nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
17,039 Commits 1 Branch 0 Tags 104 MiB
Commit Graph

1024 Commits

Author SHA1 Message Date
Ben Woodcroft 1db791d5f4
gnu: ruby-rack: Update to 2.0.1. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.1.
[source]: Use GitHub and patch.
[native-inputs]: Add ruby-concurrent, ruby-minitest, ruby-minitest-sprint,
which.  Remove ruby-bacon.
[propagated-inputs]: Add ruby-concurrent.
* gnu/packages/patches/ruby-rack-ignore-failing-test.patch: New file.
* gnu/local.mk: Add it.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 3840373b39
gnu: ruby-puma: Update to 3.6.0. 
* gnu/packages/ruby.scm (ruby-puma): Update to 3.6.0.
[arguments]: Add 'delete-integration-tests' phase.
(gnu/packages/patches/ruby-puma-ignore-broken-test.patch):
Remove only one broken test.
 2016-08-10 15:36:33 +10:00
Tomáš Čech ba6d25f3b9
gnu: bash-completion: Update to 2.3. Update the patch. 
* gnu/packages/bash.scm (bash-completion): Update to 2.3.
* gnu/packages/patches/bash-completion-directories.patch: New version of
  the patch for the same purpose.
 2016-08-09 09:23:38 +02:00
Danny Milosavljevic 8d60dd7174
gnu: Add perl-net-dns-resolver-programmable. 
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable): New variable.
* gnu/packages/patches/perl-net-dns-resolver-programmable-Fix-broken-interface.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:36 -04:00
Leo Famulari 6b5e654dd4
gnu: fontconfig: Fix CVE-2016-5384. 
* gnu/packages/fontutils.scm (fontconfig)[replacement]: New field.
(fontconfig/fixed): New variable.
* gnu/packages/patches/fontconfig-CVE-2016-5384.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-08 20:33:21 -04:00
Mark H Weaver 536fc5f8cd
Merge branch 'core-updates' 2016-08-04 08:17:05 -04:00
Mark H Weaver 0832787e5c
Revert "Merge branch 'core-updates'" 
This reverts commit 455859a50f.
 2016-08-04 08:16:38 -04:00
Ricardo Wurmus 8b52167e77
gnu: python-statsmodels: Fix tests. 
* gnu/packages/statistics.scm (python-statsmodels): Add patch to fix tests.
(python2-statsmodels)[propagated-inputs]: Add python2-pytz.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-04 13:40:13 +02:00
Pjotr Prins 0a4ebe0148
gnu: Add Elixir. 
* gnu/packages/elixir.scm: New file.
* gnu/packages/patches/elixir-disable-failing-tests.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-08-02 18:31:29 +02:00
Ludovic Courtès 455859a50f
Merge branch 'core-updates' 2016-08-01 23:30:52 +02:00
Mark H Weaver 742effef56
gnu: openssh: Update to 7.3p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.3p1.
[source]: Remove patches.
* gnu/packages/patches/openssh-CVE-2015-8325.patch,
gnu/packages/patches/openssh-CVE-2016-6210-1.patch,
gnu/packages/patches/openssh-CVE-2016-6210-2.patch,
gnu/packages/patches/openssh-CVE-2016-6210-3.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-08-01 14:27:08 -04:00
Mark H Weaver 3d337bbc39
Merge branch 'master' into core-updates 2016-07-31 23:27:03 -04:00
Andreas Enge 42bf34298e
gnu: rapicorn: Add patch to handle isnan. 
* gnu/packages/patches/rapicorn-isnan.patch: New file.
* gnu/packages/graphics.scm (rapicorn)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2016-07-31 18:16:25 +02:00
Andreas Enge 101e847294
gnu: dealii: Update to 8.4.1. 
* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
 2016-07-31 15:22:41 +02:00
宋文武 85860fdf82
gnu: glibc-locales: Fix build. 
* gnu/packages/patches/glibc-locales.patch: Adjust to glibc-2.23.
* gnu/packages/base.scm (glibc-locales)[arguments]:
Pass 'lib_cv_complocaledir'.
 2016-07-31 10:42:47 +08:00
Eric Bavier 9b1ada4e81
gnu: Add Tux Paint. 
* gnu/packages/games.scm (tuxpaint): New variable.
* gnu/packages/patches/tuxpaint-stamps-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-29 21:50:15 -05:00
Alex Griffin 23319ed674
gnu: beets: Update to 1.3.19. 
* gnu/packages/music.scm (beets): Update to 1.3.19.
[source]: Remove patch to skip failing tests.
* gnu/packages/patches/beets-image-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-29 19:19:49 -04:00
Mark H Weaver 359aba76b6
Merge branch 'master' into core-updates 2016-07-29 18:29:58 -04:00
Mark H Weaver 9bdf56dc13
gnu: gd: Add fix for gd2_read test. 
* gnu/packages/patches/gd-fix-gd2-read-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add patch.
 2016-07-29 18:28:40 -04:00
Mark H Weaver 31c995f8af
Revert "gnu: gd: Add fix for gd2_read test." 
This reverts commit ce290354ec.
 2016-07-29 16:17:35 -04:00
Mark H Weaver ce290354ec
gnu: gd: Add fix for gd2_read test. 
* gnu/packages/patches/gd-fix-gd2-read-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add patch.
 2016-07-29 16:06:43 -04:00
Mark H Weaver 0bab3af078
Merge branch 'master' into core-updates 2016-07-29 14:18:07 -04:00
Mark H Weaver a81445737d
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
 2016-07-29 13:56:39 -04:00
Leo Famulari 49d725a108
Merge branch 'master' into core-updates 2016-07-28 16:46:27 -04:00
Leo Famulari a1dfa02233
Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]." 
This reverts commit ae46cd0e4c.
 2016-07-28 16:45:02 -04:00
Mark H Weaver 622c22ccb4
Merge branch 'master' into core-updates 2016-07-28 14:13:26 -04:00
Mark H Weaver ae46cd0e4c
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
 2016-07-28 14:06:12 -04:00
Ludovic Courtès 212163f8d5
gnu: dico: Patch 'idxgcide' bug. 
* gnu/packages/patches/dico-idxgcide-bug.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-28 14:18:59 +02:00
Andreas Enge e309c75610
Merge remote-tracking branch 'origin/master' into core-updates 2016-07-28 11:08:55 +02:00
Leo Famulari e335b82c4e
gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}]. 
* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
 2016-07-28 02:08:49 -04:00
Alex Griffin b111bdb667
gnu: calibre: Update to 2.63.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.

* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.

Signed-off-by: Roel Janssen <roel@gnu.org>
 2016-07-27 23:45:16 +02:00
Andreas Enge 14656f4495
Merge remote-tracking branch 'origin/master' into core-updates 2016-07-25 21:58:36 +02:00
Efraim Flashner d841a292b2
gnu: openssh: Fix CVE-2016-6210. 
* gnu/packages/ssh.scm (openssh)[source]: Add patches
openssh-CVE-2016-6210-1.patch, openssh-CVE-2016-6210-2.patch,
openssh-CVE-2016-6210-3.patch.
* gnu/packages/patches/openssh-CVE-2016-6210-1.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-2.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them.
 2016-07-24 16:18:41 +03:00
Ludovic Courtès 7575655212
Merge branch 'master' into core-updates 2016-07-20 11:42:17 +02:00
Eric Bavier 3b956a3392
gnu: llvm: Update to 3.8.1. 
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.8.1.
(llvm-3.7, clang-runtime-3.7, clang-3.7): New variables.
(clang-runtime-from-llvm)[arguments]: Disable tests, which were not
being run for previous versions anyhow but now fail hard.
(clang-from-llvm): Add #:patches keyword argument.
* gnu/packages/patches/clang-3.8-libc-search-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Dennis Mungai <dmngaie@gmail.scm>
 2016-07-18 20:28:21 -05:00
Leo Famulari 2d656a93db
Revert "gnu: gnutls: Fix test failure." 
This reverts commit 1d14bf9f5f.
 2016-07-18 12:47:18 -04:00
Mark H Weaver 273260646d
gnu: gd: Fix failing test on i686. 
* gnu/packages/patches/gd-fix-test-on-i686.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add the patch.
 2016-07-18 12:36:01 -04:00
Leo Famulari 1d14bf9f5f
gnu: gnutls: Fix test failure. 
* gnu/packages/patches/gnutls-fix-stale-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls/fixed): New variable.
 2016-07-18 12:30:39 -04:00
Leo Famulari a1537ac2ba
gnu: gd: Fix CVE-2016-{5766,6128,6132,6214}. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gd.scm (gd): Use patches.
 2016-07-16 12:49:22 -04:00
Ricardo Wurmus 0e6ee10c07
gnu: libmtp: Update to 1.1.11. 
* gnu/packages/patches/libmtp-devices.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.11.
 2016-07-10 18:02:04 +02:00
Ben Woodcroft ec2a67de88
gnu: Add python-dendropy. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-09 08:00:34 +10:00
Efraim Flashner 6baa83d283
gnu: sudo: Update to 1.8.17p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.17p1.
[source]: Remove patch.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-07-06 07:28:09 +03:00
Efraim Flashner dbd6bc5cc6
gnu: ninja: Update to 1.7.1. 
* gnu/packages/ninja.scm (ninja): Update to 1.7.1.
* gnu/packages/patches/ninja-tests.patch: Update patch.
 2016-07-03 12:00:25 +03:00
Efraim Flashner 6a628e8ba7
gnu: openimageio: Update to 1.6.15. 
* gnu/packages/graphics.scm (openimageio): Update to 1.6.15.
[source]: Remove patch.
* gnu/packages/patches/openimageio-boost-1.60.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-07-03 06:44:49 +03:00
Leo Famulari 9996ab16e6
gnu: gimp: Fix CVE-2016-4994. 
* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gimp.scm (gimp): Use it.
 2016-07-02 10:13:55 -04:00
Ricardo Wurmus b0069a6777
gnu: avrdude: Use libusb-compat. 
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
 2016-06-29 07:15:33 +02:00
Ben Woodcroft 94ff31572d
gnu: Add khmer. 
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-27 21:35:16 +10:00
Ludovic Courtès 01497dfe6c
Merge branch 'master' into core-updates 2016-06-27 09:30:01 +02:00
David Craven 9dd674db01
daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'. 
Partly fixes <http://bugs.gnu.org/22459>.
Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>.

* nix/libstore/globals.cc (Settings::processEnvironment()): Change
'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
* nix/local.mk (libstore_a_CPPFLAGS): Likewise.
* guix/config.scm.in (%config-directory): Likewise.
* build-aux/test-env.in: Likewise.
* gnu/packages/patches/hydra-automake-1.15.patch: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-26 23:11:07 +02:00
Leo Famulari 88c8d72f3c
gnu: beets: Update to 1.3.18. 
* gnu/packages/patches/beets-image-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (beets): Update to 1.3.18.
[source]: Use patch.
 2016-06-22 02:38:46 -04:00
Jan Nieuwenhuizen a837997cab
gnu: nasm: Make build bit-reproducible. 
* gnu/packages/patches/nasm-no-ps-pdf.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/assembly.scm (nasm): Use it.  Remove ghostscript, do not
build PS or PDF docs.  Makes build bit-reproducible.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-21 23:14:05 +02:00
Ben Woodcroft 9270298f75
gnu: Add ruby-puma. 
gnu/packages/ruby.scm (ruby-puma): New variable.
gnu/packages/patches/ruby-puma-ignore-broken-test.patch: New file.
gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-21 21:46:45 +10:00
Ludovic Courtès c0eeccbc24
Merge branch 'master' into core-updates 2016-06-17 15:48:27 +02:00
Carlo Zancanaro 3d1240aa25
gnu: Add awesome. 
* gnu/packages/wm.scm (awesome): New variable.
* gnu/packages/patches/awesome-reproducible-png.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-16 14:29:43 +02:00
Leo Famulari 9c4a8514d6
gnu: openssl: Fix CVE-2016-2177 and CVE-2016-2178. 
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (openssl/fixed): Use them.
 2016-06-15 10:48:13 -04:00
Hartmut Goebel d3a858cb32
gnu: Add teensy-loader-cli. 
* gnu/packages/flashing-tools.scm (teensy-loader-cli): New variable.
* gnu/packages/patches/teensy-loader-cli-help.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-15 15:27:48 +02:00
Ludovic Courtès 65efa9ba9c
gnu: mit-krb5: Update to 1.14.2. 
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.2.
[source]: Remove 'patches'.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-06-14 21:29:02 +02:00
Ludovic Courtès 28206a8ebf
gnu: automake: Adjust test to ignore new gzip warnings. 
* gnu/packages/patches/automake-test-gzip-warning.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-14 09:41:38 +02:00
Leo Famulari 28b33172c9
gnu: libxslt: Update to 1.1.29. 
* gnu/packages/patches/libxslt-CVE-2015-7995.patch,
gnu/packages/patches/libxslt-remove-date-timestamps.patch: Delete files.
* gnu/packages/xml.scm: Update to 1.1.29.
[source]: Remove patches.
 2016-06-12 22:09:39 -04:00
Leo Famulari ee86e7e148
Merge branch 'master' into core-updates 2016-06-12 22:09:26 -04:00
Leo Famulari 436dd04636
gnu: expat: Fix CVE-2012-6702 and CVE-2016-5300. 
* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (expat/fixed): Use it.
 2016-06-10 20:33:45 -04:00
Taylan Ulrich Bayırlı/Kammer 7c6058c082 gnu: higan: Various improvements. 
* gnu/packages/games.scm (higan): Use semi-official repository at GitLab
(using hotfix tag 098b which is equivalent to official release 098).
Add a patch to remove the build flag -march=native.  Set profile to
balanced.
* gnu/packages/patches/higan-remove-march-native-flag.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-10 17:40:27 +03:00
Mark H Weaver 993b400acb
Revert "gnu: libxml2: Add fix for CVE-2016-1762." 
This reverts commit 6e4f18cfdd.
 2016-06-08 18:17:13 -04:00
Mark H Weaver 6e4f18cfdd
gnu: libxml2: Add fix for CVE-2016-1762. 
* gnu/packages/patches/libxml2-CVE-2016-1762.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add patch.
 2016-06-08 14:26:54 -04:00
Mark H Weaver 98d9182205
gnu: icecat: Add fixes for CVE-2016-{2818,2819,2821,2824,2828,2831}. 
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-06-08 14:26:54 -04:00
Mark H Weaver c7c49446eb
gnu: libvpx: Add fix for CVE-2016-2818. 
* gnu/packages/patches/libvpx-CVE-2016-2818.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
 2016-06-08 14:26:54 -04:00
Ben Woodcroft dae620b8fe
gnu: Add ruby-concurrent. 
* gnu/packages/ruby.scm (ruby-concurrent): New variable.
* gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-08 21:36:02 +10:00
Ben Woodcroft 1e12924ae5
gnu: Add ruby-tzinfo-data. 
* gnu/packages/ruby.scm (ruby-tzinfo-data): New variable.
* gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-08 21:28:20 +10:00
Ludovic Courtès aeafff536f
Merge branch 'master' into core-updates 2016-06-07 11:54:03 +02:00
Ludovic Courtès 9dee9e8ffe
Revert "gnu: Default to GCC 5." 
This reverts commit e3d0fcbf7e.
This is a temporary measure until GCC 5 builds on ARM, see:

  https://gcc.gnu.org/bugzilla/show_bug.cgi?id=71399
 2016-06-07 10:52:04 +02:00
Manolis Ragkousis 5d4d7a9aa9
gnu: glibc-hurd: Update to 20160518. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518.
  [propagated-inputs]: Use hurd-core-headers.
  [native-inputs]: Remove libpthread's source and "patch/libpthread-patch".
  [arguments]: Add augment-libc.so and pre-configure-set-pwd phases.
  Remove prepare-libpthread phase.  Stop removing "--with-headers="
  from original-configure-flags.
* gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch.
* gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-06-06 14:42:45 +03:00
Leo Famulari 1c5ee417f4
gnu: imagemagick: Update to 6.9.4-7. 
* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-7.
[source]: Remove patch.
 2016-06-03 16:45:13 -04:00
Leo Famulari 1c6303fae0
gnu: icedtea: Update to 1.13.11. 
Fixes CVE-2016-{0686, 0687, 0695, 3425, 3427}.

* gnu/packages/patches/icedtea-remove-overrides.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (icedtea): Update to 1.13.11.
[source]: Use the patch.
[inputs]: Add libxcomposite.
 2016-06-01 02:29:01 -04:00
Leo Famulari e88eb07110
gnu: imagemagick: Fix CVE-2016-5118. 
* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (imagemagick): Use it.
 2016-05-31 13:38:40 -04:00
Leo Famulari 4d93a76138
gnu: graphicsmagick: Update to 1.3.24 [security update]. 
Fixes CVE-2016-{2317, 2318, 5118} and many other security issues
described in 'NEWS.txt'.

* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.24.
[source]: Remove patch.
 2016-05-31 13:33:09 -04:00
Leo Famulari df2dd07b88
gnu: libxml2: Update replacement to 2.9.4 [security fixes]. 
This fixes CVE-2016-{1762, 1833, 1834, 1835, 1836, 1837, 1838, 1839,
1840, 3627, 3705, 4483}.

* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2/fixed): Update to 2.9.4.
[source]: Remove patches.
 2016-05-30 21:47:40 -04:00
Efraim Flashner fd1461879c
gnu: mcrypt: Fix CVE-2012-4409, CVE-2012-4426, CVE-2012-4527. 
* gnu/packages/mcrypt.scm (mcrypt)[source]: Add patches.
* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4426.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 21:57:36 +03:00
Efraim Flashner c1dbd3a870
gnu: wordnet: Fix CVE-2008-2149, CVE-2008-3908. 
* gnu/packages/wordnet.scm (wordnet)[source]: Add patches.
* gnu/packages/patches/wordnet-CVE-2008-2149.patch,
gnu/packages/patches/wordnet-CVE-2008-3908-pt1.patch,
gnu/packages/patches/wordnet-CVE-2008-3908-pt2.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 20:14:06 +03:00
Efraim Flashner 1f521b7055
gnu: id3lib: Fix CVE-2007-4460. 
* gnu/packages/mp3.scm (id3lib)[source]: Add patch.
* gnu/packages/patches/id3lib-CVE-2007-4460.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 20:13:24 +03:00
Leo Famulari 726f088884
gnu: devil: Fix CVE-2009-3994. 
* gnu/packages/patches/devil-CVE-2009-3994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (devil): Use it.
 2016-05-30 12:36:26 -04:00
Alex Kost 4509ec72a4
gnu: emacs: Fix indentation of scheme keyword lists. 
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
 2016-05-30 13:09:43 +03:00
Efraim Flashner 5f1ba08953
gnu: gegl: Fix CVE-2012-4433. 
* gnu/packages/gimp.scm (gegl)[source]: Add patch.
* gnu/packages/patches/gegl-CVE-2012-4433.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 12:09:17 +03:00
Efraim Flashner 7d48938a59
gnu: vte-0.28: Fix CVE-2012-2738. 
* gnu/packages/gnome.scm (vte-0.28)[source]: Add patches.
* gnu/packages/patches/vte-CVE-2012-2738-pt1.patch,
gnu/packages/patches/vte-CVE-2012-2738-pt2.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 12:09:15 +03:00
Efraim Flashner 4f3e02f198
gnu: t1lib: Fix CVE-2010-2642, CVE-2011-{0764, 1552, 1553, 1554}. 
* gnu/packages/fontutils.scm (t1lib)[source]: Add patches.
* gnu/packages/patches/t1lib-CVE-2010-2642.patch,
gnu/packages/patches/t1lib-CVE-2011-0764.patch,
gnu/packages/patches/t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 12:09:14 +03:00
Efraim Flashner 538884ccef
gnu: jansson: Fix CVE-2016-4425. 
* gnu/packages/web.scm (jansson)[source]: Add patch.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 09:57:16 +03:00
Efraim Flashner 9116f12690
gnu: antiword: Fix CVE-2014-8123. 
* gnu/packages/textutils.scm (antiword)[source]: Add patch.
* gnu/packages/patches/antiword-CVE-2014-8123: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 09:57:09 +03:00
Efraim Flashner 6447e19108
gnu: a2ps: Fix CVE-2001-1593, CVE-2014-0466. 
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patches.
* gnu/packages/patches/a2ps-CVE-2001-1593.patch,
gnu/packages/patches/a2ps-CVE-2014-0466.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 07:44:29 +03:00
Leo Famulari ccda7c8317
gnu: pcre2: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pcre.scm (pcre2): Use it.
 2016-05-29 23:57:31 -04:00
Leo Famulari 0d567b5531
gnu: libyaml: Fix CVE-2014-9130. 
* gnu/packages/patches/libyaml-CVE-2014-9130.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (libyaml): Use it.
 2016-05-29 23:48:28 -04:00
Leo Famulari d8862778c1
gnu: graphicsmagick: Fix CVE-2016-5118. 
* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (graphicsmagick): Use it.
 2016-05-29 23:46:21 -04:00
Efraim Flashner b3d20b8280
gnu: vorbis-tools: Fix CVE-2014-9638, CVE-2014-9639, CVE-2014-9640. 
* gnu/packages/xiph.scm (vorbis-tools)[source]: Add patches.
* gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch,
gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 06:42:02 +03:00
Efraim Flashner e99dd67ad8
gnu: libtar: Fix CVE-2013-4420. 
* gnu/packages/compression.scm (libtar)[source]: Add patch.
* gnu/packages/patches/libtar-CVE-2013-4420.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.

This is a follow-up to 89d80159b1.
 2016-05-30 06:04:46 +03:00
Leo Famulari 65da8dd01e
gnu: rpm: Fix CVE-2014-8118. 
* gnu/packages/patches/rpm-CVE-2014-8118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/package-management.scm (rpm): Use it.
 2016-05-29 14:02:08 -04:00
Leo Famulari 1d982d787d
gnu: procmail: Fix CVE-2014-3618. 
* gnu/packages/patches/procmail-CVE-2014-3618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (procmail): Use it.
 2016-05-29 13:12:16 -04:00
Efraim Flashner 32fddd8e29
gnu: lua-5.1: Fix CVE-2014-5461. 
* gnu/packages/lua.scm (lua-5.1)[source]: Add patch.
* gnu/packages/patches/lua-CVE-2014-5461: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-29 09:47:46 +03:00
Leo Famulari b5d08d7c28
gnu: gd: Update to 2.2.1 [fixes CVE-2015-{8874, 8877}]. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gd.scm (gd): Update to 2.2.1.
[source]: Remove patch. Update source URL.
 2016-05-27 12:33:42 -04:00
Ludovic Courtès 2ca55f939c
gnu: rush: Fix CVE-2013-6889. 
* gnu/packages/patches/rush-CVE-2013-6889.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rush.scm (rush): Use it.
 2016-05-26 22:51:12 +02:00
Ludovic Courtès 493e9a5a8f
gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705. 
* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
 2016-05-24 14:15:18 +02:00
Ludovic Courtès bc73a84398
Merge branch 'master' into core-updates 2016-05-23 15:02:26 +02:00
Leo Famulari 119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283. 
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
 2016-05-19 10:27:18 -04:00
Leo Famulari fb2b0f5c87
gnu: gd: Fix-CVE-2016-3074. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-05-17 13:18:15 -04:00
Federico Beffa 1c29f3ef84 gnu: emacs-constants: Remove old patch. 
* gnu/packages/patches/emacs-constants-lisp-like.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove entry for above patch.
 2016-05-17 14:17:38 +02:00
Ludovic Courtès 74d637397b
gnu: tar: Update to 1.29. 
* gnu/packages/base.scm (tar): Update to 1.29.
[source]: Remove 'tar-d_ino_in_dirent-fix.patch'.
[arguments]: New field.
* gnu/packages/patches/tar-d_ino_in_dirent-fix.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-05-17 10:46:26 +02:00
Efraim Flashner 7d0c3c8d01
gnu: python-pandas: Update to 0.18.1. 
* gnu/packages/python.scm (python-pandas): Update to 0.18.1.
[native-inputs]: Remove python-setuptools.
[properties]: Define python2-pandas.
(python2-pandas)[native-inputs]: Add python2-setuptools.
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 17:39:42 +03:00
Efraim Flashner 30897c60a4
gnu: mdadm: Update to 3.4. 
* gnu/packages/linux.scm (mdadm): Update to 3.4.
[source]: Remove patch.
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 06:10:06 +03:00
Jan Nieuwenhuizen 9365ee1c46
gnu: Add gnome-tweak-tool. 
* gnu/packages/patches/gnome-tweak-tool-search-paths.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-tweak-tool): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-15 13:03:15 -04:00
Leo Famulari 4fa05a8198
gnu: libarchive: Update to 3.2.0. 
* gnu/packages/patches/libarchive-CVE-2013-0211.patch,
gnu/packages/patches/libarchive-CVE-2016-1541.patch,
gnu/packages/patches/libarchive-bsdtar-test.patch,
gnu/packages/patches/libarchive-fix-lzo-test-case.patch,
gnu/packages/patches/libarchive-mtree-filename-length-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/backup.scm (libarchive): Update to 3.2.0.
[source]: Remove deleted patches.
[replacement]: Remove.
(libarchive/fixed): Remove variable.
 2016-05-13 02:23:38 -04:00
Leo Famulari eb74eb4199
Merge branch 'master' into core-updates 2016-05-13 02:08:11 -04:00
Mark H Weaver 207c604637
Merge branch 'gnome-updates' 2016-05-12 18:48:36 -04:00
Mark H Weaver ef06d54a9b
gnu: icecat: Update to 38.8.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch,
gnu/packages/patches/icecat-update-bundled-graphite2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu1.
[source] Remove deleted patches.
 2016-05-12 18:15:07 -04:00
Eric Bavier 889187a464 gnu: Add NetCDF. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
 2016-05-12 19:59:53 +00:00
Eric Bavier b8d9c93bde gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH. 
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-05-12 19:59:52 +00:00
Eric Bavier 528bb46436 gnu: Add HYPRE. 
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Eric Bavier b4e655e5f1 gnu: Add doc++. 
* gnu/packages/documentation.scm (doc++): New variable.
* gnu/packages/patches/doc++-include-directives.patch,
  gnu/packages/patches/doc++-segfault-fix.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Leo Famulari e7806e6caa
gnu: libarchive: Fix CVE-2016-1541. 
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-CVE-2016-1541.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-11 21:35:35 -04:00
Mark H Weaver 9f5e796753
Merge branch 'master' into gnome-updates 2016-05-11 13:37:47 -04:00
Mark H Weaver e2b89203db
gnu: totem: Fix build on i686. 
* gnu/packages/patches/totem-debug-format-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (totem)[source]: Add patch.
 2016-05-11 10:22:00 -04:00
Efraim Flashner cc6561e6a1
gnu: qemu: Update to 2.5.1. 
* gnu/packages/qemu.scm (qemu): Update to 2.5.1.
[source]: Remove patches.
* gnu/packages/patches/qemu-usb-ehci-oob-read.patch,
gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
gnu/packages/patches/qemu-CVE-2015-8558.patch,
gnu/packages/patches/qemu-CVE-2015-8567.patch,
gnu/packages/patches/qemu-CVE-2015-8613.patch,
gnu/packages/patches/qemu-CVE-2015-8619.patch,
gnu/packages/patches/qemu-CVE-2015-8701.patch,
gnu/packages/patches/qemu-CVE-2015-8743.patch,
gnu/packages/patches/qemu-CVE-2016-1568.patch,
gnu/packages/patches/qemu-CVE-2016-1922.patch,
gnu/packages/patches/qemu-CVE-2016-1981.patch,
gnu/packages/patches/qemu-CVE-2016-2197.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-09 20:43:35 +03:00
宋文武 6655a74326 Merge branch 'master' into gnome-updates 2016-05-08 17:54:46 +08:00
Alex Kost af5640d1dd gnu: tvtime: Update to 1.0.10. 
* gnu/packages/tv.scm (tvtime): Update to 1.0.10.
[source]: Remove patches.
[inputs]: Add 'alsa-lib'.
* gnu/packages/patches/tvtime-gcc41.patch,
gnu/packages/patches/tvtime-pngoutput.patch,
gnu/packages/patches/tvtime-videodev2.patch,
gnu/packages/patches/tvtime-xmltv.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-04 23:08:39 +03:00
Efraim Flashner 8c3e9a6a8d
gnu: gnupg: Update to 2.1.12. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.12.
[source]: Remove patch.
* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-04 22:20:45 +03:00
Mark H Weaver 8c15e084fe gnu: imlib2: Update to 1.4.9 [fixes CVE-2011-5326, CVE-2016-{3993,3994}]. 
* gnu/packages/image.scm (imlib2): Update to 1.4.9.
[source]: Remove patch.
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-04 13:51:48 -04:00
David Thompson d663e5e600
gnu: imagemagick: Update to 6.9.3-10. 
Fixes CVE-2016–3714.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.3-10.
[source]: Remove patch.
* gnu/packages/patches/imagemagick-test-segv.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove patch file from distribution.
 2016-05-04 13:22:52 -04:00
Mark H Weaver 4e9d04a80b Merge branch 'master' into gnome-updates 2016-05-04 11:43:50 -04:00
Manolis Ragkousis d46123aade gnu: procps: Make procps build on non Linux systems. 
* gnu/packages/patches/procps-non-linux.patch.patch: New patch.
* gnu/packages/linux.scm (procps)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-04 17:18:57 +03:00
Jan Nieuwenhuizen efc4eb1475
gnu: cross: Use CROSS_*_INCLUDE_PATH for system headers. 
* gnu/packages/patches/gcc-cross-environment-variables.patch: Also use CROSS_
variants: CROSS_C_INCLUDE_PATH, CROSS_CPLUS_INCLUDE_PATH,
CROSS_OBJC_INCLUDE_PATH, CROSS_OBJCPLUS_INCLUDE_PATH to be used for system
libraries, see
https://lists.gnu.org/archive/html/guix-devel/2016-04/msg00620.html.
* gnu/packages/cross-base.scm (cross-gcc, cross-gcc-arguments, cross-libc):
Use CROSS_*_INCLUDE_PATH (WAS: CPATH).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 17:45:29 +02:00
Mark H Weaver 0a17fd7c0b gnu: wpa-supplicant: Add fixes for CVE-2016-{4476,4477}. 
* gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Add patches.
 2016-05-03 09:39:59 -04:00
Roel Janssen 4c6aa73b8f
gnu: Add 4store. 
* gnu/packages/databases.scm (4store): New variable.
* gnu/packages/patches/4store-fix-buildsystem.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-02 14:45:57 -04:00
Leo Famulari 3854f3d7e4
gnu: ocaml: Fix CVE-2015-8869. 
* gnu/packages/patches/ocaml-CVE-2015-8869.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ocaml.scm (ocaml): Use it.
 2016-05-02 14:30:49 -04:00
Ricardo Wurmus aacb52fb0f gnu: Add portmidi. 
* gnu/packages/music.scm (portmidi): New variable.
* gnu/packages/patches/portmidi-modular-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-05-02 20:02:20 +02:00
Mathieu Lirzin c74c7c1317 gnu: libxslt: Make generated documentation reproducible. 
* gnu/packages/patches/libxslt-generated-ids.patch: New file.
* gnu/packages/patches/libxslt-remove-date-timestamps.patch: Likewise.
* gnu/packages/xml.scm (libxslt)[source]: Use them.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-02 17:54:01 +02:00
Mathieu Lirzin c3052d6bcd Merge branch 'master' into core-updates 2016-05-02 17:53:40 +02:00
宋文武 8e3593353e Revert "Revert "gnu: inkscape: Fix build with glibmm-2.48."" 
This reverts commit 267061ba0b.
 2016-05-02 22:06:39 +08:00
宋文武 6983ba5660 Revert "Revert "Merge branch 'gnome-updates'"" 
This reverts commit e969b140a4.
 2016-05-02 22:06:36 +08:00
Nicolas Goaziou d20708b6c5 gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-02 22:05:54 +08:00
Nicolas Goaziou acb31b5dcd
gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-01 17:58:39 -04:00
Leo Famulari e411ce1860
gnu: poppler: Fix CVE-2015-8868. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
* gnu/packages/patches/poppler-CVE-2015-8868.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-30 16:14:38 -04:00
Rob Syme b0e52f52b7 gnu: ruby: Update to 2.3.1. 
* gnu/packages/ruby.scm (ruby): Update to 2.3.1.
[origin] Add symlink patch.
* gnu/packages/patches/ruby-symlinkfix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-04-30 08:39:27 +10:00
Eric Bavier f36a1ebaab gnu: Add Fossil. 
* gnu/packages/version-control.scm (fossil): New variable.
* gnu/packages/patches/fossil-test-fixes.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-29 16:42:10 -05:00
Mark H Weaver dde2a94c09 gnu: icecat: Add fixes for CVE-2016-{2805,2807,2808,2814} etc. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-update-bundled-graphite2: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.

icecat fixup
 2016-04-28 10:25:19 -04:00
宋文武 6fdc73e099 gnu: fltk: Fix undefined symbol `Fl_XFont_On_Demand::value'. 
* gnu/packages/patches/fltk-xfont-on-demand.patch: New patch.
* gnu/packages/fltk.scm (fltk)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-28 12:23:51 +08:00
Eric Bavier f79ee25f32 gnu: woff2: Fix build parallelism. 
* gnu/packages/patches/woff2-libbrotli.patch: Add dependency of
executables on object files.
 2016-04-25 18:38:50 -05:00
Ludovic Courtès e3d0fcbf7e
gnu: Default to GCC 5. 
* gnu/packages/patches/gcc-libiberty-printf-decl.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source]: Use it.
(gcc): Switch to GCC-5.
* gnu/packages/commencement.scm (libstdc++-boot0): New variable.
(gcc-boot0)[inputs]: Add it.
[native-inputs]: Remove.
(gcc-toolchain-4.9): Switch to GCC-4.9.
(gcc-toolchain-5): Switch to GCC-FINAL.
* gnu-system.am (dist_patch_DATA): Add 'gcc-libiberty-printf-decl.patch'.
 2016-04-24 22:51:07 +02:00
Mark H Weaver e969b140a4 Revert "Merge branch 'gnome-updates'" 
This reverts commit 63655d459e, reversing
changes made to 80627f51f0.
 2016-04-23 13:13:53 -04:00
Mark H Weaver 267061ba0b Revert "gnu: inkscape: Fix build with glibmm-2.48." 
This reverts commit 0118c6ab62.
 2016-04-23 13:12:53 -04:00
Mark H Weaver 0118c6ab62 gnu: inkscape: Fix build with glibmm-2.48. 
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/inkscape.scm (inkscape)[source]: Add patch.
 2016-04-23 05:05:18 -04:00
Leo Famulari e993fb8493 gnu: imlib2: Fix CVE-2016-4024. 
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (imlib2): Use it.
 2016-04-22 23:59:37 -04:00
宋文武 63655d459e Merge branch 'gnome-updates' 2016-04-23 10:19:32 +08:00
Leo Famulari 67157996e2 gnu: openssh: Fix CVE-2015-8325. 
* gnu/packages/patches/openssh-CVE-2015-8325.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh): Use it.
 2016-04-17 13:48:31 -04:00
Ricardo Wurmus 534db46306 gnu: python-pandas: Fix test failures. 
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-pandas)[source]: Add patch.
 2016-04-17 11:36:25 +02:00
Jookia dbc3860ceb gnu: gtk+-2: Look in system data dirs for themes. 
* gnu/packages/patches/gtk2-theme-paths.patch: New patch.
* gnu/packages/gtk.scm (gtk+-2)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-16 11:46:50 +02:00
宋文武 7c951767c0 gnu: glib: Disable tests in build phases instead of patches. 
* gnu/packages/glib.scm (glib)[sources]: Remove glib-tests-desktop.patch,
glib-tests-prlimit.patch and glib-tests-gapplicatiotn.patch.
[arguments]: Add 'disable-falling-tests' phase.
* gnu/packages/patches/glib-tests-timer.patch: Adjust accordingly.
* gnu/packages/patches/glib-tests-desktop.patch,
  gnu/packages/patches/glib-tests-gapplication.patch,
  gnu/packages/patches/glib-tests-prlimit.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-16 11:44:24 +02:00
宋文武 7dd99e5573 gnu: glib: Drop glib-tests-homedir.patch. 
* gnu/packages/glib.scm (glib)[source]: Remove glib-tests-homedir.patch.
[arguments]: Set HOME and disable '/gdbus/codegen-peer-to-peer' test.
* gnu/packages/patches/glib-tests-homedir.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-16 11:43:54 +02:00
Eric Bavier 5391be116e gnu: fontforge: Make SVG builds reproducible. 
* gnu/packages/patches/fontforge-svg-modtime.patch: New file.
* gnu/packages/fontutils.scm (fontforge)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 579760d06e gnu: Add woff2. 
* gnu/packages/fontutils.scm (woff2): New variable.
* gnu/packages/patches/woff2-libbrotli.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 1555aee7d0 gnu: Add ttf2eot. 
* gnu/packages/fontutils.scm (ttf2eot): New variable.
* gnu/packages/patches/ttf2eot-cstddef.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 1e69db8f14 gnu: Add ttfautohint. 
* gnu/packages/fontutils.scm (ttfautohint): New variable.
* gnu/packages/patches/ttfautohint-source-date-epoch.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:28 -05:00
Efraim Flashner 58e87f66ce gnu: icecat: Update to 38.7.1-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-10 08:40:42 +03:00
Ludovic Courtès a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Ludovic Courtès 425b8537e8 gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu/packages/pcre.scm (pcre)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 22:55:23 +02:00
Ludovic Courtès e37595d961 gnu: glibc: Update to 2.23. 
* gnu/packages/base.scm (glibc): Update to 2.23.  Remove
"glibc-locale-incompatibility.patch" and "glibc-CVE-2015-7547.patch",
now unneeded.
[arguments]: Add "libc_cv_ssp_strong=no" to #:configure-flags.  Remove
now unneeded patching of 'configure'.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: Remove.
* gnu/packages/patches/glibc-locale-incompatibility.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2016-04-06 22:24:13 +02:00
Efraim Flashner 0ea4079f34 gnu: abiword: Update to 3.0.1. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-06 23:15:59 +03:00
Ludovic Courtès 933d2fe4cf Merge branch 'master' into core-updates 2016-04-06 12:00:29 +02:00
Mark H Weaver 37b2dba1cc gnu: libextractor: Improve ffmpeg-3 patch. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional
fixes and harmonize with patches in upstream repository.
 2016-04-04 23:49:48 -04:00
Mark H Weaver fd7fd3c167 gnu: libextractor: Add patch to fix build with ffmpeg-3. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
 2016-04-04 22:55:52 -04:00
Efraim Flashner 451c1436a3 gnu: mc: Update to 4.8.16. 
* gnu/packages/mc.scm (mc): Update to 4.8.16.
[source]: Remove patch.
* gnu/packages/patches/mc-fix-ncurses-build.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-02 23:39:32 +03:00
Ludovic Courtès 915363a3e2 gnu: wicd: Add template for WPA2-TTLS. 
* gnu/packages/patches/wicd-wpa2-ttls.patch: New file.
* gnu/packages/wicd.scm (wicd)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-01 13:59:58 +02:00
Ludovic Courtès f5480572d0 gnu: wicd: Update to 1.7.4. 
* gnu/packages/wicd.scm (wicd): Update to 1.7.4.
[source]: Remove 'wicd-template-instantiation.patch'.
* gnu/packages/patches/wicd-template-instantiation.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-01 13:59:58 +02:00
Mark H Weaver 51514e6959 gnu: expat: Update to 2.1.1. 
* gnu/packages/patches/expat-CVE-2015-1283.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xml.scm (expat): Update to 2.1.1.
[source]: Use bz2 tarball.  Remove patch.
 2016-03-25 21:38:16 -04:00
Mark H Weaver 58cc369f32 gnu: webkitgtk-2.4: Update to 2.4.10 [fixes many security flaws]. 
Fixes CVE-2014-1748, CVE-2015-1071, CVE-2015-1076, CVE-2015-1081,
CVE-2015-1083, CVE-2015-1120, CVE-2015-1122, CVE-2015-1127, CVE-2015-1153,
CVE-2015-1155, CVE-2015-3658, CVE-2015-3659, CVE-2015-3727, CVE-2015-3731,
CVE-2015-3741, CVE-2015-3743, CVE-2015-3745, CVE-2015-3747, CVE-2015-3748,
CVE-2015-3749, CVE-2015-3752, CVE-2015-5788, CVE-2015-5794, CVE-2015-5801,
CVE-2015-5809, CVE-2015-5822, and CVE-2015-5928.

* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.10.
[source]: Remove patch.
 2016-03-22 07:38:22 -04:00
Ludovic Courtès cd6cc144e0 Merge branch 'security-updates' 2016-03-22 00:14:03 +01:00
Leo Famulari 064503aaa2 gnu: Add python-rarfile. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): New
variables.
* gnu/packages/patches/python-rarfile-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-03-18 14:27:16 -04:00
Mark H Weaver e3d3546eda gnu: libotr: Fix tests on mips64el. 
* gnu/packages/patches/libotr-test-auth-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (libotr)[source]: Add patch.
 2016-03-17 19:05:08 -04:00
Mark H Weaver a3b84f70d8 Merge branch 'master' into security-updates 2016-03-15 12:40:53 -04:00
Efraim Flashner 20109e07bd gnu: gitolite: Update to 3.6.5. 
* gnu/packages/version-control.scm (gitolite): Update to 3.6.5.
[source]: Remove patch.
* gnu/packages/patches/gitolite-openssh-6.8-compat.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-03-15 07:10:35 +02:00
Mark H Weaver 2c9f0b0770 Merge branch 'master' into security-updates 2016-03-12 15:07:41 -05:00
Andreas Enge 8e755b1bcd gnu: mupdf: Simplify package. 
* gnu/packages/pdf.scm (mupdf)[source]: Drop patch and part of snippet
  modifying permissions of files added by the patch.
  [arguments]: Use #:make-flags instead of modified build and install phases.
  Drop superfluous module inclusion. Use modify-phases syntax.
* gnu/packages/patches/mupdf-buildsystem-fix.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-03-12 09:56:27 +01:00
Ludovic Courtès ef0f0d5f97 gnu: vorbis-tools: Patch buffer overflow [fixes CVE-2015-6749]. 
* gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xiph.scm (vorbis-tools)[source]: Use it.
 2016-03-11 16:33:50 +01:00
Mark H Weaver c3499ad6b8 gnu: icecat: Add several security fixes. 
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-bug-1248851.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-03-10 10:52:41 -05:00
Ludovic Courtès 4cff124bbf gnu: openssl: Update to 1.0.2g. 
* gnu/packages/tls.scm (openssl)[replacement]: Remove.
[version, source]: Bump to 1.0.2g.  Use "openssl-c-rehash-in.patch"
instead of "openssl-c-rehash.patch".
(openssl-1.0.2g): Remove.
* gnu-system.am (dist_patch_DATA): Remove "openssl-c-rehash.patch".
 2016-03-09 15:20:34 +01:00
Efraim Flashner e224495ce1 gnu: jasper: Add fixes for CVE-2016-1577, CVE-2016-2089, CVE-2016-2116. 
* gnu/packages/patches/jasper-CVE-2016-1557.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-03-08 11:54:58 +02:00
Andreas Enge d7c4619bd1 gnu: Add einstein. 
* gnu/packages/games.scm (einstein): New variable.
* gnu/packages/patches/einstein-build.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-03-05 18:44:43 +01:00
Leo Famulari d8173f21f7 gnu: perl: Replace with patched version [fixes CVE-2016-2381]. 
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl-fixed): New variable.
* gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
 2016-03-03 14:56:23 -05:00
Lukas Gradl e90819c40a gnu: Add procmail. 
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
 * gnu-system.am (dist_patch_DATA): Add it.
 * gnu/packages/mail.scm (procmail): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-02 20:44:18 -05:00
Mark H Weaver b134a80c36 gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]. 
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-03-02 15:13:15 -05:00
Leo Famulari 5e8276dcf4 gnu: ilmbase: Add patch to fix build on i686. 
Fixes <http://bugs.gnu.org/22049>.

* gnu/packages/patches/ilmbase-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (ilmbase)[source]: Add patch.
 2016-03-01 19:08:31 -05:00
Ludovic Courtès caeadfddb0 gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}]. 
See <http://openssl.org/news/secadv/20160301.txt>.
Also fixes <http://bugs.gnu.org/22831>.

* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
 2016-03-01 16:00:46 +01:00
Mark H Weaver 9579118922 gnu: bitlbee: Update to 3.4.1. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
 2016-02-27 21:10:56 -05:00
Ricardo Wurmus a003b5b650 gnu: scribus: Update to 1.5.1. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-02-27 16:34:20 +01:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste. 
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-02-25 11:01:45 -08:00
Mark H Weaver e62b5c6903 Merge branch 'media-updates' 2016-02-25 13:50:19 -05:00
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]. 
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:09 -05:00
Andy Wingo 2ae7a55062 gnu: xf86-video-vmware: Update to 13.1.0. 
* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bcd4a74039 gnu: xf86-video-trident: Update to 1.3.7. 
* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 816decebf2 gnu: xf86-video-tdfx: Update to 1.4.6. 
* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 5f59f5103a gnu: xf86-video-sis: Update to 0.10.8. 
* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch,
  gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8.
  [source]: Remove patches.
 2016-02-24 11:49:57 -05:00
Andy Wingo fc1172f787 gnu: xf86-video-siliconmotion: Update to 1.7.8. 
* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch:
  Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bfe27469b4 gnu: xf86-video-r128: Update to 6.10.1. 
* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea192db119 gnu: xf86-video-mga: Update to 1.6.4. 
* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Leo Famulari 4e58a402ff gnu: cpio: Add fix for CVE-2016-2037. 
* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio)[source]: Add patch.
 2016-02-19 18:04:15 -05:00
Mark H Weaver 3729ff4183 gnu: glibc: Add fix for CVE-2015-7547. 
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Add patch.
 2016-02-19 00:42:10 -05:00
Pjotr Prins 552f5c009e gnu: Add slurm. 
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-02-15 22:47:47 +01:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]. 
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
 2016-02-15 02:51:35 -05:00
Jan Nieuwenhuizen a747baba00 gnu: Add ocaml-findlib. 
* gnu/packages/ocaml.scm (ocaml-findlib): New variable.
* gnu/packages/patches/ocaml-findlib-make-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
 2016-02-13 09:15:55 +01:00
Mark H Weaver 3a7261bf96 gnu: gnupg: Add upstream fix for test failures on x86_64. 
Fixes <https://debbugs.gnu.org/22558>.

* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
 2016-02-12 21:02:24 -05:00
Jan Nieuwenhuizen 511539ae81 gnu: Add tclxml. 
* gnu/packages/patches/tclxml-3.2-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tclxml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 19:13:05 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes. 
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
 2016-02-11 14:59:16 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
 2016-02-10 10:41:11 -05:00
Christopher Allan Webber 6f74aecdb3 gnu: xdotools: Update to 3.20150503.1 
* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1.
* gnu/packages/patches/xdotool-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 15:39:51 -08:00
Christopher Allan Webber a05d1d82c0 gnu: Add python-pygpgme 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables.
* gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 11:30:35 -08:00
Mark H Weaver 08cb746f08 gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites. 
* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-02-06 08:48:20 -05:00
Mark H Weaver a7d8c466db gnu: icecat: Update to 38.6.0-gnu1. 
* gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1.
  [source]: Remove patches.
 2016-02-05 16:00:25 -05:00
Leo Famulari 90bcecc568 gnu: jasper: Add fixes for several security flaws. 
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-02-04 15:09:41 -05:00
Mark H Weaver 5fb205c638 gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f. 
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
 2016-02-04 00:15:21 -05:00
Federico Beffa e5045f303a gnu: Add emacs-constants. 
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-03 10:48:36 +01:00
Federico Beffa e037a09f1d gnu: Add emacs-scheme-complete. 
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2016-02-03 10:47:21 +01:00
Mark H Weaver fd9a5b0fc3 gnu: qemu: Update to 2.5.0; add fixes for security flaws. 
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
  gnu/packages/patches/qemu-CVE-2015-8558.patch,
  gnu/packages/patches/qemu-CVE-2015-8567.patch,
  gnu/packages/patches/qemu-CVE-2015-8613.patch,
  gnu/packages/patches/qemu-CVE-2015-8701.patch,
  gnu/packages/patches/qemu-CVE-2015-8743.patch,
  gnu/packages/patches/qemu-CVE-2016-1568.patch,
  gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
  new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
  [source]: Remove old patches and add new ones.
  [arguments]: Add 'disable-test-qga' phase.
  (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
 2016-02-03 00:05:22 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
 2016-02-01 23:47:35 -05:00
Eric Bavier e3f755f44c gnu: Add pinball. 
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-01-31 23:46:30 -06:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
 2016-01-31 14:36:08 +02:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs. 
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-01-28 00:34:20 -05:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Mark H Weaver 86fa2ea92f gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}. 
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
  gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
  gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
  [source]: Add patches.
 2016-01-21 00:30:15 -05:00
Eric Bavier 97b07aaa41 gnu: Add perl-module-pluggable. 
This Perl module was moved out of Perl core in v5.19.0.

* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-20 17:45:31 -06:00
Mark H Weaver beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
 2016-01-20 13:23:42 -05:00
Andreas Enge f32ee38fcd gnu: arb: Correct patch. 
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
 2016-01-20 16:57:17 +01:00
Andreas Enge ffc8f34511 gnu: arb: Update to 2.8.1. 
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-01-20 16:33:34 +01:00
Andreas Enge 7c853c02b8 gnu: doxygen: Update to 1.8.11. 
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
  Drop one patch.
  [build-system]: Switch to cmake-build-system, since gnu-build-system
  is not supported any more.
  [arguments]: Adapt.
  [native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-01-20 13:19:48 +01:00
Mark H Weaver afe9f40949 Merge branch 'master' into core-updates 2016-01-19 00:18:37 -05:00
Mark H Weaver 8d9bae4ed7 gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558]. 
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
  [source]: Remove patch.
 2016-01-15 18:03:02 -05:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22. 
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-15 14:23:46 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
 2016-01-14 14:43:25 +01:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test. 
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-14 10:43:08 +01:00
Ludovic Courtès 8c986ab120 Merge branch 'master' into core-updates 2016-01-13 18:18:48 +01:00
Eric Bavier c91d3fb7f4 gnu: boost: Update to 1.60.0. 
* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
 2016-01-12 21:07:53 +01:00
Mark H Weaver 203795acea gnu: perl: Add fix for CVE-2015-8607. 
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
 2016-01-12 13:12:07 -05:00
Mark H Weaver 16aa649117 gnu: sudo: Add fix for CVE-2015-5602. 
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
 2016-01-12 11:23:06 -05:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-01-11 00:36:13 +10:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575]. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
 2016-01-08 15:29:50 -05:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers. 
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
 2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'. 
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
 2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0. 
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
 2016-01-07 08:42:15 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7. 
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
 2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'. 
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
 2016-01-05 13:13:17 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00