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Author SHA1 Message Date
宋文武 6983ba5660 Revert "Revert "Merge branch 'gnome-updates'"" 
This reverts commit e969b140a4.
 2016-05-02 22:06:36 +08:00
Nicolas Goaziou d20708b6c5 gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-02 22:05:54 +08:00
Nicolas Goaziou acb31b5dcd
gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-01 17:58:39 -04:00
Leo Famulari e411ce1860
gnu: poppler: Fix CVE-2015-8868. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
* gnu/packages/patches/poppler-CVE-2015-8868.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-30 16:14:38 -04:00
Rob Syme b0e52f52b7 gnu: ruby: Update to 2.3.1. 
* gnu/packages/ruby.scm (ruby): Update to 2.3.1.
[origin] Add symlink patch.
* gnu/packages/patches/ruby-symlinkfix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-04-30 08:39:27 +10:00
Eric Bavier f36a1ebaab gnu: Add Fossil. 
* gnu/packages/version-control.scm (fossil): New variable.
* gnu/packages/patches/fossil-test-fixes.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-29 16:42:10 -05:00
Mark H Weaver dde2a94c09 gnu: icecat: Add fixes for CVE-2016-{2805,2807,2808,2814} etc. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-update-bundled-graphite2: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.

icecat fixup
 2016-04-28 10:25:19 -04:00
宋文武 6fdc73e099 gnu: fltk: Fix undefined symbol `Fl_XFont_On_Demand::value'. 
* gnu/packages/patches/fltk-xfont-on-demand.patch: New patch.
* gnu/packages/fltk.scm (fltk)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-28 12:23:51 +08:00
Eric Bavier f79ee25f32 gnu: woff2: Fix build parallelism. 
* gnu/packages/patches/woff2-libbrotli.patch: Add dependency of
executables on object files.
 2016-04-25 18:38:50 -05:00
Ludovic Courtès e3d0fcbf7e
gnu: Default to GCC 5. 
* gnu/packages/patches/gcc-libiberty-printf-decl.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source]: Use it.
(gcc): Switch to GCC-5.
* gnu/packages/commencement.scm (libstdc++-boot0): New variable.
(gcc-boot0)[inputs]: Add it.
[native-inputs]: Remove.
(gcc-toolchain-4.9): Switch to GCC-4.9.
(gcc-toolchain-5): Switch to GCC-FINAL.
* gnu-system.am (dist_patch_DATA): Add 'gcc-libiberty-printf-decl.patch'.
 2016-04-24 22:51:07 +02:00
Mark H Weaver e969b140a4 Revert "Merge branch 'gnome-updates'" 
This reverts commit 63655d459e, reversing
changes made to 80627f51f0.
 2016-04-23 13:13:53 -04:00
Mark H Weaver 267061ba0b Revert "gnu: inkscape: Fix build with glibmm-2.48." 
This reverts commit 0118c6ab62.
 2016-04-23 13:12:53 -04:00
Mark H Weaver 0118c6ab62 gnu: inkscape: Fix build with glibmm-2.48. 
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/inkscape.scm (inkscape)[source]: Add patch.
 2016-04-23 05:05:18 -04:00
Leo Famulari e993fb8493 gnu: imlib2: Fix CVE-2016-4024. 
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (imlib2): Use it.
 2016-04-22 23:59:37 -04:00
宋文武 63655d459e Merge branch 'gnome-updates' 2016-04-23 10:19:32 +08:00
Leo Famulari 67157996e2 gnu: openssh: Fix CVE-2015-8325. 
* gnu/packages/patches/openssh-CVE-2015-8325.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh): Use it.
 2016-04-17 13:48:31 -04:00
Ricardo Wurmus 534db46306 gnu: python-pandas: Fix test failures. 
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-pandas)[source]: Add patch.
 2016-04-17 11:36:25 +02:00
Jookia dbc3860ceb gnu: gtk+-2: Look in system data dirs for themes. 
* gnu/packages/patches/gtk2-theme-paths.patch: New patch.
* gnu/packages/gtk.scm (gtk+-2)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-16 11:46:50 +02:00
宋文武 7c951767c0 gnu: glib: Disable tests in build phases instead of patches. 
* gnu/packages/glib.scm (glib)[sources]: Remove glib-tests-desktop.patch,
glib-tests-prlimit.patch and glib-tests-gapplicatiotn.patch.
[arguments]: Add 'disable-falling-tests' phase.
* gnu/packages/patches/glib-tests-timer.patch: Adjust accordingly.
* gnu/packages/patches/glib-tests-desktop.patch,
  gnu/packages/patches/glib-tests-gapplication.patch,
  gnu/packages/patches/glib-tests-prlimit.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-16 11:44:24 +02:00
宋文武 7dd99e5573 gnu: glib: Drop glib-tests-homedir.patch. 
* gnu/packages/glib.scm (glib)[source]: Remove glib-tests-homedir.patch.
[arguments]: Set HOME and disable '/gdbus/codegen-peer-to-peer' test.
* gnu/packages/patches/glib-tests-homedir.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-16 11:43:54 +02:00
Eric Bavier 5391be116e gnu: fontforge: Make SVG builds reproducible. 
* gnu/packages/patches/fontforge-svg-modtime.patch: New file.
* gnu/packages/fontutils.scm (fontforge)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 579760d06e gnu: Add woff2. 
* gnu/packages/fontutils.scm (woff2): New variable.
* gnu/packages/patches/woff2-libbrotli.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 1555aee7d0 gnu: Add ttf2eot. 
* gnu/packages/fontutils.scm (ttf2eot): New variable.
* gnu/packages/patches/ttf2eot-cstddef.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 1e69db8f14 gnu: Add ttfautohint. 
* gnu/packages/fontutils.scm (ttfautohint): New variable.
* gnu/packages/patches/ttfautohint-source-date-epoch.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:28 -05:00
Efraim Flashner 58e87f66ce gnu: icecat: Update to 38.7.1-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-10 08:40:42 +03:00
Ludovic Courtès a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Ludovic Courtès 425b8537e8 gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu/packages/pcre.scm (pcre)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 22:55:23 +02:00
Ludovic Courtès e37595d961 gnu: glibc: Update to 2.23. 
* gnu/packages/base.scm (glibc): Update to 2.23.  Remove
"glibc-locale-incompatibility.patch" and "glibc-CVE-2015-7547.patch",
now unneeded.
[arguments]: Add "libc_cv_ssp_strong=no" to #:configure-flags.  Remove
now unneeded patching of 'configure'.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: Remove.
* gnu/packages/patches/glibc-locale-incompatibility.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2016-04-06 22:24:13 +02:00
Efraim Flashner 0ea4079f34 gnu: abiword: Update to 3.0.1. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-06 23:15:59 +03:00
Ludovic Courtès 933d2fe4cf Merge branch 'master' into core-updates 2016-04-06 12:00:29 +02:00
Mark H Weaver 37b2dba1cc gnu: libextractor: Improve ffmpeg-3 patch. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional
fixes and harmonize with patches in upstream repository.
 2016-04-04 23:49:48 -04:00
Mark H Weaver fd7fd3c167 gnu: libextractor: Add patch to fix build with ffmpeg-3. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
 2016-04-04 22:55:52 -04:00
Efraim Flashner 451c1436a3 gnu: mc: Update to 4.8.16. 
* gnu/packages/mc.scm (mc): Update to 4.8.16.
[source]: Remove patch.
* gnu/packages/patches/mc-fix-ncurses-build.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-02 23:39:32 +03:00
Ludovic Courtès 915363a3e2 gnu: wicd: Add template for WPA2-TTLS. 
* gnu/packages/patches/wicd-wpa2-ttls.patch: New file.
* gnu/packages/wicd.scm (wicd)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-01 13:59:58 +02:00
Ludovic Courtès f5480572d0 gnu: wicd: Update to 1.7.4. 
* gnu/packages/wicd.scm (wicd): Update to 1.7.4.
[source]: Remove 'wicd-template-instantiation.patch'.
* gnu/packages/patches/wicd-template-instantiation.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-01 13:59:58 +02:00
Mark H Weaver 51514e6959 gnu: expat: Update to 2.1.1. 
* gnu/packages/patches/expat-CVE-2015-1283.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xml.scm (expat): Update to 2.1.1.
[source]: Use bz2 tarball.  Remove patch.
 2016-03-25 21:38:16 -04:00
Mark H Weaver 58cc369f32 gnu: webkitgtk-2.4: Update to 2.4.10 [fixes many security flaws]. 
Fixes CVE-2014-1748, CVE-2015-1071, CVE-2015-1076, CVE-2015-1081,
CVE-2015-1083, CVE-2015-1120, CVE-2015-1122, CVE-2015-1127, CVE-2015-1153,
CVE-2015-1155, CVE-2015-3658, CVE-2015-3659, CVE-2015-3727, CVE-2015-3731,
CVE-2015-3741, CVE-2015-3743, CVE-2015-3745, CVE-2015-3747, CVE-2015-3748,
CVE-2015-3749, CVE-2015-3752, CVE-2015-5788, CVE-2015-5794, CVE-2015-5801,
CVE-2015-5809, CVE-2015-5822, and CVE-2015-5928.

* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.10.
[source]: Remove patch.
 2016-03-22 07:38:22 -04:00
Ludovic Courtès cd6cc144e0 Merge branch 'security-updates' 2016-03-22 00:14:03 +01:00
Leo Famulari 064503aaa2 gnu: Add python-rarfile. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): New
variables.
* gnu/packages/patches/python-rarfile-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-03-18 14:27:16 -04:00
Mark H Weaver e3d3546eda gnu: libotr: Fix tests on mips64el. 
* gnu/packages/patches/libotr-test-auth-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (libotr)[source]: Add patch.
 2016-03-17 19:05:08 -04:00
Mark H Weaver a3b84f70d8 Merge branch 'master' into security-updates 2016-03-15 12:40:53 -04:00
Efraim Flashner 20109e07bd gnu: gitolite: Update to 3.6.5. 
* gnu/packages/version-control.scm (gitolite): Update to 3.6.5.
[source]: Remove patch.
* gnu/packages/patches/gitolite-openssh-6.8-compat.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-03-15 07:10:35 +02:00
Mark H Weaver 2c9f0b0770 Merge branch 'master' into security-updates 2016-03-12 15:07:41 -05:00
Andreas Enge 8e755b1bcd gnu: mupdf: Simplify package. 
* gnu/packages/pdf.scm (mupdf)[source]: Drop patch and part of snippet
  modifying permissions of files added by the patch.
  [arguments]: Use #:make-flags instead of modified build and install phases.
  Drop superfluous module inclusion. Use modify-phases syntax.
* gnu/packages/patches/mupdf-buildsystem-fix.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-03-12 09:56:27 +01:00
Ludovic Courtès ef0f0d5f97 gnu: vorbis-tools: Patch buffer overflow [fixes CVE-2015-6749]. 
* gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xiph.scm (vorbis-tools)[source]: Use it.
 2016-03-11 16:33:50 +01:00
Mark H Weaver c3499ad6b8 gnu: icecat: Add several security fixes. 
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-bug-1248851.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-03-10 10:52:41 -05:00
Ludovic Courtès 4cff124bbf gnu: openssl: Update to 1.0.2g. 
* gnu/packages/tls.scm (openssl)[replacement]: Remove.
[version, source]: Bump to 1.0.2g.  Use "openssl-c-rehash-in.patch"
instead of "openssl-c-rehash.patch".
(openssl-1.0.2g): Remove.
* gnu-system.am (dist_patch_DATA): Remove "openssl-c-rehash.patch".
 2016-03-09 15:20:34 +01:00
Efraim Flashner e224495ce1 gnu: jasper: Add fixes for CVE-2016-1577, CVE-2016-2089, CVE-2016-2116. 
* gnu/packages/patches/jasper-CVE-2016-1557.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-03-08 11:54:58 +02:00
Andreas Enge d7c4619bd1 gnu: Add einstein. 
* gnu/packages/games.scm (einstein): New variable.
* gnu/packages/patches/einstein-build.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-03-05 18:44:43 +01:00
Leo Famulari d8173f21f7 gnu: perl: Replace with patched version [fixes CVE-2016-2381]. 
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl-fixed): New variable.
* gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
 2016-03-03 14:56:23 -05:00
Lukas Gradl e90819c40a gnu: Add procmail. 
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
 * gnu-system.am (dist_patch_DATA): Add it.
 * gnu/packages/mail.scm (procmail): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-02 20:44:18 -05:00
Mark H Weaver b134a80c36 gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]. 
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-03-02 15:13:15 -05:00
Leo Famulari 5e8276dcf4 gnu: ilmbase: Add patch to fix build on i686. 
Fixes <http://bugs.gnu.org/22049>.

* gnu/packages/patches/ilmbase-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (ilmbase)[source]: Add patch.
 2016-03-01 19:08:31 -05:00
Ludovic Courtès caeadfddb0 gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}]. 
See <http://openssl.org/news/secadv/20160301.txt>.
Also fixes <http://bugs.gnu.org/22831>.

* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
 2016-03-01 16:00:46 +01:00
Mark H Weaver 9579118922 gnu: bitlbee: Update to 3.4.1. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
 2016-02-27 21:10:56 -05:00
Ricardo Wurmus a003b5b650 gnu: scribus: Update to 1.5.1. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-02-27 16:34:20 +01:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste. 
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-02-25 11:01:45 -08:00
Mark H Weaver e62b5c6903 Merge branch 'media-updates' 2016-02-25 13:50:19 -05:00
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]. 
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:09 -05:00
Andy Wingo 2ae7a55062 gnu: xf86-video-vmware: Update to 13.1.0. 
* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bcd4a74039 gnu: xf86-video-trident: Update to 1.3.7. 
* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 816decebf2 gnu: xf86-video-tdfx: Update to 1.4.6. 
* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 5f59f5103a gnu: xf86-video-sis: Update to 0.10.8. 
* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch,
  gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8.
  [source]: Remove patches.
 2016-02-24 11:49:57 -05:00
Andy Wingo fc1172f787 gnu: xf86-video-siliconmotion: Update to 1.7.8. 
* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch:
  Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bfe27469b4 gnu: xf86-video-r128: Update to 6.10.1. 
* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea192db119 gnu: xf86-video-mga: Update to 1.6.4. 
* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Leo Famulari 4e58a402ff gnu: cpio: Add fix for CVE-2016-2037. 
* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio)[source]: Add patch.
 2016-02-19 18:04:15 -05:00
Mark H Weaver 3729ff4183 gnu: glibc: Add fix for CVE-2015-7547. 
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Add patch.
 2016-02-19 00:42:10 -05:00
Pjotr Prins 552f5c009e gnu: Add slurm. 
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-02-15 22:47:47 +01:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]. 
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
 2016-02-15 02:51:35 -05:00
Jan Nieuwenhuizen a747baba00 gnu: Add ocaml-findlib. 
* gnu/packages/ocaml.scm (ocaml-findlib): New variable.
* gnu/packages/patches/ocaml-findlib-make-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
 2016-02-13 09:15:55 +01:00
Mark H Weaver 3a7261bf96 gnu: gnupg: Add upstream fix for test failures on x86_64. 
Fixes <https://debbugs.gnu.org/22558>.

* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
 2016-02-12 21:02:24 -05:00
Jan Nieuwenhuizen 511539ae81 gnu: Add tclxml. 
* gnu/packages/patches/tclxml-3.2-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tclxml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 19:13:05 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes. 
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
 2016-02-11 14:59:16 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
 2016-02-10 10:41:11 -05:00
Christopher Allan Webber 6f74aecdb3 gnu: xdotools: Update to 3.20150503.1 
* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1.
* gnu/packages/patches/xdotool-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 15:39:51 -08:00
Christopher Allan Webber a05d1d82c0 gnu: Add python-pygpgme 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables.
* gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 11:30:35 -08:00
Mark H Weaver 08cb746f08 gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites. 
* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-02-06 08:48:20 -05:00
Mark H Weaver a7d8c466db gnu: icecat: Update to 38.6.0-gnu1. 
* gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1.
  [source]: Remove patches.
 2016-02-05 16:00:25 -05:00
Leo Famulari 90bcecc568 gnu: jasper: Add fixes for several security flaws. 
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-02-04 15:09:41 -05:00
Mark H Weaver 5fb205c638 gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f. 
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
 2016-02-04 00:15:21 -05:00
Federico Beffa e5045f303a gnu: Add emacs-constants. 
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-03 10:48:36 +01:00
Federico Beffa e037a09f1d gnu: Add emacs-scheme-complete. 
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2016-02-03 10:47:21 +01:00
Mark H Weaver fd9a5b0fc3 gnu: qemu: Update to 2.5.0; add fixes for security flaws. 
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
  gnu/packages/patches/qemu-CVE-2015-8558.patch,
  gnu/packages/patches/qemu-CVE-2015-8567.patch,
  gnu/packages/patches/qemu-CVE-2015-8613.patch,
  gnu/packages/patches/qemu-CVE-2015-8701.patch,
  gnu/packages/patches/qemu-CVE-2015-8743.patch,
  gnu/packages/patches/qemu-CVE-2016-1568.patch,
  gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
  new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
  [source]: Remove old patches and add new ones.
  [arguments]: Add 'disable-test-qga' phase.
  (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
 2016-02-03 00:05:22 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
 2016-02-01 23:47:35 -05:00
Eric Bavier e3f755f44c gnu: Add pinball. 
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-01-31 23:46:30 -06:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
 2016-01-31 14:36:08 +02:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs. 
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-01-28 00:34:20 -05:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Mark H Weaver 86fa2ea92f gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}. 
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
  gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
  gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
  [source]: Add patches.
 2016-01-21 00:30:15 -05:00
Eric Bavier 97b07aaa41 gnu: Add perl-module-pluggable. 
This Perl module was moved out of Perl core in v5.19.0.

* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-20 17:45:31 -06:00
Mark H Weaver beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
 2016-01-20 13:23:42 -05:00
Andreas Enge f32ee38fcd gnu: arb: Correct patch. 
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
 2016-01-20 16:57:17 +01:00
Andreas Enge ffc8f34511 gnu: arb: Update to 2.8.1. 
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-01-20 16:33:34 +01:00
Andreas Enge 7c853c02b8 gnu: doxygen: Update to 1.8.11. 
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
  Drop one patch.
  [build-system]: Switch to cmake-build-system, since gnu-build-system
  is not supported any more.
  [arguments]: Adapt.
  [native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-01-20 13:19:48 +01:00
Mark H Weaver afe9f40949 Merge branch 'master' into core-updates 2016-01-19 00:18:37 -05:00
Mark H Weaver 8d9bae4ed7 gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558]. 
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
  [source]: Remove patch.
 2016-01-15 18:03:02 -05:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22. 
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-15 14:23:46 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
 2016-01-14 14:43:25 +01:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test. 
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-14 10:43:08 +01:00
Ludovic Courtès 8c986ab120 Merge branch 'master' into core-updates 2016-01-13 18:18:48 +01:00
Eric Bavier c91d3fb7f4 gnu: boost: Update to 1.60.0. 
* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
 2016-01-12 21:07:53 +01:00
Mark H Weaver 203795acea gnu: perl: Add fix for CVE-2015-8607. 
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
 2016-01-12 13:12:07 -05:00
Mark H Weaver 16aa649117 gnu: sudo: Add fix for CVE-2015-5602. 
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
 2016-01-12 11:23:06 -05:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-01-11 00:36:13 +10:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575]. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
 2016-01-08 15:29:50 -05:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers. 
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
 2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'. 
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
 2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0. 
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
 2016-01-07 08:42:15 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7. 
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
 2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'. 
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
 2016-01-05 13:13:17 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00
Ludovic Courtès 53334dd6e9 Merge branch 'master' into core-updates 2016-01-03 14:53:03 +01:00
Ludovic Courtès 1575dcd134 gnu: grep: Skip timing-sensitive test. 
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw>.

* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
 2016-01-03 14:50:29 +01:00
Eric Bavier 209778717a gnu: Add Asymptote. 
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-02 16:04:55 -06:00
Ludovic Courtès e80d2555f5 gnu: findutils: Update to 4.6.0. 
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
 2016-01-01 01:05:06 +01:00
Leo Famulari b7e7d1b9d3 gnu: fuse: Update to 2.9.4. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
  [source]: Remove patch.
 2015-12-29 14:20:55 -05:00
Mark H Weaver 097190417f gnu: icecat: Update to 38.5.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
  gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
  [source]: Remove patches.
 2015-12-23 18:19:59 -05:00
Leo Famulari f0150f8724 gnu: grub: Add fix for CVE-2015-8730. 
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
 2015-12-21 12:33:55 -05:00
Ludovic Courtès 8309c3899a gnu: commencement: Use GMP 6.0.0a for bootstrapping. 
* gnu/packages/multiprecision.scm (gmp-6.0): New variable.
* gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated
from before e414a7d.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-18 18:38:22 +01:00
Mark H Weaver 3faf214a0b gnu: icecat: Add fixes for several security flaws. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-12-17 14:12:06 -05:00
Federico Beffa fceac88039 gnu: python-ipython: Patch 'ctypes' bug. 
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: New patch.
* gnu/packages/python.scm (python-ipython): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-15 18:05:42 +01:00
Efraim Flashner 9c1c2a7f8d gnu: bluez: Update to 5.36. 
* gnu/packages/linux.scm (bluez): Update to 5.36.
[source]: Remove patch.
* gnu/packages/patches/bluez-tests.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-12-14 11:06:20 +02:00
Ludovic Courtès 4187fe750f gnu: perl: Build deterministically, and make byproducts deterministic. 
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.

* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès 4de3507483 gnu: perl: Update to 5.22.0. 
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès e82e55e58c Merge branch 'master' into core-updates 2015-12-12 11:48:46 +01:00
Ludovic Courtès 6a4db3f361 gnu: libarchive: Fix test failure on SELinux systems. 
Reported by Jan Synáček <jan.synacek@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00522.html>.

* gnu/packages/patches/libarchive-bsdtar-test.patch: New file.
* gnu/packages/backup.scm (libarchive)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-09 23:10:10 +01:00
Mark H Weaver 821060f3f6 gnu: libxml2: Update to 2.9.3. 
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-8035.patch,
  gnu/packages/patches/libxml2-bug-737840.patch,
  gnu/packages/patches/libxml2-bug-738805.patch,
  gnu/packages/patches/libxml2-bug-746048.patch,
  gnu/packages/patches/libxml2-bug-747437.patch,
  gnu/packages/patches/libxml2-bug-751603.patch,
  gnu/packages/patches/libxml2-bug-751631.patch,
  gnu/packages/patches/libxml2-bug-754946.patch,
  gnu/packages/patches/libxml2-bug-754947.patch,
  gnu/packages/patches/libxml2-bug-755857.patch,
  gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
  gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt2.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2): Update to 2.9.3.  Remove patches.
 2015-12-07 09:54:01 -05:00
Leo Famulari 99fffa8ae0 gnu: Add python-configobj. 
* gnu/packages/python.scm (python-configobj, python2-configobj): New
  variables.
* gnu/packages/patches/python-configobj-setuptools.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-05 09:44:37 -05:00
Mark H Weaver b9fa245fcd gnu: icecat: Update to 38.4.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
  gnu/packages/patches/icecat-CVE-2015-7188.patch,
  gnu/packages/patches/icecat-CVE-2015-7189.patch,
  gnu/packages/patches/icecat-CVE-2015-7193.patch,
  gnu/packages/patches/icecat-CVE-2015-7194.patch,
  gnu/packages/patches/icecat-CVE-2015-7196.patch,
  gnu/packages/patches/icecat-CVE-2015-7197.patch,
  gnu/packages/patches/icecat-CVE-2015-7198.patch,
  gnu/packages/patches/icecat-CVE-2015-7199.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.4.0-gnu1.  Remove the
  obsolete patches.
 2015-12-04 15:52:16 -05:00
Andreas Enge e414a7dec3 gnu: gmp: Drop patch included in release 6.1.0. 
* gnu/packages/multiprecision.scm (gmp)[source]: Drop patch.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2015-12-02 20:03:51 +01:00
Federico Beffa 1bbc659fd2 gnu: python-matplotlib: Add 'TkAgg' backend and update to version '1.4.3'. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Do it.
* gnu/packages/patches/matplotlib-setupext-tk.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2015-12-02 18:21:13 +01:00
Ludovic Courtès 9820a6d4a0 gnu: python: Make 'sys.version' deterministic. 
* gnu/packages/patches/python-2-deterministic-build-info.patch,
  gnu/packages/patches/python-3-deterministic-build-info.patch: New
  files.
* gnu/packages/python.scm (python-2, python): Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès dedc832070 gnu: python-2: Honor 'SOURCE_DATE_EPOCH'. 
* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
  [arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
  procedure.
  (%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès f8e7fdc416 gnu: tcl: Produce 'tclIndex' files deterministically. 
* gnu/packages/patches/tcl-mkindex-deterministic.patch: New patch.
* gnu/packages/tcl.scm (tcl)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-29 22:59:28 +01:00
宋文武 79c8a071e7 tk: Hardcode path to TK_LIBRARY. 
Fixes <http://bugs.gnu.org/20889>.

* gnu/packages/patches/tk-find-library.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tk)[source]: Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès cb7bd0cff5 gnu: weechat: Dynamically link against libpython2.7.so. 
* gnu/packages/patches/weechat-python.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/weechat.scm (weechat)[source]: Use it.
 2015-11-29 19:17:33 +01:00
Ludovic Courtès f79a576e77 gnu: jasper: Patch CVE-2008-3522. 
* gnu/packages/patches/jasper-CVE-2008-3522.patch: New file.
* gnu/packages/image.scm (jasper)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-28 16:29:11 +01:00
David Thompson 33ae9107d8 gnu: Add tinyxml. 
* gnu/packages/xml.scm (tinyxml): New variable.
* gnu/packages/patches/tinyxml-use-stl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-25 11:44:11 -05:00
Ludovic Courtès b6094b1f0a gnu: dico: Sort entries in .a files deterministically. 
* gnu/packages/patches/dico-libtool-deterministic.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
[arguments]: Add #:make-flags.
* gnu-system.am (dist_patch_DATA): Add the patch.
 2015-11-25 11:59:54 +01:00
Ricardo Wurmus 7775a18690 gnu: Add Synfig. 
* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-20 20:23:03 +01:00
Eric Bavier 2f5b6a1f18 gnu: hwloc: Update to 1.11.1. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
  [source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 11:58:40 -06:00
Ricardo Wurmus 0297966495 gnu: guitarix: Update to 0.34.0. 
* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 18:19:30 +01:00
Ricardo Wurmus b49c5a58dc gnu: preseq: Update to 2.0. 
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
  file.
* gnu-system.am (dist_patch_DATA): Remove them.
 2015-11-20 15:22:06 +01:00
Mark H Weaver 3470fe002c gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805. 
* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
 2015-11-18 17:47:40 -05:00