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Author SHA1 Message Date
Andy Wingo 2ae7a55062 gnu: xf86-video-vmware: Update to 13.1.0. 
* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bcd4a74039 gnu: xf86-video-trident: Update to 1.3.7. 
* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 816decebf2 gnu: xf86-video-tdfx: Update to 1.4.6. 
* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 5f59f5103a gnu: xf86-video-sis: Update to 0.10.8. 
* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch,
  gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8.
  [source]: Remove patches.
 2016-02-24 11:49:57 -05:00
Andy Wingo fc1172f787 gnu: xf86-video-siliconmotion: Update to 1.7.8. 
* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch:
  Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bfe27469b4 gnu: xf86-video-r128: Update to 6.10.1. 
* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea192db119 gnu: xf86-video-mga: Update to 1.6.4. 
* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Leo Famulari 4e58a402ff gnu: cpio: Add fix for CVE-2016-2037. 
* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio)[source]: Add patch.
 2016-02-19 18:04:15 -05:00
Mark H Weaver 3729ff4183 gnu: glibc: Add fix for CVE-2015-7547. 
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Add patch.
 2016-02-19 00:42:10 -05:00
Pjotr Prins 552f5c009e gnu: Add slurm. 
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-02-15 22:47:47 +01:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]. 
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
 2016-02-15 02:51:35 -05:00
Jan Nieuwenhuizen a747baba00 gnu: Add ocaml-findlib. 
* gnu/packages/ocaml.scm (ocaml-findlib): New variable.
* gnu/packages/patches/ocaml-findlib-make-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
 2016-02-13 09:15:55 +01:00
Mark H Weaver 3a7261bf96 gnu: gnupg: Add upstream fix for test failures on x86_64. 
Fixes <https://debbugs.gnu.org/22558>.

* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
 2016-02-12 21:02:24 -05:00
Jan Nieuwenhuizen 511539ae81 gnu: Add tclxml. 
* gnu/packages/patches/tclxml-3.2-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tclxml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 19:13:05 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes. 
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
 2016-02-11 14:59:16 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
 2016-02-10 10:41:11 -05:00
Christopher Allan Webber 6f74aecdb3 gnu: xdotools: Update to 3.20150503.1 
* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1.
* gnu/packages/patches/xdotool-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 15:39:51 -08:00
Christopher Allan Webber a05d1d82c0 gnu: Add python-pygpgme 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables.
* gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 11:30:35 -08:00
Mark H Weaver 08cb746f08 gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites. 
* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-02-06 08:48:20 -05:00
Mark H Weaver a7d8c466db gnu: icecat: Update to 38.6.0-gnu1. 
* gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1.
  [source]: Remove patches.
 2016-02-05 16:00:25 -05:00
Leo Famulari 90bcecc568 gnu: jasper: Add fixes for several security flaws. 
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-02-04 15:09:41 -05:00
Mark H Weaver 5fb205c638 gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f. 
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
 2016-02-04 00:15:21 -05:00
Federico Beffa e5045f303a gnu: Add emacs-constants. 
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-03 10:48:36 +01:00
Federico Beffa e037a09f1d gnu: Add emacs-scheme-complete. 
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2016-02-03 10:47:21 +01:00
Mark H Weaver fd9a5b0fc3 gnu: qemu: Update to 2.5.0; add fixes for security flaws. 
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
  gnu/packages/patches/qemu-CVE-2015-8558.patch,
  gnu/packages/patches/qemu-CVE-2015-8567.patch,
  gnu/packages/patches/qemu-CVE-2015-8613.patch,
  gnu/packages/patches/qemu-CVE-2015-8701.patch,
  gnu/packages/patches/qemu-CVE-2015-8743.patch,
  gnu/packages/patches/qemu-CVE-2016-1568.patch,
  gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
  new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
  [source]: Remove old patches and add new ones.
  [arguments]: Add 'disable-test-qga' phase.
  (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
 2016-02-03 00:05:22 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
 2016-02-01 23:47:35 -05:00
Eric Bavier e3f755f44c gnu: Add pinball. 
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-01-31 23:46:30 -06:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
 2016-01-31 14:36:08 +02:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs. 
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-01-28 00:34:20 -05:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Mark H Weaver 86fa2ea92f gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}. 
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
  gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
  gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
  [source]: Add patches.
 2016-01-21 00:30:15 -05:00
Eric Bavier 97b07aaa41 gnu: Add perl-module-pluggable. 
This Perl module was moved out of Perl core in v5.19.0.

* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-20 17:45:31 -06:00
Mark H Weaver beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
 2016-01-20 13:23:42 -05:00
Andreas Enge f32ee38fcd gnu: arb: Correct patch. 
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
 2016-01-20 16:57:17 +01:00
Andreas Enge ffc8f34511 gnu: arb: Update to 2.8.1. 
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-01-20 16:33:34 +01:00
Andreas Enge 7c853c02b8 gnu: doxygen: Update to 1.8.11. 
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
  Drop one patch.
  [build-system]: Switch to cmake-build-system, since gnu-build-system
  is not supported any more.
  [arguments]: Adapt.
  [native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-01-20 13:19:48 +01:00
Mark H Weaver afe9f40949 Merge branch 'master' into core-updates 2016-01-19 00:18:37 -05:00
Mark H Weaver 8d9bae4ed7 gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558]. 
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
  [source]: Remove patch.
 2016-01-15 18:03:02 -05:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22. 
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-15 14:23:46 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
 2016-01-14 14:43:25 +01:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test. 
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-14 10:43:08 +01:00
Ludovic Courtès 8c986ab120 Merge branch 'master' into core-updates 2016-01-13 18:18:48 +01:00
Eric Bavier c91d3fb7f4 gnu: boost: Update to 1.60.0. 
* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
 2016-01-12 21:07:53 +01:00
Mark H Weaver 203795acea gnu: perl: Add fix for CVE-2015-8607. 
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
 2016-01-12 13:12:07 -05:00
Mark H Weaver 16aa649117 gnu: sudo: Add fix for CVE-2015-5602. 
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
 2016-01-12 11:23:06 -05:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-01-11 00:36:13 +10:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575]. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
 2016-01-08 15:29:50 -05:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers. 
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
 2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'. 
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
 2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0. 
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
 2016-01-07 08:42:15 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7. 
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
 2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'. 
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
 2016-01-05 13:13:17 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00
Ludovic Courtès 53334dd6e9 Merge branch 'master' into core-updates 2016-01-03 14:53:03 +01:00
Ludovic Courtès 1575dcd134 gnu: grep: Skip timing-sensitive test. 
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw>.

* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
 2016-01-03 14:50:29 +01:00
Eric Bavier 209778717a gnu: Add Asymptote. 
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-02 16:04:55 -06:00
Ludovic Courtès e80d2555f5 gnu: findutils: Update to 4.6.0. 
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
 2016-01-01 01:05:06 +01:00
Leo Famulari b7e7d1b9d3 gnu: fuse: Update to 2.9.4. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
  [source]: Remove patch.
 2015-12-29 14:20:55 -05:00
Mark H Weaver 097190417f gnu: icecat: Update to 38.5.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
  gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
  [source]: Remove patches.
 2015-12-23 18:19:59 -05:00
Leo Famulari f0150f8724 gnu: grub: Add fix for CVE-2015-8730. 
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
 2015-12-21 12:33:55 -05:00
Ludovic Courtès 8309c3899a gnu: commencement: Use GMP 6.0.0a for bootstrapping. 
* gnu/packages/multiprecision.scm (gmp-6.0): New variable.
* gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated
from before e414a7d.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-18 18:38:22 +01:00
Mark H Weaver 3faf214a0b gnu: icecat: Add fixes for several security flaws. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-12-17 14:12:06 -05:00
Federico Beffa fceac88039 gnu: python-ipython: Patch 'ctypes' bug. 
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: New patch.
* gnu/packages/python.scm (python-ipython): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-15 18:05:42 +01:00
Efraim Flashner 9c1c2a7f8d gnu: bluez: Update to 5.36. 
* gnu/packages/linux.scm (bluez): Update to 5.36.
[source]: Remove patch.
* gnu/packages/patches/bluez-tests.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-12-14 11:06:20 +02:00
Ludovic Courtès 4187fe750f gnu: perl: Build deterministically, and make byproducts deterministic. 
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.

* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès 4de3507483 gnu: perl: Update to 5.22.0. 
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès e82e55e58c Merge branch 'master' into core-updates 2015-12-12 11:48:46 +01:00
Ludovic Courtès 6a4db3f361 gnu: libarchive: Fix test failure on SELinux systems. 
Reported by Jan Synáček <jan.synacek@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00522.html>.

* gnu/packages/patches/libarchive-bsdtar-test.patch: New file.
* gnu/packages/backup.scm (libarchive)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-09 23:10:10 +01:00
Mark H Weaver 821060f3f6 gnu: libxml2: Update to 2.9.3. 
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-8035.patch,
  gnu/packages/patches/libxml2-bug-737840.patch,
  gnu/packages/patches/libxml2-bug-738805.patch,
  gnu/packages/patches/libxml2-bug-746048.patch,
  gnu/packages/patches/libxml2-bug-747437.patch,
  gnu/packages/patches/libxml2-bug-751603.patch,
  gnu/packages/patches/libxml2-bug-751631.patch,
  gnu/packages/patches/libxml2-bug-754946.patch,
  gnu/packages/patches/libxml2-bug-754947.patch,
  gnu/packages/patches/libxml2-bug-755857.patch,
  gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
  gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt2.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2): Update to 2.9.3.  Remove patches.
 2015-12-07 09:54:01 -05:00
Leo Famulari 99fffa8ae0 gnu: Add python-configobj. 
* gnu/packages/python.scm (python-configobj, python2-configobj): New
  variables.
* gnu/packages/patches/python-configobj-setuptools.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-05 09:44:37 -05:00
Mark H Weaver b9fa245fcd gnu: icecat: Update to 38.4.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
  gnu/packages/patches/icecat-CVE-2015-7188.patch,
  gnu/packages/patches/icecat-CVE-2015-7189.patch,
  gnu/packages/patches/icecat-CVE-2015-7193.patch,
  gnu/packages/patches/icecat-CVE-2015-7194.patch,
  gnu/packages/patches/icecat-CVE-2015-7196.patch,
  gnu/packages/patches/icecat-CVE-2015-7197.patch,
  gnu/packages/patches/icecat-CVE-2015-7198.patch,
  gnu/packages/patches/icecat-CVE-2015-7199.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.4.0-gnu1.  Remove the
  obsolete patches.
 2015-12-04 15:52:16 -05:00
Andreas Enge e414a7dec3 gnu: gmp: Drop patch included in release 6.1.0. 
* gnu/packages/multiprecision.scm (gmp)[source]: Drop patch.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2015-12-02 20:03:51 +01:00
Federico Beffa 1bbc659fd2 gnu: python-matplotlib: Add 'TkAgg' backend and update to version '1.4.3'. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Do it.
* gnu/packages/patches/matplotlib-setupext-tk.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2015-12-02 18:21:13 +01:00
Ludovic Courtès 9820a6d4a0 gnu: python: Make 'sys.version' deterministic. 
* gnu/packages/patches/python-2-deterministic-build-info.patch,
  gnu/packages/patches/python-3-deterministic-build-info.patch: New
  files.
* gnu/packages/python.scm (python-2, python): Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès dedc832070 gnu: python-2: Honor 'SOURCE_DATE_EPOCH'. 
* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
  [arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
  procedure.
  (%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès f8e7fdc416 gnu: tcl: Produce 'tclIndex' files deterministically. 
* gnu/packages/patches/tcl-mkindex-deterministic.patch: New patch.
* gnu/packages/tcl.scm (tcl)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-29 22:59:28 +01:00
宋文武 79c8a071e7 tk: Hardcode path to TK_LIBRARY. 
Fixes <http://bugs.gnu.org/20889>.

* gnu/packages/patches/tk-find-library.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tk)[source]: Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès cb7bd0cff5 gnu: weechat: Dynamically link against libpython2.7.so. 
* gnu/packages/patches/weechat-python.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/weechat.scm (weechat)[source]: Use it.
 2015-11-29 19:17:33 +01:00
Ludovic Courtès f79a576e77 gnu: jasper: Patch CVE-2008-3522. 
* gnu/packages/patches/jasper-CVE-2008-3522.patch: New file.
* gnu/packages/image.scm (jasper)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-28 16:29:11 +01:00
David Thompson 33ae9107d8 gnu: Add tinyxml. 
* gnu/packages/xml.scm (tinyxml): New variable.
* gnu/packages/patches/tinyxml-use-stl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-25 11:44:11 -05:00
Ludovic Courtès b6094b1f0a gnu: dico: Sort entries in .a files deterministically. 
* gnu/packages/patches/dico-libtool-deterministic.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
[arguments]: Add #:make-flags.
* gnu-system.am (dist_patch_DATA): Add the patch.
 2015-11-25 11:59:54 +01:00
Ricardo Wurmus 7775a18690 gnu: Add Synfig. 
* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-20 20:23:03 +01:00
Eric Bavier 2f5b6a1f18 gnu: hwloc: Update to 1.11.1. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
  [source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 11:58:40 -06:00
Ricardo Wurmus 0297966495 gnu: guitarix: Update to 0.34.0. 
* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 18:19:30 +01:00
Ricardo Wurmus b49c5a58dc gnu: preseq: Update to 2.0. 
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
  file.
* gnu-system.am (dist_patch_DATA): Remove them.
 2015-11-20 15:22:06 +01:00
Mark H Weaver 3470fe002c gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805. 
* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
 2015-11-18 17:47:40 -05:00
Mark H Weaver b4a88dc25f gnu: libxslt: Add fix for CVE-2015-7995. 
* gnu/packages/patches/libxslt-CVE-2015-7995.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[source]: Add patch.
 2015-11-18 17:47:40 -05:00
Mark H Weaver ee6bb0cc76 gnu: libxml2: Add fixes for CVE-2015-{1819,7941,7942,8035} and other bugs. 
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-8035.patch,
  gnu/packages/patches/libxml2-bug-737840.patch,
  gnu/packages/patches/libxml2-bug-738805.patch,
  gnu/packages/patches/libxml2-bug-746048.patch,
  gnu/packages/patches/libxml2-bug-747437.patch,
  gnu/packages/patches/libxml2-bug-751603.patch,
  gnu/packages/patches/libxml2-bug-751631.patch,
  gnu/packages/patches/libxml2-bug-754946.patch,
  gnu/packages/patches/libxml2-bug-754947.patch,
  gnu/packages/patches/libxml2-bug-755857.patch,
  gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
  gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[source]: Add patches.
 2015-11-18 17:47:40 -05:00
Ricardo Wurmus 3279b7ec47 gnu: Add Scribus. 
* gnu/packages/scribus.scm: New file
* gnu/packages/patches/scribus-qobject.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES, dist_patch_DATA): Add them.
 2015-11-17 08:43:32 +01:00
David Thompson 3aab2c839f gnu: Add devil. 
* gnu/packages/image.scm (devil): New variable.
* gnu/packages/patches/devil-fix-libpng.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-16 08:47:23 -05:00
宋文武 0cc2284819 gnu: procps: Update to 3.3.11. 
procps-ng is the new upstream.

* gnu/packages/procps.scm (procps): Update to 3.3.11.
  [source]: Adjust formatting.  Remove patches.
  [home-page]: Update URL.
* gnu/packages/patches/procps-make-3.82.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-16 16:06:49 +08:00
Alex Kost 6f4b23e674 gnu: emacs: Honor 'SOURCE_DATE_EPOCH'. 
Suggested by Ludovic Courtès <ludo@gnu.org>.

* gnu/packages/patches/emacs-source-date-epoch.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
 2015-11-14 21:59:37 +03:00
Mark H Weaver ff45a00e79 gnu: mit-krb5: Add fixes for CVE-2015-{2695,2696,2697,2698}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/mit-krb5.scm (mit-krb5)[native-inputs]: Add patches.
 2015-11-13 12:42:47 -05:00
Mark H Weaver 9715df7fbe gnu: mit-krb5: Update to 1.13.2. 
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.2.
  [native-inputs]: Remove "patch/init-fix".
* gnu/packages/patches/mit-krb5-init-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-13 12:42:47 -05:00
Mark H Weaver 419630e0be gnu: wpa-supplicant: Add fixes for CVE-2015-{5310,5314,5315,5316}. 
* gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Add patches.
 2015-11-11 07:45:11 -05:00
Ludovic Courtès ba583bd2ce gnu: torsocks: Upgrade to 2.0.0. 
* gnu/packages/tor.scm (torsocks): Update to 2.0.0.
  [source]: Fetch from git.torproject.org.  Use
  'torsocks-dns-test.patch'.
  [arguments, native-inputs]: New fields.
  [license]: Change to GPL2.
* gnu/packages/patches/torsocks-dns-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-11 00:37:50 +01:00
Taylan Ulrich Bayırlı/Kammer e6974eae1d gnu: Add mupen64plus-ui-console. 
* gnu/packages/games.scm (mupen64plus-ui-console): New variable.
* gnu/packages/patches/mupen64plus-ui-console-notice.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-10 22:14:44 +01:00
Leo Famulari 0f9c1f3400 gnu: Build lua-5.2 with a dynamic library 
* gnu/packages/patches/lua52-liblua-so.patch: New file.
* gnu/packages/lua.scm (lua-5.2): Use lua52-liblua-so.patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-11-08 22:21:19 +01:00
Ludovic Courtès 9eb681a02d gnu: grep: Update to 2.22. 
* gnu/packages/base.scm (grep): Upgrade to 2.22.  Remove
  'grep-CVE-2015-1345.patch'.
* gnu/packages/patches/grep-CVE-2015-1345.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-11-07 22:01:04 +01:00
Mark H Weaver 0ca1eb705d gnu: icecat: Add several security fixes. 
* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
  gnu/packages/patches/icecat-CVE-2015-7188.patch,
  gnu/packages/patches/icecat-CVE-2015-7189.patch,
  gnu/packages/patches/icecat-CVE-2015-7193.patch,
  gnu/packages/patches/icecat-CVE-2015-7194.patch,
  gnu/packages/patches/icecat-CVE-2015-7196.patch,
  gnu/packages/patches/icecat-CVE-2015-7197.patch,
  gnu/packages/patches/icecat-CVE-2015-7198.patch,
  gnu/packages/patches/icecat-CVE-2015-7199.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-11-07 08:33:16 -05:00
Eric Bavier b95bcb8ae0 gnu: Add byobu. 
* gnu/packages/screen.scm (byobu): New variable.
* gnu/packages/patches/byobu-writable-status.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-03 17:08:41 -06:00
Efraim Flashner f133955122 gnu: gsl: Update to 2.0. 
* gnu/packages/maths.scm (gsl): Update to 2.0.
  [source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
 2015-11-02 21:04:18 +02:00
Ludovic Courtès 3c3e69728c gnu: guitarix: Compile in C++11 mode. 
* gnu/packages/patches/guitarix-c++11.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (guitarix)[source]: Use it.
  [arguments]: Add --cxxflags to #:configure-flags.
 2015-10-31 13:17:23 +01:00
宋文武 eed588d997 Merge branch 'master' into dbus-update 2015-10-30 20:50:26 +08:00
David Thompson b90e7e5d49 gnu: xfce4-session: Fix xflock4. 
* gnu/packages/patches/xfce4-session-fix-xflock4.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xfce.scm (xfce4-session)[source]: Add patch.
 2015-10-30 08:42:43 -04:00
Mark H Weaver 51de92a08e gnu: unzip: Reorganize security fixes for improved clarity. 
* gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete
  file.  Its contents are now split into the following new files:
* gnu/packages/patches/unzip-CVE-2015-7696.patch,
  gnu/packages/patches/unzip-CVE-2015-7697.patch,
  gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
 2015-10-23 23:12:06 -04:00
Mark H Weaver d3365d4866 Merge branch 'master' into dbus-update 2015-10-23 23:11:38 -04:00
Mark H Weaver 71eb843837 gnu: unzip: Reorganize security fixes for improved clarity. 
* gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete
  file.  Its contents are now split into the following new files:
* gnu/packages/patches/unzip-CVE-2015-7696.patch,
  gnu/packages/patches/unzip-CVE-2015-7697.patch,
  gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
 2015-10-23 15:35:46 -04:00
宋文武 6747de140d gnu: bluez: Update to 5.35, fix test. 
* gnu/packages/patches/bluez-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (bluez): Update to 5.35.
  [source]: Add patch.
 2015-10-23 22:23:34 +08:00
Eric Bavier c595cd47d8 gnu: evilwm: Add patch for lost-focus bug. 
* gnu/packages/patches/evilwm-lost-focus-bug.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/wm.scm (evilwm)[source]: Use it.
 2015-10-22 17:47:37 -05:00
Mark H Weaver 2442e69e41 Revert "gnu: unzip: Reorganize security fixes for improved clarity." 
This reverts commit c46c931ecf.
 2015-10-22 17:10:41 -04:00
Mark H Weaver c46c931ecf gnu: unzip: Reorganize security fixes for improved clarity. 
* gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete
  file.  Its contents are now split into the following new files:
* gnu/packages/patches/unzip-CVE-2015-7696.patch,
  gnu/packages/patches/unzip-CVE-2015-7697.patch,
  gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
 2015-10-22 14:58:03 -04:00
Ludovic Courtès da51f5bb01 gnu: dbus: Add variant with proper helper for service activation. 
* gnu/packages/patches/dbus-helper-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (dbus/activation): New variable.
 2015-10-22 00:26:11 +02:00
Mark H Weaver b2aab72c14 gnu: libdrm: Fix symbol check tests on mips64el and armhf. 
* gnu/packages/patches/libdrm-symbol-check.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (libdrm)[source]: Add patch.
 2015-10-19 00:37:53 -04:00
Mark H Weaver ccb522324b Merge branch 'master' into dbus-update 2015-10-17 19:08:53 -04:00
宋文武 5f37e56ba4 gnu: librsvg: Fix tests. 
GLib doesn't allow duplicate test case paths any more.

* gnu/packages/patches/librsvg-tests.patch: New file.
* gnu/packages/gnome.scm (librsvg)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-10-17 10:30:25 +08:00
Andreas Enge d82633d06a gnu: mutt: Update to 1.5.24. 
* gnu/packages/patches/mutt-CVE-2014-9116.patch: Delete file.
* gnu/packages/mail.scm (mutt): Update to 1.5.24.
  [source]: Update and remove patch.
* gnu-system.am (dist_patch_DATA): Unregister removed patch.
 2015-10-16 22:58:07 +02:00
宋文武 e75230c1b7 gnu: eudev: Update to 3.1.5. 
* gnu/packages/linux.scm (eudev): Update to 3.1.5.
* gnu/packages/patches/eudev-rules-directory.patch: Adapt to it.
 2015-10-16 21:13:02 +08:00
宋文武 1c255eeec9 gnu: Remove dbus-localstatedir.patch. 
This is a followup to 25087f.

* gnu/packages/patches/dbus-localstatedir.patch: Remove file.
 2015-10-14 21:42:07 +08:00
Ludovic Courtès 53b5856ac1 gnu: glib: Update to 2.46.0. 
* gnu/packages/glib.scm (glib): Update to 2.46.0.
* gnu/packages/patches/glib-tests-desktop.patch: Add hunk to disable
  'gdbus-unix-addresses' test.
 2015-10-14 14:41:26 +02:00
Ludovic Courtès bbe04ae102 gnu: dbus: Update to 1.10.0. 
* gnu/packages/glib.scm (dbus)[source]: Update to 1.10.0.
  [arguments]: Add --sysconfdir=/etc.
* gnu/packages/patches/dbus-localstatedir.patch: Update.
 2015-10-14 14:41:26 +02:00
Mark H Weaver 9f7ae77fe2 gnu: icecat: Update to 38.3.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-4473-partial.patch,
  gnu/packages/patches/icecat-CVE-2015-4482.patch,
  gnu/packages/patches/icecat-CVE-2015-4488.patch,
  gnu/packages/patches/icecat-CVE-2015-4489.patch,
  gnu/packages/patches/icecat-CVE-2015-4491.patch,
  gnu/packages/patches/icecat-CVE-2015-4492.patch,
  gnu/packages/patches/icecat-CVE-2015-4495.patch,
  gnu/packages/patches/icecat-enable-acceleration-and-webgl.patch,
  gnu/packages/patches/icecat-libvpx-1.4.patch: Delete files.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: New file.
* gnu-system.am (dist_patch_DATA): Add new patch.  Remove the deleted ones.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.3.0-gnu1.
  [source]: Add new patch.  Remove the deleted ones.
  [inputs]: Add libxcomposite.
  [arguments]: Add 'ensure-no-mtimes-pre-1980' phase.  Adapt
  'remove-h264parse-from-blacklist' and
  'arrange-to-link-libxul-with-libraries-it-might-dlopen' phases to the
  new version.
 2015-10-14 01:41:56 -04:00
Ludovic Courtès adc90e0eac Merge branch 'core-updates' 2015-10-12 21:42:06 +02:00
Ricardo Wurmus c23c50c734 gnu: Add MARS. 
* gnu/packages/games.scm (mars): New variable.
* gnu/packages/patches/mars-install.patch: New file.
* gnu/packages/patches/mars-sfml-2.3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-10-11 15:52:59 +02:00
Mark H Weaver b81378251c Merge branch 'master' into core-updates 2015-10-08 10:59:39 -04:00
Mark H Weaver b5881775ac gnu: libunwind: Add fix for CVE-2015-3239. 
* gnu/packages/patches/libunwind-CVE-2015-3239.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/libunwind.scm (libunwind)[source]: Add patch.
 2015-10-08 10:55:52 -04:00
Mark H Weaver f956d661ad gnu: libwmf: Add fixes for several security flaws. 
* gnu/packages/patches/libwmf-CAN-2004-0941.patch,
  gnu/packages/patches/libwmf-CVE-2007-0455.patch,
  gnu/packages/patches/libwmf-CVE-2007-2756.patch,
  gnu/packages/patches/libwmf-CVE-2007-3472.patch,
  gnu/packages/patches/libwmf-CVE-2007-3473.patch,
  gnu/packages/patches/libwmf-CVE-2007-3477.patch,
  gnu/packages/patches/libwmf-CVE-2009-3546.patch: New files.
* gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: Delete
  file.  Replace with ...
* gnu/packages/patches/libwmf-CVE-2015-0848+CVE-2015-4588.patch,
  gnu/packages/patches/libwmf-CVE-2015-4695.patch,
  gnu/packages/patches/libwmf-CVE-2015-4696.patch: ... these new files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image.scm (libwmf)[source]: Adjust set of patches.
 2015-10-08 10:46:30 -04:00
Mark H Weaver 48e4a9f32f gnu: unzip: Add various fixes. 
* gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch: Delete
  file.  Replace with ...
* gnu/packages/patches/unzip-overflow-long-fsize.patch: ... this new file.
* gnu/packages/patches/unzip-attribs-overflow.patch,
  gnu/packages/patches/unzip-fix-overflows-and-infloop.patch,
  gnu/packages/patches/unzip-format-secure.patch: New files.
* gnu/packages/patches/unzip-CVE-2014-9636.patch: Replace contents with
  fixed patch from Fedora.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zip.scm (unzip)[source]: Adjust list of patches.
 2015-10-08 10:07:44 -04:00
Mark H Weaver e91e28d60c gnu: wpa-supplicant: Update to 2.5. 
* gnu/packages/patches/wpa-supplicant-2015-2-fix.patch,
  gnu/packages/patches/wpa-supplicant-2015-3-fix.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch,
  gnu/packages/patches/wpa-supplicant-2015-5-fix.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.5.
  Remove patches.
 2015-10-08 09:15:30 -04:00
Mark H Weaver 319fe79dd0 Merge branch 'master' into core-updates 2015-10-07 23:55:17 -04:00
Mark H Weaver a606ed89d4 gnu: webkitgtk-2.4: Fix potential code execution vulnerability. 
* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/webkit.scm (webkitgtk-2.4)[source]: Add patch.
 2015-10-07 22:54:09 -04:00
Mark H Weaver 7ab73c4add gnu: openjpeg-2.x: Add fix for CVE-2015-6581. 
* gnu/packages/patches/openjpeg-CVE-2015-6581.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0)[source]: Add patch.
 2015-10-07 22:18:13 -04:00
Ludovic Courtès 6a20289d5a gnu: python: Simplify list of configure flags. 
* gnu/packages/patches/python-2.7-search-paths.patch,
  gnu/packages/patches/python-3-search-paths.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/python.scm (python-2)[source]: Use first patch.
  [arguments]: Remove now unneeded CPPFLAGS and LDFLAGS.
  (python)[source]: Use second patch.
  (python-minimal)[arguments]: Remove CPPFLAGS and LDFLAGS.
 2015-10-08 00:05:34 +02:00
Ludovic Courtès 42e735dfc7 gnu: gmp: Skip unreliable test. 
* gnu/packages/patches/gmp-faulty-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/multiprecision.scm (gmp)[source]: Use it.
 2015-10-06 15:18:44 +02:00
Ludovic Courtès 85e5721421 gnu: glibc: Look for locale data in versioned sub-directories. 
Suggested by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/glibc-versioned-locpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
  [arguments]: Add explicit version sub-directory to
  libc_cv_localedir.
  [native-search-paths]: Use 'GUIX_LOCPATH' instead of 'LOCPATH'.
  (glibc-locales, glibc-utf8-locales): Write to a VERSION
  sub-directory.
 2015-10-05 22:34:50 +02:00
Ludovic Courtès f211b2af67 Revert "gnu: glibc: Honor 'GUIX_LOCPATH'." 
This reverts commits fbb909ac7e
and 2ebe938c2f.
 2015-10-05 22:34:34 +02:00
Andreas Enge 14bcc1e1cd gnu: qt: Remove the sources of qtwebengine. 
* gnu/packages/qt.scm (qt)[source]: Add snippet to remove the qtwebengine
  code, which was already not built anymore, and drop one patch used
  previously only for qtwebengine.
  [arguments]: Drop the configuration flag "-skip qtwebengine", since
  deleted modules cannot be skipped.
* gnu/packages/patches/qt5-runpath.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Unregister patch.

Partially fixes <http://bugs.gnu.org/21288>.
 2015-10-04 23:04:26 +02:00
Andreas Enge 7431edea5b gnu: qt-4: Disable webkit build. 
* gnu/packages/qt.scm (qt-4)[source]: Add snippet to remove the webkit code
  and drop one patch used previously for webkit.
  [arguments]: Add configure flag to disable building the webkit module.
* gnu/packages/patches/qt4-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Unregister patch.

Partially fixes <http://bugs.gnu.org/21288>.
 2015-10-04 11:09:14 +02:00
Ludovic Courtès fbb909ac7e gnu: glibc: Honor 'GUIX_LOCPATH'. 
* gnu/packages/patches/glibc-guix-locpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Use it.
  [native-search-paths]: Use 'GUIX_LOCPATH' instead of 'LOCPATH'.
* doc/guix.texi (Application Setup): Introduce the term "foreign
  distro".  Document 'GUIX_LOCPATH'.
 2015-10-03 17:55:13 +02:00
Ludovic Courtès e393586161 gnu: coreutils: Use upstream's fix for 'tail'. 
* gnu/packages/patches/coreutils-racy-tail-test.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (coreutils)[source]: Replace this patch with
  upstream's fix for 'tail'.
 2015-10-03 14:36:11 +02:00
Ludovic Courtès 2ae71b746b gnu: glibc: Do not abort when incompatible locale data is found. 
* gnu/packages/patches/glibc-locale-incompatibility.patch: New file.
* gnu/packages/base.scm (glibc)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-10-03 14:36:07 +02:00
Andreas Enge 5768893ad1 gnu: valgrind: Enable the arm architecture during configuration. 
* gnu/packages/patches/valgrind-enable-arm.patch: New file.
* gnu/packages/valgrind.scm (valgrind)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Enable patch.
 2015-10-02 21:16:02 +02:00
Andreas Enge 2f8fee0623 gnu: valgrind: Update to 3.11.0. 
* gnu/packages/valgrind.scm (valgrind): Update to 3.11.0.
  [source]: Remove the patches
* gnu/packages/patches/valgrind-glibc-2.22.patch,
  gnu/packages/patches/valgrind-linux-libre-4.x.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Unregister the patches.
 2015-10-02 20:26:45 +02:00
Mark H Weaver 93bd4a37ee gnu: freeimage: Add fix for CVE-2015-0852. 
* gnu/packages/patches/freeimage-CVE-2015-0852.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
 2015-10-02 12:53:21 -04:00
Mark H Weaver b927058237 gnu: openjpeg-2.x: Add fix for use-after-free in opj_j2k_write_mco. 
* gnu/packages/patches/openjpeg-use-after-free-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0)[source]: Add patch.
  [home-page]: Update.
 2015-10-02 12:33:26 -04:00
Ludovic Courtès 997f86e96b gnu: pixman: Update to 0.32.8. 
* gnu/packages/xdisorg.scm (pixman): Update to 0.32.8.
* gnu/packages/patches/pixman-pointer-arithmetic.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-09-30 17:19:27 +02:00
Mark H Weaver d2a6336609 gnu: qemu: Update to 2.4.0.1. Include fix for CVE-2015-6855. 
* gnu/packages/patches/qemu-CVE-2015-3209.patch,
  gnu/packages/patches/qemu-CVE-2015-4037.patch,
  gnu/packages/patches/qemu-CVE-2015-4103.patch,
  gnu/packages/patches/qemu-CVE-2015-4104.patch,
  gnu/packages/patches/qemu-CVE-2015-4105.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch,
  gnu/packages/patches/qemu-CVE-2015-5745.patch: Delete files.
* gnu/packages/patches/qemu-CVE-2015-6855.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch and delete the old ones.
* gnu/packages/qemu.scm (qemu-headless): Update to 2.4.0.1.  Add the new patch
  and delete the old ones.
 2015-09-26 10:32:19 -04:00
Ludovic Courtès e2aace769c gnu: glibc-locales: Update to glibc 2.22. 
* gnu/packages/base.scm (glibc-locales)[arguments]: Remove
  'delete-file-recursively' call from 'build' phase.
* gnu/packages/patches/glibc-locales.patch: Adjust to glibc 2.22.
 2015-09-25 17:02:13 +02:00
Mark H Weaver bd90127ad4 Merge branch 'master' into core-updates 2015-09-22 16:38:48 -04:00
Ludovic Courtès 1def6f6b2c gnu: pixman: Work around pointer arithmetic bug. 
* gnu/packages/patches/pixman-pointer-arithmetic.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[source]: Use it.
 2015-09-21 16:01:45 +02:00
Mark H Weaver 65d54af49f gnu: icu4c: Add fixes for CVE-2014-6585 and CVE-2015-1270. 
* gnu/packages/patches/icu4c-CVE-2014-6585.patch,
  gnu/packages/patches/icu4c-CVE-2015-1270.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/icu4c.scm (icu4c)[source]: Add patches.
 2015-09-19 21:35:18 -04:00
Andreas Enge e49b339608 gnu: libmtp: Add additional MTP devices. 
* gnu/packages/patches/libmtp-devices.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/patches/libmtp-devices.patch (libmtp)[source]: Add patch.
 2015-09-19 23:38:51 +02:00
Ludovic Courtès 2ed74cea5c gnu: imagemagick: Update to 6.9.2-1. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.2-1.
  [source]: Add imagemagick-test-segv.patch.
  [inputs]: Replace LIBJPEG-8 with LIBJPEG.
 2015-09-16 17:59:16 +02:00
Mark H Weaver 1d6c8db57c gnu: valgrind: Adapt to glibc-2.22 and linux-libre-4.x. 
* gnu/packages/patches/valgrind-glibc-2.21.patch: Rename to ...
  gnu/packages/patches/valgrind-glibc-2.22.patch: ... this, and add a case for
  glibc-2.22.
* gnu/packages/patches/valgrind-linux-libre-4.x.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new file, and rename the other one.
* gnu/packages/valgrind.scm (valgrind)[source]: Add new patch.
 2015-09-15 18:21:16 -04:00
Mark H Weaver 40f4817846 gnu: util-linux: Adapt util-linux-tests.patch to version 2.27. 
This is a followup to commit 57a66c2729.

* gnu/packages/patches/util-linux-tests.patch: Adapt to util-linux 2.27.
 2015-09-15 01:41:57 -04:00
Ludovic Courtès 75710da667 Merge branch 'master' into core-updates 2015-09-13 21:28:01 +02:00
Ludovic Courtès 92d0fcb6dc gnu: cpio: Upgrade to 2.12. 
* gnu/packages/cpio.scm (cpio): Update to 2.12.
  [source]: Remove 'patches' field.
* gnu/packages/patches/cpio-CVE-2014-9112-pt1.patch,
  gnu/packages/patches/cpio-CVE-2014-9112-pt2.patch,
  gnu/packages/patches/cpio-CVE-2014-9112-pt3.patch,
  gnu/packages/patches/cpio-CVE-2014-9112-pt4.patch,
  gnu/packages/patches/cpio-CVE-2014-9112-pt5.patch,
  gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove.
 2015-09-13 21:14:23 +02:00
Ludovic Courtès 895067ff49 gnu: coreutils: Skip racy 'tail' tests. 
This works around <http://bugs.gnu.org/21460>.

* gnu/packages/patches/coreutils-racy-tail-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (coreutils): Use it.
 2015-09-11 23:16:37 +02:00
Eric Bavier c6a3635d54 gnu: perl: Fix autosplitting of 0-time source. 
* gnu/packages/patches/perl-autosplit-default-time.patch: New patch.
* gnu/packages/perl.scm (perl): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-09-10 03:40:34 -05:00
Eric Bavier 8b94dffde8 gnu: gnucash: Add Finance::Quote support. 
* gnu/packages/patches/gnucash-price-quotes-perl.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnucash.scm (gnucash)[source]: Use it.
  [inputs]: Add perl-date-manip and perl-finance-quote.
  [arguments]: Add 'wrap-programs' phase.  Move below inputs.
 2015-09-10 03:21:55 -05:00
Eric Bavier 8b45993235 gnu: Add perl-finance-quote. 
* gnu/packages/web.scm (perl-finance-quote): New variable.
* gnu/packages/patches/perl-finance-quote-unuse-mozilla-ca.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-09-10 03:21:55 -05:00
Ludovic Courtès 784d6e9115 gnu: openssl: Remove run-time dependency on Perl. 
This shrinks the closure of OpenSSL from 154 MiB to 73 MiB.

* gnu/packages/patches/openssl-c-rehash.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (openssl)[source]: Use it.
  [arguments]: Add 'remove-miscellany' phase.
* gnu/packages/certs.scm (nss-certs)[native-inputs]: Add PERL.
 2015-09-09 19:01:48 +02:00
宋文武 363ccf9fe2 gnu: xfce4-settings: Set the default icon theme to "gnome". 
Fixes <http://bugs.gnu.org/21217>.

* gnu/packages/patches/xfce4-settings-defaults.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xfce.scm (xfce4-settings)[source]: Add patch.
 2015-09-09 21:06:30 +08:00
Ludovic Courtès c5d8e688dc gnu: glibc: Patch 'openat64', which was buggy on 32-bit platforms. 
* gnu/packages/patches/glibc-o-largefile.patch: New file.
* gnu/packages/base.scm (glibc)[source]: Add it to 'patches'.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-09-08 15:53:05 +02:00
Andreas Enge 45468e3649 gnu: libtiff: Update to 4.0.5. 
* gnu/packages/patches/libtiff-CVE-2012-4564.patch,
  gnu/packages/patches/libtiff-CVE-2013-1960.patch,
  gnu/packages/patches/libtiff-CVE-2013-1961.patch,
  gnu/packages/patches/libtiff-CVE-2013-4231.patch,
  gnu/packages/patches/libtiff-CVE-2013-4232.patch,
  gnu/packages/patches/libtiff-CVE-2013-4243.patch,
  gnu/packages/patches/libtiff-CVE-2013-4244.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch,
  gnu/packages/patches/libtiff-CVE-2014-8129.patch,
  gnu/packages/patches/libtiff-CVE-2014-9330.patch,
  gnu/packages/patches/libtiff-CVE-2014-9655.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Unregister the patches.
* gnu/packages/image.scm (libtiff): Update to 4.0.5 and drop the patches.
 2015-09-05 17:58:45 +02:00
Manolis Ragkousis 21a8fe1bf5 gnu: base: Add glibc-hurd and hurd-minimal. 
* gnu/packages/base.scm (glibc/hurd, glibc/hurd-headers): New variables.
* gnu/packages/hurd.scm (hurd-minimal): New variable.
* gnu/packages/patches/glibc-hurd-extern-inline.patch: New file.
* gnu/packages/patches/libpthread-glibc-preparation.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Co-authored-by: Mark H Weaver <mhw@netris.org>
 2015-09-04 13:50:38 +02:00
Manolis Ragkousis 561840b4aa gnu: acl: Fix i686-gnu build. 
* gnu/packages/patches/acl-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-09-04 13:50:38 +02:00
Ludovic Courtès 26ecc2a780 gnu: Add missing patch for Guile-Present. 
This patch should have been added in cdd383e.

* gnu/packages/patches/guile-present-coding.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-09-02 09:50:25 +02:00
Ludovic Courtès 1a51fe2768 gnu: Add Guile-RSVG. 
* gnu/packages/gtk.scm (guile-rsvg): New variable.
* gnu/packages/patches/guile-rsvg-pkgconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-08-31 23:02:29 +02:00
Siniša Biđin 6edb5b7765 gnu: lua: Add patch to generate pkg-config file. 
* gnu/packages/patches/lua-pkgconfig.patch: New file.
* gnu/packages/lua.scm (lua)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Register patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-08-27 23:34:24 +02:00
Mark H Weaver 0058239ed3 gnu: subversion: Update to 1.8.14. 
* gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/version-control.scm (subversion): Update to 1.8.14.  Remove
  patch.
 2015-08-21 12:02:22 -04:00
Mark H Weaver 9cdce047d0 gnu: gnutls: Update to 3.4.4.1. 
* gnu/packages/patches/gnutls-doc-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls): Update to 3.4.4.1.  Add patch.
  [arguments]: Add 'delete-prebuilt-unfixed-info-file' phase.
  In 'move-doc' phase, copy man pages to the correct directory.
  [native-inputs]: Add 'texinfo'.
 2015-08-21 12:02:20 -04:00
Jeff Mickey 08cc159a70 gnu: pavucontrol: Update to 3.0. 
* gnu/packages/pulseaudio.scm (pavucontrol): Update to 3.0.
* gnu/packages/patches/pavucontrol-sigsegv.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-08-20 17:52:29 +02:00
Mark H Weaver 7cb6f648b2 gnu: qemu: Update to 2.3.1. Add fix for CVE-2015-5745. 
* gnu/packages/patches/qemu-CVE-2015-5745.patch: New file.
* gnu/packages/patches/qemu-CVE-2015-3456.patch,
  gnu/packages/patches/qemu-CVE-2015-5154-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-5154-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-5154-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-5158.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Add new file and remove the deleted ones.
* gnu/packages/qemu.scm (qemu): Update to 2.3.1.  Add new patch and remove the
  deleted ones.
 2015-08-18 23:57:25 -04:00
Mark H Weaver 7f1b865819 Revert "PRELIMINARY: gnu: Add network-manager." 
This reverts commit 0f402e4cf8.
 2015-08-18 23:56:10 -04:00
Mark H Weaver 0f402e4cf8 PRELIMINARY: gnu: Add network-manager. 
* gnu/packages/patches/network-manager-platform-managed.patch,
  gnu/packages/network-manager.scm: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add network-manager.scm.
  (dist_patch_DATA): Add network-manager-platform-managed.patch.
 2015-08-18 23:52:57 -04:00
宋文武 907f939b9b gnu: glib-networking: Prefer 'SSL_CERT_FILE' as TLS CA file. 
This is an improvement over commit af6100f.

* gnu/packages/gnome.scm (glib-networking)[source](patches): New field.
  [arguments]: Pass '/etc/ssl/certs/ca-certificates.crt' to configure.
  Set 'SSL_CERT_FILE' to '/dev/null' in 'use-empty-ssl-cert-file' phase.
  (libsoup)[arguments]: Set 'SSL_CERT_FILE' to '/dev/null' in
  'pre-check' phase.
* gnu/packages/patches/glib-networking-ssl-cert-file.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-08-14 17:58:48 -04:00
Andreas Enge 6c591c8ed7 gnu: flint: Update to 2.5.2. 
* gnu/packages/algebra.scm (flint): Update to 2.5.2.
* gnu/packages/patches/flint-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register the patch.
 2015-08-14 18:14:33 +02:00
Mark H Weaver c037a0f7ce gnu: icecat: Add fixes for CVE-2015-{4473,4482,4488,4489,4491,4492}. 
WARNING: CVE-2015-4473 may not be fully addressed here, because I was unable
to backport some of the patches (for upstream bugs 1182711 and 1146213).  I
was also unable to backport CVE-2015-4484 (upstream bug 1171540) and
CVE-2015-4487 (upstream bug 1171603).  I was unable to find any commit in the
upstream repository that claims to address bug 1105914 (CVE-2015-4478).

* gnu/packages/patches/icecat-CVE-2015-4473-partial.patch,
  gnu/packages/patches/icecat-CVE-2015-4482.patch,
  gnu/packages/patches/icecat-CVE-2015-4488.patch,
  gnu/packages/patches/icecat-CVE-2015-4489.patch,
  gnu/packages/patches/icecat-CVE-2015-4491.patch,
  gnu/packages/patches/icecat-CVE-2015-4492.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-08-12 20:37:44 -04:00
Mathieu Lirzin 8cba71c7a0 gnu: ratpoison: Update to 1.4.8. 
* gnu/packages/ratpoison.scm (ratpoison): Update to 1.4.8.
* gnu/packages/patches/ratpoison-shell.patch: Adapt to it.
 2015-08-12 15:30:04 +02:00
Mark H Weaver ae4784af54 gnu: wicd: Fix bugs in curses interface program. 
* gnu/packages/patches/wicd-bitrate-none-fix.patch,
  gnu/packages/patches/wicd-get-selected-profile-fix.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/wicd.scm (wicd)[source]: Add patches.
 2015-08-12 00:22:02 -04:00
Mark H Weaver a5e55dfbb7 gnu: icecat: Add fix for CVE-2015-4495. 
* gnu/packages/patches/icecat-CVE-2015-4495.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Move the 'patches'
  field above the snippet.
 2015-08-07 23:08:41 -04:00
Eric Dvorsak ff6f33cf80 gnu: python-2: Update to 2.7.10. 
* gnu/packages/patches/python2-sqlite-3.8.4-test-fix.patch,
  gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/python.scm (python-2): Update to 2.7.10.  Remove patches.
  Update comment showing test failures.
 2015-08-06 16:33:54 -04:00
Mark H Weaver b1a2bc895a gnu: Add pidgin. 
* gnu/packages/patches/pidgin-add-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (pidgin): New variable.
 2015-08-04 16:21:17 -04:00
Mark H Weaver d2892f3a2d gnu: icu4c: Add fix for CVE-2015-4760. 
* gnu/packages/patches/icu4c-CVE-2015-4760.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[source]: Add patch.
 2015-08-03 02:10:14 -04:00
Federico Beffa 23bae7bb86 gnu: Add fasthenry. 
* gnu/packages/engineering.scm (fasthenry): New variable.
* gnu/packages/patches/fasthenry-spAllocate.patch,
  gnu/packages/patches/fasthenry-spBuild.patch,
  gnu/packages/patches/fasthenry-spFactor.patch,
  gnu/packages/patches/fasthenry-spSolve.patch,
  gnu/packages/patches/fasthenry-spUtils.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-08-01 12:29:37 +02:00
Federico Beffa 930945015c gnu: Add fastcap. 
* gnu/packages/engineering.scm (fastcap): New variable.
  (broken-tarball-fetch): New function.  Suggested by Ludovic Courtès
  <ludo@gnu.org>.
* gnu/packages/patches/fastcap-mulGlobal.patch,
  gnu/packages/patches/fastcap-mulSetup.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-08-01 12:29:37 +02:00
Mark H Weaver 99e29da156 gnu: expat: Add fix for CVE-2015-1283. 
* gnu/packages/patches/expat-CVE-2015-1283.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (expat)[source]: Add patch.
 2015-07-30 08:21:28 -04:00
Mark H Weaver 7ef4119f0a gnu: qemu: Add fixes for CVE-2015-5154 and CVE-2015-5158. 
* gnu/packages/patches/qemu-CVE-2015-5154-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-5154-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-5154-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-5158.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
 2015-07-27 18:50:35 -04:00
Andreas Enge 44a477e1ac gnu: liblxqt: Fix build with Qt 5.5. 
* gnu/packages/patches/liblxqt-include.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/lxqt.scm (liblxqt)[source]: Use patch.
 2015-07-27 22:54:58 +02:00
Mark H Weaver 35a12b4719 gnu: ghostscript: Add fix for CVE-2015-3228. 
* gnu/packages/patches/ghostscript-CVE-2015-3228.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript)[source]: Add patch.
 2015-07-27 04:38:44 -04:00
Andreas Enge f7fb0ccb69 gnu: qt: Update to 5.5.0. 
* gnu/packages/qt.scm (qt): Update to 5.5.0. Update download location.
  Drop patch and snippet.
  [arguments]: Add configure flag to drop qtwebengine module bundling
  chromium.
  [native-inputs]: Drop ninja, needed only for qtwebengine.
  [inputs]: Add harfbuzz to avoid use of bundled copy.
  (qt-4)[inputs]: Remove inherited harfbuzz again.
* gnu/packages/patches/qt5-conflicting-typedefs.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Unregister patch.
* gnu/packages/patches/qt5-runpath.patch: Adapt patch.
 2015-07-27 09:41:16 +02:00
Andreas Enge a060ca3201 gnu: avidemux: Install libraries to lib. 
* gnu/packages/video.scm (avidemux)[source]: Add patch to install to lib
  directory instead of lib64 or lib32 depending on the architecture.
  [arguments]: Use the lib instead of the lib64 directory for flags in the
  build phase, so that these flags should now also work on i686.
* gnu/packages/patches/avidemux-install-to-lib.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
 2015-07-26 15:24:20 +02:00
Ben Woodcroft b81cb1f2f3 gnu: bedtools: Add patch to fix compilation on 32 bit systems. 
* gnu/packages/patches/bedtools-32bit-compilation.patch: New file.
* gnu/packages/bioinformatics.scm (bedtools)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Register patch.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2015-07-25 19:16:49 +02:00
Andreas Enge d0dfc06683 gnu: ripperX: Update to 2.8.0. 
* gnu/packages/mp3.scm (ripperx): Update to 2.8.0. Drop one patch and
  add another one.
* gnu/packages/patches/ripperx-libm.patch: Remove file.
* gnu/packages/patches/ripperx-missing-file.patch: New file.
* gnu-system.am (dist_patch_DATA): Register one patch and unregister the
  other.
 2015-07-24 21:16:29 +02:00
Ludovic Courtès 47e0ba8fe5 gnu: clang: Disable distro detection and remove FHS assumptions. 
* gnu/packages/patches/clang-libc-search-path.patch: Disable distro detection
  and remove hard-coded FHS file names, both of which would lead to breakage
  on non-GuixSD systems.
 2015-07-24 17:29:37 +02:00
Ludovic Courtès 7e96eb1a08 gnu: guile-static: Add 'umount' procedure. 
* gnu/packages/patches/guile-linux-syscalls.patch: Add 'umount' subr.
 2015-07-24 01:19:57 +02:00
Andreas Enge 1436c5c7e8 gnu: teckit: Update to 2.5.4. 
* gnu/packages/fontutils.scm (teckit): Update to 2.5.4. Drop patch.
  Use svn-fetch for download.
  [arguments]: Add phase to call autogen.
  [native-inputs]: New field.
* gnu/packages/patches/teckit-cstdio.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2015-07-22 19:29:17 +02:00
Ricardo Wurmus 5ff0edaee6 gnu: julia: Update to 0.3.10. 
* gnu/packages/julia.scm (julia): Update to 0.3.10.
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-21 10:33:59 +02:00
Mark H Weaver c0eac5a862 gnu: libmad: Apply fixes for ARMv7 Thumb, etc. 
* gnu/packages/patches/libmad-armv7-thumb-pt1.patch,
  gnu/packages/patches/libmad-armv7-thumb-pt2.patch,
  gnu/packages/patches/libmad-frame-length.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/mp3.scm (libmad)[source]: Add patches.
 2015-07-21 02:05:20 -04:00
Mark H Weaver 4d85391059 gnu: tidy: Add fixes for CVE-2015-5522 and CVE-2015-5523. 
* gnu/packages/patches/tidy-CVE-2015-5522+5523.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (tidy)[source]: Add patch.
 2015-07-20 23:33:41 -04:00
Mark H Weaver 1b4e48d498 Merge branch 'master' into core-updates 2015-07-19 18:12:34 -04:00
Ludovic Courtès 2e839545c7 gnu: ninja: Do not report files with mtime = 0 as missing. 
This is a followup to 47f315a.

* gnu/packages/patches/ninja-zero-mtime.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/ninja.scm (ninja)[source]: Reinstate 'patches' field and add
  this patch.
  [arguments]: Remove 'apply-ninja-tests.patch' phase.
 2015-07-18 23:27:18 +02:00
Ludovic Courtès 82700f0fb3 gnu: crda: Add forgotten patch. 
This file should have been added as part of commit cc205da.

* gnu/packages/patches/crda-optional-gcrypt.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-18 17:15:03 +02:00
Mark H Weaver 2fdc682742 gnu: icecat: Add patch to adapt to freetype 2.6. 
* gnu/packages/patches/icecat-freetype-2.6.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2015-07-17 01:42:35 -04:00
Ludovic Courtès 81e558fdb1 gnu: subversion: Skip the faulty test. 
The added patch from upstream didn't help, nor did downgrading to SQLite
3.8.9.  Thus, shamelessly skip the offending test.

* gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch: Add one hunk to skip
  the faulty test, and another one from upstream.
 2015-07-16 23:33:15 +02:00
Mark H Weaver 385ae063c9 gnu: unzip: Fix CVE-2014-9636 and some other bugs. 
* gnu/packages/patches/unzip-CVE-2014-9636.patch,
  gnu/packages/patches/unzip-allow-greater-hostver-values.patch,
  gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch,
  gnu/packages/patches/unzip-initialize-symlink-flag.patch,
  gnu/packages/patches/unzip-remove-build-date.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/zip.scm (unzip)[source]: Add patches.
  [arguments]: Use 'modify-phases'.  Remove custom 'configure' phase; pass
  additional make-flags instead.  Add custom 'build' phase that builds
  "generic_gcc" target; remove "generic_gcc" from make-flags.
 2015-07-15 23:02:27 -04:00
Mark H Weaver 368474150b Merge branch 'master' into core-updates 2015-07-15 16:11:13 -04:00
Mark H Weaver b76c415253 gnu: icecat: Update to 31.8.0-gnu1. 
* gnu/packages/patches/icecat-enable-acceleration-and-webgl.patch: New file.
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them, and add the new file.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.8.0-gnu1.  Remove the
  outdated patches and add the new one.
 2015-07-15 15:43:23 -04:00
Mark H Weaver 35995769b5 Merge branch 'master' into core-updates 2015-07-15 15:10:32 -04:00
Andreas Enge 8d662672fc gnu: boost: Patch to avoid -m32 flag on mips. 
* gnu/packages/patches/boost-mips-avoid-m32.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/boost.scm (boost): Use it.
 2015-07-13 14:53:38 -04:00
Mark H Weaver 79e09ef2fd gnu: gettext: Update to 0.19.5. 
* gnu/packages/patches/gettext-msgunfmt.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gettext.scm (gnu-gettext): Update to 0.19.5.  Remove patch.
 2015-07-10 23:47:07 -04:00
Mark H Weaver c2ba49ef8e gnu: coreutils: Update to 8.24. 
* gnu/packages/patches/coreutils-dummy-man.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/base.scm (coreutils): Update to 8.24.  Remove patch.
 2015-07-10 23:47:07 -04:00
Mark H Weaver 9fb00f383d gnu: wpa-supplicant: Fix WPS and P2P NFC NDEF record payload length validation. 
* gnu/packages/patches/wpa-supplicant-2015-5-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patch.
 2015-07-08 18:27:37 -04:00
Ricardo Wurmus 56e373ef75 gnu: Add preseq. 
* gnu/packages/bioinformatics.scm (preseq): New variable.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: New file.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-07-08 17:05:00 +02:00
Mark H Weaver 23da88f61e gnu: liba52: Build shared library. 
* gnu/packages/patches/liba52-enable-pic.patch,
  gnu/packages/patches/liba52-link-with-libm.patch,
  gnu/packages/patches/liba52-set-soname.patch,
  gnu/packages/patches/liba52-use-mtune-not-mcpu.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/video.scm (liba52)[source]: Add patches.
  [native-inputs]: Add autoconf, automake, and libtool.
  [arguments]: Add "--enable-shared" to configure-flags.
  Add 'bootstrap' phase.
 2015-07-07 10:52:04 -04:00
Mark H Weaver 48cfe294b0 gnu: icecat: Apply more libvpx-1.4 fixes. 
This is a followup to commit c803ffcb3a.

* gnu/packages/patches/icecat-libvpx-1.4.patch: Augment existing patch to
  include fixes for content/media/encoder/VP8TrackEncoder.cpp.
 2015-07-07 02:59:59 -04:00
Mark H Weaver c803ffcb3a gnu: icecat: Fix build against libvpx 1.4. 
* gnu/packages/patches/icecat-libvpx-1.4.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2015-07-06 23:01:56 -04:00
Mark H Weaver 723e886656 gnu: libvpx: Update to 1.4.0. 
* gnu/packages/patches/libvpx-fix-armhf-link.patch,
  gnu/packages/patches/libvpx-fix-ssse3-quantize.patch,
  gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/video.scm (libvpx): Update to 1.4.0.  Remove patches.  Update
  source URI.
 2015-07-06 21:17:05 -04:00
Mark H Weaver 9ed5486439 gnu: libwmf: Fix CVE-2006-3376, CVE-2009-1364, CVE-2015-{0848,4588,4695,4696}. 
* gnu/packages/patches/libwmf-CVE-2006-3376.patch,
  gnu/packages/patches/libwmf-CVE-2009-1364.patch,
  gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libwmf)[source]: Add patches.
 2015-07-06 20:04:50 -04:00
Mark H Weaver 4463c0d216 gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}. 
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-07-04 05:44:10 -04:00
Ludovic Courtès b5b08878b6 gnu: mutt: Don't retain reference to GCC. 
* gnu/packages/patches/mutt-store-references.patch: New file.
* gnu/packages/mail.scm (mutt)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-03 15:28:06 +02:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier ce7d9c989d gnu: hwloc: Upgrade to 1.10.1. 
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
  [source]: Use patch.
  [propagated-inputs]: Remove libpci.
  [inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-06-29 15:34:36 -05:00
Ricardo Wurmus 74e03fccd3 gnu: r: Update to 3.2.1. 
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 16:13:28 +02:00
Ricardo Wurmus cc6ed47737 gnu: Add plink. 
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
 2015-06-29 12:54:48 +02:00
Mark H Weaver bf76d98789 Merge branch 'master' into core-updates 2015-06-21 14:30:22 -04:00
Mark H Weaver 180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Mark H Weaver 9a6953d28a gnu: mdadm: Add compilation fix for gcc-4.9. 
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (mdadm): Add patch.
 2015-06-19 22:42:12 -04:00
Ludovic Courtès fd6ae1b983 gnu: clang: Allow 'clang' to link executables. 
* gnu/packages/patches/clang-libc-search-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/llvm.scm (clang-from-llvm)[source]: Use it.
  [inputs]: Add "gcc-lib".
  [arguments]. Add -DGCC_INSTALL_PREFIX and -DC_INCLUDE_DIRS to
  #:configure-flags.  Add #:phases argument.
 2015-06-19 17:23:48 +02:00
David Thompson 5fd77f3f43 gnu: Make 'mount' interface in static Guile consistent with Guix API. 
Rather than expecting a pointer, the version of 'mount' in
guile-static-stripped now takes a string for the 'options' argument, just like
the 'mount' procedure in (guix build syscalls).

* gnu/packages/patches/guile-linux-syscalls.patch (mount): Expect a string or
  #f for 'options' argument.
* gnu/build/file-systems.scm (mount-file-system): Use new 'mount' interface.
 2015-06-19 07:49:18 -04:00
Mark H Weaver 9ae1e92071 gnu: cpio: Fix symlink-bad-length test. 
* gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio): Add patch.
 2015-06-17 23:19:02 -04:00
Mark H Weaver 8e28d22c91 gnu: libtiff: Add fixes for several CVEs. 
* gnu/packages/patches/libtiff-CVE-2012-4564.patch,
  gnu/packages/patches/libtiff-CVE-2013-1960.patch,
  gnu/packages/patches/libtiff-CVE-2013-1961.patch,
  gnu/packages/patches/libtiff-CVE-2013-4231.patch,
  gnu/packages/patches/libtiff-CVE-2013-4232.patch,
  gnu/packages/patches/libtiff-CVE-2013-4243.patch,
  gnu/packages/patches/libtiff-CVE-2013-4244.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8127-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt1.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt2.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt3.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt4.patch,
  gnu/packages/patches/libtiff-CVE-2014-8128-pt5.patch,
  gnu/packages/patches/libtiff-CVE-2014-8129.patch,
  gnu/packages/patches/libtiff-CVE-2014-9330.patch,
  gnu/packages/patches/libtiff-CVE-2014-9655.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[source]: Add patches.
 2015-06-16 01:02:01 -04:00
Mark H Weaver 7d02724b7b Merge branch 'master' into core-updates 2015-06-16 01:01:54 -04:00
Mark H Weaver fef3cfaaab gnu: qemu: Add fixes for CVE-2015-{4037,4103,4104,4105,4106}. 
* gnu/packages/patches/qemu-CVE-2015-4037.patch,
  gnu/packages/patches/qemu-CVE-2015-4103.patch,
  gnu/packages/patches/qemu-CVE-2015-4104.patch,
  gnu/packages/patches/qemu-CVE-2015-4105.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt1.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt2.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt3.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt4.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt5.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt6.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt7.patch,
  gnu/packages/patches/qemu-CVE-2015-4106-pt8.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
 2015-06-16 00:29:28 -04:00
Ludovic Courtès d3b4c1358c gnu: tar: Skip tests that rely on undefined unlinkat(2) behavior. 
Fixes <http://bugs.gnu.org/20597>.
Reported by Andrew Patterson <ajpatter@uwaterloo.ca>.

* gnu/packages/patches/tar-skip-unreliable-tests.patch: New file.
* gnu/packages/base.scm (tar)[source](patches): Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-16 00:27:27 +02:00
Ludovic Courtès 25cc3fe703 gnu: gettext: Fix non-deterministic msgunfmt behavior. 
Suggested by Alírio Eyng <alirioeyng@gmail.com>.

* gnu/packages/patches/gettext-msgunfmt.patch: New file.
* gnu/packages/gettext.scm (gnu-gettext)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-15 23:34:01 +02:00
Mark H Weaver bcf2971f6e Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/commencement.scm
	gnu/packages/xml.scm
 2015-06-14 08:49:42 -04:00
Mark H Weaver 0ad8f76f7f gnu: perl-net-ssleay: Disable test that fails with openssl-1.0.2b. 
* gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
 2015-06-13 23:01:07 -04:00
Mark H Weaver 4c50e5ab3a gnu: python: Disable ssl test that fails with openssl-1.0.2b. 
* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
 2015-06-13 23:01:07 -04:00
Eric Bavier 0061079a19 gnu: Add hydra. 
* gnu/packages/ci.scm: New file.
* gnu/packages/patches/hydra-automake-1.15.patch,
  gnu/packages/patches/hydra-disable-darcs-test.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add file.
  (dist_patch_DATA): Add patches.
 2015-06-13 08:05:01 -05:00
Manolis Ragkousis 16cae799db gnu: patch: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/patch-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-12 15:46:25 +03:00
Mark H Weaver 1492801655 Merge branch 'master' into core-updates 2015-06-10 17:50:27 -04:00
Mark H Weaver 3dbb0e5f8b gnu: qemu: Add fix for CVE-2015-3209. 
* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
 2015-06-10 15:42:16 -04:00
Ludovic Courtès e58652502b gnu: make-bootstrap: Adjust gawk patch to 4.1.3. 
* gnu/packages/patches/gawk-shell.patch: Update for gawk 4.1.3.
 2015-06-09 22:32:15 +02:00
Manolis Ragkousis 30347caae7 gnu: guile-static: Use Linux syscalls only on Linux-based systems. 
* gnu/packages/patches/guile-linux-syscalls.patch: Use Linux
  syscalls only on Linux-based systems.
 2015-06-09 22:48:10 +03:00
Manolis Ragkousis 56eba3d152 gnu: sed: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/sed-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-08 22:26:28 +03:00
Mark H Weaver 716e20a2bc gnu: icecat: Update to 31.7.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1.  Remove patches.
 2015-06-06 08:02:45 -04:00
Ludovic Courtès 67dfa1986d gnu: findutils: Use /var as the localstatedir, for 'updatedb'. 
* gnu/packages/patches/findutils-localstatedir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (findutils)[source]: Use it.
  [arguments]: Pass --localstatedir=/var.
 2015-06-04 12:49:43 +02:00
Ludovic Courtès 2068559ba0 gnu: gcc: Move patch upstream status in the patch itself. 
* gnu/packages/patches/gcc-arm-link-spec-fix.patch: Add bug and patch URLs.
* gnu/packages/gcc.scm (gcc-4.8): Remove them.
 2015-06-04 09:30:20 +02:00
宋文武 e7e8ea069e gnu: webkitgtk-2.4: Update to 2.8.9, build with gtk3. 
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.8.9, build with gtk3.
  Move flex and which to 'native-inputs'.  Remove #:configure-flags.
  (webkitgtk/gtk+-2): New variable.
* gnu/packages/gnucash.scm (gnucash): Use webkitgtk/gtk+-2.
* gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.

Co-authored-by: Feng Shu <tumashu@163.com>
 2015-05-29 16:05:49 +08:00
Mark H Weaver 77af7b2407 gnu: maxima: Update to 5.36.1. 
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1.  Add patch.
 2015-05-26 10:23:38 -04:00
Manolis Ragkousis 94d915d0b0 gnu: base: Fix a bug that occurs in non-Linux systems. 
* gnu/packages/base.scm (tar): Apply patch.
* gnu/packages/patches/tar-d_ino_in_dirent-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-05-23 22:24:25 +03:00
Mark H Weaver 936715c9f4 gnu: gnutls: Update to 3.4.1. 
* gnu/packages/patches/gnutls-fix-duplicate-manpages.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnutls.scm (gnutls): Update to 3.4.1.  Remove patch.
 2015-05-22 23:00:30 -04:00
Ricardo Wurmus 66e3eff1e3 gnu: Add rsem. 
* gnu/packages/bioinformatics.scm (rsem): New variable.
* gnu/packages/patches/rsem-makefile.patch: New file.
 2015-05-22 13:14:29 +02:00
Mark H Weaver 4de02f36ac gnu: fuse: Add fix for CVE-2015-3202. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (fuse): Add patch.
 2015-05-22 00:10:43 -04:00
Ricardo Wurmus 9099e88182 gnu: r: Apply patch to fix linking against R. 
* gnu/packages/patches/r-fix-15899.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r)[source]: Use it.
 2015-05-21 11:54:46 +02:00
Mark H Weaver 3a6fb858ad gnu: bitlbee: Update to 3.4. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.  Add patch.
  [inputs]: Remove 'zlib'.
 2015-05-20 16:07:09 -04:00
Mark H Weaver f6708fcdb2 gnu: qemu: Update to 2.3.0; add fix for CVE-2015-3456. 
* gnu/packages/patches/qemu-CVE-2015-3456.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu-headless): Update to 2.3.0.  Add patch.
 2015-05-14 19:36:19 -04:00
Mark H Weaver e1820d1443 gnu: icecat: Apply fixes for CVE-2015-{0797,2708,2710,2713,2716}. 
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat): Add patches.
 2015-05-13 01:32:28 -04:00
Ludovic Courtès 083b54b7c7 gnu: inetutils: Update to 1.9.3. 
* gnu/packages/patches/inetutils-syslogd.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (inetutils): Bump to 1.9.3.
  [source]: Remove patch.
  [native-inputs]: Remove.
 2015-05-12 21:22:52 +02:00
Mark H Weaver d48c8e7b60 gnu: wpa-supplicant: Add security fixes. 
* gnu/packages/patches/wpa-supplicant-2015-2-fix.patch,
  gnu/packages/patches/wpa-supplicant-2015-3-fix.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt1.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt2.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt3.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt4.patch,
  gnu/packages/patches/wpa-supplicant-2015-4-fix-pt5.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patches.
 2015-05-11 12:51:47 -04:00
Alex Kost 6633f86b49 gnu: Add tvtime. 
* gnu/packages/tv.scm,
  gnu/packages/patches/tvtime-gcc41.patch,
  gnu/packages/patches/tvtime-pngoutput.patch,
  gnu/packages/patches/tvtime-videodev2.patch,
  gnu/packages/patches/tvtime-xmltv.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add package.
  (dist_patch_DATA): Add patches.
 2015-05-10 18:30:54 +03:00
Cyril Roelandt 8fda1b7970 Remove leftover patches. 
* gnu/packages/patches/guix-test-networking.patch: Delete it.
* gnu/packages/patches/libtool-skip-tests.patch: Delete it.
* gnu/packages/patches/python-sqlite-3.8.4-test-fix.patch: Delete it.
* gnu/packages/patches/udev-gir-libtool.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove them as well.
 2015-05-10 02:10:07 +02:00
Ludovic Courtès 6f05630ba6 gnu: wicd: Add patch to fix template instantiation. 
* gnu/packages/patches/wicd-template-instantiation.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/wicd.scm (wicd)[source]: Use it.
 2015-05-09 23:53:36 +02:00
Mark H Weaver cbf71ea25e gnu: subversion: Add fix for sqlite-3.8.9. 
* gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (subversion): Add patch.
 2015-05-08 20:33:20 -04:00
Mark H Weaver aa2e989e1e gnu: linux-libre: Update to 4.0.2. 
* gnu/packages/patches/linux-libre-libreboot-fix.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.0.2.  Remove patch.
 2015-05-07 18:41:32 -04:00
Ricardo Wurmus 7b05ba9161 gnu: Add WebkitGTK 2.4.8. 
* gnu/packages/webkit.scm (webkitgtk-2.4): New variable.
* gnu/packages/patches/webkitgtk-2.4.8-gmutexlocker.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-05-07 20:17:42 +02:00
Mark H Weaver 88b6b125ba gnu: serf: Apply upstream fixes. 
* gnu/packages/patches/serf-comment-style-fix.patch,
  gnu/packages/patches/serf-deflate-buckets-test-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/web.scm (serf): Add patches.  Remove 'remove-non-c89-comment'
  phase.
 2015-05-07 12:22:09 -04:00
Eric Bavier 76071c70fc gnu: hop: Remove use of patchelf. 
* gnu/packages/patches/hop-linker-flags.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (source)[patches]: Use it.
  (arguments)[phases]: Remove patch-rpath phase.
  [modules, imported-modules]: Remove.
  (native-inputs): Remove field.
 2015-05-06 10:31:02 -05:00
Eric Bavier 401f9a8b15 gnu: fltk: Fix undefined symbol errors for shared libraries. 
* gnu/packages/patches/fltk-shared-lib-defines.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/fltk.scm (source)[patches]: New field.
 2015-05-05 00:52:53 -05:00
Mark H Weaver 80e2072a75 gnu: curl: Update to 7.42.1. 
* gnu/packages/patches/curl-support-capath-on-gnutls-conf.patch,
  gnu/packages/patches/curl-support-capath-on-gnutls.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/curl.scm (curl): Update to 7.42.1.  Remove patches.
 2015-05-04 12:37:30 -04:00
Ludovic Courtès 167a05aabc gnu: gcc-5.1: Add specific libvtv patch. 
* gnu/packages/patches/gcc-5.0-libvtv-runpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5.1)[source]: Use it.
 2015-05-04 00:24:21 +02:00
Ludovic Courtès bf4af30bb2 Merge branch 'master' into core-updates 2015-05-01 15:03:30 +02:00
Taylan Ulrich Bayırlı/Kammer 9e63a388d9 gnu: qt: Add patch for i686 build problem. 
See <https://bugreports.qt.io/browse/QTBUG-45205>.

* gnu/packages/patches/qt5-conflicting-typedefs.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qt): Add the patch.
 2015-05-01 01:05:50 +02:00
Ludovic Courtès 7e35b9dd3d gnu: gcc: Add $libdir to the RUNPATH of libvtv.so. 
* gnu/packages/gcc.scm (gcc-4.9): Inherit from GCC-4.8.
  [source]: Add 'gcc-libvtv-runpath.patch'.
  (gcc-5.1): Inherit from GCC-4.9.
  [source]: Use patches from GCC-4.9.
* gnu/packages/patches/gcc-libvtv-runpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-04-30 13:31:59 +02:00
宋文武 27c4f0cc03 gnu: Remove gstreamer-0.10 and gst-plugins-base-0.10. 
* gnu/packages/gstreamer.scm (gstreamer-0.10, gst-plugins-base-0.10):
  Remove variables.
* gnu/packages/patches/gstreamer-0.10-bison3.patch,
  gnu/packages/patches/gstreamer-0.10-silly-test.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2015-04-29 16:19:52 +08:00
宋文武 477a752e89 gnu: cmake: Update to 3.2.2. 
* gnu/packages/cmake.scm (cmake): Update to 3.2.2.
* gnu/packages/patches/cmake-fix-tests.patch: Skip test for BundleUtilities.
 2015-04-28 15:45:54 +08:00
Andreas Enge 4ac0d6444d Merge branch 'master' into core-updates. 2015-04-26 20:08:49 +02:00
Andreas Enge 003e8d5e04 Merge branch 'wip-glib' into master. 
Conflicts:
	gnu/packages/package-management.scm
 2015-04-26 16:05:39 +02:00
David Thompson 378b01dc09 gnu: Add gitolite. 
* gnu/packages/version-control.scm (gitolite): New variable.
* gnu/packages/patches/gitolite-openssh-6.8-compat.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-04-24 10:04:08 -04:00
Mark H Weaver 23d00fb0ed gnu: wpa-supplicant: Add fix for CVE-2015-1863. 
* gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant): Add patch.
 2015-04-23 20:32:35 -04:00
Eric Bavier cc8ddcb097 gnu: perl: Fix Module::Pluggable for symlink forests. 
* gnu/packages/patches/perl-module-pluggable-search.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
 2015-04-22 14:38:14 -05:00
宋文武 cc84b08c78 gnu: gobject-introspection: Update to 1.44.0. 
* gnu/packages/glib.scm (gobject-introspection): Update to 1.44.0.
  [source]: Use mirror://gnome.
  [arguments]<#:phases>: Remove.
* gnu/packages/patches/gobject-introspection-cc.patch: Rewrite to
  set os.environ['CC'] in 'giscanner/__init__.py'.
 2015-04-22 09:57:51 +08:00
宋文武 b837e658bd gnu: python-pycairo: Fix build with with python-3.4.3. 
* gnu/packages/patches/pycairo-wscript.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (python-pycairo)[source]: Use it.
  [build-system]: Use waf-build-system.
  [native-inputs]: Add python-waf.
  [arguments]<#:phases>: Use 'modify-phases'.  Add 'patch-waf phase.
* gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
 2015-04-22 09:57:51 +08:00
宋文武 f210f057a7 gnu: python-pycairo: Fix build with with python-3.4.3. 
* gnu/packages/patches/pycairo-wscript.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (python-pycairo)[source]: Use it.
  [build-system]: Use waf-build-system.
  [native-inputs]: Add python-waf.
  [arguments]<#:phases>: Use 'modify-phases'.  Add 'patch-waf phase.
* gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
 2015-04-22 09:53:34 +08:00
Eric Bavier 38e62c81ee gnu: Add Perl Net-Amazon-S3. 
* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-net-amazon-s3): New variable.
 2015-04-19 19:48:51 -05:00
Mark H Weaver 933204e5b1 Merge branch 'master' into core-updates 
Conflicts:
	gnu-system.am
	gnu/packages/gstreamer.scm
 2015-04-17 09:54:11 -04:00
Ludovic Courtès d29843466a gnu: qt-4: Do not set $LDFLAGS since that triggerred a build failure. 
Fixes the build failure at <http://hydra.gnu.org/build/379884/log/raw>:

  g++ -licui18n -Wl,-O1 [...] -o ../../../../bin/assistant [...]
  ld: warning: libQtCLucene.so.4, needed by /tmp/nix-build-qt-4.8.6.drv-0/qt-everywhere-opensource-src-4.8.6/lib/libQtHelp.so, not found (try using -rpath or -rpath-link)
  /tmp/nix-build-qt-4.8.6.drv-0/qt-everywhere-opensource-src-4.8.6/lib/libQtHelp.so: undefined reference to `QCLucenePhraseQuery::getTerms() const'
  [...]

* gnu/packages/patches/qt4-ldflags.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qt-4)[source]: Use it.
  [arguments]: Remove 'setenv' call in 'configure' phase.
 2015-04-15 18:13:56 +02:00
Ludovic Courtès 9349655820 gnu: qt-5: Allow the use of DT_RUNPATH for libQt5WebEngineCore.so. 
* gnu/packages/patches/qt5-runpath.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qt)[source]: Use it.
 2015-04-14 13:27:38 +02:00
Mark H Weaver 46a1130207 gnu: linux-libre: Remove linux-libre-vblank-fix.patch. 
* gnu/packages/patches/linux-libre-vblank-fix.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Remove patch.
 2015-04-14 02:35:38 -04:00
Ludovic Courtès 1bef37ee2e gnu: emacs: Do not keep references to the entries of the build-time $PATH. 
This reduces the number of references of the output from 54 to 31,
removing references notably to gcc, expat, glib:bin, ld-wrapper-0,
texinfo, pkg-config, make, gawk, binutils, etc.

Reported by David Thompson.

* gnu/packages/patches/emacs-exec-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
 2015-04-13 23:20:07 +02:00