:00
Mark H Weaver ca3f9952d7 gnu: ffmpeg: Update to 2.8.5.
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-15 18:20:21 -05:00
Mark H Weaver 8d9bae4ed7 gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558].
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
  [source]: Remove patch.
2016-01-15 18:03:02 -05:00
Leo Famulari 78e6c4a862 gnu: Add khal.
* gnu/packages/calendar.scm (khal): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari b97c1bfd56 gnu: python-urwid: Disable failing test test_remove_watch_file.
* gnu/packages/python.scm (python-urwid)[arguments]: Add
'disable-failing-test' phase.
[source]: Use pypi-uri.
2016-01-15 16:45:24 -05:00
Leo Famulari 226d333103 gnu: Update python-tzlocal to 1.2.
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.
[source]: Use pypi-uri.
[arguments]: Remove the custom 'unpack phase.
[native-inputs]: Remove unzip, python-setuptools.
[propagated-inputs]: Add python-pytz.
2016-01-15 16:45:24 -05:00
Leo Famulari 6bbbb53eeb gnu: Add python-sphinxcontrib-newsfeed.
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 5c299bf016 gnu: Add python-icalendar.
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari a2f6a3d502 gnu: Add vdirsyncer.
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari f75bbb028a gnu: Add radicale.
* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15 16:45:24 -05:00
Leo Famulari 89b8a5516f gnu: Add python-pytest-xprocess.
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 28cecbb7cc gnu: Add python-wsgi-intercept.
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari d7e729fe08 gnu: Add python-pytest-localserver.
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 6720dbb49f gnu: Add python-pytest-cache.
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 848964fe11 gnu: Add python-execnet.
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 7b3a4ee4c3 gnu: Add python-apipkg.
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 7b17cab902 gnu: Add python-click-log.
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari d1deb90b3f gnu: Add python-click-threading.
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 561bb3cb1a gnu: Add python-requests-toolbelt.
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15 16:45:24 -05:00
Leo Famulari 5c6eea2ad1 gnu: Add python-atomicwrites.
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15 16:45:24 -05:00
Ricardo Wurmus f5ca44b86e gnu: glade: Update to 3.18.5.
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
2016-01-15 22:29:37 +01:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22.
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-15 14:23:46 +01:00
Mark H Weaver 45f2ffb48c gnu: openssh: Update to 7.1p2.
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15 02:46:12 -05:00
Mark H Weaver 1beec63ac8 Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."
This reverts commit 6d139e53b5.
2016-01-15 02:45:58 -05:00
Mark H Weaver 6d139e53b5 gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14 10:39:00 -05:00
David Thompson df1f1d6936 gnu: Add docker-compose.
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14 09:17:12 -05:00
David Thompson b42c9c8124 gnu: Add python-dockerpty.
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14 09:16:22 -05:00
David Thompson d020bfc2df gnu: Add python-docker-py.
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14 09:16:22 -05:00
David Thompson 67c52bb3e7 gnu: Add python-websocket-client.
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14 09:12:23 -05:00
David Thompson 210bf49754 gnu: Add python-texttable.
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
2016-01-14 09:12:23 -05:00
David Thompson b3667afbd2 gnu: Update python-jsonschema to 2.5.1.
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
2016-01-14 09:12:06 -05:00
David Thompson ea521b42c2 gnu: Add python-vcversioner.
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
2016-01-14 09:05:19 -05:00
David Thompson e90051808b gnu: Add version 2.7 variant of python-requests.
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14 09:05:19 -05:00
Ricardo Wurmus 3141b83d4d gnu: r-go-db: Add missing input.
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
  "r-annotationdbi".
2016-01-14 14:43:59 +01:00
Ricardo Wurmus d7786ce9b0 gnu: r-sparsem: Add missing "gfortran" input.
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14 14:43:59 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
Efraim Flashner 2d12284d38 gnu: gnupg: Add TOFU support.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14 15:05:36 +02:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test.
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-14 10:43:08 +01:00
Ben Woodcroft 6b6f7d6a0e gnu: orfm: Update to 0.5.3.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
2016-01-14 08:00:10 +10:00
Ben Woodcroft 3d84a99e73 gnu: Add ruby-bio-commandeer.
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14 08:00:02 +10:00
Ben Woodcroft 7c033c4627 gnu: Add ruby-systemu.
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-14 07:51:44 +10:00
Ricardo Wurmus ca7ef4d418 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
2016-01-13 22:32:37 +01:00
Ludovic Courtès 8c986ab120 Merge branch 'master' into core-updates 2016-01-13 18:18:48 +01:00
Ricardo Wurmus e5a19fed19 gnu: julia: Update to 0.4.3.
* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
2016-01-13 17:05:38 +01:00
Mark H Weaver 75418ae0fd gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13 09:38:57 -05:00
Ricardo Wurmus c44734115a gnu: samtools: Update to 1.3.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
2016-01-13 15:12:22 +01:00
Ludovic Courtès 98f2339189 gnu: skribilo: Update to 0.9.3.
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3.
[native-inputs]: New field.
2016-01-13 11:13:34 +01:00
Eric Bavier c91d3fb7f4 gnu: boost: Update to 1.60.0.
* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
Eric Bavier 3abe8136fd gnu: boost: Use modify-phases.
* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
2016-01-12 20:53:14 +01:00
Mark H Weaver 203795acea gnu: perl: Add fix for CVE-2015-8607.
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
2016-01-12 13:12:07 -05:00
Mark H Weaver ce3ac6670c gnu: perl: Update to 5.22.1.
* gnu/packages/perl.scm (perl): Update to 5.22.1.
2016-01-12 13:10:05 -05:00
Mark H Weaver 16aa649117 gnu: sudo: Add fix for CVE-2015-5602.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
Efraim Flashner 9d9951d6a6 gnu: global: Use modify-phases syntax.
* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax.
2016-01-12 14:47:10 +02:00
Efraim Flashner 94c3a6f1a6 gnu: global: Update to 6.5.2.
* gnu/packages/code.scm (global): Update to 6.5.2.
2016-01-12 14:39:15 +02:00
Ricardo Wurmus 9f40b1171b gnu: icedtea-6: Fix directory name in "unpack" phase.
* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
  prefix in the "unpack" phase to "icedtea6-".
2016-01-12 11:39:21 +01:00
Mark H Weaver 6b0d24b17c gnu: linux-libre: Update to 4.4.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.
* gnu/packages/linux-libre-i686.conf,
  gnu/packages/linux-libre-x86_64.conf: Update from
  <https://jxself.org/git/kernel-configs.git>.
2016-01-11 19:13:37 -05:00
Ben Woodcroft 81f3e0c1f3 gnu: Add fxtract.
* gnu/packages/bioinformatics.scm (fxtract): New variable.
2016-01-12 07:49:19 +10:00
Ben Woodcroft 65e84e3176 gnu: ruby: Update to 2.3.0.
* gnu/packages/ruby.scm (ruby): Update to 2.3.0.
[source]: Remove bundled libffi.
[arguments]: Use parallel tests.
(ruby-2.2): New variable.
2016-01-11 21:59:06 +10:00
Ben Woodcroft 9656b8bec5 gnu: ruby: Use modify-phases.
* gnu/packages/ruby.scm (ruby)[arguments]: Use modify-phases.
2016-01-11 21:59:06 +10:00
Ben Woodcroft 761e7042f6 ruby: Abstract out path to GEM_HOME.
Previously paths to the GEM_HOME of certain Ruby packages were
hard-coded, so packages failed to build when Ruby was updated to 2.3.0.

* guix/build/ruby-build-system.scm (gem-home): New procedure.
* gnu/packages/ruby.scm (ruby-metaclass, ruby-instantiator,
ruby-introspection, ruby-mocha, ruby-minitest-tu-shim): Use it.
2016-01-11 21:58:55 +10:00
Efraim Flashner ec70fec559 gnu: youtube-dl: Update to 2016.01.09.
* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
2016-01-11 13:30:50 +02:00
Andreas Enge 4879d2ff66 gnu: gp2c: Update to 0.0.9pl5.
* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
2016-01-11 11:24:52 +01:00
Andreas Enge 4a6635f353 gnu: texlive: Use modify-phases syntax.
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
  syntax.
2016-01-11 10:59:29 +01:00
Efraim Flashner a916c82649 gnu: man-pages: Update to 4.04.
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
2016-01-11 09:37:50 +02:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
Ben Woodcroft 6573ac82ad gnu: bedtools: Use modify-phases.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
2016-01-11 00:36:13 +10:00
Ben Woodcroft 048036aee5 gnu: ruby-yard: Disable failing test.
* gnu/packages/ruby.scm (ruby-yard)[arguments]: Disable test which fails on
Ruby 2.3.0.
2016-01-10 21:10:29 +10:00
Ben Woodcroft 3918146b61 gnu: ruby-power-assert: Update to 0.2.7.
* gnu/packages/ruby.scm (ruby-power-assert): Update to 0.2.7.
2016-01-10 21:09:37 +10:00
Andreas Enge 695bea9803 gnu: r: Update to 3.2.3.
* gnu/packages/statistics.scm (r): Update to 3.2.3.
2016-01-09 23:18:28 +01:00
Andreas Enge 13035f5a03 gnu: icecat: Update to 38.5.2-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
2016-01-09 22:51:28 +01:00
Ben Woodcroft 4c40fa0229 gnu: ruby-2.1: Update to 2.1.8.
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
2016-01-09 14:53:58 +10:00
Leo Famulari f32274a71e gnu: i2c-tools: Update source and home-page URLs.
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
Leo Famulari 3a04d5d4e4 gnu: lm-sensors: Update source and home-page URLs.
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
2016-01-08 15:29:50 -05:00
Ludovic Courtès 195f557ed5 gnu: attr: Update to 2.4.47.
* gnu/packages/attr.scm (attr): Update to 2.4.47.
2016-01-08 16:45:32 +01:00
Ludovic Courtès 20c620d0a4 gnu: attr: Use 'modify-phases'.
* gnu/packages/attr.scm (attr)[arguments]: Use 'modify-phases'.
2016-01-08 16:45:28 +01:00
Mathieu Lirzin 2409f37f28 gnu: Add missing (gnu packages gcc) import.
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
2016-01-08 14:18:46 +01:00
Mathieu Lirzin 9ef824c10e gnu: xterm: Update to 322.
* gnu/packages/xorg.scm (xterm): Update to 322.
2016-01-08 14:12:29 +01:00
宋文武 a65e26f091 gnu: epiphany: Update to 3.18.2.
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
2016-01-08 17:34:08 +08:00
宋文武 19e5258d84 gnu: webkitgtk: Update to 2.10.4.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
2016-01-08 17:34:08 +08:00
Efraim Flashner 209e09fa10 gnu: zlib: Update to 1.2.8.
* gnu/packages/compression.scm (zlib): Update to 1.2.8.
2016-01-08 06:39:12 +02:00
Pjotr Prins c8d969b58f gnu: Add Pfff.
* gnu/packages/textutils.scm (pfff): New variable.
2016-01-07 21:13:35 +01:00
Alex Kost fbbaa4dde8 gnu: mpv: Remove 'samba' input.
This is a heavy-weight and uncommon feature.  See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>.

* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
2016-01-07 22:30:18 +03:00
Ricardo Wurmus cb933df6da gnu: Add genomation.
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 03ea5a357e gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus c43a011de3 gnu: Add impute.
* gnu/packages/bioinformatics.scm (r-impute): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus c63cef6699 gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus fbf6045e33 gnu: Add plotly.
* gnu/packages/statistics.scm (r-plotly): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus a28d646b63 gnu: Add viridis.
* gnu/packages/statistics.scm (r-viridis): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus d547ce5e70 gnu: Add topGO.
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus e05c37da4a gnu: Add matrixStats.
* gnu/packages/statistics.scm (r-matrixstats): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 3703ffb41f gnu: Add R.rsp.
* gnu/packages/statistics.scm (r-r-rsp): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus a63efbb453 gnu: Add R.cache.
* gnu/packages/statistics.scm (r-r-cache): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 9c94b53b5b gnu: Add R.utils.
* gnu/packages/statistics.scm (r-r-utils): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus c8c75a8d88 gnu: Add R.oo.
* gnu/packages/statistics.scm (r-r-oo): New variable.
2016-01-07 17:18:17 +01:00
Ricardo Wurmus 8bfe007c9c gnu: Add R.methodsS3.
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus a69a593595 gnu: Add base64enc.
* gnu/packages/statistics.scm (r-base64enc): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus a8227e4ae9 gnu: Add DT.
* gnu/packages/statistics.scm (r-dt): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus d706257b5b gnu: Add SparseM.
* gnu/packages/statistics.scm (r-sparsem): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus fb25d8803f gnu: Add GO.db.
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 2fd7c04984 gnu: Add GenomicFeatures.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 317755ff0f gnu: Add rtracklayer.
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus d8a828af78 gnu: Add GenomicAlignments.
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6e76dda2d0 gnu: Add SummarizedExperiment.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus f8d74f7018 gnu: Add Rsamtools.
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus bf15935337 gnu: Add Biostrings.
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus e91d362e48 gnu: Add BiocParallel.
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus c465fa72ed gnu: Add biomaRt.
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 8b7bce740d gnu: Add AnnotationDbi.
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 555e3399dc gnu: Add Biobase.
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus bc899123e7 gnu: Add snow.
* gnu/packages/statistics.scm (r-snow): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6b82f56cf9 gnu: Add futile.logger.
* gnu/packages/statistics.scm (r-futile-logger): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus b9ff33b50e gnu: Add futile.options.
* gnu/packages/statistics.scm (r-futile-options): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus ca65d387fd gnu: Add lambda.r.
* gnu/packages/statistics.scm (r-lambda-r): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 543ded3619 gnu: Add r-xml.
* gnu/packages/statistics.scm (r-xml): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus cefaa79c9e gnu: Add RCurl.
* gnu/packages/statistics.scm (r-rcurl): New variable.
2016-01-07 17:18:16 +01:00
Ricardo Wurmus 21e4d6a9cf gnu: Add RSQLite.
* gnu/packages/statistics.scm (r-rsqlite): New variable.
2016-01-07 17:18:15 +01:00
Raimon Grau fe9451c50a gnu: Add xmlstarlet.
* gnu/packages/xml.scm (xmlstarlet): New variable.
2016-01-07 16:00:00 +01:00
宋文武 29e255ca83 gnu: zita-convolver: Drop the '-march=native' optimization.
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
宋文武 6dff495580 gnu: zita-resampler: Drop the '-march=native' optimization.
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
2016-01-07 22:47:32 +08:00
Ben Woodcroft 7d3a1a2dd2 gnu: Add ruby-ansi.
* gnu/packages/ruby.scm (ruby-ansi): New variable.
2016-01-07 15:36:05 +01:00
Efraim Flashner b24765139c gnu: sqlite: Update to 3.10.0.
* gnu/packages/databases.scm (sqlite): Update to 3.10.0.
2016-01-07 12:37:37 +02:00
Ricardo Wurmus 5dfd276602 gnu: edirect: Update to 3.50.
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
2016-01-07 11:25:24 +01:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers.
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'.
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0.
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
2016-01-07 08:42:15 +02:00
Ludovic Courtès d4aaf95401 build-system/gnu: Make 'package-with-explicit-inputs' idempotent.
* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
  'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
  #:guile argument.
2016-01-06 23:08:22 +01:00
Ludovic Courtès dff9141c5e gnu: guix: Update development snapshot to f888c0b.
* gnu/packages/package-management.scm (guix-devel): Update to f888c0b.
2016-01-06 23:08:22 +01:00
Efraim Flashner bfcb7bcb73 gnu: libffi: Update to 3.2.1.
* gnu/packages/libffi.scm (libffi): Update to 3.2.1.
2016-01-06 20:28:57 +02:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0.
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
2016-01-06 10:49:23 -06:00
Ludovic Courtès 7b78f359d1 gnu: sudo: Use /var/run/sudo instead of /run/sudo.
* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
2016-01-06 15:51:31 +01:00
Ludovic Courtès 3c4c8c3e06 services: cleanup-service: Catch 'system-error' instead of everything.
This makes sure that critical errors such as unbound-variable do not go
undetected.

* gnu/services.scm (cleanup-gexp): Introduce local 'fail-safe' macro and
use it.  Remove uses of 'false-if-exception'.
2016-01-06 14:49:48 +01:00
Ludovic Courtès 341ae58213 gnu: ldc: Fix license.
* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
2016-01-06 14:21:53 +01:00
Ricardo Wurmus a243e12aba gnu: icedtea7: Rename to icedtea-7.
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
2016-01-06 11:38:50 +01:00
Ricardo Wurmus d028740622 gnu: icedtea6: Rename to icedtea-6.
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
2016-01-06 11:38:50 +01:00
Ricardo Wurmus 5452588c1a gnu: icedtea6, icedtea7: Rename package to "icedtea".
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
2016-01-06 11:38:50 +01:00
Ricardo Wurmus d2540f80c2 gnu: Add and use default IcedTea.
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
2016-01-06 11:38:50 +01:00
Ricardo Wurmus d91488908b gnu: icedtea6, icedtea7: Unpack to "openjdk.src".
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
2016-01-06 11:38:50 +01:00
Ricardo Wurmus 43c565d2e7 gnu: Add Jellyfish.
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
2016-01-06 11:10:46 +01:00
Andreas Enge 7d1f8d4f52 gnu: calibre: Update to 2.48.0.
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
2016-01-05 22:46:54 +01:00
Efraim Flashner e5f037624e gnu: gettext: Use "modify-phases" syntax.
* gnu/packages/gettext.scm (gettext)[arguments]: Use "modify-phases" syntax.
2016-01-05 21:13:57 +02:00
Efraim Flashner d99861d39d gnu: gettext: Update to 0.19.7.
* gnu/packages/gettext.scm (gettext): Update to 0.19.7.
2016-01-05 21:06:59 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7.
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
2016-01-05 21:06:59 +02:00
Efraim Flashner 3ea110b704 gnu: libtasn1: Update to 4.7.
* gnu/packages/tls.scm (libtan1): Update to 4.7.
[native-inputs]: Remove texinfo.
2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC.
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
2016-01-05 16:24:57 +01:00
Ludovic Courtès e8e2e18b84 gnu: Read 'C_INCLUDE_PATH' instead of 'CPATH'.
This is a followup to 009b53fd.

* gnu/packages/cmake.scm (cmake)[arguments]: Use (getenv
"C_INCLUDE_PATH") instead of (getenv "CPATH").
* gnu/packages/package-management.scm (rpm)[arguments]: Likewise.
* gnu/packages/video.scm (avidemux)[arguments]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[arguments]: Likewise.
* gnu/packages/cross-base.scm (cross-gcc-arguments): Likewise, and unset
'C_INCLUDE_PATH' and 'CPLUS_INCLUDE_PATH'.
2016-01-05 14:11:54 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'.
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
2016-01-05 13:13:17 +01:00
Dmitry Bogatov 1075b43737 gnu: Add emacs-undo-tree.
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-01-05 00:28:42 +01:00
Ludovic Courtès fe542b9762 gnu: emacs: Remove 'info.info'.
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'.  Add
'remove-info.info' phase.
2016-01-05 00:28:42 +01:00
Ludovic Courtès fb74174958 linux-boot: Remove verbose output for module loads.
* gnu/build/linux-boot.scm (boot-system): Leave
'current-module-debugging-port' unchanged.
* gnu/build/linux-modules.scm (load-linux-module*): Update comment about
'mmap'.
2016-01-05 00:28:42 +01:00
Ludovic Courtès be7be9e8dd services: Move /tmp cleanup to a separate service.
* gnu/services.scm (compute-boot-script): Remove /tmp and /var/run
deletion code from here.
(cleanup-gexp): New procedure with /tmp and /var/run deletion code
formerly in 'compute-boot-script'.
(cleanup-service-type): New variable.
* gnu/system.scm (essential-services): Add an instance of
CLEANUP-SERVICE-TYPE.
2016-01-05 00:28:42 +01:00
Ludovic Courtès 94af9daa73 services: boot: Reinstate /tmp and /var/run deletion.
For some time /tmp and /var/run were not being deleted because
'delete-file-recursively' was unbound.

* gnu/services.scm (compute-boot-script)[%modules, modules, compiled]:
New variables.  Use them to augment the module search path.
2016-01-05 00:28:42 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH.
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH.
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
2016-01-04 16:11:10 -05:00
Efraim Flashner 4f2ca23493 gnu: libgcrypt: Update to 1.6.4.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.4.
2016-01-04 22:29:08 +02:00
Manolis Ragkousis 4478dbd58c gnu: libgpg-error: Update to 1.21.
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.21.
2016-01-04 18:23:29 +02:00
Efraim Flashner 82cb8519bc gnu: tzdata: Update to 2015g.
* gnu/packages/base.scm (tzdata): Update to 2015g.
2016-01-04 16:59:13 +02:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2.
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
2016-01-04 11:35:57 +01:00
Ricardo Wurmus 50b40d0709 gnu: Add libuv-julia.
* gnu/packages/julia.scm (libuv-julia): New variable.
2016-01-04 11:35:57 +01:00
Ricardo Wurmus f1e3a8aed2 gnu: utf8proc: Update to 1.3.1.
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
2016-01-04 11:35:57 +01:00
Leo Famulari 77553dff86 gnu: samba: Update to 4.3.3.
Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.

* gnu/packages/samba.scm (samba): Update to 4.3.3.
2016-01-03 14:59:49 -05:00
Leo Famulari f6cddbefcc gnu: ldb: Update to 1.1.24.
Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.

* gnu/packages/samba.scm (ldb): Update to 1.2.24.
2016-01-03 14:59:49 -05:00
Ludovic Courtès 53334dd6e9 Merge branch 'master' into core-updates 2016-01-03 14:53:03 +01:00
Ludovic Courtès 1575dcd134 gnu: grep: Skip timing-sensitive test.
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw>.

* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
2016-01-03 14:50:29 +01:00
Ludovic Courtès dd1937d75d gnu: pkg-config: Update to 0.29.
* gnu/packages/pkg-config.scm (%pkg-config): Update to 0.29.
2016-01-03 14:44:22 +01:00
Eric Bavier 8d0801ab23 gnu: libgc: Enable C++ support.
* gnu/packages/bdw-gc.scm (libgc-7.2, libgc)[arguments]: Add
  --enable-cplusplus to #:configure-flags.
2016-01-02 16:06:11 -06:00
Eric Bavier 209778717a gnu: Add Asymptote.
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-02 16:04:55 -06:00
Erik Edrosa b989390889 gnu: Add python-markdown.
* gnu/packages/python.scm (python-markdown, python2-markdown): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-01-02 00:07:29 -05:00
宋文武 05d48c5243 gnu: love: Update to 0.10.0.
* gnu/packages/game-development.scm (love): Update to 0.10.0.
2016-01-02 10:31:53 +08:00
Ludovic Courtès 319007c507 gnu: guile-ssh: Update to 0.9.0.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.9.0.
2016-01-01 22:59:20 +01:00
Ludovic Courtès f453f637d5 system: Allow the root file system to be named by UUID.
* gnu/build/file-systems.scm (canonicalize-device-spec)[canonical-title]:
Use 'string->uuid' to check whether SPEC is a UUID.
When SPEC is a string and CANONICAL-TITLE is 'uuid, call 'string->uuid'.
* gnu/system.scm (operating-system-grub.cfg): Add 'root-device'
variable and use it for the "--root=" argument.
2016-01-01 22:50:26 +01:00
Ludovic Courtès f8865db6a0 file-systems: Move 'string->uuid' to the build side.
* gnu/system/file-systems.scm (%uuid-rx, string->uuid): Move to...
* gnu/build/file-systems.scm (%uuid-rx, string->uuid): ... here.  New
variables.
2016-01-01 22:41:35 +01:00
Ludovic Courtès 29824d80ec system: Allow the root file system to have a UUID.
This is a followup to ab64483.

* gnu/system.scm (mapped-device-user): Check whether the title of FS is
'device before calling 'string=?'.
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Likewise.
2016-01-01 22:34:13 +01:00
Ludovic Courtès e80d2555f5 gnu: findutils: Update to 4.6.0.
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
2016-01-01 01:05:06 +01:00
Fabian Harfert 45147b0caa gnu: Add xaos.
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2015-12-31 11:29:43 +03:00
Leo Famulari 658212ebf7 gnu: Move cursynth to (gnu packages music).
* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
2015-12-30 21:26:05 -05:00
Leo Famulari 2ef8bbc3ae gnu: libcue: Update source URL.
* gnu/packages/cdrom.scm (libcue)[source]: Update URL.
2015-12-30 19:59:58 -05:00
Efraim Flashner 34da7af4c1 gnu: python-mox3: Update to 0.13.0.
* gnu/packages/openstack.scm (python-mox3): Update to 0.13.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 13fcc6df37 gnu: python-fixtures: Update to 1.4.0.
* gnu/packages/python.scm (python-fixtures): Update to 1.4.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner af1ab77312 gnu: python-pyld: Update to 0.6.8.
* gnu/packages/python.scm (python-pyld): Update to 0.6.8.
2015-12-30 23:16:09 +02:00
Efraim Flashner 1780424035 gnu: python-virtualenv: Update to 13.1.2.
* gnu/packages/python.scm (python-virtualenv): Update to 13.1.2.
[arguments]: Custom test command.
[inputs]: Remove python-nose, add python-pytest.
2015-12-30 23:16:09 +02:00
Efraim Flashner ec89a25cad gnu: python-oslosphinx: Update to 4.2.0.
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.2.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner f66bb273de gnu: python-oslo.serialization: Update to 2.2.0.
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.2.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 4768988887 gnu: python-os-testr: Update to 0.5.0.
* gnu/packages/openstack.scm (python-os-testr): Update to 0.5.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 45f4c28d80 gnu: python-stevedore: Update to 1.10.0.
* gnu/packages/openstack.scm (python-stevedore): Update to 1.10.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 622d21bba9 gnu: python-tempest-lib: Update to 0.12.0.
* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.12.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 690e8c6637 gnu: python-passlib: Update to 1.6.5.
* gnu/packages/python.scm (python-passlib): Update to 1.6.5.
2015-12-30 23:16:09 +02:00
Efraim Flashner 03fd001cef gnu: python-libarchive-c: Update to 2.2.
* gnu/packages/python.scm (python-libarchive-c): Update to 2.2.
2015-12-30 23:16:09 +02:00
Efraim Flashner 99b00dc796 gnu: python-tlsh: Update to 3.4.4.
* gnu/packages/python.scm (python-tlsh): Update to 3.4.4.
2015-12-30 23:16:09 +02:00
Efraim Flashner b8834c219e gnu: python-webob: Update to 1.5.1.
* gnu/packages/python.scm (python-webob): Update to 1.5.1.
2015-12-30 23:16:09 +02:00
Efraim Flashner 1b99553317 gnu: python-flake8: Update to 2.5.1.
* gnu/packages/python.scm (python-flake8): Update to 2.5.1.
2015-12-30 23:16:09 +02:00
Efraim Flashner 2abc397225 gnu: python-pyflakes: Update to 1.0.0.
* gnu/packages/python.scm (python-pyflakes): Update to 1.0.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 3655ee76a6 gnu: python-pyzmq: Update to 15.1.0.
* gnu/packages/python.scm (python-pyzmq): Update to 15.1.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner f56777be0a gnu: python-psutil: Update to 3.3.0.
* gnu/packages/python.scm (python-psutil): Update to 3.3.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 38eb6919e1 gnu: python-pycparser: Update to 2.14.
* gnu/packages/python.scm (python-pycparser): Update to 2.14.
2015-12-30 23:16:09 +02:00
Efraim Flashner d9aa097b96 gnu: python-pyrfc3339: Update to 1.0.
* gnu/packages/python.scm (python-pyrfc3339): Update to 1.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner f7cb984133 gnu: python-nose: Update to 1.3.7.
* gnu/packages/python.scm (python-nose): Update to 1.3.7.
2015-12-30 23:16:09 +02:00
Efraim Flashner ec3bcbc7e4 gnu: python-rpy2: Update to 2.7.6.
* gnu/packages/python.scm (python-rpy2): Update to 2.7.6.
2015-12-30 23:16:09 +02:00
Efraim Flashner 11f97c27bc gnu: pelican: Update to 3.6.3.
* gnu/packages/python.scm (pelican): Update to 3.6.3.
2015-12-30 23:16:09 +02:00
Efraim Flashner e98149b3a4 gnu: python-jinja2: Update to 2.8.
* gnu/packages/python.scm (python-jinja2): Update to 2.8.
2015-12-30 23:16:09 +02:00
Efraim Flashner 8925d4f345 gnu: python-unidecode: Update to 0.04.18.
* gnu/packages/python.scm (python-unidecode): Update to 0.04.18.
2015-12-30 23:16:09 +02:00
Efraim Flashner 7fb9ff4dea gnu: python-blinker: Update to 1.4.
* gnu/packages/python.scm (python-blinker): Update to 1.4.
2015-12-30 23:16:09 +02:00
Efraim Flashner c2a9c1c0bc gnu: python-dateutil: Update to 2.4.2.
* gnu/packages/python.scm (python-dateutil): Update to 2.4.2.
2015-12-30 23:16:09 +02:00
Efraim Flashner 2c3d13fe1b gnu: isync: Update to 1.2.1.
* gnu/packages/mail.scm (isync): Update to 1.2.1.
2015-12-30 23:16:09 +02:00
Efraim Flashner aadf46253a gnu: getmail: Update to 4.48.0.
* gnu/packages/mail.scm (getmail): Update to 4.48.0.
2015-12-30 23:16:09 +02:00
Efraim Flashner 866fade9e5 gnu: notmuch: Update to 0.21.
* gnu/packages/mail.scm (notmuch): Update to 0.21.
2015-12-30 23:16:09 +02:00
Efraim Flashner 70e9d258c4 gnu: youtube-dl: Update to 2015.12.29.
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.29.
2015-12-30 23:16:09 +02:00
Efraim Flashner 31e98ca63f gnu: offlineimap: Update to 6.6.1.
* gnu/packages/mail.scm (offlineimap): Update to 6.6.1.
2015-12-30 23:16:09 +02:00
Ricardo Wurmus 3d5fd24090 gnu: Add Fritzing.
* gnu/packages/engineering.scm (fritzing): New variable.
2015-12-30 20:41:33 +01:00
Ludovic Courtès 0084aaf3d4 gnu: Add lcov.
* gnu/packages/code.scm (lcov): New variable.
2015-12-30 19:14:04 +01:00
Alex Vong 0c1910ed03 gnu: ladspa: Update URLs.
* gnu/packages/audio.scm (ladspa): Update source and home page url.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-12-30 18:18:38 +01:00
Andreas Enge f95dad899b gnu: texlive: Patch texmfcnf.lua.
* gnu/packages/texlive.scm (texlive): Patch texmfcnf.lua to point to the
  absolute texlive-texmf tree.
2015-12-30 11:24:26 +01:00
Mark H Weaver 826244f01a gnu: fuse: Fix source URI.
This is a followup to commit b7e7d1b9d3.

* gnu/packages/linux.scm (fuse)[source]: Fix source URI.
2015-12-29 22:25:02 -05:00
Ben Woodcroft 19f4554c94 gnu: Add fraggenescan.
* gnu/packages/bioinformatics.scm (fraggenescan): New variable.
2015-12-29 20:14:03 -05:00