Commit Graph

2037 Commits

Author SHA1 Message Date
Ricardo Wurmus ff9d1a2f0c
Merge branch 'master' into core-updates 2018-02-18 00:39:25 +01:00
Marius Bakke 26176bee23
gnu: python-waitress: Update to 1.1.0.
* gnu/packages/patches/python-waitress-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-waitress): Update to 1.1.0.
[source](patches): New field.
2018-02-17 20:49:39 +01:00
Ben Woodcroft bb3359ab8e
gnu: ruby-2.4.3: Update rubygems to 2.7.6.
This fixes the security issues described at
https://www.ruby-lang.org/en/news/2018/02/17/multiple-vulnerabilities-in-
rubygems/

* gnu/packages/patches/ruby-rubygems-276-for-ruby24.patch: New file.
* gnu/packages/ruby.scm (ruby-2.4.3)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-02-18 00:48:50 +10:00
Mark H Weaver 150062f190
Merge branch 'master' into core-updates 2018-02-16 13:14:26 -05:00
Danny Milosavljevic f6cccefed5
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5.
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
2018-02-16 12:41:01 -05:00
Danny Milosavljevic a124e4258a
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5.
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
2018-02-15 17:27:50 +01:00
Pierre Langlois 6ca15c9ef6
gnu: crypto++: Update to 6.0.0.
* gnu/packages/crypto.scm (crypto++): Update to 6.0.0.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-15 10:23:42 +01:00
Mark H Weaver 02843215d8
gnu: shepherd: 'herd status' now sorts the result.
Add a patch by Ludovic Courtès <ludo@gnu.org> from the upstream
shepherd repository to partially fix <https://bugs.gnu.org/30299>.

* gnu/packages/patches/shepherd-herd-status-sorted.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Add patch.
2018-02-14 03:42:02 -05:00
Mark H Weaver 288b8fd5e9
Merge branch 'master' into core-updates 2018-02-13 13:17:15 -05:00
Rutger Helling 171c7642b8
gnu: mpv: Update to 0.28.1 [fixes CVE-2018-6360].
* gnu/packages/video.scm (mpv): Update to 0.28.1.
2018-02-13 10:13:40 +01:00
Mark H Weaver a7fb298665
Merge branch 'master' into core-updates 2018-02-11 04:05:07 -05:00
Leo Famulari 31c7002b46
gnu: libtasn1: Fix CVE-2018-6003.
* gnu/packages/patches/libtasn1-CVE-2018-6003.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2018-02-10 23:01:56 -05:00
Leo Famulari 79cf105304
gnu: libtiff: Fix CVE-2017-{9935,11335,18013}.
* gnu/packages/patches/libtiff-CVE-2017-9935.patch,
gnu/packages/patches/libtiff-CVE-2017-11335.patch,
gnu/packages/patches/libtiff-CVE-2017-18013.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[replacement]: New field.
(libtiff/fixed): New variable.
2018-02-10 22:58:19 -05:00
Julien Lepiller 6d0368eb84
gnu: Add java-xerces.
* gnu/packages/java.scm (java-xerces): New variable.
* gnu/packages/patches/java-xerces-bootclasspath.patch: New file.
* gnu/packages/patches/java-xerces-build_dont_unzip.patch: New file.
* gnu/packages/patches/java-xerces-xjavac_taskdef.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-02-10 19:04:04 +01:00
Oleg Pykhalov 61995dce50
gnu: emacs-browse-at-remote: Patch for GNU Cgit support.
* gnu/packages/patches/emacs-browse-at-remote-cgit-gnu.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs-browse-at-remote)[source](patches): Use it.
2018-02-09 22:15:21 +03:00
Pierre Langlois af414f34fb
gnu: clementine: Remove Spotify downloader.
Clementine has a button in the preference menu that allows downloading a
binary blob to add support for Spofify.  Let's remove this button.  It turns
out this is the only part of the code base that uses crypto++, let's remove
this dependency too.

* gnu/packages/music.scm (clementine)[arguments]: Remove crypto++ support. Set
HAVE_SPOTIFY_DOWNLOADER to FALSE.
[inputs]: Remove crypto++ input.
* gnu/packages/patches/clementine-remove-crypto++-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-09 13:32:08 -05:00
Marius Bakke 165c8b2adc
gnu: zziplib: Update to 0.13.68.
* gnu/packages/patches/zziplib-CVE-2017-5974.patch,
gnu/packages/patches/zziplib-CVE-2017-5975.patch,
gnu/packages/patches/zziplib-CVE-2017-5976.patch,
gnu/packages/patches/zziplib-CVE-2017-5978.patch,
gnu/packages/patches/zziplib-CVE-2017-5979.patch,
gnu/packages/patches/zziplib-CVE-2017-5981.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/compression.scm (zziplib): Update to 0.13.68.
[source](patches): Remove.
[arguments]: Remove #:parallel-tests?.  Set #:tests? #f.
2018-02-09 16:43:49 +01:00
Marius Bakke ce2cfcabfc
gnu: python-pandas: Update to 0.22.0.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Delete file.
* gnu/packages/python.scm (python-pandas): Update to 0.22.0.
[source](patches): Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-LXML.
[arguments]: Replace CHECK-PHASE with custom pytest invocation.
[home-page]: Use HTTPS.
2018-02-09 14:44:49 +01:00
Mark H Weaver 110afddee8
gnu: icecat: Use system harfbuzz and graphite2 libraries.
* gnu/packages/patches/icecat-use-system-harfbuzz.patch,
gnu/packages/patches/icecat-use-system-graphite2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.  Delete
"gfx/harfbuzz" and "gfx/graphite2" in the snippet.
[inputs]: Add harfbuzz and graphite2.
[arguments]: Add "--with-system-harfbuzz" and "--with-system-graphite2" to
configure-flags.
2018-02-09 01:53:07 -05:00
Mark H Weaver efe2a2833c
Merge branch 'master' into core-updates 2018-02-09 01:46:34 -05:00
Alex Vong e61da2e884
gnu: mpv: Fix CVE-2018-6360.
* gnu/packages/patches/mpv-CVE-2018-6360-1.patch,
gnu/packages/patches/mpv-CVE-2018-6360-2.patch,
gnu/packages/patches/mpv-CVE-2018-6360-3.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/video.scm (mpv)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-08 15:18:21 -05:00
Tobias Geerinckx-Rice f81b6e7703
gnu: libtirpc: Update to 1.0.2.
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.2.
[patches]: Remove patch for fixed CVE.
* gnu/packages/patches/libtirpc-CVE-2017-8779.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-08 18:21:08 +01:00
Tobias Geerinckx-Rice 906f1b48e2
gnu: luajit: Update to 2.1.0-beta3.
* gnu/packages/lua.scm (luajit): Update to 2.1.0-beta3.
[source]: Remove symlinks patch.
* gnu/packages/patches/luajit-symlinks.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-08 05:01:42 +01:00
Leo Famulari 0b18c0b0de
gnu: mupdf: Fix CVE-2017-17858.
* gnu/packages/patches/mupdf-CVE-2017-17858.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf)[source]: Use it.
2018-02-07 21:17:57 -05:00
Ludovic Courtès 71e789319c
gnu: hwloc: Add 2.0.0.
* gnu/packages/mpi.scm (hwloc-2.0): New variable.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-02-06 17:34:34 +01:00
Mathieu Othacehe 924b96db0a
gnu: gpsbabel: Update to 1.5.4 and fix build.
* gnu/packages/patches/gpsbabel-minizip.patch: New file.
* gnu/packages/patches/gpsbabel-qstring.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gps.scm (gpsbabel): Update to 1.5.4,
[source]: add two previous patches to fix build,
[snippet]: remove "gpsbabel" directory excursion,
[arguments]: ditto.
2018-02-06 15:50:09 +01:00
Leo Famulari a630c64709
gnu: p7zip: Fix CVE-2017-17969.
* gnu/packages/patches/p7zip-CVE-2017-17969.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/compression.scm (p7zip)[source]: Use it.
2018-02-05 16:21:40 -05:00
Marius Bakke bee7bb315c
Merge branch 'master' into core-updates 2018-02-01 13:18:47 +01:00
Leo Famulari 547c4bd23c
gnu: transmission: Update to 2.93.
* gnu/packages/bittorrent.scm (transmission): Update to 2.93.
[source]: Update URL and remove patch.
* gnu/packages/patches/transmission-fix-dns-rebinding-vuln.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-31 19:21:51 -05:00
Adam Van Ymeren 51f887f33d
gnu: python-axolotl: Update to 0.1.39 and fix build.
python-axolotl has been failing since March,
https://hydra.gnu.org/job/gnu/master/python-axolotl-0.1.35.x86_64-linux

This also fixes the OMEMO and OTR plugins for Gajim work.

* gnu/packages/patches/python-axolotl-AES-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-crypto.scm (python-axolotl): Upgrade to 0.1.39.
[source]: Use the patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-31 17:36:22 +01:00
Tobias Geerinckx-Rice b598965866
gnu: rsync: Update to 3.1.3.
* gnu/packages/rsync.scm (rsync): Update to 3.1.3.
[source]: Remove patches for fixed CVEs.
[properties]: Remove field.
* packages/patches/rsync-CVE-2017-16548.patch: Delete file.
* packages/patches/rsync-CVE-2017-17433.patch: Delete file.
* packages/patches/rsync-CVE-2017-17433-fix-tests.patch: Delete file.
* packages/patches/rsync-CVE-2017-17434-pt1.patch: Delete file.
* packages/patches/rsync-CVE-2017-17434-pt2.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-01-30 09:25:35 +01:00
Mark H Weaver b89d8a4271
Merge branch 'master' into core-updates 2018-01-26 00:15:26 -05:00
Tobias Geerinckx-Rice 218b94f3b8
gnu: reposurgeon: Update to 3.43.
* gnu/packages/version-control.scm (reposurgeon): Update to 3.43.
[source]: Add a patch needed to build the package.
[arguments]: Add ‘patch-inputs’ phase.
[native-inputs]: Replace docbook-xml-4.1.2 with the latest docbook-xml.
[inputs]: Add tzdata.
* gnu/packages/patches/reposurgeon-add-missing-docbook-files.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-01-26 00:09:19 +01:00
Leo Famulari 238f3a39a0
gnu: dovecot: Fix CVE-2017-15132.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (dovecot)[source]: Use it.
2018-01-25 13:37:19 -05:00
Ricardo Wurmus 7bf0170e9f
gnu: Update SELinux packages.
* gnu/packages/selinux.scm (libsepol): Update to 2.7, release 20170804.
[source]: Fetch from git.
(checkpolicy)[arguments]: Set LIBSEPOLA.
(libselinux)[arguments]: Likewise; remove build phase "patch-libsepol-path".
(python-sepolgen)[arguments]: Adjust directory name in "enter-dir".
(python-setools): Update to 4.1.1.
[source]: Fetch from git.
(policycoreutils)[source]: Remove patch.
[arguments]: Remove build phases "fix-glib-cflags",
"fix-linkage-with-libsepol", "fix-target-paths", and "wrap-python-tools".
[inputs]: Remove python-wrapper, python-sepolgen, python-setools, python-ipy,
libcap-ng, pcre, dbus, dbus-glib, and glib.
* gnu/packages/patches/policycoreutils-make-sepolicy-use-python3.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-25 00:36:57 +01:00
Ricardo Wurmus ca56021c26
gnu: Update SELinux packages.
* gnu/packages/selinux.scm (libsepol): Update to 2.7, release 20170804.
[source]: Fetch from git.
(checkpolicy)[arguments]: Set LIBSEPOLA.
(libselinux)[arguments]: Likewise; remove build phase "patch-libsepol-path".
(python-sepolgen)[arguments]: Adjust directory name in "enter-dir".
(python-setools): Update to 4.1.1.
[source]: Fetch from git.
(policycoreutils)[source]: Remove patch.
[arguments]: Remove build phases "fix-glib-cflags",
"fix-linkage-with-libsepol", "fix-target-paths", and "wrap-python-tools".
[inputs]: Remove python-wrapper, python-sepolgen, python-setools, python-ipy,
libcap-ng, pcre, dbus, dbus-glib, and glib.
* gnu/packages/patches/policycoreutils-make-sepolicy-use-python3.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-25 00:36:26 +01:00
Mark H Weaver 78dfc16139
Merge branch 'master' into core-updates 2018-01-24 06:23:33 -05:00
Mark H Weaver 52009dc3bd
gnu: icecat: Add more fixes from upstream mozilla-esr52.
Includes fixes for CVE-2018-5104, CVE-2018-5097, CVE-2018-5099, and the
remaining 7 out of 21 changesets for CVE-2018-5089.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.  Remove the local spectre mitigation patch
in favor of the (identical) changeset from upstream.
* gnu/packages/patches/icecat-bug-1427870-spectre-mitigation.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-24 05:59:01 -05:00
Mark H Weaver a102d359a6
Merge branch 'master' into core-updates 2018-01-23 17:01:07 -05:00
Leo Famulari c73a00a376
gnu: libsndfile: Fix CVE-2017-12562.
* gnu/packages/patches/libsndfile-CVE-2017-12562.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (libsndfile)[replacement]: New field.
(libsndfile/fixed): New variable.
2018-01-23 15:25:32 -05:00
Fis Trivial 457fc22dd3
gnu: rtags: Fix the bundling issue.
* gnu/packages/patches/rtags-separate-rct.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/code.scm (rtags): Dependencies no longer bundled.
[source]: Use tarball release.  Use the patch to link rct.
Substitute corresponding headers.
[native-inputs]: Add new dependencies.
[inputs]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-23 10:43:37 +01:00
Fis Trivial a893dc2f48
gnu: rct: Add missing headers, enable RTTI.
* gnu/packages/patches/rct-add-missing-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cpp.scm (rct): Use the patch, enable RTTI.
[source]: Use the patch to add missing headers from installation.
[arguments]: Enable RTTI in configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-23 10:28:27 +01:00
Kei Kebreau 75033216ea
gnu: clisp: Fix build with glibc 2.26.
* gnu/packages/patches/clisp-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lisp.scm (clisp)[source]: Use it.
2018-01-20 21:48:47 -05:00
Mark H Weaver e074a655dd
Merge branch 'master' into core-updates 2018-01-19 23:59:20 -05:00
Leo Famulari ccb5cac17b
gnu: libexif: Fix CVE-2016-6328.
* gnu/packages/patches/libexif-CVE-2016-6328.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (libexif)[source]: Use it.
2018-01-19 17:51:00 -08:00
Tobias Geerinckx-Rice 5bb12e1462
gnu: ninja: Update to 1.8.2.
* gnu/packages/ninja.scm (ninja): Update to 1.8.2.
[source]: Remove upstreamed patch.
[arguments]: Substitute INVOKE for SYSTEM*.  Use standard indentation.
* gnu/packages/patches/ninja-zero-mtime.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-19 13:19:33 +01:00
Mark H Weaver 846b8d7fa0
gnu: webkitgtk: Update to 2.18.5.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.5.
[source]: Remove patch.
* gnu/packages/patches/webkitgtk-mitigate-spectre.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18 07:24:15 -05:00
Tobias Geerinckx-Rice 4ff22ec3b1
gnu: slurm: Update to 17.11.2.
* gnu/packages/parallel.scm (slurm): Update to 17.11.2.
[source]: Replace patch with less fragile SUBSTITUTE* in a snippet.
[arguments]: Rename ‘autogen’ phase to ‘autoconf’.  Use INVOKE.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18 04:26:43 +01:00
Tobias Geerinckx-Rice b87bf3bbd4
gnu: lxterminal: Update to 0.3.1.
* gnu/packages/lxde.scm (lxterminal): Update to 0.3.1.
[source]: Remove patch for fixed CVE.
[arguments]: No longer skip test suite which appear to be fixed.
* gnu/packages/patches/lxterminal-CVE-2016-10369.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18 04:26:42 +01:00
Ludovic Courtès 6b26f9152c
gnu: clang-runtime: Fix build issues against glibc 2.26.
* gnu/packages/patches/clang-runtime-asan-build-fixes.patch,
gnu/packages/patches/clang-runtime-esan-build-fixes.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/llvm.scm (clang-runtime-from-llvm): Add 'patches'
parameter and honor it.
(clang-runtime): Pass patch list.
(clang-runtime-3.9.1, clang-runtime-3.7, clang-runtime-3.6)
(clang-runtime-3.5): Likewise.
2018-01-18 00:09:11 +01:00
Leo Famulari a4f393b71f
gnu: opencascade-oce: Fix build with glibc 2.26.
* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
2018-01-16 15:24:49 -08:00
Leo Famulari 8fa1872aba
gnu: libgnomeui: Fix build with Python 3.6.
* gnu/packages/patches/libgnomeui-utf8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (libgnomeui)[source]: Use it.
2018-01-16 14:02:09 -08:00
Leo Famulari 7c3f22e9c3
gnu: libxml2: Fix CVE-2017-15412.
* gnu/packages/patches/libxml2-CVE-2017-15412.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Use it.
2018-01-16 10:28:20 -08:00
Oleg Pykhalov b0912e9fdb
gnu: Add emacs-json-reformat.
* gnu/packages/patches/emacs-json-reformat-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
* gnu/packages/emacs.scm (emacs-json-reformat): New variable.
2018-01-15 14:42:55 +03:00
Ludovic Courtès 1b321229f4
gnu: icecat: Fix compilation against glibc 2.26.
* gnu/packages/patches/icecat-glibc-2.26.patch: New file.
* gnu/packages/gnuzilla.scm (icecat)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-01-13 23:22:40 +01:00
Ludovic Courtès 17c3eea760
gnu: libgnome: Adjust for latest GLib.
* gnu/packages/patches/libgnome-encoding.patch: New file.
* gnu/packages/gnome.scm (libgnome)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-01-13 00:09:23 +01:00
Leo Famulari 6b433caed2
gnu: transmission: Fix a DNS rebinding vulnerability that allows RCE.
* gnu/packages/patches/transmission-fix-dns-rebinding-vuln.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (transmission)[source]: Use it.
2018-01-12 10:11:47 -08:00
Tobias Geerinckx-Rice d95bb2957d
gnu: dtc: Update to 1.4.6.
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.6.
[source]: Remove both patches.
* gnu/packages/patches/dtc-format-modifier.patch: Delete file.
* gnu/packages/patches/dtc-32-bits-check.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove both.
2018-01-12 16:43:51 +01:00
Leo Famulari 4adb40bffc
Merge branch 'master' into core-updates 2018-01-11 14:22:50 -08:00
Leo Famulari 138c08899b
gnu: libvorbis: Fix CVE-2017-{14632,14633}.
* gnu/packages/patches/libvorbis-CVE-2017-14632.patch,
gnu/packages/patches/libvorbis-CVE-2017-14633.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xiph.scm (libvorbis)[replacement]: New field.
(libvorbis/fixed): New variable.
2018-01-11 14:13:17 -08:00
amirouche 4f85f7f7ef
gnu: guile-bytestructures: Update to 1.0.1.
* gnu/package/guile.scm (guile-bytestructures): Update to 1.0.1.
[source]: Use tarball from github instead of git.
[build-system]: Use GNU-BUILD-SYSTEM.
[arguments]: Remove.
[navitve-inputs]: Add PKG-CONFIG.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-11 14:07:30 +01:00
Tobias Geerinckx-Rice f26fa354f1
gnu: newsbeuter: Deprecate in favour of newsboat.
* gnu/packages/syndication.scm (newsbeuter): Redefine using
‘deprecated-package’.
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: Delete file.
* gnu/packages/patches/newsbeuter-CVE-2017-14500.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove both.
2018-01-11 03:16:00 +01:00
Leo Famulari fddb22ac19
gnu: gpm: Fix building with glibc 2.26.
* gnu/packages/patches/gpm-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (gpm)[source]: Use it.
2018-01-10 00:07:40 -08:00
Leo Famulari 606e246861
gnu: nfs-utils: Adapt to changes in glibc 2.26.
* gnu/packages/patches/nfs-utils-missing-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nfs.scm (nfs-utils)[source]: Use it.
2018-01-10 00:07:40 -08:00
Leo Famulari e522771221
gnu: libtirpc: Update to 1.0.2.
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.2.
[source]: Adjust patch list.
* gnu/packages/patches/libtirpc-CVE-2017-8779.patch: Delete file.
* gnu/packages/patches/libtirpc-missing-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-01-10 00:07:39 -08:00
Eric Bavier eb0e51c4c7
gnu: perl-module-pluggable: Fix perms on patch.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove executable
bit.
2018-01-09 13:44:52 -06:00
Eric Bavier 5424f9bcab
gnu: ledger: Fix test failures.
* gnu/packages/patches/ledger-revert-boost-python-fix.patch,
gnu/packages/patches/ledger-fix-uninitialized.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/finance.scm (ledger)[source]: Use them.
2018-01-08 16:03:55 -06:00
Mark H Weaver 56804398a9
gnu: webkitgtk: Disable SharedArrayBuffers to mitigate Spectre.
* gnu/packages/patches/webkitgtk-mitigate-spectre.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/webkit.scm (webkitgtk)[source]: Add patch.
2018-01-07 01:14:49 -05:00
Mark H Weaver c23243fccd
gnu: icecat: Add more fixes, including Spectre mitigation.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add more fixes from the
upstream mozilla-esr52 repository, plus a backported mitigation for
Spectre from Firefox 57.0.4.
* gnu/packages/patches/icecat-bug-1427870-spectre-mitigation.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-01-06 15:04:10 -05:00
Ludovic Courtès a4258dfa62
gnu: potrace: Relax unit tests.
* gnu/packages/patches/potrace-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (potrace)[source]: Use it.
2018-01-06 20:59:01 +01:00
Efraim Flashner 6149fdfb5e
gnu: gcc@6: Fix building with glibc@2.26.
* gnu/packages/gcc.scm (gcc@6)[source]: Add snippet to adjust
linux-unwind.h to changes in glibc@2.26.  Add patch.
* gnu/packages/patches/gcc-libsanitizer-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-01-05 16:37:09 +02:00
Eric Bavier 007c75f56f
gnu: ao-cad: Update and fix for aarch64.
* gnu/packages/patches/ao-cad-aarch64-support.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/engineering.scm (ao-cad)[source]: Use it.  Update snapshot to
fb288c9.  Use VCS helpers for version and file-name.
[arguments]: Add 'remove-native-compilation' phase.
2018-01-04 15:34:52 -06:00
Ludovic Courtès 8e7ec29df4
gnu: gcc@4.8: Fix libsanitizer cross-compilation.
This patch is modified from the original patch targeting gcc@5.

* gnu/packages/patches/gcc-asan-missing-include.patch: New file.
* gnu/packages/gcc.scm (gcc@4.8)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-01-03 23:06:44 +02:00
Leo Famulari 7a66b68730
gnu: fossil: Update to 2.4.
* gnu/packages/version-control.scm (fossil): Update to 2.4.
[source]: Remove patch.
* gnu/packages/patches/fossil-CVE-2017-17459.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-03 14:19:44 -05:00
Leo Famulari 4ed41f472b
Merge branch 'master' into core-updates 2018-01-03 14:18:01 -05:00
Leo Famulari 0c84e8679c
gnu: fossil: Fix CVE-2017-17459.
* gnu/packages/patches/fossil-CVE-2017-17459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (fossil)[source]: Use it.
2018-01-03 14:16:29 -05:00
Leo Famulari 7526338837
gnu: httpd: Update to 2.4.29.
* gnu/packages/web.scm (httpd): Update to 2.4.29.
[source]: Remove patch.
* gnu/packages/patches/httpd-CVE-2017-9798.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-03 00:34:03 -05:00
Marius Bakke 0f72f05238
gnu: docbook-xsl: Disable recursion in string substitution.
Fixes <https://bugs.gnu.org/29782>.
Reported by Gábor Boskovits.

* gnu/packages/patches/docbook-xsl-nonrecursive-string-subst.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/docbook.scm (docbook-xsl)[source](patches): Use it.
[native-inputs]: Add XZ.
[arguments]: Adjust PATH accordingly.
2018-01-02 17:01:07 +01:00
Marius Bakke 0c86790bfd
Revert "gnu: glibc: Fix CVE-2017-15670, CVE-2017-15671."
These issues has been classified as minor by Debian:

https://security-tracker.debian.org/tracker/CVE-2017-15670
https://security-tracker.debian.org/tracker/CVE-2017-15671

In addition, the patch only fixes one of the two CVEs it claims to fix.  We
don't backport most CVEs, especially non-critical ones, so no need to carry
this (which is in 2.26).  See discussion at <https://bugs.gnu.org/29490>.

This reverts commit 60e29339d8.
2018-01-02 16:55:17 +01:00
Leo Famulari 2a74f6f7e7
gnu: gimp: Fix CVE-2017-{17784,17785,17786,17787,17789}.
* gnu/packages/patches/gimp-CVE-2017-17784.patch,
gnu/packages/patches/gimp-CVE-2017-17785.patch,
gnu/packages/patches/gimp-CVE-2017-17786.patch,
gnu/packages/patches/gimp-CVE-2017-17787.patch,
gnu/packages/patches/gimp-CVE-2017-17789.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gimp.scm (gimp)[source]: Use them.
2017-12-31 13:51:20 -05:00
Efraim Flashner 23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates 2017-12-31 14:10:25 +02:00
Tobias Geerinckx-Rice c4556777d9
gnu: borg: Update to 1.1.4.
* gnu/packages/backup.scm (borg): Update to 1.1.4.
[source]: Remove obsolete patch.  Remove bundled lz4 and zstd.
[inputs]: Add zstd.
[arguments]: Build with input versions of lz4 and zstd.
* gnu/packages/patches/borg-fix-archive-corruption-bug.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-12-30 18:00:51 +01:00
Kei Kebreau 15b60fc313
gnu: python-pillow: Fix test failures on i686-linux and armhf-linux.
* gnu/packages/patches/python-pillow-fix-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow)[source]: Use it.
2017-12-27 11:51:15 -05:00
Mark H Weaver e8e860a559
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-12-26 22:53:02 -05:00
Jelle Licht 80f642acd4
gnu: node: Update to 9.3.0.
* gnu/packages/patches/node-test-http2-server-rst-stream.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/node.scm (node): Update to 9.3.0.
[source]: Remove 'node-test-http2-server-rst-stream.patch'.
[arguments]: Remove all tests that depend on eslint being available. Re-enable
fixed test.
2017-12-25 00:15:18 +01:00
Kei Kebreau 79bffa3ec8
gnu: chicken: Update to 4.13.0.
* gnu/packages/scheme.scm (chicken): Update to 4.13.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/chicken-CVE-2017-6949.patch,
gnu/packages/patches/chicken-CVE-2017-11343.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-12-23 09:18:43 -05:00
Kei Kebreau 9e3a8ed0eb
gnu: python-pillow: Update to 4.3.0.
* gnu/packages/python.scm (python-pillow): Update to 4.3.0.
[propagated-inputs]: Add python-olefile.
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-22 11:49:43 -05:00
Leo Famulari 9c3ad422d0
gnu: libgxps: Fix CVE-2017-11590.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (libgxps)[source]: Use it.
2017-12-21 14:17:35 -05:00
Leo Famulari f76fc96866
Merge branch 'master' into core-updates 2017-12-21 13:58:35 -05:00
Leo Famulari 0c9c9526bb
gnu: libxslt: Fix CVE-2017-5029 and re-apply the fix for CVE-2016-4738.
This is a followup to commit 2663c38826.

* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
* gnu/packages/patches/libxslt-CVE-2017-5029.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-12-21 12:28:47 -05:00
Leo Famulari 2a0e3d1635
gnu: libarchive: Fix CVE-2017-14502.
* gnu/packages/patches/libarchive-CVE-2017-14502.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (libarchive-3.3.2)[source]: Use it.
2017-12-21 12:28:43 -05:00
Leo Famulari ce16d312c6
gnu: libexif: Fix CVE-2017-7544.
* gnu/packages/patches/libexif-CVE-2017-7544.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (feh)[source]: Use it.
2017-12-21 03:24:55 -05:00
Efraim Flashner 417f3d494f
gnu: xboing: Fix CVE-2004-0149.
* gnu/packages/patches/xboing-CVE-2004-0149: New file.
* gnu/packages/games.scm (xboing)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-12-21 09:04:34 +02:00
Leo Famulari dab2542f84
gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369].
* gnu/packages/pdf.scm (mupdf): Update to 1.12.0.
[source]: Remove obsolete patches.
[inputs]: Add freeglut.
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch,
gnu/packages/patches/mupdf-CVE-2017-15587.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Update and
rename to...
* gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch: ... new file.
2017-12-21 02:00:59 -05:00
Leo Famulari dacd8cf2e8
gnu: links: Fix-CVE-2017-11114.
* gnu/packages/patches/links-CVE-2017-11114.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web-browsers.scm (links)[source]: Use it.
2017-12-20 20:08:35 -05:00
Ludovic Courtès 8d6cd08573
gnu: diffutils: Fix Gnulib/getopt cross-compilation issue.
Previously cross-compilation would fail:

     CC       xvasprintf.o
   xstrtol-error.c:50:16: warning: 'struct rpl_option' declared inside parameter list
		   int exit_status)
		   ^
   xstrtol-error.c: In function 'xstrtol_error':
   xstrtol-error.c:84:5: error: invalid use of undefined type 'struct rpl_option'

* gnu/packages/patches/diffutils-getopt.patch: New file.
* gnu/packages/base.scm (diffutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-12-20 23:19:31 +01:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Marius Bakke 937790df9d
gnu: qemu: Update to 2.10.2.
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.2.
[source](patches): Remove obsolete.
2017-12-19 01:15:09 +01:00
Efraim Flashner 91675d5082
gnu: rsync: Patch CVE-2017-{16548,17433,17434}.
* gnu/packages/rsync.scm (rsync)[source]: Add patches.
[properties]: Mark CVE-2017-15994 as not relevant.
* gnu/packages/patches/rsync-CVE-2017-16548.patch,
gnu/packages/patches/rsync-CVE-2017-17433.patch,
gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-12-18 22:53:46 +02:00
Leo Famulari e908a5af89
gnu: borg: Fix a data loss bug.
See <https://github.com/borgbackup/borg/issues/3444> for more information.

* gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
2017-12-16 16:33:32 -05:00
Efraim Flashner 67df7164e0
gnu: Add libvdpau-va-gl.
* gnu/packages/video.scm (libvdpau-va-gl): New variable.
* gnu/packages/patches/libvdpau-va-gl-unbundle.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-12-16 18:58:50 +02:00
Eric Bavier 1137d85b08
gnu: eigen: Update to 3.3.4.
* gnu/packages/patches/eigen-arm-neon-fixes.patch: New patch.
* gnu/packages/algebra.scm (eigen): Update to 3.3.4.
[source]: Use patch.  Disable svd-preallocation test for BDCSVD.
[arguments]: Set "EIGEN_SEED" environment variable in check phase.
* gnu/local.mk (dist_patch_DATA): Add patch.
2017-12-15 07:32:36 -06:00
Ben Woodcroft 8a6cd65a2a
gnu: python-scikit-learn: Patch test non-determinism.
* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
New file.
* gnu/packages/machine-learning.scm (python-scikit-learn)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-12-14 22:50:19 +10:00
Marius Bakke f7c03e452b
gnu: tcl, tk: Update to 8.6.7.
* gnu/packages/tcl.scm (tcl): Update to 8.6.7.
[source]: Remove obsolete patch.
(tk): Update to 8.6.7.
* gnu/packages/patches/tcl-mkindex-deterministic.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-12-13 07:26:42 +01:00
Marius Bakke 2b174b4ebd
gnu: fontconfig: Update to 2.12.6.
Gperf is now a hard dependency.

* gnu/packages/patches/fontconfig-remove-debug-printf.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (fontconfig): Update to 2.12.6.
[source]: Add 'fontconfig-remove-debug-printf.patch'.
[arguments]: Remove 'regenerate-fcobjshash' phase.
2017-12-12 17:59:36 +01:00
Eric Bavier aa5c206348
gnu: jemalloc: Fix tests for aarch64.
* gnu/packages/patches/jemalloc-arm-address-bits.patch: New patch.
* gnu/packages/jemalloc.scm (jemalloc)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-12-10 16:04:16 -06:00
Efraim Flashner 9c2d2c13ce
gnu: t1lib: Change how patched CVEs are listed.
* gnu/packages/fontutils.scm (t1lib)[source]: Change patch name.
[properties]: New field, register patched CVEs.
* gnu/packages/patches/CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch:
Rename to CVE-2011-1552+.patch.
* gnu/local.mk (dist_patch_DATA): Change patch name.
2017-12-10 21:59:08 +02:00
Marius Bakke 0f4ab4a59f
gnu: graphicsmagick: Update to 1.3.27.
* gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.27.
[source](patches): Remove.
2017-12-10 19:15:44 +01:00
Efraim Flashner 316fd29f9b
gnu: picprog: Fix non-Intel support.
* gnu/packages/patches/picprog-non-intel-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/embedded.scm (picprog)[source]: Add patch.
[arguments]: Skip building the 'testport' binary.
2017-12-10 12:38:48 +02:00
Gábor Boskovits 92b61d3e1b
gnu: gtk+-2: Fix failing test.
* gnu/packages/gtk.scm (gtk+-2)[source]: Add patch.
* gnu/packages/patches/gtk2-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-12-07 17:50:13 +01:00
Marius Bakke ff9edc2c82
gnu: valgrind: Fix test failure with glibc 2.26.
* gnu/packages/patches/valgrind-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/valgrind.scm (valgrind)[source](patches): Use it.
2017-12-07 17:41:51 +01:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Tobias Geerinckx-Rice 006a245087
gnu: libvirt: Update to 3.10.0.
* gnu/packages/virtualization.scm (libvirt): Update to 3.10.0.
[source]: Remove patches.
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-12-05 16:39:38 +01:00
Pierre Langlois d20b7384b7
gnu: Add clementine.
* gnu/packages/music.scm (clementine): New variable.
* gnu/packages/patches/clementine-use-openssl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-05 08:05:06 +01:00
Pierre Langlois 43925703e8
gnu: Add libmygpo-qt.
* gnu/packages/music.scm (libmygpo-qt): New variable.
* gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-05 08:05:06 +01:00
Andy Patterson b142756d9c
gnu: spice: Update to 0.14.0.
This is a follow-up to commit 9a187b39b7.

* gnu/packages/spice.scm (spice): Update to 0.14.0.
[source]: Remove obsolete patches. Use HTTPS URL.
[inputs]: Add orc.
[home-page]: Update to use https.
* gnu/packages/patches/spice-CVE-2016-9577.patch,
gnu/packages/patches/spice-CVE-2016-9578-1.patch,
gnu/packages/patches/spice-CVE-2016-9578-2.patch,
gnu/packages/patches/spice-CVE-2017-7506.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-12-04 14:05:23 -05:00
Leo Famulari 982caeab6f
gnu: bazaar: Fix CVE-2017-14176.
* gnu/packages/patches/bazaar-CVE-2017-14176.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (bazaar)[source]: Use it.
2017-12-04 13:13:11 -05:00
Ludovic Courtès 4bd70904c7
gnu: shepherd: Avoid "Bad file descriptor" warnings.
* gnu/packages/patches/shepherd-close-fds.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Use it.
2017-12-03 23:18:53 +01:00
Ricardo Wurmus b9fb70ca65
gnu: glusterfs: Replace hardcoded FHS references.
* gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/file-systems.scm (glusterfs)[source]: Use it.
2017-12-01 16:41:23 +01:00
Leo Famulari 2fc4709368
gnu: libtiff: Update to 4.0.9.
* gnu/packages/image.scm (libtiff): Update to 4.0.9.
[source]: Remove obsolete patches.
* gnu/packages/patches/libtiff-CVE-2016-10688.patch,
gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-tiffgetfield-bugs.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: Delete
files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-30 16:35:44 -05:00
Mathieu Othacehe c5b2905d92
gnu: dtc: Fix build on 32 bits platforms.
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and
  dtc-format-modifier.patch to fix build and tests on 32 bits platforms.
* gnu/packages/patches/dtc-32-bits-check.patch : New file.
* gnu/packages/patches/dtc-format-modifier.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add two above patches.
2017-11-30 13:32:28 +01:00
Tobias Geerinckx-Rice 3e9013562c
gnu: exim: Update to 4.89.1.
* gnu/packages/mail.scm (exim): Update to 4.89.1.
[source]: Remove patches for fixed CVEs (all of them).
* gnu/packages/patches/exim-CVE-2017-16943.patch: Delete file...
* gnu/packages/patches/exim-CVE-2017-16944.patch: ...as well as this file...
* gnu/packages/patches/exim-CVE-2017-1000369.patch: ...and this file.
* gnu/local.mk (dist_patch_DATA): Remove all of them.
2017-11-30 02:29:09 +01:00
Tobias Geerinckx-Rice 101e67ac20
gnu: vpnc: Use newer vpnc-scripts.
* gnu/packages/vpn.scm (vpnc)[source]: Remove patch.
[inputs]: Remove net-tools and iproute2.  Add vpnc-scripts.
[arguments]: Delete ‘configure’ and ‘wrap-vpnc-script’ #:phases.
Add ‘use-store-paths’ phase.
* gnu/packages/patches/vpnc-script.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29 16:08:36 +01:00
Marius Bakke 1ec0b7407f
gnu: libxfont@2: Update replacement to 2.0.3 [fixes CVE-2017-16611].
* gnu/packages/xorg.scm (libxfont2/fixed): Rename to ...
(libxfont2-2.0.3): ... this.  Make public.
[version]: New field.
[source]: Add URI and SHA256.  Remove patches.
(libxfont2)[replacement]: Change LIBXFONT2/FIXED to LIBXFONT2-2.0.3.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-29 12:53:08 +01:00
Marius Bakke 0e7fb0cd9b
gnu: optipng: Fix CVE-2017-1000229.
* gnu/packages/image.scm (optipng)[source](patches): New field.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-29 12:53:08 +01:00
Leo Famulari 3519f2841d
gnu: libtorrent-rasterbar: Update to 1.1.4.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.4.
[source]: Remove 'libtorrent-rasterbar-boost-compat.patch'.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29 01:12:18 -05:00
Leo Famulari 48adc61c14
gnu: exim: Fix CVE-2017-16944.
* gnu/packages/patches/exim-CVE-2017-16944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-28 18:22:49 -05:00
Leo Famulari 38faa2b546
gnu: qemu: Fix CVE-2017-{15118,15119}.
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-28 18:16:22 -05:00
Ludovic Courtès 1da3d2a3a1
gnu: perl-markdown-discount: Use a shorter patch file name.
* gnu/packages/patches/perl-text-markdown-discount-use-system-markdown.patch:
Rename to...
* gnu/packages/patches/perl-text-markdown-discount-unbundle.patch:
... this.
* gnu/packages/markup.scm (perl-text-markdown-discount): Adjust accordingly.
2017-11-28 14:57:16 +01:00
Marius Bakke 6198d34e0d
gnu: libxfont2: Update to 2.0.2.
* gnu/packages/xorg.scm (libxfont2): Update to 2.0.2.
[source](patches): Remove.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-28 14:24:08 +01:00
Marius Bakke 667082d591
gnu: ncurses: Update to 6.0-20170930.
* gnu/packages/ncurses.scm (ncurses): Update to 6.0-20170930.
[source](patches): Remove.
[source](uri): Adjust to version suffix.
[arguments]: Add 'apply-rollup-patch' phase.
[native-inputs]: Add a "rollup-patch" origin.
* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-28 14:24:08 +01:00
Mike Gerwitz 797d238789
gnu: node: Update to 8.9.1.
* gnu/packages/node.scm (node): Update to 8.9.1.
[source]: Apply 'node-test-http2-server-rst-stream.patch'.
[arguments]: Skip 'doc-only' target in 'check', which attempts to use
npm to retrieve 'js-yaml' package.  Remove test/doctool/test-make-doc.js.
Do not remove now-missing test case.  Remove new test case that fails in
containers due to networking.
* gnu/packages/patches/node-test-http2-server-rst-stream.patch: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:04:26 +01:00
Leo Famulari 5b327a2d61
gnu: exim: Fix CVE-2017-16943.
* gnu/packages/patches/exim-CVE-2017-16943.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-26 15:31:46 -05:00
Jan Nieuwenhuizen 68cb962a8d
gnu: guile-emacs: Resurrect, fixes #29186.
* gnu/packages/patches/guile-emacs-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (guile-emacs): Use it.  Add workaround for src/deps
dir creation.  Fixes #29186.
2017-11-25 20:05:26 +01:00
Leo Famulari ef56fdc18d
gnu: jbig2dec: Update to 0.14.
* gnu/packages/image.scm (jbi2dec): Update to 0.14.
[source]: Remove obsolete patches.
* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/jbig2dec-ignore-testtest.patch: Update for new release.
2017-11-25 10:23:38 -05:00
Oleg Pykhalov 7a45268935
gnu: Add emacs-highlight-stages.
* gnu/packages/emacs.scm (emacs-highlight-stages): New variable.
* gnu/packages/patches/emacs-highlight-stages-add-gexp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
2017-11-25 00:18:45 +03:00
Rutger Helling 17c3f77641
gnu: supertuxkart: Update to 0.9.3.
* gnu/packages/games.scm (supertuxkart): Update to 0.9.3.
[arguments] <#:configure-flags>: Pass -DBUILD_RECORDER=0.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 23:19:02 +01:00
Rutger Helling 5864f1c1ee
gnu: higan: Update to 106.
* gnu/packages/games.scm (higan): Update to 106.
* gnu/packages/patches/higan-remove-march-native-flag.patch: Adjust.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:59:49 +01:00
Brendan Tildesley 327620dc72
gnu: pcmanfm: Fix CVE-2017-8934.
* gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: New file.  This patch was
imported from Arch Linux.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lxde.scm (pcmanfm)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:55:58 +01:00
Leo Famulari c297e965d5
gnu: procmail: Fix CVE-2017-16844.
* gnu/packages/patches/procmail-CVE-2017-16844.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (procmail)[source]: Use it.
2017-11-21 21:54:39 -05:00
Marius Bakke aace9be80b
gnu: gcc@6: Respect SOURCE_DATE_EPOCH in __DATE__ and __TIME__ macros.
* gnu/packages/patches/gcc-6-source-date-epoch-1.patch,
gnu/packages/patches/gcc-6-source-date-epoch-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/gcc.scm (gcc-6)[source]: Use them.
2017-11-20 00:17:39 +01:00
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Efraim Flashner 6563d58c7e
gnu: owncloud-client: Don't check for updates.
* gnu/packages/sync.scm (owncloud-client)[source]: Add patch.
* gnu/packages/patches/owncloud-disable-updatecheck.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-18 21:50:08 +02:00
Ricardo Wurmus 3182a1d2f1
gnu: audacity: Update to 2.2.0.
* gnu/packages/patches/audacity-build-with-system-portaudio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (audacity): Update to 2.2.0.
[source]: Add patch to build with system portaudio; add snippet to remove most
bundled libraries.
[inputs]: Replace "gtk+-2" with "gtk+", replace "wxwidgets-gtk2" with
"wxwidgets"; remove "libsbsms"; add "suil" and "portmidi".
[arguments]: Adjust configure flags to avoid using bundled libraries; remove
phase "autoreconf"; add phases "fix-sbsms-check" and "use-upstream-headers".
2017-11-18 16:07:57 +01:00
Mark H Weaver f1e3214534
gnu: icecat: Add more fixes from upstream mozilla-esr52.
Add fixes for CVE-2017-7830, the remaining 1/2 changesets for CVE-2017-7828,
the remaining 1/19 changesets for CVE-2017-7826, and selected other fixes.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1415133.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-16 00:01:46 -05:00
Leo Famulari 882d921344
gnu: mupdf: Actually fix CVE-2017-15587.
The original fix could be removed by an optimizing compiler.

* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
2017-11-11 22:34:24 -05:00
Marius Bakke 45d5c80253
gnu: libvisio: Update to 0.1.6.
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:15:39 +01:00
Marius Bakke 7a9283a619
gnu: libetonyek: Update to 0.1.7.
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7.
[source](patches): Remove.
[arguments]<#:phases>: Remove.
[native-inputs]: Remove AUTOCONF and AUTOMAKE.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:13:01 +01:00
Leo Famulari adf7e69cab
gnu: qemu: Fix CVE-2017-{15038,15268,15289}.
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-10 12:16:31 -05:00
Efraim Flashner 0f1adf454d
gnu: acl: Fix test regression with perl-5.26.
* gnu/packages/acl.scm (acl)[source]: Add patch.
* gnu/packages/patches/acl-fix-perl-regex.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-09 19:49:06 +02:00
Jan Nieuwenhuizen 625492ee1a
gnu: gcc-4.7: Resurrect building with gcc-5.4.0.
* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
2017-11-07 22:03:51 +01:00
Gábor Boskovits 75d342ffa9
gnu: Add python-networkx2.
* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-07 21:17:20 +01:00
Dave Love fd23d259cd
gnu: Add PSM.
* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-07 18:09:13 +01:00
Eric Bavier acc2dab7f2
gnu: Disable gnulib's test-lock test in packages.
* gnu/packages/base.scm (findutils)[source]: Disable test-lock.
* gnu/packages/gettext.scm (gettext-minimal)[source]: Ditto.
* gnu/packages/libidn.scm (libidn)[source]: Ditto.
* gnu/packages/libunistring.scm (libunistring)[source]: Ditto.
* gnu/packages/augeas.scm (augeas)[source]: Ditto.
* gnu/packages/gsasl.scm (gsasl)[source]: Ditto.
* gnu/packages/patches/findutils-gnulib-multi-core.patch,
gnu/packages/patches/gettext-gnulib-multi-core.patch,
gnu/packages/patches/gettext-multi-core.patch,
gnu/packages/patches/libunistring-gnulib-multi-core.patch: Delete patches.
* gnu/local.mk (DIST_PATCH_DATA): Remove them.
2017-11-06 17:32:42 -06:00
Eric Bavier d8799bd0df
gnu: netsurf: Update to 3.7.
For compatibility, dependents must be updated at the same time.

* gnu/packages/web.scm (libcss): Update to 0.7.0
(nsgenbind): Update to 0.5.
(netsurf): Update to 3.7.
[arguments]: Fix binary name in .desktop.  Adjust "docs" directory name.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
2017-11-05 07:46:08 -06:00
Hartmut Goebel 6211aadf4b
gnu: kde-frameworks: Update to 5.39.0.
Beside simple updating:
- ktexteditor: Add input.
- kdelibs4support: Enable test kmimetypetest, disable test kuniqueapptest.
- kimageformats: Make the plugins available for tests.
- krunner: Make old tests pass again. Blacklist a failing new test.

* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, breeze-icons,
  extra-cmake-modules, kactivities, kactivities-stats, kapidox, karchive,
  kauth, kbookmarks, kcmutils, kcodecs, kcompletion, kconfig, kconfigwidgets,
  kcoreaddons, kcrash, kdbusaddons, kdeclarative, kded,
  kde-frameworkintegration, kdelibs4support, kdesignerplugin, kdesu,
  kdewebkit, kdnssd, kdoctools, kemoticons, kfilemetadata, kglobalaccel,
  kguiaddons, khtml, ki18n, kiconthemes, kidletime, kimageformats, kinit, kio,
  kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer,
  knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople,
  kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting,
  ktextwidgets, kunitconversion, kwallet, kwayland, kwidgetsaddons,
  kwindowsystem, kxmlgui, kxmlrpcclient, modemmanager-qt, networkmanager-qt,
  oxygen-icons, plasma-framework, prison, solid, sonnet, threadweaver): Update
  to 5.39.0
  (ktexteditor) Update to 5.39.0. [source]: Add patch. [inputs]: Add
  qtdeclarative.
  (kdelibs4support): Update to 5.39.0. [#:phase check-post-install]: Remove
  kmimetypetest from and add kuniqueapptest to list of test to be excluded
  when running ctest.
  (kimageformats): Update to 5.39.0. [#:phase check-setup] Make the plugins
  available for tests.
* gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-05 10:56:35 +01:00
Marius Bakke b4c22f2546
Merge branch 'master' into core-updates 2017-11-02 22:24:24 +01:00
Marius Bakke 550f4509ac
gnu: avahi: Update to 0.7.
* gnu/packages/avahi.scm (avahi): Update to 0.7.
* gnu/packages/patches/avahi-localstatedir.patch: Adjust context.
2017-11-02 21:18:38 +01:00
Julien Lepiller 8d6a48150a
gnu: Add java-powermock-reflect.
* gnu/packages/java.scm (java-powermock-reflect): New variable.
* gnu/packages/patches/java-powermock-fix-java-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-11-02 13:07:17 +01:00
Efraim Flashner 4e080fbb0b
gnu: icu4c: Update to 60.1.
* gnu/packages/icu4c.scm (icu4c): Update to 60.1.
[source]: Remove patches.
* gnu/packages/patches/icu4c-CVE-2017-14952.patch,
gnu/packages/patches/icu4c-CVE-2017-7867-CVE-2017-7868.patch,
icu4c-reset-keyword-list-iterator.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-02 09:08:02 +02:00
Efraim Flashner 19b7bba1b5
Merge remote-tracking branch 'origin/master' into core-updates 2017-11-01 10:29:59 +02:00
Marius Bakke 4119376d66
gnu: exiv2: Add upstream security fixes.
Fixes CVE-2017-14859, CVE-2017-14860, CVE-2017-14862 and CVE-2017-14864.

* gnu/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch,
gnu/packages/patches/exiv2-CVE-2017-14860.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/image.scm (exiv2)[source]: Use them.
2017-10-27 00:50:09 +02:00
Marius Bakke 6b88912eb6
gnu: wget: Update to 1.19.2 [fixes CVE-2017-13089 and CVE-2017-13090].
* gnu/packages/wget.scm (wget): Update to 1.19.2.
[source](uri): Change to '.lz' tarball.
[source](patches): Remove.
[native-inputs]: Add LZIP.
* gnu/packages/patches/wget-CVE-2017-6508.patch,
gnu/packages/patches/wget-fix-504-test-timeout.patch,
gnu/packages/patches/wget-perl-5.26.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-10-26 23:45:17 +02:00
Efraim Flashner eda8a841ac
Merge remote-tracking branch 'origin/python-updates' into core-updates 2017-10-26 12:45:11 +03:00
Tobias Geerinckx-Rice b7883b111d
Merge branch 'master' into core-updates 2017-10-25 20:02:08 +02:00
Pierre Langlois de98f4ed55
gnu: Add crypto++.
* gnu/packages/crypto.scm (crypto++): New variable.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 14:54:13 +02:00
Marius Bakke ca4fd41de8
Merge branch 'master' into core-updates 2017-10-24 22:00:23 +02:00
Leo Famulari ae7e24c421
gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2017-10-24 13:44:34 -04:00
Leo Famulari 6dcc8239be
gnu: icu4c: Fix CVE-2017-14952.
* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c-fixed): New variable.
2017-10-24 13:10:35 -04:00
Marius Bakke 60e29339d8
gnu: glibc: Fix CVE-2017-15670, CVE-2017-15671.
* gnu/packages/patches/glibc-CVE-2017-15670-15671.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc/fixed): New variable.
(glibc-2.24, glibc-2.23, glibc-2.22)[source](patches): Add
'glibc-CVE-2017-15670-15671.patch'.
2017-10-22 23:13:09 +02:00
Marius Bakke 3f9204c916
gnu: ghostscript: Remove graft for 9.22.
* gnu/packages/patches/ghostscript-CVE-2017-8291.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.22.
[replacement]: Remove field.
[source](patches): Remove 'ghostscript-CVE-2017-8291.patch'.
(ghostscript-9.22): Remove variable.
2017-10-22 20:15:25 +02:00
Marius Bakke 119a749db9
Merge branch 'master' into core-updates 2017-10-22 20:12:52 +02:00
Leo Famulari 7827032a7c
gnu: libvirt: Fix CVE-2017-1000256.
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (libvirt)[source]: Use it.
2017-10-20 15:36:43 -04:00
Leo Famulari 9ccce79910
gnu: musl: Update to 1.1.17.
* gnu/packages/musl.scm (musl): Update to 1.1.17.
[source]: Remove patch.
* gnu/packages/patches/musl-CVE-2016-8859.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-19 17:37:25 -04:00
Efraim Flashner 01c7193e0b
gnu: automake: Update to 1.15.1.
* gnu/packages/autotools.scm (automake): Update to 1.15.1.
[source]: Remove patches.
(automake/latest): Remove package.
* gnu/packages/patches/automake-regexp-syntax.patch,
gnu/packages/patches/automake-test-gzip-warning.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-10-19 09:04:42 +03:00
Marius Bakke 7439173f2c
gnu: python-unittest2: Update to 1.1.0.
* gnu/packages/python.scm (python-unittest2): Update to 1.1.0.
[source]: Use PYPI-URI. Add two patches.
[arguments]: Add phase to run tests.
[propagated-inputs]: Add PYTHON-SIX and PYTHON-TRACEBACK2.
(python2-unittest2): Use 'package-with-python2'.
* gnu/packages/patches/python2-unittest2-remove-argparse.patch: Rename to ...
* gnu/packages/patches/python2-unittest2-remove-argparse.patch: ... this.
* gnu/packages/patches/python-unittest2-python3-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2017-10-19 00:16:52 +02:00
Marius Bakke b18226c3a1
gnu: python@3: Update to 3.6.3.
* gnu/packages/patches/python-3.5-fix-tests.patch: Rename to ...
* gnu/packages/patches/python-3-fix-tests.patch: ... this. Adjust and disable
more tests.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-2.7)[argument]: Patch '/bin/sh' in one more file.
(python-3.5): Rename to ...
(python-3.6): ... this. Update to 3.6.3.
[source](patches): Remove obsolete patch, adjust to patch rename.
(python-3): Use PYTHON-3.6.
2017-10-19 00:16:49 +02:00
Marius Bakke 603a64920f
gnu: python@2: Update to 2.7.14.
* gnu/packages/python.scm (python-2.7): Update to 2.7.14.
[source]: Add patch to skip two new tests.  Delete upstreamed patch.
* gnu/packages/patches/python-2.7-adjust-tests.patch: New file.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2017-10-19 00:16:49 +02:00
Marius Bakke 07dfc89859
gnu: mupdf: Fix CVE-2017-15587.
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf)[source](patches): Use it.
2017-10-18 22:15:09 +02:00
Ricardo Wurmus d991b05664
gnu: Add Axoloti.
* gnu/packages/axoloti.scm: New file.
* gnu/packages/patches/libusb-for-axoloti.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
(GNU_SYSTEM_MODULES): Add module.
2017-10-17 16:49:20 +02:00
Leo Famulari 09748a3527
gnu: wpa-supplicant: Fix "KRACK" key reinstallation attacks [security fixes].
Fixes CVE-2017-{13078,13079,13080,13081,13082,13087,13088}.

See these announcements for more information:
https://w1.fi/security/2017-1/wpa-packet-number-reuse-with-replayed-messages.txt
https://www.krackattacks.com/

* gnu/packages/patches/wpa-supplicant-CVE-2017-13082.patch,
gnu/packages/patches/wpa-supplicant-fix-key-reuse.patch,
gnu/packages/patches/wpa-supplicant-fix-nonce-reuse.patch
gnu/packages/patches/wpa-supplicant-fix-zeroed-keys.patch,
gnu/packages/patches/wpa-supplicant-krack-followups.patch: New files.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Use them.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-10-16 14:17:27 -04:00
Thomas Danckaert 8cff2e7aed
Merge 'master' into core-updates 2017-10-16 19:52:30 +02:00
Efraim Flashner 404e3d8b1b
gnu: gcc@5: Update to 5.5.0.
* gnu/packages/gcc.scm (gcc@5): Update to 5.5.0.
[source]: Switch to '.tar.xz' tarball. Remove patch.
* gnu/packages/patches/gcc-asan-powerpc-missing-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-13 17:13:22 +03:00
Marius Bakke c60ecc35da
gnu: glib: Update to 2.54.1.
See <https://bugzilla.gnome.org/show_bug.cgi?id=776504> for the license change.

* gnu/packages/patches/glib-respect-datadir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/glib.scm (glib): Update to 2.54.1.
[source](patches): Add 'glib-respect-datadir.patch'.
[arguments]<#:phases>: Re-enable timezone test.
[license]: Change to LGPL2.1+.
2017-10-12 20:40:55 +02:00
Ludovic Courtès 7ad81b8b67
gnu: totem: Update to 3.26.0.
* gnu/packages/gnome.scm (totem): Update to 3.26.0.
[source]: Add 'patches' field.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[native-inputs]: Add GTK+:bin and GLIB:bin.
[arguments]: Pass #:glib-or-gtk?.  Adjust #:configure-flags to new
syntax.
* gnu/packages/patches/totem-meson-easy-codec.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-10-11 23:00:46 +02:00
Marius Bakke c09629520b
gnu: libxml2: Update to 2.9.6.
While at it, remove leftover patches since libxml2/fixed went missing
without conflict in c01ef97594.

* gnu/packages/patches/libxml2-CVE-2017-0663.patch,
gnu/packages/patches/libxml2-CVE-2017-7375.patch,
gnu/packages/patches/libxml2-CVE-2017-7376.patch,
gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch,
gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch:  Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2): Update to 2.9.6.
2017-10-10 22:36:42 +02:00
Marius Bakke c01ef97594
Merge branch 'master' into core-updates 2017-10-10 22:33:28 +02:00
Marius Bakke 1c055d7258
Merge branch 'staging' 2017-10-10 21:44:32 +02:00
Marius Bakke 97ecd75e28
gnu: libxfont: Fix CVE-2017-13720, CVE-2017-13722.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
  gnu/packages/patches/libxfont-CVE-2017-13722.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/xorg.scm (libxfont, libxfont2)[source]: Use them.
2017-10-10 19:34:02 +02:00
Marius Bakke c334058f6e
gnu: libmwaw: Update to 0.3.12.
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.12.
[source](patches): Remove.
[arguments]: Remove.
* gnu/packages/patches/libmwaw-CVE-2017-9433.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-10 18:38:01 +02:00
Marius Bakke 5124e63775
gnu: libvisio: Update to 0.1.5.
* gnu/packages/patches/libvisio-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.5.
[source]: Add 'libvisio-fix-tests.patch'.
[arguments]: Remove.
2017-10-10 18:38:00 +02:00
Cyril Roelandt 4792a0321a
gnu: python2-unittest2: Update to 1.1.0.
* gnu/packages/python.scm (python2-unittest2): Update to 1.1.0.
* gnu/packages/patches/python2-unittest2-remove-argparse.patch: New file.
* gnu/local.mk: Add it.
2017-10-10 02:36:35 +02:00
Marius Bakke ad3a937dae
Merge branch 'master' into staging 2017-10-07 12:54:40 +02:00
Christopher Baines 6bbbca9073
gnu: Add mongodb.
* gnu/packages/databases.scm (mongodb): New variable.
2017-10-06 21:24:23 +01:00
Marius Bakke 6a317919cf
Merge branch 'master' into staging 2017-10-06 11:03:27 +02:00
Marius Bakke 3f697ff2e8
gnu: openjpeg: Update to 2.3.0.
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch,
gnu/packages/patches/openjpeg-CVE-2017-14040.patch,
gnu/packages/patches/openjpeg-CVE-2017-14041.patch,
gnu/packages/patches/openjpeg-CVE-2017-14151.patch,
gnu/packages/patches/openjpeg-CVE-2017-14152.patch,
gnu/packages/patches/openjpeg-CVE-2017-14164.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.3.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Adjust openjpeg
substitution.
2017-10-05 20:28:32 +02:00
Maxim Cournoyer 19d2713196
gnu: gcc: Fix manual pages.
Fixes bug #24069. perl is made a native input to all of the gcc-* packages
except for gcc-boot0; perl-boot0 is made a native input to gcc-final.

* gnu/packages/patches/gcc-fix-texi2pod.patch: Add patch file to fix texi2pod.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gcc.scm (gcc-4.7, gcc-4.8, gcc-4.9, gcc-5): Use it.
(gcc-4.7)[native-inputs]: Add perl.
(gcc-4.9)[native-inputs]: Likewise.
* gnu/packages/commencement.scm (gcc-boot0)[native-inputs]: Remove perl.
(gcc-final)[native-inputs]: Add perl-boot0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-10-05 21:15:21 +03:00
Kei Kebreau 46cf31868c
gnu: curl: Update replacement to 7.56.0 [security fixes].
Fixes CVE-2017-1000254.
See <https://curl.haxx.se/docs/adv_20171004.html> for details.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.56.0.
(curl-7.55.0): Rename to ...
(curl-7.56.0): ... this.
[arguments]: Remove 'fix-Makefile' phase.
[source]: Remove patch.
* gnu/packages/patches/curl-bounds-check.patch: Delete it.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-04 19:37:55 -04:00
Marius Bakke 7716ccd59c
Merge branch 'master' into staging 2017-10-05 00:45:38 +02:00
Marius Bakke a35532f52d
gnu: xorg-server: Update to 1.19.4 [fixes CVE-2017-13721, CVE-2017-13723].
The GPG signature for the bz2 tarball is bad, but the checksum matches the
signed release announcement, and contents are identical to the good .gz.

* gnu/packages/xorg.scm (xorg-server): Update to 1.19.4.
[source]: Remove obsolete patches.
* gnu/packages/patches/xorg-server-CVE-2017-10971.patch,
gnu/packages/patches/xorg-server-CVE-2017-10972.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2017-10-05 00:42:56 +02:00
Efraim Flashner f473b8f1f7
gnu: clisp: Update to 2.49-60.
* gnu/packages/lisp.scm (clisp): Update to 2.49-60.
[source]: Download mercurial repository, apply patch.
[inputs]: Replace readline@6.2 with readline, add ncurses.
[arguments]: Add multiple configure flags. Remove build phase to build
in "src" directory. Remove more uses of a timestamp.
2017-10-04 09:29:24 +03:00
Marius Bakke f9bd2051f0
gnu: qemu: Update to 2.10.1.
* gnu/packages/patches/qemu-CVE-2017-13711.patch,
  gnu/packages/patches/qemu-CVE-2017-14167.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.1.
[source](patches): Remove.
2017-10-03 23:22:54 +02:00
Cyril Roelandt 2299f5cd78
gnu: python-nose-timer: Add missing patch.
* gnu/packages/patches/python-nose-timer-drop-ordereddict.patch: New file.
* gnu/local.mk: Add it.
2017-10-03 22:41:25 +02:00
Kei Kebreau 4d6801b735
gnu: graphicsmagick: Fix CVE-2017-14649.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-10-03 11:56:24 -04:00
Dave Love a66408f8c0
gnu: Add cube.
* gnu/packages/profiling.scm(cube): New variable.
* gnu/packages/patches/cube-nocheck.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:55 +02:00
Efraim Flashner d31e7bad8c
Revert "gnu: binutils: Update to 2.29.1."
This reverts commit 3097edf549.
2017-10-03 08:55:48 +03:00
Efraim Flashner 3097edf549
gnu: binutils: Update to 2.29.1.
* gnu/packages/base.scm (binutils): Update to 2.29.1.
[source]: Add patch.
* gnu/packages/patches/binutils-CVE-2017-14729.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-10-02 12:13:39 +03:00
Efraim Flashner 0b7f9806db
gnu: pcre: Update to 8.41.
* gnu/packages/pcre.scm (pcre): Update to 8.41.
[replacement]: Remove field.
[source]: Remove patch.
(pcre-8.41): Remove variable.
* gnu/patches/pcre-CVE-2017-7186.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-01 22:16:41 +03:00
Efraim Flashner 60bf81541c
gnu: gdk-pixbuf: Update to 2.36.10.
* gnu/packages/gtk.scm (gdk-pixbuf, gdk-pixbuf+svg): Update to 2.36.10.
[replacement]: Remove field.
[source]: Remove patch.
(gdk-pixbuf-2.36.10, gdk-pixbuf+svg-2.36.10): Remove variables.
* gnu/packages/patches/gdk-pixbuf-list-dir.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-01 22:16:38 +03:00
Efraim Flashner 32906b0933
gnu: gd: Update to 2.2.5.
* gnu/packages/gd.scm (gd): Update to 2.2.5.
[replacement]: Remove field.
[sources]: Remove two patches.
(gd-2.2.5): Remove variable.
* gnu/packages/patches/gd-fix-gd2-read-test.patch,
gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-10-01 22:16:34 +03:00
Efraim Flashner 64df08f0cf
Merge remote-tracking branch 'origin/master' into core-updates 2017-10-01 22:16:22 +03:00
Theodoros Foradis ea1aa4525e
gnu: openocd: Update to 0.10.0
* gnu/packages/embedded.scm (openocd): Update to 0.10.0.
[arguments] <configure-flags>: Add "--enable-sysfsgpio" flag.
Remove "--enable-oocd_trace" flag.
[arguments] <phases>: Add phase "change-udev-group".
Add phase "install-udev-rules".
* gnu/packages/patches/openocd-nrf52.patch: Modify to apply on 0.10.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-28 15:00:02 +02:00
Julien Lepiller 8a238180fd
gnu: Add ocaml-graph.
* gnu/packages/ocaml.scm (ocaml-graph): New variable.
* gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-27 21:26:16 +02:00
Marius Bakke 9f1d112d12
Merge branch 'master' into staging 2017-09-27 21:14:27 +02:00
Marius Bakke 29591fc4c4
gnu: e2fsprogs: Update to 1.43.6.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.6.
2017-09-27 21:02:56 +02:00
Leo Famulari 373cda6ac6
gnu: libunwind: Update to 1.2.1.
* gnu/packages/libunwind.scm (libunwind): Upate to 1.2.1.
[source]: Remove 'libunwind-CVE-2015-3239.patch'.
* gnu/packages/patches/libunwind-CVE-2015-3239.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-26 11:42:06 -04:00
Leo Famulari 66660960ba
gnu: certbot, python-acme: Update to 0.18.2.
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.18.2.
* gnu/packages/patches/python-acme-dont-use-openssl-rand.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-25 03:27:24 -04:00
Efraim Flashner c80f837afd
gnu: fontforge: Update to 20170731.
* gnu/packages/fontutils.scm (fontforge): Update to 20170731.
[source]: Remove patch, remove snippet.
[arguments]: Enable tests. Remove phase to build showttf.
[inputs]: Use python-wrapper instead of python.
[home-page]: Update to new home page.
* gnu/packages/patches/fontforge-svg-modtime.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-24 20:22:00 +03:00
Marius Bakke e0afc09de4
gnu: curl: Update to 7.55.1.
* gnu/packages/patches/curl-bounds-check.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/curl.scm (curl): Update to 7.55.1.
[replacement]: Remove field.
[source]: Use '.xz' tarball.
(curl-7.55.0): Remove variable.
2017-09-21 20:53:15 +02:00
Marius Bakke efa0ba499e
Merge branch 'master' into staging 2017-09-21 20:34:49 +02:00
Ricardo Wurmus 0cdb6ab499
gnu: emacs: Update to 25.3.
* gnu/packages/patches/emacs-unsafe-enriched-mode-translations.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/emacs.scm (emacs): Update to 25.3.
[source]: Remove obsolete patch.
2017-09-21 16:46:20 +02:00
Marius Bakke a9bd50e352
gnu: bluez: Remove leftover patch.
This is a follow-up to commit 164fccea7e.

* gnu/packages/patches/bluez-CVE-2017-1000250.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-20 20:50:00 +02:00
Marius Bakke cb6392698a
gnu: mesa: Update to 17.2.1.
* gnu/packages/gl.scm (mesa): Update to 17.2.1.
[inputs]: Add WAYLAND-PROTOCOLS.
* gnu/packages/patches/mesa-skip-disk-cache-test.patch: Adjust context.
2017-09-20 19:55:34 +02:00
Marius Bakke b093be236e
gnu: gd: Remove graft for 2.2.5.
* gnu/packages/gd.scm (gd): Update to 2.2.5.
[source]: Remove obsolete patches.
[replacement]: Remove field.
(gd-2.2.5): Remove variable.
* gnu/packages/patches/gd-fix-gd2-read-test.patch,
gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove patches.
* gnu/packages/php.scm (php)[inputs]: Replace GD-2.2.5 with GD.
2017-09-20 19:06:38 +02:00
Marius Bakke 58366883f2
Merge branch 'master' into staging 2017-09-20 18:49:26 +02:00
Efraim Flashner bbcfd80a20
gnu: newsbeuter: Fix CVE-2017-14500.
* gnu/packages/syndication.scm (newsbeuter)[source]: Add patch.
* gnu/packages/patches/newsbeuter-CVE-2017-14500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-18 22:38:56 +03:00
Ludovic Courtès e14ab0ad07
gnu: httpd: Patch "options bleed" [fixes CVE-2017-9798].
* gnu/packages/patches/httpd-CVE-2017-9798.patch: New file.
* gnu/packages/web.scm (httpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-18 15:44:52 +02:00
Marius Bakke 881006b65c
gnu: certbot: Fix build with python-pyopenssl >= 17.3.0.
* gnu/packages/patches/python-acme-dont-use-openssl-rand.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/tls.scm (python-acme)[source]: Use it.
2017-09-17 18:50:00 +02:00
Ben Woodcroft 86805c1ba3
gnu: ruby-2.2: Update to 2.2.8. Fix CVE-2017-{0898,10784,14033,14064}.
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.8.
[source]: Remove patch.
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-17 20:08:48 +10:00
Ben Woodcroft c351e8cea5
gnu: ruby-2.3: Update to 2.3.5. Fix CVE-2017-{0898,10784,14033,14064}.
* gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.5.
[source]: Remove patch.
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-17 20:08:48 +10:00
Ben Woodcroft 312e8a9993
ruby: Update replacement to 2.4.2. Fix CVE-2017-{0898,10784,14033,14064}.
* gnu/packages/ruby.scm (ruby): Update replacement to 2.4.2.
(ruby-2.4.1): Rename to ...
(ruby-2.4.2): ... this.
[source]: Remove patches.
* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-09-17 20:08:48 +10:00
Peter Mikkelsen dab666cd8d
gnu: Add meson-for-build.
* gnu/packages/build-tools.scm (meson-for-build): New variable.
* gnu/packages/patches/meson-for-build-rpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-16 00:03:53 +02:00
Paul Garlick 8f21aa22bf
gnu: Add openfoam.
*gnu/packages/patches/openfoam-4.1-cleanup.patch: New file
*gnu/packages/simulation.scm: New file
*gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-15 18:31:53 +02:00
Kei Kebreau db7f7eb8ca
gnu: graphicsmagick: Fix CVE-2017-{11403,14103}.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-11403+CVE-2017-14103.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-14 09:23:19 -04:00
Christopher Baines 9d46919f9c
gnu: Add perl-text-markdown-discount.
* gnu/packages/markdown.scm (perl-text-markdown-discount): New variable.
* gnu/packages/patches/perl-text-markdown-discount-use-system-markdown.patch:
  New file.
2017-09-13 18:19:29 +01:00
Mark H Weaver 27236a4348
gnu: bluez: Add replacement to fix CVE-2017-1000250.
* gnu/packages/patches/bluez-CVE-2017-1000250.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (bluez)[replacement]: New field.
(bluez/fixed): New variable.
2017-09-13 10:43:03 -04:00
Ludovic Courtès 66ae958c5b
gnu: emacs: Patch message-mode enriched text translation [security fix].
* gnu/packages/patches/emacs-unsafe-enriched-mode-translations.patch:
New file.
* gnu/packages/emacs.scm (emacs)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-11 14:52:29 +02:00
Efraim Flashner 338b58e0ea
gnu: openjpeg: Fix CVE-2017-14164.
* gnu/packages/image.scm (openjpeg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-14164.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-10 22:00:35 +03:00
Efraim Flashner 224bb4b6f9
gnu: graphicsmagick: Fix CVE-2017-14165.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-10 21:45:45 +03:00
Kei Kebreau 2cc752c0b0
gnu: graphicsmagick: Fix CVE-2017-14042.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-10 09:33:56 -04:00
Ludovic Courtès 67a37c6311
gnu: foomatic-filters: Add missing patches.
This is a followup to commit d02aabaf1b.

* gnu/packages/patches/foomatic-filters-CVE-2015-8327.patch: New file.
* gnu/packages/patches/foomatic-filters-CVE-2015-8560.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-09-10 12:00:25 +02:00
Efraim Flashner 9526fbef4d
gnu: libxslt: Update to 1.1.30.
* gnu/packages/xml.scm (libxslt): Update to 1.1.30.
[sources]: Remove one patch.
* gnu/packages/patches/libxslt-CVE-2016-47738.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-10 12:24:53 +03:00
Efraim Flashner 0f763641b8
gnu: libxml2: Update to 2.9.5.
* gnu/packages/xml.scm (libxml2): Update to 2.9.5.
[sources]: Remove patches.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch,
gnu/packages/patches/libxml2-CVE-2016-5131.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-09-10 12:24:51 +03:00
Leo Famulari 81635ad03e
gnu: tcpdump: Update to 4.9.2 [security fixes].
Fixes CVE-2017-{12893,12894,12895,12896,12897,12898,12899,12900,12901,12902,
12985,12986,12987,12988,12989,12990,12991,12992,12993,12994,12995,12996,12997,
12998,12999,13000,13001,13002,13003,13004,13005,13006,13007,13008,13009,13010,
13012,13013,13014,13015,13016,13017,13018,13019,13020,13021,13022,13023,13024,
13025,13026,13027,13028,13029,13030,13031,13032,13033,13034,13035,13036,13037,
13038,13039,13040,13041,13042,13043,13044,13045,13046,13047,13048,13049,13050,
13051,13052,13053,13054,13055,13687,13688,13689,13690,13725}.

* gnu/packages/admin.scm (tcpdump): Update to 4.9.2.
[source]: Remove patches and add alternate source URL.
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch,
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-09-07 17:44:20 -04:00
Leo Famulari 6a7bd25bf2
gnu: qemu: Fix CVE-2017-{13711,14167}.
* gnu/packages/patches/qemu-CVE-2017-14167.patch
gnu/packages/patches/qemu-CVE-2017-13711.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-09-07 15:46:57 -04:00
Leo Famulari 94d671f673
gnu: libarchive: Replace with libarchive 3.3.2 and fix CVE-2017-14166.
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive-3.3.2): New variable.
* gnu/packages/patches/libarchive-CVE-2017-14166.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-09-07 14:29:38 -04:00
Efraim Flashner 98df3a88b5
gnu: libzip: Update to 1.3.0 (fixes CVE-2017-14107).
* gnu/packages/compression.scm (libzip): Update to 1.3.0.
[source]: Remove patch.
[arguments]: Remove custom 'patch-perl phase.
* gnu/packages/patches/libzip-CVE-2017-12858.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-06 14:20:43 +03:00
Efraim Flashner 3b7c606965
gnu: openjpeg: Fix CVE-2017-14151, CVE-2017-14152.
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14151.patch,
gnu/packages/patches/openjpeg-CVE-2017-14152.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-06 14:20:40 +03:00
Nicolas Goaziou f049e79dc3
gnu: csound: Update to 6.09.1.
* gnu/packages/audio.scm (csound): Update to 6.09.1.  Change source URI.
* gnu/packages/patches/csound-header-ordering.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove reference to patch above.
2017-09-06 12:51:59 +02:00
Roel Janssen 026ebc141f
gnu: Update calibre to 3.6.0.
* gnu/local.mk: Remove calibre-drop-unrar.patch
* gnu/packages/ebook.scm (calibre): Update to 3.6.0.
  Add python-html5-parser input.
* gnu/packages/patches/calibre-drop-unrar.patch: Remove file.
2017-09-06 12:42:57 +02:00
Efraim Flashner f1597427f2
gnu: file: Fix CVE-2017-1000249.
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use package/inherit.
* gnu/packages/patches/file-CVE-2017-1000249.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-09-05 23:04:05 +03:00
Leo Famulari 514c2f4806
gnu: tcpdump: Fix CVE-2017-[11541,11542,11543].
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (tcpdump)[source]: Use them.
2017-09-05 14:53:50 -04:00
Ludovic Courtès 9f993702a6
gnu: coreutils: Update to 8.28.
* gnu/packages/base.scm (coreutils): Update to 8.28.
[source]: Remove 'patches'.
* gnu/packages/patches/coreutils-cut-huge-range-test.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2017-09-05 10:18:39 +02:00
Marius Bakke a76585e553
Merge branch 'master' into staging 2017-09-04 22:34:28 +02:00
Jelle Licht 448339709d
gnu: node: Update to 8.4.0.
* gnu/packages/patches/node-9077.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/node.scm (node): Update to 8.4.0.
(node)[arguments]: Removed broken linter test. Removed dns test.
2017-09-02 22:59:18 +02:00
Marius Bakke aa3542e844
gnu: gdk-pixbuf: Update to 2.36.9.
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.9.
[source]: Remove obsolete patch.
* gnu/packages/patches/gdk-pixbuf-list-dir.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-09-02 16:51:10 +02:00
Kei Kebreau d536113df0
gnu: openjpeg: Fix CVE-2017-{14040,14041}.
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14040.patch,
gnu/packages/patches/openjpeg-CVE-2017-14041.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-02 10:21:03 -04:00
Ben Woodcroft 25bd1fc1c1
gnu: metabat: Update to 2.12.1.
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it.  Use url-fetch.
2017-09-01 14:45:57 +08:00
Arun Isaac a0596a2f27
gnu: python2-larch: Enable tests.
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python2-larch)[source]: Use it.
[arguments]: Move 'check' phase to before 'build' phase.
2017-09-01 11:14:16 +05:30
Efraim Flashner 0ff44ba464
gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches.
* gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-09-01 00:02:27 +03:00
Alex Vong 76fed2b3c4
gnu: libxml2: Fix CVE-2017-{0663,7375,7376,9047,9048,9049,9050}.
* gnu/packages/patches/libxml2-CVE-2017-0663.patch,
gnu/packages/patches/libxml2-CVE-2017-7375.patch,
gnu/packages/patches/libxml2-CVE-2017-7376.patch,
gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch,
gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-31 21:45:36 +02:00
Ben Woodcroft c959e5a1dc
gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.2.7)[source]: Use it.
2017-08-31 10:43:19 +08:00
Ben Woodcroft db542518b3
gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.3.4)[source]: Use it.
2017-08-31 10:43:19 +08:00
Ben Woodcroft 9770cbf9e2
gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ruby.scm (ruby-2.4.1)[source]: Use them.
2017-08-31 10:43:19 +08:00
Ben Woodcroft 690a904ad7
gnu: metabat: Update to 2.11.3.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.3.
[source]: Use git-fetch.  Remove boost-related patch.
* gnu/packages/patches/metabat-fix-boost-issue.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-31 10:43:18 +08:00
Marius Bakke 4f68156140
gnu: gd: Replace with 2.2.5.
Fixes CVE-2017-6362 and CVE-2017-7890.

* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.5): New variable.
* gnu/packages/php.scm (gd-for-php): Remove variable
(php)[inputs]: Replace GD-FOR-PHP with GD-2.2.5.
* gnu/packages/patches/gd-CVE-2017-7890.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-31 02:49:43 +02:00
Marius Bakke 2de7d137b3
gnu: qemu: Update to 2.10.0.
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11334.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch,
gnu/packages/patches/qemu-CVE-2017-12809.patch:
gnu/packages/patches/qemu-CVE-2017-7493.patch,
gnu/packages/patches/qemu-CVE-2017-8112.patch,
gnu/packages/patches/qemu-CVE-2017-8309.patch,
gnu/packages/patches/qemu-CVE-2017-8379.patch,
gnu/packages/patches/qemu-CVE-2017-8380.patch,
gnu/packages/patches/qemu-CVE-2017-9524.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.0.
[source](patches): Remove.
2017-08-30 20:50:13 +02:00
Ricardo Wurmus 799247d2d9
gnu: multiqc: Update to 1.2.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2.
[source]: Remove patches.
[arguments]: Remove to enable tests.
[propagated-inputs]: Add python-spectra, python-requests, python-markdown,
python-lzstring.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-30 17:32:00 +02:00
Efraim Flashner 63adf0fd67
gnu: grep: Update to 3.1.
* gnu/packages/base.scm (grep): Update to 3.1.
[source]: Remove patch.
* gnu/packages/patches/grep-gnulib-lock.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-30 08:08:52 +03:00
Kei Kebreau 3c8ba11a97
Update e-mail for Kei Kebreau.
* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
2017-08-29 20:13:24 -04:00
Leo Famulari 9baa969758
gnu: libzip: Fix CVE-2017-12858.
* gnu/packages/patches/libzip-CVE-2017-12858.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/compression.scm (libzip)[source]: Use it.
2017-08-27 19:51:45 -04:00
Leo Famulari 1c059a6e16
gnu: wxwidgets: Update to 3.0.3.
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.3.
[source]: Remove 'wxwidgets-fix-windowGTK.patch'.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-27 16:04:25 -04:00
Marius Bakke 72e2815d18
Merge branch 'core-updates' 2017-08-26 15:15:49 +02:00
Efraim Flashner f81039058c
gnu: qemu: Fix CVE-2017-12809.
* gnu/packages/virtualization.scm (qemu)[source]: Add patch.
* gnu/packages/patches/qemu-CVE-2017-12809.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-23 21:56:55 +03:00
Efraim Flashner f00e328fd3
gnu: openjpeg: Fix CVE-2017-12982.
* gnu/packages/image.scm (openjepg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-23 21:07:07 +03:00
Marius Bakke 2718a9cd09
Merge branch 'master' into core-updates 2017-08-21 02:40:37 +02:00
Kei Kebreau 6d7d9d9507
gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}.
* gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
2017-08-20 08:35:45 -04:00
Tobias Geerinckx-Rice b7585ca3b9
gnu: lz4: Update to 1.8.0.
* gnu/packages/compression.scm (lz4): Update to 1.8.0.  Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-19 02:17:42 +02:00
Leo Famulari d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904.
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
2017-08-18 17:24:47 -04:00
Marius Bakke 8c0c0c4def
gnu: python-pygit2: Update to 0.26.0.
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
2017-08-18 21:33:31 +02:00
Thomas Danckaert cc81f1c349
gnu: freerdp: Revert to version 1.1.
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
  branch 1.1.  [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
  freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
  gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-08-18 14:52:35 +02:00
Efraim Flashner c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64.
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-18 15:50:25 +03:00
Eric Bavier 623cc34cd2
gnu: rpm: Update to 4.13.0.1.
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch.  Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 21:39:18 -05:00
Efraim Flashner e3b861ce38
gnu: python-cython: Update to 0.26.
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
Efraim Flashner 3837108e40
gnu: bcftools: Fix building on aarch64.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
Mark H Weaver 09ec5a0f0c
Merge branch 'master' into core-updates 2017-08-15 03:10:14 -04:00
Marius Bakke f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
Leo Famulari 15428168ea
gnu: cvs: Fix CVE-2017-12836.
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
Alex Vong f152208b0d
gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-13 18:28:27 +02:00
Marius Bakke d5daf6fbe0
gnu: curl: Fix i686 test failure.
* gnu/packages/patches/curl-bounds-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
2017-08-13 16:46:41 +02:00
Alex Vong bfcdf88760
gnu: catdoc: Fix CVE-2017-11110.
* gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (catdoc)[source]: Use it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-12 15:30:23 +02:00
Mark H Weaver 3785e42e52
Merge branch 'master' into core-updates 2017-08-11 03:49:24 -04:00
Marius Bakke c2f93e9c07
gnu: openjpeg: Update to 2.2.0 [security fixes].
In addition to the patches we already had (which are not mentioned in the
ChangeLog, but verified by following their respective GitHub issues) this
release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158,
CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628.

See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details.

* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch,
  gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.2.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch
hard-coded openjpeg-2.1 path.
2017-08-10 22:23:31 +02:00
Mark H Weaver cc294bcee6
Merge branch 'master' into core-updates 2017-08-09 17:25:31 -04:00
Ben Woodcroft 63755fcd65
gnu: ruby-puma: Update to 3.9.1.
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
Mark H Weaver 2d9495da23
Merge branch 'master' into core-updates 2017-08-07 16:45:16 -04:00
Leo Famulari 149f668821
gnu: texlive: Update to 2017.
* gnu/packages/tex.scm (texlive, texlive-texmf): Update to 2017.
(texlive-texmf-src): Update to 20170524. Remove
'texlive-texmf-CVE-2016-10243.patch'.
(texlive-bin, texlive-extra-src): Update to 20170524.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 12:08:03 +02:00
Tobias Geerinckx-Rice d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
Mark H Weaver f167595ba1
Merge branch 'master' into core-updates 2017-08-06 00:23:20 -04:00
Mark H Weaver e3df6938ac
gnu: libtasn1: Add replacement to fix CVE-2017-10790.
Based on commit 01a61d7040
by Leo Famulari <leo@famulari.name>.

* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.
2017-08-06 00:21:09 -04:00
Leo Famulari 01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
Julien Lepiller 1cec346232
gnu: php: Update to 7.1.8.
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
Tobias Geerinckx-Rice f58be41761
gnu: fabric: Update to 1.13.2.
* gnu/packages/admin.scm (fabric): Update to 1.13.2.  Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
Efraim Flashner edd08fb7ac
gnu: glibc@2.22: Fix security issues.
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.

* gnu/packages/base.scm (glibc@2.22)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
Efraim Flashner a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.23)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
Efraim Flashner 575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
* gnu/packages/base.scm (glibc@2.24)[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
Marius Bakke aa9780daf9
Merge branch 'master' into core-updates 2017-08-01 23:42:28 +02:00
Ludovic Courtès 04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
Muriithi Frederick Muriuki 269504a797
gnu: python-pbr-minimal: Update to 3.0.1
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
Ludovic Courtès 58dce7bfb5
gnu: libgit2: Update to 0.26.0.
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0.  Remove
"libgit2-use-after-free.patch".
* gnu/packages/patches/libgit2-use-after-free.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-31 15:23:05 +02:00
Peter Mikkelsen a4078acf4a
gnu: erlang: Fix man-pages search path of 'erl -man'.
* gnu/packages/patches/erlang-man-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/erlang.scm (erlang)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
Marius Bakke e0b9e377f1
Merge branch 'master' into core-updates 2017-07-28 00:34:13 +02:00
Marius Bakke bd51224936
gnu: nss, nss-certs: Update to 3.32.
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes>

* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
2017-07-28 00:07:28 +02:00
Kei Kebreau 8ad40a69d1
gnu: evince: Update to 3.24.1.
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-25 18:41:05 -04:00
Kei Kebreau c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
2017-07-25 14:11:20 -04:00
Ludovic Courtès 726ecfeb3a
gnu: Add guile2.0-bytestructures.
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
2017-07-25 17:46:17 +02:00
Christopher Baines d61a894bfa
gnu: gnome: Add deja-dup.
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
2017-07-24 20:05:49 +01:00
Ben Woodcroft d3dce32216
gnu: metabat: Fix boost-related compilation issue.
Reported by Leo Famulari.

* gnu/packages/patches/metabat-fix-boost-issue.patch: New file.
* gnu/packages/bioinformatics.scm (metabat): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 22:35:52 +10:00
Leo Famulari 6c1a317e29
Merge branch 'master' into core-updates 2017-07-23 03:42:12 -04:00
Ben Woodcroft f3f68a442c
gnu: metabat: Update to 2.11.1.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft 0620387a59
gnu: bcftools: Update to 1.5.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft 98593f9f51
gnu: bcftools: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
Ryan Moe 36378bd57e
gnu: quassel: Enable TLS.
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:04:53 -04:00
Marius Bakke aa51da7eef
gnu: Remove python-fake-factory leftovers.
This is a followup to c799eb2eb8.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-22 15:07:45 +02:00
Marius Bakke 2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0.
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
2017-07-22 14:31:28 +02:00
Alex Vong 81c35029d4
gnu: heimdal: Fix CVE-2017-{6594,11103}.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/kerberos.scm (heimdal)[source]: Use them.
2017-07-20 15:33:53 -04:00
Leo Famulari 8582e03ae5
gnu: Remove a left-over patch.
This is a followup to commit 426b0b898f.

* gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-20 09:00:36 -04:00
Jonathan Brielmaier 05c8851695
gnu: Add libusb@0.1.
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:52 +02:00
Ludovic Courtès 2acfe022a7
gnu: guile-static-stripped: Update to 2.2.
* gnu/packages/make-bootstrap.scm (%guile-static): Replace GUILE-2.0
with GUILE-2.2.  Use "guile-2.2-default-utf8.patch" instead of
"guile-default-utf8.patch".
* gnu/packages/patches/guile-2.2-default-utf8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-18 15:31:12 +02:00
Ludovic Courtès 920f2c42ce
gnu: guile: Make relocatable patch version-independent.
* gnu/packages/patches/guile-relocatable.patch: Use
SCM_EFFECTIVE_VERSION instead of "2.0".
2017-07-18 15:31:12 +02:00
Leo Famulari 4c4485f304
gnu: qemu: Fix CVE-2017-11334.
* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2017-07-17 23:47:03 -04:00
Leo Famulari 144c8db9bd
gnu: chicken: Fix CVE-2017-11343.
* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
2017-07-17 23:47:00 -04:00
Efraim Flashner 7ad2a4f1d5
gnu: supertuxkart: Fix build on aarch64.
* gnu/packages/games.scm (supertuxkart)[source]: Add patch.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-17 15:29:56 +03:00
Ricardo Wurmus 5beecc320e
gnu: Add sooperlooper.
* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (sooperlooper): New variable.
2017-07-17 14:01:47 +02:00
Marius Bakke 5887d554ec
gnu: evince: Fix CVE-2017-1000083.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evince)[source]: Use it.
2017-07-13 21:11:15 +02:00
Ludovic Courtès 2f0d1b9dd2
gnu: ath9k-htc-firmware: Adjust Binutils patch to 2.28.
* gnu/packages/patches/ath9k-htc-firmware-binutils.patch: Remove last
hunk, which is now in Binutils 2.28.
2017-07-13 00:28:07 +02:00
Leo Famulari d89ce52096
gnu: spice: Fix CVE-2017-7506.
* gnu/packages/patches/spice-CVE-2017-7506.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (spice)[source]: Use it.
2017-07-12 16:27:40 -04:00
Kei Kebreau 082725b502
gnu: hop: Update to 3.1.0-pre2.
* gnu/packages/scheme.scm (hop): Update to 3.1.0-pre2.
[source]: Remove unnecessary patch.
[arguments]: Enable tests; disable parallel building; specify BIGLOO in
make-flags.
[inputs]: Add libgc, libunistring, libuv, pcre and sqlite.
* gnu/local.mk (dist_patch_DATA): Remove unnecessary patch.
* gnu/packages/patches/hop-linker-flags.patch: Delete file.
2017-07-10 19:35:44 -04:00
Kei Kebreau 5e3ea571c5
gnu: bigloo: Update to 4.3a.
* gnu/packages/scheme.scm (bigloo): Update to 4.3a.
[source]: Remove old patch. Add snippet.
[arguments]: Adjust the build phases accordingly.
[inputs]: Add libgc, libunistring, libuv, openssl, pcre and sqlite.
2017-07-10 19:35:44 -04:00
Leo Famulari c8eb2b8c60
Merge branch 'master' into core-updates 2017-07-10 14:37:53 -04:00
Leo Famulari 61adfb00b1
gnu: libtiff: Fix two integer overflows.
* gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.
2017-07-10 13:31:58 -04:00
Leo Famulari 625e7cd654
gnu: ncurses: Fix CVE-2017-10684 and CVE-2017-10685.
* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ncurses.scm (ncurses)[replacement]: New field.
(ncurses/fixed): New variable.
2017-07-10 13:31:58 -04:00
Mark H Weaver ef019092b9
gnu: poppler: Fix null pointer dereferences.
* gnu/packages/patches/poppler-fix-crash-with-broken-documents.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler/fixed)[source]: Add the patch.
2017-07-10 12:59:07 -04:00
Danny Milosavljevic ad22c71853
gnu: ghostscript: Make "/CreationDate", "/ModDate" optional, depending on environment variable.
* gnu/packages/patches/ghostscript-no-header-creationdate.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript): Use it.
2017-07-10 18:20:32 +02:00
Danny Milosavljevic 63eb4a2a91
gnu: ghostscript: Make XMP UUID headers optional, depending on environment variable.
* gnu/packages/patches/ghostscript-no-header-uuid.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript): Use it.
2017-07-10 18:20:25 +02:00
Danny Milosavljevic 5c549f2eac
gnu: ghostscript: Make "/ID" optional, depending on environment variable.
* gnu/packages/patches/ghostscript-no-header-id.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/ghostscript.scm (ghostscript): Use it.
2017-07-10 18:20:16 +02:00
Danny Milosavljevic 9146543f8d
gnu: groff: Remove timestamps.
Fixes <https://bugs.gnu.org/27593>.

* gnu/packages/patches/groff-source-date-epoch.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/groff.scm (groff)[source]: Add it.
2017-07-10 12:37:03 +02:00
Ricardo Wurmus b81dd94a79
gnu: dblatex: Use texlive-union.
* gnu/packages/patches/dblatex-remove-multirow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docbook.scm (dblatex)[source]: Use patch.
[inputs]: Replace "texlive" with a texlive-union.
2017-07-09 17:07:39 +02:00
Leo Famulari b3cc304b30
gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776.
This is a followup to commit 95bbaa02aa.
See <https://bugs.gnu.org/27621> for more information.

Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not
possible to graft the newer version in place of the older one.

This change leaves CVE-2017-9775 unfixed for now.

* gnu/packages/patches/poppler-CVE-2017-9776.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler-0.56.0): Replace with ...
(poppler/fixed): ... new variable.
(poppler)[replacement]: Replaced with poppler/fixed.
2017-07-09 02:25:27 -04:00
Ben Woodcroft 4732e6ee84
gnu: blast+: Update to 2.6.0.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.  Add patch.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
* gnu/packages/patches/blast+-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-08 12:05:59 +10:00