Commit Graph

1784 Commits

Author SHA1 Message Date
Efraim Flashner d5c60e0aff
gnu: allegro@4: Fix building with newer mesa.
* gnu/packages/game-development.scm (allegro@4)[source]: Add patch.
* gnu/packages/patches/allegro4-mesa-18.2.5-and-later.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-01 10:55:41 +02:00
Efraim Flashner 47970cf66c
gnu: wesnoth: Fix building with newer boost.
* gnu/packages/games.scm (wesnoth)[source]: Add patch.
* gnu/packages/patches/wenoth-newer-boost.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-31 10:26:32 +02:00
Efraim Flashner 684f97f8c9
gnu: vinagre: Update package for newer freerdp.
* gnu/packages/gnome.scm (vinagre)[source]: Update patches.
[arguments]: Add custom  phase to replace 'freerdp' with
'freerdp2'. Remove configure flags.
* gnu/packages/patches/vinagre-revert-1.patch,
gnu/packages/patches/vinagre-revert-2.patch: Remove files.
* gnu/packages/patches/vinagre-newer-freerdp.patch,
gnu/packages/patches/vinagre-newer-rdp-parameters.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register changes.
2018-12-30 20:22:59 +02:00
Efraim Flashner 152d6bf014
gnu: fbreader: Fix building with newer curl.
* gnu/packages/ebook.scm (fbreader)[source]: Add patch.
* gnu/packages/patches/fbreader-curl-7.62.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-30 11:49:31 +02:00
Efraim Flashner 1262be5c61
gnu: glib-networking: Work around test failure.
* gnu/packages/gnome.scm (glib-networking)[source]: Add patch.
* gnu/packages/patches/glib-networking-connection.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-27 12:55:45 +02:00
Marius Bakke 2bfcdbce51
Merge branch 'master' into staging 2018-12-26 16:03:09 +01:00
Marius Bakke e99d036828
gnu: efl: Fix build on 32-bit architectures.
* gnu/packages/patches/efl-mesa-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/enlightenment.scm (efl)[source](patches): Use it.
2018-12-26 12:27:57 +01:00
Marius Bakke 33eb63da64
gnu: sssd: Fix build with cURL >= 7.62.0.
* gnu/packages/patches/sssd-curl-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/sssd.scm (sssd)[source](patches): Use it.
2018-12-26 12:27:57 +01:00
Efraim Flashner e47c69f226
gnu: file: Fix CVE-2018-10360.
* gnu/packages/patches/file-CVE-2018-10360.patch: New file.
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use 'package/inherit' to
receive security fixes.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-24 11:12:52 +02:00
Marius Bakke 6bd8ba619d
gnu: zathura: Update to 0.4.3.
* gnu/packages/patches/zathura-plugindir-environment-variable.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/pdf.scm (zathura): Update to 0.4.3.
[source](patches): Remove.
[native-search-paths]: Adjust for upstreamed patch.
2018-12-23 23:26:30 +01:00
Marius Bakke 02bf685d00
Merge branch 'master' into staging 2018-12-23 23:26:04 +01:00
Ludovic Courtès f5301f005a
gnu: Remove conkeror.
* gnu/packages/conkeror.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/gnuzilla.scm (conkeror): New variable.
2018-12-23 22:14:15 +01:00
Efraim Flashner 472c36bd36
gnu: pingus: Fix building.
* gnu/packages/games.scm (pingus)[source]: Use 'git-fetch'. Add patch to
update used boost headers.
* gnu/packages/patches/pingus-boost-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-23 21:41:16 +02:00
Efraim Flashner b83ddd03d9
gnu: datamash: Update to 1.4.
* gnu/packages/datamash.scm (datamash): Update to 1.4.
[source]: Remove patch.
* gnu/packages/patches/datamash-arm-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-12-23 16:37:51 +02:00
Marius Bakke f30830b2e6
Merge branch 'master' into staging 2018-12-22 15:26:30 +01:00
Mathieu Othacehe 4b33a74138
gnu: Add emacs-wordnut.
* gnu/packages/patches/emacs-wordnut-require-adaptive-wrap.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add previous file.
* gnu/packages/emacs.scm (emacs-wordnut): New package.
2018-12-21 10:54:09 +01:00
Kei Kebreau b70ff03e59
gnu: meandmyshadow: Update to 10.5a.
* gnu/packages/games.scm (meandmyshadow): Update to 10.5a.
[source]: Remove patch.
* gnu/local.mk (dist_patch_DATA): Unregister patch.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: Delete file.
2018-12-20 13:21:34 -05:00
Pierre Langlois dba83d7d14
gnu: stumpwm: Fix gnew command.
The new release of StumpWM broken the interactive 'gnew' command.  It was
fixed upstream [0] and will be part of the next release.

0: https://github.com/stumpwm/stumpwm/pull/538

* gnu/packages/patches/stumpwm-fix-broken-read-one-line.patch: New file.
* gnu/packages/lisp.scm (stumpwm)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-19 09:45:39 -05:00
Arun Isaac 01cb4d4757
gnu: ansible: Work around issues with Guix wrapper scripts.
* gnu/packages/admin.scm (ansible)[source]: Remove
ansible-wrap-program-hack.patch from patches.
[arguments]: Add hide-wrapping and fix-symlinks phases.
* gnu/packages/patches/ansible-wrap-program-hack.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
2018-12-18 11:20:56 +05:30
Ludovic Courtès 92391eaf8d
gnu: glibc: Add patch implementing "pid/…" magic lookup on the Hurd.
This patch is missing from glibc 2.28 and is needed to support
/proc/self lookup when using the Hurd's procfs, which in turn is needed
for our 'guile-relocatable.patch'.

See <https://lists.gnu.org/archive/html/bug-hurd/2018-12/msg00024.html>.

* gnu/packages/patches/glibc-hurd-magic-pid.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[arguments]: Add 'apply-hurd-patch'
phase.
[native-inputs]: Add "hurd-magic-pid-patch" input.
* gnu/packages/cross-base.scm (cross-libc)[arguments]: Duplicate
'apply-hurd-patch' phase.
2018-12-16 16:28:07 +01:00
Rutger Helling 6b34499dc6
gnu: qemu: Update to 3.1.0.
* gnu/packages/virtualization.scm (qemu): Update to 3.1.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/qemu-CVE-2018-16847.patch,
gnu/packages/patches/qemu-CVE-2018-16867.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-12-13 14:40:52 -05:00
Marius Bakke 12878d12ac
Merge branch 'master' into staging 2018-12-12 22:00:52 +01:00
Marius Bakke 3f2848a5f9
gnu: libtiff: Update to 4.0.10.
* gnu/packages/patches/libtiff-CVE-2017-18013.patch,
gnu/packages/patches/libtiff-CVE-2017-9935.patch,
gnu/packages/patches/libtiff-CVE-2018-10963.patch,
gnu/packages/patches/libtiff-CVE-2018-8905.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (libtiff): Update to 4.0.10.
[source](patches): Remove.
2018-12-12 21:31:42 +01:00
Marius Bakke 6521155212
gnu: glib-networking: Update to 2.58.0.
* gnu/packages/gnome.scm (glib-networking): Update to 2.58.0.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Explicitly disable libproxy; add phase to appease tests.
(libgdata, libsoup)[arguments]: Remove phase that sets SSL_CERT_FILE.
* gnu/packages/spice.scm (spice)[arguments]: Likewise.
* gnu/packages/web.scm (uhttpmock)[arguments]: Likewise.
2018-12-12 20:49:14 +01:00
Marius Bakke 06f5bc4e12
gnu: GnuTLS: Update to 3.6.5.
* gnu/packages/patches/gnutls-skip-pkgconfig-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/tls.scm (gnutls): Update to 3.6.5.
[source](patches): Remove obsolete.
[source](snippet): Add Guile detection fix.
* gnu/packages/gnome.scm (libsoup)[arguments]: Adjust 'certtool' invokation to
cope with the new API.
2018-12-12 20:49:14 +01:00
Marius Bakke af0162bcc1
gnu: cyrus-sasl: Update to 2.1.27.
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl): Update to 2.1.27.
[source](patches): Remove.
[inputs]: Move MIT-KRB5 from here ...
[propagated-inputs]: ... to here.  New field.
* gnu/packages/openldap.scm (openldap)[arguments]: Adjust
'patch-sasl-path' phase (which was defunct, possibly since b148506df7) to
add krb5 linker flags.
2018-12-12 20:49:13 +01:00
Marius Bakke 87f29c1e5d
gnu: ghostscript: Update to 9.26.
* gnu/packages/patches/ghostscript-bug-699708.patch,
gnu/packages/patches/ghostscript-CVE-2018-16509.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.26.
[source](patches): Remove obsolete.
2018-12-12 20:49:13 +01:00
Marius Bakke d1ee69a9e8
gnu: cairo: Update to 1.16.0.
* gnu/packages/patches/cairo-CVE-2016-9082.patch,
gnu/packages/patches/cairo-setjmp-wrapper.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them/
* gnu/packages/gtk.scm (cairo): Update to 1.16.0.
[source](patches): Remove.
2018-12-12 20:49:12 +01:00
Marius Bakke 143fc1a591
gnu: poppler: Update to 0.72.0.
* gnu/packages/patches/poppler-CVE-2018-19149.patch: Delete file.
* gnu/packages/patches/inkscape-poppler-compat3.patch,
gnu/packages/patches/texlive-bin-luatex-poppler-compat.patch,
gnu/packages/patches/texlive-bin-pdftex-poppler-compat.patch,
gnu/packages/patches/texlive-bin-xetex-poppler-compat.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/pdf.scm (poppler): Update to 0.72.0.
[replacement]: Remove field.
(poppler/fixed): Remove variable.
* gnu/packages/inkscape.scm (inkscape)[source](patches): Add
'inkscape-poppler-compat{3..5}.patch'.
* gnu/packages/tex.scm (texlive-bin)[source](patches): Update
'texlive-poppler-compat.patch'.  Add
'texlive-bin-{lua,pdf,xe}tex-poppler-compat.patch'.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source](modules, snippet): New
fields.
* gnu/packages/scribus.scm (scribus)[source](patches): Add upstream patch origins.
[source](modules, snippet): New fields.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add three
upstream origins.
[source](snippet, modules): New field.
2018-12-12 20:49:12 +01:00
Leo Famulari fec2c8532d
gnu: Borg: Update to 1.1.8.
* gnu/packages/backup.scm (borg): Update to 1.1.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/borg-respect-storage-quota.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-12-10 13:23:17 -05:00
Gábor Boskovits accb5c3100
gnu: openjdk: Make idlj respect SOURCE_DATE_EPOCH.
* gnu/packages/patches/openjdk-10-idlj-reproducibility.patch: New file.
* gnu/packages/java.scm (openjdk10)[source]: Use it.
* gnu/locale.mk (dist_patch_DATA): Register it.
2018-12-09 12:55:36 +01:00
Leo Famulari 5d3f673db4
gnu: polkit: Fix CVE-2018-19788.
* gnu/packages/patches/polkit-CVE-2018-19788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit)[source]: Use it.
2018-12-09 00:21:09 -05:00
宋文武 b779dbac72
gnu: Add liblcf.
* gnu/packages/easyrpg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-12-09 09:11:13 +08:00
Marius Bakke fbb7b04a85
Merge branch 'master' into staging 2018-12-09 00:18:32 +01:00
Marius Bakke 8d65ae44ac
gnu: GCC@6: Update to 6.5.0.
* gnu/packages/patches/gcc-libsanitizer-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gcc.scm (gcc-6): Update to 6.5.0.
[source](patches): Drop obsolete patches.
[source](snippet): Remove.
2018-12-08 19:37:47 +01:00
Ludovic Courtès 3933905c5f
Merge branch 'version-0.16.0' 2018-12-07 00:00:41 +01:00
Leo Famulari e6c28113e6
gnu: QEMU: Fix CVE-2018-16847 and CVE-2018-16867.
* gnu/packages/patches/qemu-CVE-2018-16847.patch,
gnu/packages/patches/qemu-CVE-2018-16867.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2018-12-06 16:16:54 -05:00
Stefan Stefanović 4163f2467b
gnu: elogind: Update to 239.2.
* gnu/packages/freedesktop.scm (elogind): Update to 239.2.
[source](patches): Remove elogind-glibc-2.27.patch.
[source](snippet): Remove snippet.
[arguments]:
<#:tests?>: Enable tests.
<#:configure-flags>: Adjust build paths. Disable some tests.
<#:make-flags>: Remove argument.
<#:phases>[patch-locale-header]: Remove phase.
<#:phases>[clean-runpath]: Add phase.
<#:phases>[bootstrap]: Remove phase.
<#:phases>[fix-pkttyagent-path]: Add phase.
<#:phases>[fix-service-file]: Remove phase.
<#:phases>[add-libcap-to-search-path]: Remove phase.
<#:phases>[remove-uaccess-tag]: Remove phase.
<#:phases>[change-pid-file-path]: Add phase.
[build-system]: Switch to meson-build-system.
[native-inputs]: Sort native-inputs list.
Remove gperf package version constraint.
Remove: autoconf, automake, libtool, intltool.
Add: docbook-xml-4.2.
[inputs]: Remove: linux-libre-headers.
* gnu/packages/patches/elogind-glibc-2.27.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-12-06 20:22:41 +01:00
Ludovic Courtès c16c119d0a
gnu: quilt: Use shorter file names for patches.
We were reaching the 99-character limit of POSIX tar.

* gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this.
* gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-second-separator.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
2018-12-05 00:08:28 +01:00
Marius Bakke 4115e8ea3b
gnu: json-glib: Update to 1.4.4.
* gnu/packages/patches/json-glib-fix-tests-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (json-glib): Update to 1.4.4.
[source](patches): Remove.
2018-12-04 20:05:20 +01:00
Leo Famulari c05c1910db
gnu: Beets: Fix compatibility with Python 3.7.
* gnu/packages/patches/beets-python-3.7-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
*  gnu/packages/music.scm (beets)[source]: Use it.
2018-12-03 17:30:30 -05:00
Marius Bakke 99f63f011d
Merge branch 'master' into staging 2018-12-03 19:15:17 +01:00
Ludovic Courtès 194451347d
Merge branch 'core-updates' 2018-12-03 08:52:17 +01:00
Eric Bavier 37b82ccc39
handbrake: Update to 1.1.2.
* gnu/packages/video.scm (handbrake): Update to 1.1.2.
[source]: Use direct download url.  Remove upstreamed patch.  Patch make
fragments in snippet.
[inputs]: Use latest ffmpeg.  Add jansson and opus.
[arguments]: Remove 'disable-contrib phase, which is now in source snippet.
Move 'fix-x265-linking phase fix to #:configure-flags.
[license]: Use 'gpl2' as clarified in LICENSE.
* gnu/packages/patches/handbrake-pkg-config-path.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-12-01 09:42:25 -06:00
Efraim Flashner 5deb0c670d
gnu: blender: Use newer ffmpeg.
* gnu/packages/graphics.scm (blender)[source]: Add patch for newer
ffmpeg compatability.
[inputs]: Replace ffmpeg-2.8 with ffmpeg.
* gnu/packages/patches/blender-newer-ffmpeg.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-11-30 11:14:27 +02:00
Eric Bavier 5f230fb279
patchutils: Update to 0.3.4.
* gnu/packages/patchutils.scm (patchutils): Update to 0.3.4.
[arguments]: Simplify 'patch-test-scripts' phase.
* gnu/packages/patches/patchutils-xfail-gendiff-tests.patch: Rename to...
* gnu/packages/patches/patchutils-test-perms.patch: ...this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-11-30 00:21:25 -06:00
Marius Bakke 25ca46985c
Merge branch 'master' into core-updates 2018-11-29 15:56:49 +01:00
Ludovic Courtès c324ad52b6
gnu: lirc: Build reproducibly.
* gnu/packages/patches/lirc-reproducible-build.patch: New file.
* gnu/packages/lirc.scm (lirc)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-29 14:11:35 +01:00
Ludovic Courtès f2c99fe52b
gnu: rust: Shorten patch file name.
This file name was too long to fit in a tar archive.

* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
Rename to...
* gnu/packages/patches/rust-reproducible-builds.patch: ... this.
* gnu/packages/rust.scm (rust-1.27, rust): Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-11-29 13:14:22 +01:00
Robin Templeton 0a059eaee8
gnu: Add arcanist.
* gnu/packages/phabricator.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-29 10:00:50 +01:00
Jonathan Brielmaier 5019ee6c2a
gnu: Add missing patch to local.mk.
This was forgotten in 082d9383d1.

* gnu/local.mk (dist_patch_DATA): Add "ghc-haddock-library-unbundle.patch".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-29 09:32:04 +01:00
Ricardo Wurmus 4236959de8
gnu: scribus: Fix build with recent Poppler.
Suggested by ngz on #guix.

* gnu/packages/patches/scribus-poppler.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scribus.scm (scribus)[source]: Add patch.
2018-11-27 23:56:12 +01:00
Efraim Flashner 8e59c5febd
gnu: x265: Fix building on armhf-linux.
* gnu/packages/video.scm (x265)[patches]: Add patch.
[arguments]: Add a configure-flag to disable assembly. Adjust a custom
phase to recognize armv8 as 32-bit arm when masquerading as armhf-linux.
2018-11-27 19:58:01 +02:00
Eric Bavier 579a9cdec7
gnu: Add libopenshot.
* gnu/packages/video.scm (libopenshot): New variable.
* gnu/packages/patches/libopenshot-tests-with-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-26 19:03:54 -06:00
Danny Milosavljevic bc0d24292d
gnu: mono: Make build reproducible.
* gnu/packages/patches/mono-mdoc-timestamping.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mono.scm (mono)[source]: Use patch.
[arguments]<#:phases>[make-reproducible]: New phase.
<#:phases>[set-env]: Set SOURCE_DATE_EPOCH.
2018-11-27 00:36:47 +01:00
Björn Höfling 644af6c870
gnu: aegisub: Fix build.
* gnu/packages/patches/aegisub-boost68.patch: New file
* gnu/local.mk: Add it.
* gnu/packages/video.scm (aegisub)[source]: Use patch.
2018-11-25 23:29:09 +01:00
Marius Bakke 1e92d311c3
gnu: randomjungle: Do not build static binaries.
* gnu/packages/patches/randomjungle-disable-static-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/machine-learning.scm (randomjungle)[source](patches): Add it.
[arguments]: Add "--disable-static" to #:configure-flags.
2018-11-25 20:38:34 +01:00
Marius Bakke 4820b75de0
Merge branch 'master' into core-updates 2018-11-24 19:44:05 +01:00
Pierre Neidhardt 96cfa168e5
gnu: clojure: Move to new clojure.scm.
* gnu/local.mk (clojure): Include new clojure.scm.
* gnu/packages/clojure.scm: Add clojure, clojure-algo-generic,
  clojure-algo-monads, clojure-core-match, clojure-instaparse,
  clojure-tools-macro.
* gnu/packages/lisp.scm: Remove clojure, clojure-algo-generic,
  clojure-algo-monads, clojure-core-match, clojure-instaparse,
  clojure-tools-macro.
2018-11-24 15:20:51 +01:00
Marius Bakke 4d8f4a3f00
Merge branch 'master' into core-updates 2018-11-24 01:58:18 +01:00
Vagrant Cascadian 74e35e8c94
gnu: Add u-boot-pinebook.
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file.
* gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file.
* gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file.
* gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file.
* gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file.
* gnu/packages/patches/u-boot-pinebook-dts.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable.
* gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported
variable.
* gnu/system/install.scm (pinebook-installation-os): New exported variable.
2018-11-22 21:59:05 +01:00
Ricardo Wurmus 37751b480f
gnu: podofo: Add patch to fix build.
* gnu/packages/patches/podofo-cmake-3.12.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (podofo)[source]: Add patch.
2018-11-22 21:56:41 +01:00
Marius Bakke 7ff3f3d22c
gnu: python-scikit-learn: Update to 0.20.1.
* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files.  Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
2018-11-22 17:02:47 +01:00
Efraim Flashner 9cf4ff199c
Merge remote-tracking branch 'origin/master' into core-updates 2018-11-21 19:41:43 +02:00
Ludovic Courtès e555bbfc48
gnu: emacs-pdf-tools: Fix build with recent Poppler.
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21 17:38:00 +01:00
Ludovic Courtès e1f7912761
gnu: casync: Fix build with glibc 2.28.
* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21 17:38:00 +01:00
Efraim Flashner 5e369f8ab9
gnu: Add pinentry-efl.
* gnu/packages/gnupg.scm (pinentry-efl): New variable.
* gnu/packages/patches/pinentry-efl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-11-20 12:38:57 +02:00
Marius Bakke 4f70db97a0
Merge branch 'master' into core-updates 2018-11-20 01:14:12 +01:00
Marius Bakke 9acfe275ad
gnu: Add missing patch to local.mk.
This line was removed by accident in 0a41123f01.

* gnu/local.mk (dist_patch_DATA): Add "clang-3.5-libc-search-path.patch".
2018-11-20 01:11:26 +01:00
Ludovic Courtès af50b4abc0
gnu: qt@5: Fix build failure on glibc 2.28.
* gnu/packages/patches/qt-5-renameat2.patch: New file.
* gnu/packages/qt.scm (qt)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-18 12:28:34 +01:00
Eric Bavier 0a41123f01
gnu: Add ClamAV.
* gnu/packages/antivirus.scm: New file.
* gnu/packages/patches/clamav-system-tomsfastmath.patch,
gnu/packages/patches/clamav-config-llvm-libs.patch: New files.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new module.
(dist_patch_DATA): Add patches.

Co-authored-by: Christopher Baines <mail@cbaines.net>
2018-11-17 00:20:44 -06:00
Eric Bavier 7ed018e8a2
gnu: Add TomsFastMath.
* gnu/packages/multiprecision.scm (tomsfastmath): New variable.
* gnu/packages/patches/tomsfastmath-constness.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-17 00:20:44 -06:00
Maxim Cournoyer 03592a6f88
gnu: emacs-realgud: Patch configure.ac to repair the build.
This fixes https://bugs.gnu.org/33196, a build problem caused by a defective
Elisp snippet in a check in configure.ac.

* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
2018-11-15 22:42:35 -05:00
Marius Bakke 79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari 021bf6af18
gnu: Poppler: Fix CVE-2018-19149.
* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
2018-11-13 11:28:23 -05:00
Marius Bakke 8c5749f1b5
gnu: python-cffi: Fix test failure on i686.
* gnu/packages/patches/python-cffi-x87-stack-clean.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libffi.scm (python-cffi)[source](patches): Add it.
2018-11-11 17:18:05 +01:00
Efraim Flashner 95176544d5
gnu: python-paste: Update to 3.0.4.
* gnu/packages/python-web.scm (python-paste): Update to 3.0.4.
[source]: Remove patch, add snippet to remove one test.
[native-inputs]: Add python-pytest, python-pytest-runner.
* gnu/packages/patches/python-paste-remove-website-test.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-11 11:13:56 +02:00
Efraim Flashner 5ac2b2717f
gnu: python-networkx2: Remove variable.
* gnu/packages/python.scm (python-networkx2): Remove variable.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-11 11:13:55 +02:00
Mark H Weaver 3b14494616
gnu: icecat: Update to 60.3.0-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 60.3.0-gnu1.
[source]: Switch back to the normal source URI.  Remove patches that
are no longer applicable.
* gnu/packages/patches/icecat-CVE-2018-12383.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-10 20:28:32 -05:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Kei Kebreau e4b62e229e
gnu: wxmaxima: Update to 18.10.1.
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-11-09 01:09:06 -05:00
Efraim Flashner b44b1f08f6
gnu: hplip: Remove bundled non-free blobs.
This fixes <https://bugs.gnu.org/32184>.

* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-11-07 23:16:02 +02:00
Marius Bakke 55174e668f
Merge branch 'master' into core-updates 2018-11-07 21:09:57 +01:00
Marius Bakke 1badc85068
gnu: ceph: Update to 13.2.2.
* gnu/packages/patches/ceph-skip-unittest_blockdev.patch: Adjust for 13.2.2.
* gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file.
* gnu/packages/patches/ceph-detect-rocksdb.patch,
gnu/packages/patches/ceph-volume-respect-PATH.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 13.2.2.
[source]: Don't remove src/dpdk, which has been moved to src/spdk/dpdk and
is purged elsewhere.  Drop bundled rapidjson.  Adjust patch list.
[arguments]: Add "-DWITH_MGR_DASHBOARD_FRONTEND=OFF" and "-DWITH_SPDK=OFF" to
 #:configure-flags.   Drop obsolete "-DWITH_EMBEDDED".  Add workaround for
<https://bugs.gnu.org/30756>.  Remove obsolete test substitution.  Rework
'wrap-python-script' to be less verbose and wrap more scripts.
[native-inputs]: Add GCC-7.
[inputs]: Add OATH-TOOLKIT, RAPIDJSON and PYTHON2-SIX.
2018-11-07 21:01:12 +01:00
Ricardo Wurmus 152bebd9e0
gnu: gemma: Update to 0.98.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gemma-intel-compat.patch: Remove file.
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.
[source]: Remove patch.
[inputs]: Add eigen, gfortran:lib, and openblas.
[arguments]: Add phase "find-eigen".
2018-11-07 20:26:46 +01:00
Ludovic Courtès 4cceb1432a
gnu: libgit2: Work around test failures on 32-bit platforms.
* gnu/packages/patches/libgit2-oom-test.patch: New file.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06 17:08:46 +01:00
Tobias Geerinckx-Rice 418dd6adb5
gnu: jq: Update to 1.6.
* gnu/packages/web.scm (jq): Update to 1.6.
[source]: Remove upstreamed patch.
* gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-06 15:34:36 +01:00
Marius Bakke 3bd83e6db2
gnu: qtbase: Remove obsolete patch.
This patch is no longer needed since 7930cfc989
was merged to core-updates.

* gnu/packages/patches/qtbase-glibc-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/qt.scm (qtbase)[source](patches): Drop it.
2018-11-06 00:04:31 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Marius Bakke 208e82297c
gnu: xapian: Update to 1.4.9.
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
2018-11-05 23:46:38 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726.
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-31 21:57:02 +02:00
Tobias Geerinckx-Rice 1d9a9d27ae
gnu: meandmyshadow: Update to 0.5.
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-31 02:31:18 +01:00
Efraim Flashner 24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4.
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-30 11:15:39 +02:00
Efraim Flashner 20a3df0fd3
gnu: mailutils: Update to 3.5.
* gnu/packages/mail.scm (mailutils): Update to 3.5.
[source]: Remove patch, remove snippet.
[native-inputs]: Remove flex, bison.
[inputs]: Remove guile-2.0, add guile-2.2.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-28 00:02:08 +03:00
Tomáš Čech e9a041577a
gnu: Add telegram-purple.
* gnu/packages/messaging.scm (telegram-purple): New variable.
* gnu/packages/patches/telegram-purple-adjust-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-10-27 16:39:29 +02:00
Nikolai Merinov e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues.
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
2018-10-26 18:11:15 +02:00
Pierre Neidhardt 247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
2018-10-24 12:27:59 +02:00
Marius Bakke c166a88dea
Merge branch 'master' into core-updates 2018-10-22 23:07:16 +02:00
Meiyo Peng 9861bcd182
gnu: liblxqt: Update to 0.13.0.
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Ricardo Wurmus 7a1e62ca67
gnu: delly: Update to 0.7.9.
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 7321920cd3
gnu: crossmap: Update to 0.2.9.
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 9a6808e0c0
gnu: tophat: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Marius Bakke b6b3e5120a
gnu: libgxps: Update to 0.3.0.
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-10-21 17:57:01 +02:00
Christopher Baines 0d3f170864
gnu: Add soundconverter.
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-20 12:24:50 +01:00
Marius Bakke e8ef3cc4d6
gnu: swig: Fix build on i686.
* gnu/packages/patches/swig-guile-gc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/swig.scm (swig)[source](patches): Use it.
2018-10-18 19:13:13 +02:00
Marius Bakke 16f14f63db
gnu: Python: Adjust grafts for core-updates merge.
This adjust the grafts from a55ebe2e3a and
90aeaee861 to apply to Python 2.7.15 and 3.7.0.

* gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/python.scm (python-2/fixed): Remove patches that are already
present in 2.7.15.
(python-3/fixed): Remove obsolete phase.
2018-10-17 20:53:24 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Marius Bakke a55ebe2e3a
gnu: python2: Add upstream security fixes.
This addresses CVE-2018-{1060,1061,14647,1000802}.

* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
2018-10-17 20:34:37 +02:00
Marius Bakke 90aeaee861
gnu: python: Fix CVE-2018-14647.
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
2018-10-17 20:34:37 +02:00
Clément Lassieur f1376bfabe
gnu: emacs-exwm: Update to 0.20.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
2018-10-16 11:10:04 +02:00
Efraim Flashner 0627f93db6
gnu: clang-runtime: Adapt for glibc@2.28.
* gnu/packages/llvm.scm (clang-runtime@3.7, clang-runtime@3.8,
clang-runtime@3.9)[patches]: Add patch to work around removed ustat.h.
* gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-10-15 21:45:32 +03:00
Efraim Flashner b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux.
* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
2018-10-15 11:40:34 +03:00
Tobias Geerinckx-Rice dfe05297f3
gnu: x265: Update to 2.9.
* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-15 06:19:37 +02:00
Efraim Flashner 0ea6af996b
gnu: python-testtools: Fix regression in test suite.
* gnu/packages/check.scm (python-testtools)[source]: Add patch.
* gnu/packages/patches/python-testtools.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-10-11 22:34:20 +03:00
Efraim Flashner e4c399fe15
gnu: clisp: Update to 2.49.92.
* gnu/packages/lisp.scm (clisp): Update to 2.49.92.
[source]: Switch to git-fetch. Remove unneeded patch.
[arguments]: Remove '--enable-portability' flag, add CFLAGS for
armhf-linux. Update list of files needing substitutions in custom
'patch-sh-and-pwd phase.
[home-page]: Update to new home-page.
* gnu/packages/patches/clisp-glibc-2.26.patch: Remove file.
& gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-10 10:41:37 +03:00
Tobias Geerinckx-Rice de68ad095d
gnu: zstd: Update to 1.3.6.
* gnu/packages/compression.scm (zstd): Update to 1.3.6.
[source]: Remove merged patches.
* gnu/packages/patches/zstd-fix-stdin-list-test.patch,
gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-10-09 05:42:14 +02:00
Leo Famulari e8bd1946ec
Merge branch 'master' into core-updates 2018-10-07 20:49:14 -04:00
Leo Famulari 247537da81
gnu: borg: The backup client cannot override the server-side storage quota.
* gnu/packages/patches/borg-respect-storage-quota.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
2018-10-07 13:57:32 -04:00
Jan Nieuwenhuizen 236fadf528
gnu: mes: Update to 0.18.
* gnu/packages/patches/mes-nyacc-0.86.0.patch: Removef file.
* gnu/local.mk (dist_patch_DATA): Remove entry.
* gnu/packages/mes.scm (mes): Update to 0.18.
2018-10-07 16:30:50 +02:00
Danny Milosavljevic 2c4be1add0
gnu: Add java-w3c-smil.
* gnu/packages/batik.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-10-07 14:14:13 +02:00
Kei Kebreau 73ca145a7e
gnu: gnucash: Update to 3.3.
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
2018-10-05 13:41:08 -04:00
Tobias Geerinckx-Rice fc4738149f
gnu: Add bastet.
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-05 19:32:45 +02:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Julien Lepiller c336567dad
gnu: postgresql: Fix finding extensions.
* gnu/packages/patches/postgresql-disable-resolve_symlinks.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (postgresql)[source]: Use it.
2018-10-04 22:26:02 +02:00
Eric Bavier 43eb42ef01
quilt: Remove test workarounds.
* gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch,
gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/patchutils.scm (quilt)[source]: Use them.
[arguments]: Remove workarounds in 'patch-tests' phase.
2018-10-03 10:45:02 -05:00
Eric Bavier 68faa20e2d
quilt: Upgrade to 0.65.
* gnu/packages/patches/quilt-test-fix-regex.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patchutils.scm (quilt)[version]: Upgrade to 0.65.
[source]: Use patch.
[arguments]: Adjust 'patch-tests' phase for new tests.  Re-enable "mail"
test.
2018-10-02 22:34:39 -05:00
Mark H Weaver 94e96f7f68
gnu: icecat: Unbundle libevent, libogg, and libvorbis.
* gnu/packages/patches/icecat-use-system-media-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Add
another hunk to enable removal of libevent.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  In the snippet, add
libevent, libogg, libvorbis, and libtremor to the list of bundled libraries to
remove.  Add a comment regarding theora.  Remove comments regarding unbundling
cairo, which is no longer supported.
[inputs]: Add libevent, libogg, and libvorbis.
[arguments]: Add --with-system-{libevent,ogg,vorbis} to configure flags.
Add custom bootstrap phase.  Add comments.
2018-09-25 19:59:06 -04:00
Mark H Weaver 257e324791
gnu: icecat: Unbundle graphite2 and harfbuzz.
* gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch: New file.
* gnu/packages/patches/icecat-use-system-graphite2.patch,
gnu/packages/patches/icecat-use-system-harfbuzz.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add new patch.  Delete
bundled graphite2 and harfbuzz in snippet.
[inputs]: Add graphite2 and harfbuzz.
[arguments]: Add --with-system-{graphite2,harfbuzz} to configure flags.
2018-09-25 19:58:58 -04:00
Marius Bakke 6a0427af6c
Merge branch 'master' into core-updates 2018-09-26 01:11:32 +02:00
Mark H Weaver ae71cd8ac9
gnu: icecat: Add fixes from upstream mozilla-esr60 [security fixes].
Includes fixes for CVE-2018-12383 and CVE-2018-12385.

* gnu/packages/patches/icecat-CVE-2018-12383.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to apply
cleanly to IceCat 60.
* gnu/packages/gnuzilla.scm (mozilla-patch): Update to fetch from
mozilla-esr60.
(icecat): Add selected changesets from upstream mozilla-esr60.
2018-09-22 13:48:32 -04:00
Ben Woodcroft 05fb1e0017
gnu: hmmer: Update to 3.2.1.
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin]: Remove patch.
[license]: Change to BSD-3.
[supported-systems]: New field.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-22 09:16:47 +10:00
Mark H Weaver e67ad5532f
gnu: icecat: Update to 60.2.0-gnu1 (pre-release).
* gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1.
[source]: Download pre-release from alpha.gnu.org.  Remove obsolete patches.
Comment out the code to delete the bundled copies of libevent, cairo,
harfbuzz, and graphite2.
[inputs]: Use the latest ffmpeg.  Comment out libevent, cairo, harfbuzz, and
graphite2.
[native-inputs]: Add rust and cargo.
[arguments]: Remove --enable-gio and --disable-gnomeui.  Add --disable-stylo.
Comment out --with-system-{libevent,harfbuzz,graphite2}, --enable-system-cairo.
Import %cargo-build-system-modules.  Add 'patch-cargo-checksums' phase.
* gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch,
gnu/packages/patches/icecat-bug-1413868-pt1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-21 07:16:02 -04:00
Mark H Weaver c5327efb97
gnu: libvpx: Add upstream security fix.
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
2018-09-21 07:15:59 -04:00
Ricardo Wurmus 89ee8a6edf
gnu: rsem: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-20 17:55:26 +02:00
Marius Bakke 2817ac3c18
Merge branch 'master' into core-updates 2018-09-20 13:37:58 +02:00
Marius Bakke c5c1e410cf
gnu: Reinstate xf86-video-ast.
* gnu/packages/patches/xf86-video-ast-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-ast): New public variable.
2018-09-19 15:20:21 +02:00
Leo Famulari 9e9e5d5a26
gnu: OpenSSL 1.1: Update to 1.1.1.
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1.
[arguments]: Patch a `/usr/bin/env` invocation in the 'config' script.
Adjust the documentation output.
* gnu/packages/patches/openssl-1.1.0-c-rehash-in.patch: Rename and ...
* gnu/packages/patches/openssl-1.1-c-rehash-in.patch: ... adjust patch.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-09-14 16:51:49 -04:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Danny Milosavljevic 6fe73b487b
gnu: rust: Accept more detailed gdb responses.
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.25): Use it.
(rust-1.26): Use it.
(rust): Use it.
2018-09-13 17:17:15 +02:00
Eric Bavier 50b3b83143
netsurf: Register patch.
Follow-up to f9e140a243.

* gnu/local.mk (dist_patch_DATA): Add netsurf-message-timestamp.patch.
2018-09-11 20:29:04 -05:00
Tobias Geerinckx-Rice 7c8b1bf664
gnu: python-genshi: Update to 0.7.1.
* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch,
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch,
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch,
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch,
gnu/packages/patches/python-genshi-isstring-helper.patch,
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-10 18:21:59 +02:00
Pjotr Prins 98d6543f86
gnu: Rename ldc.scm to dlang.scm.
* gnu/packages/ldc.scm: Rename to...
* gnu/packages/dlang.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2018-09-10 17:47:52 +02:00
Pjotr Prins 633e8aab69
gnu: ldc: Update to 1.10.0.
* gnu/packages/ldc.scm (ldc): Update to 1.10.0.
[native-inputs]: Switch to LLVM and CLANG.
(ldc-bootstrap)[synopsis, description]: Tweak.
* gnu/packages/patches/ldc-disable-phobos-tests.patch: New file.
* gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-10 17:47:52 +02:00
Ludovic Courtès 19de8273ee
services: tailon: Move to (gnu services web).
This allows (gnu services admin) to remain deeper in the module graph
and to be used by (gnu services web).

* gnu/services/admin.scm (<tailon-configuration-file>)
(tailon-configuration-files-string)
(tailon-configuration-file-compiler, <tailon-configuration>)
(tailon-shepherd-service, %tailon-accounts)
(tailon-service-type): Move to...
* gnu/services/web.scm: ... here.
* gnu/tests/admin.scm: Remove.  Move test to...
* gnu/tests/web.scm (%tailon-os)
(run-tailon-test, %test-tailon): ... here.
2018-09-10 12:12:50 +02:00
Marius Bakke fe79ce3b1f
Merge branch 'master' into core-updates 2018-09-10 01:37:32 +02:00
Leo Famulari ced98c7e89
gnu: libgd: Fix CVE-2018-{5711,1000222}.
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd/fixed): New variable.
* gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
2018-09-09 18:13:19 -04:00
Marius Bakke 6bbbdb1a34
gnu: oath-toolkit: Fix FTBFS with Glibc >= 2.28.
* gnu/packages/patches/oath-toolkit-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/authentication.scm (oath-toolkit)[source](patches): New field.
2018-09-09 17:59:34 +02:00
Marius Bakke 0171019418
gnu: openssl: Update to 1.0.2p.
* gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch,
gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/tls.scm (openssl): Update to 1.0.2p.
[source](patches): Remove obsolete.
2018-09-09 17:57:39 +02:00
Marius Bakke 842c44c974
gnu: ghostscript: Remove graft for 9.24.
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch,
gnu/packages/patches/ghostscript-runpath.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.24.
(ghostscript/fixed): Remove variable.
2018-09-09 17:54:32 +02:00
Marius Bakke 0aeb134850
Merge branch 'master' into core-updates 2018-09-09 17:40:35 +02:00
Marius Bakke 0084744b3a
gnu: ghostscript: Update replacement to 9.24 [security fixes].
The following CVEs are fixed with this release: CVE-2018-15908,
CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509,
CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539,
CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543.

* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file.
* gnu/packages/patches/ghostscript-CVE-2018-16509.patch,
gnu/packages/patches/ghostscript-bug-699708.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24.
[source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and
'ghostscript-runpath.patch'.  Add 'ghostscript-CVE-2018-16509.patch' and
'ghostscript-bug-699708.patch'.
[arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output
directory.
2018-09-09 16:43:11 +02:00
Jan Nieuwenhuizen c665774a1c
gnu: mes: Update to 0.17.1.
* gnu/packages/patches/mes-nyacc-0.86.0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (mes): Update to 0.17.1, depend on latest Nyacc 0.86.0.
(nyacc-for-mes): Remove.
2018-09-08 20:36:30 +02:00
Jan Nieuwenhuizen 445ecce923
gnu: nyacc: Update to 0.86.0.
* gnu/packages/patches/nyacc-binary-literals.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (nyacc): Update to 0.86.0, add patch.
2018-09-08 20:36:30 +02:00
Marius Bakke 70dc8db8e7
Merge branch 'master' into core-updates 2018-09-03 19:20:06 +02:00
Marius Bakke fcde1d27bb
gnu: openexr: Update to 2.3.0.
* gnu/packages/graphics.scm (openexr): Update to 2.3.0.
[source](uri): Change to new download location.
[source](snippet): Remove workaround.
[source](patches): Remove.
* gnu/packages/patches/openexr-missing-samples.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-03 18:58:47 +02:00
Alex Vong 2bd6ed9e4c
gnu: haskell-mode: Fix test failure.
Fixes <https://bugs.gnu.org/31726>.

Thanks to Jack Hill <jackhill@jackhill.us> for exploring different solutions
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31726>.

* gnu/packages/patches/haskell-mode-unused-variables.patch,
gnu/packages/patches/haskell-mode-make-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/emacs.scm (haskell-mode)[source]: Use them.
[arguments]: Adjust 'pre-build' phase to embed file name.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-09-02 17:06:43 +02:00
Danny Milosavljevic 3159ef7c99
gnu: rust: Bootstrap (only) Rust 1.19.0 by mrustc.
* gnu/packages/patches/rust-1.19-mrustc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.19)[source]: Add patch
"rust-1.19-mrustc.patch".
[arguments]<#:modules>: New field.
<#:phases>[patch-cargo-tomls]: New phase.
<#:phases>[build]: Modify.
<#:phases>[install]: Modify.
[native-inputs]: Replace rust-bootstrap by mrustc.
(rust-1.23)[native-inputs]: New field.
[arguments]<#:phases>: Delete phase "patch-cargo-tomls".
2018-09-02 00:09:34 +02:00
Marius Bakke 279ed3efee
gnu: qtbase: Fix build with glibc >= 2.28.
* gnu/packages/patches/qtbase-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtbase)[source](patches): Use it.
[arguments]: Remove "--no-feature-renameat2" from #:configure-flags.
2018-09-01 13:00:01 +02:00
Marius Bakke 3469a5ea47
gnu: gcc@4.9: Fix FTBFS with Glibc >= 2.28.
* gnu/packages/commencement.scm (gcc-for-libstdc++): New variable.
(libstdc++-boot0): Inherit from GCC-FOR-LIBSTDC++ instead of GCC-4.9.
* gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add
"gcc-4.9-libsanitizer-ustat.patch".
* gnu/packages/patches/gcc-4.9-libsanitizer-ustat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-09-01 12:58:47 +02:00
Marius Bakke a446cf26d7
gnu: texinfo@5: Fix FTBFS with Perl >= 5.28.
* gnu/packages/patches/texinfo-5-perl-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/texinfo.scm (texinfo-5)[source](patches): New field.
2018-09-01 12:56:52 +02:00
Tobias Geerinckx-Rice aadd1d241c
gnu: Add ddcutil.
* gnu/packages/hardware.scm: New file.
(ddcutil): New public variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add the new file.
2018-08-30 19:28:10 +02:00
Tobias Geerinckx-Rice 16de7f15cb
gnu: snappy: Optimise.
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-30 00:51:11 +02:00
Marius Bakke 9e17757ff5
Revert "gnu: snappy: Optimise."
This causes too many rebuilds for the master branch.

This reverts commit f96ed06805.
2018-08-29 16:58:54 +02:00
Tobias Geerinckx-Rice f96ed06805
gnu: snappy: Optimise.
* gnu/packages/compression.scm (snappy)[source]: Build with ‘-O2’.
* gnu/package/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-28 22:30:59 +02:00
Leo Famulari 8a5a1eff42
gnu: dropbear: Fix CVE-2018-15599.
* gnu/packages/patches/dropbear-CVE-2018-15599.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (dropbear)[source]: Use it.
2018-08-28 14:44:11 -04:00
Marius Bakke d9362003b6
gnu: GRUB: Adjust to recent binutils changes.
* gnu/packages/patches/grub-binutils-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
2018-08-28 01:23:12 +02:00
Marius Bakke 61fca0fd22
Merge branch 'master' into core-updates 2018-08-28 01:22:24 +02:00
Marius Bakke 526ce41930
gnu: GRUB: Check for errors from efibootmgr.
* gnu/packages/patches/grub-check-error-efibootmgr.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bootloaders.scm (grub)[source](patches): New field.
2018-08-28 01:19:28 +02:00
Leo Famulari 6635a3cc7f
gnu: python-pygit2: Update to 0.26.4.
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-27 15:13:46 -04:00
Marius Bakke cbc8a92011
gnu: cairo: Fix undefined behaviour.
This fixes <https://bugs.freedesktop.org/show_bug.cgi?id=104325> which showed
up in Guix as an infinite loop during cairocffi tests.

* gnu/packages/patches/cairo-setjmp-wrapper.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gtk.scm (cairo)[source](patches): Add it.
2018-08-27 20:17:16 +02:00
Marius Bakke 397334d977
gnu: python-pillow: Update to 5.2.0.
* gnu/packages/patches/python-pillow-fix-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pillow): Update to 5.2.0.
[source](patches, patch-flags): Remove.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Adjust custom check phase accordingly.
2018-08-27 16:49:05 +02:00
Marius Bakke 8d48f358e9
gnu: parted: Fix build with glibc >= 2.28.
* gnu/packages/patches/parted-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/disk.scm (parted)[source](patches): New field.
2018-08-26 16:20:04 +02:00
Kei Kebreau 7d01ee66d4
gnu: Add avogadro.
* gnu/packages/chemistry.scm (avogadro): New variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-08-25 17:05:30 -04:00
Marius Bakke c37e932764
gnu: gdb: Remove obsolete patch.
* gnu/packages/patches/gdb-python-3.7.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gdb.scm (gdb)[source](patches): Remove field.
2018-08-25 19:23:35 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Marius Bakke 2fa4066c0a
gnu: findutils: Fix build with glibc 2.28.
* gnu/packages/patches/findutils-gnulib-libio.patch,
gnu/packages/patches/findutils-makedev.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (findutils)[source](patches): Use them.
2018-08-25 16:23:36 +02:00
Marius Bakke 95895d53b0
gnu: m4: Fix FTBFS with glibc >= 2.28.
* gnu/packages/patches/m4-gnulib-libio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/m4.scm (m4)[source](patches): New field.
2018-08-25 16:23:36 +02:00
Marius Bakke 1aef659e86
gnu: gcc: Fix build with glibc >= 2.28.
* gnu/packages/patches/gcc-libsanitizer-ustat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gcc.scm (gcc-5)[source](patches): Add it.
2018-08-25 16:23:36 +02:00
Marius Bakke e13b547407
gnu: glibc: Update to 2.28.
* gnu/packages/patches/glibc-2.28-git-fixes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux): Update to 2.28.
[source](patches): Add 'glibc-2.28-git-fixes.patch'.  Remove 2.27 equivalent.
(glibc-2.28): Remove variable.
(glibc-2.27): New public variable
2018-08-25 16:23:35 +02:00
Leo Famulari 36a8d5cdf4
gnu: OpenSSH: Update to 7.8p1.
* gnu/packages/ssh.scm (openssh): Update to 7.8p1.
[source]: Remove 'openssh-CVE-2018-15473.patch'.
* gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-24 17:04:58 -04:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046.
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22 15:40:08 -04:00
Leo Famulari 373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}.
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
2018-08-22 13:38:39 -04:00
Marius Bakke fb76ef8477
gnu: Remove GCC ICE workarounds.
* gnu/packages/patches/doxygen-gcc-ice.patch,
gnu/packages/patches/mariadb-gcc-ice.patch,
gnu/packages/patches/perf-gcc-ice.patch: Delete files
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Likewise.
* gnu/packages/linux.scm (perf)[source](patches): Likewise.
* gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
2018-08-22 18:01:09 +02:00
Leo Famulari 6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21 11:16:30 -04:00
Ludovic Courtès 0b93d04ac5
gnu: gcc@4.8: Fix libsanitizer build issue.
Fixes <https://bugs.gnu.org/32397>.
Reported by fis trivial <ybbs.daans@hotmail.com>.

* gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-08-19 18:21:24 +02:00
Marius Bakke a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Tobias Geerinckx-Rice 8cd80a4b61
gnu: eigen: Update to 3.3.5.
* gnu/packages/algebra.scm (eigen): Update to 3.3.5.
[source]: Remove upstreamed ARM patch and obsolete substitutions.
* gnu/packages/patches/eigen-arm-neon-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-18 16:40:31 +02:00
Kei Kebreau b66741edc9
gnu: octave: Update to 4.4.1.
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17 10:47:52 -04:00
Tobias Geerinckx-Rice c4f8953a12
gnu: lxc: Update to 3.0.2.
* gnu/packages/virtualization.scm (lxc): Update to 3.0.2.
[source]: Remove patch.
* gnu/packages/patches/lxc-CVE-2018-6556.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17 05:19:05 +02:00
Konrad Hinsen e0b49c785b
gnu: racket: Update to 7.0.
* gnu/packages/scheme.scm (racket): Update to 7.0.
[inputs]: Add libedit.
[arguments]: Update the list of FFI library references to patch.
[source]: Remove 'racket-fix-xform-issue.patch'.
* gnu/packages/patches/racket-store-checksum-override.patch: Adjust.
* gnu/packages/patches/racket-fix-xform-issue.patch: Delete file.
* gnu/local.mk: Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 18:36:09 -04:00
Björn Höfling 4866cba66a
gnu: libgcrypt: Make build reproducible.
* gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (libgcrypt)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-16 17:09:46 -04:00
Tobias Geerinckx-Rice 1dfb14d2f7
gnu: btrfs-progs: Update to 4.17.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.17.1.
[source]: Remove patch.
[native-inputs]: Add python.
* gnu/packages/patches/btrfs-progs-e-value-block.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-16 22:21:53 +02:00
Tobias Geerinckx-Rice 76c888cb94
gnu: e2fsprogs: Update to 1.44.3.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3.
[source]: Remove glibc-2.27 patch.
(extundelete)[source]: Apply e2fsprogs-1.44 patch.
* gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Delete file...
* gnu/local.mk (dist_patch_DATA): ...remove it, and add...
* gnu/packages/patches/extundelete-e2fsprogs-1.44.patch: ...this new
file.
2018-08-16 22:21:53 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Tobias Geerinckx-Rice 5dc8437fc0
gnu: qemu: Update to 3.0.0 [mitigate CVE-2018-3639].
* gnu/packages/virtualization.scm (qemu): Update to 3.0.0.
[source]: Remove patch.
* gnu/packages/patches/qemu-CVE-2018-11806.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-16 02:41:42 +02:00
Arun Isaac de30205ba0
gnu: services: Add pcscd service.
* gnu/services/security-token.scm: New file.
* gnu/tests/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new files.
* doc/guix.texi (Miscellaneous Services): Document the service.
2018-08-16 02:46:27 +05:30
Pierre Langlois 7bcc34050b
gnu: clementine: Fix creating initial database.
It seems a recent version of sqlite broke Clementine's first startup. It turns
out we can patch clementine to fix the problem instead of providing a different
sqlite package:
<https://github.com/clementine-player/Clementine/pull/5669>

* gnu/packages/databases.scm (sqlite-with-fts3): Remove.
* gnu/packages/music.scm (clementine)[inputs]: Replace sqlite-with-fts3 with
sqlite.
[source]: Add clementine-fix-sqlite.patch.
* gnu/packages/patches/clementine-fix-sqlite.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-15 14:29:56 -04:00
Tobias Geerinckx-Rice d87e547702
gnu: openssl@1.1: Update to 1.1.0i [fix CVE-2018-0737].
Also includes a fix for CVE-2018-0732, and a different approach to
fixing CVE-2018-0495.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0i.
[sources]: Remove CVE patches.
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0495.patch: Delete...
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0732.patch: ...both files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-08-15 00:35:53 +02:00
Leo Famulari feccc81013
gnu: gdm: Fix CVE-2018-14424.
* gnu/packages/patches/gdm-CVE-2018-14424.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gdm): Use it.
2018-08-14 16:52:48 -04:00