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Author SHA1 Message Date
Leo Famulari 0bd1097c50
gnu: libtiff: Update to 4.0.7. 
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
[native-inputs]: Add gcc-5.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-11-23 22:53:43 -05:00
Leo Famulari 2ac7d54616
Merge branch 'master' into staging 2016-11-23 22:24:52 -05:00
Leo Famulari c0bb7178be
gnu: libtiff: Update to 4.0.7. 
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-11-23 00:17:12 -05:00
Ludovic Courtès 01f94cca19
gnu: Add 'lvm2-static'. 
* gnu/packages/patches/lvm2-static-link.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (lvm2)[source](patches): New field.
(lvm2-static): New variable.
 2016-11-22 22:59:31 +01:00
Leo Famulari be72eb98fa
gnu: libtiff: Update replacement to 4.0.7. 
* gnu/packages/image.scm (libtiff)[replacement]: Update to 4.0.7.
(libtiff-4.0.7): New variable. Update home-page and source URLs.
(libtiff/fixed): Delete variable.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch,
gnu/packages/patches/libtiff-CVE-2016-9273.patch,
gnu/packages/patches/libtiff-CVE-2016-9297.patch,
gnu/packages/patches/libtiff-CVE-2016-9448.patch,
gnu/packages/patches/libtiff-uint32-overflow.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-11-22 12:30:36 -05:00
Leo Famulari dc6d1b9609
gnu: libtiff: Fix URL in 'libtiff-uint32-overflow.patch'. 
* gnu/packages/patches/libtiff-uint32-overflow.patch: Fix URL.
 2016-11-21 11:16:37 -05:00
Julien Lepiller 1845c2a436
gnu: Add php. 
* gnu/packages/php.scm: New file.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch: New file.
* gnu/packages/patches/gd-fix-truecolor-format-correction.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add php.
(dist_patch_DATA): Add gd patches.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-20 17:54:14 +01:00
Ben J Woodcroft 66b1bac355
gnu: ruby: Update to 2.3.2. 
* gnu/packages/ruby.scm (ruby): Update to 2.3.2.
[replacement]: Remove field.
[origin]: Remove patch.
* gnu/packages/patches/ruby-symlinkfix.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-20 15:50:10 +10:00
Leo Famulari 2fedcd1895
gnu: libtiff: Fix CVE-2016-9448. 
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-19 11:31:00 -05:00
Ludovic Courtès 8134dc1f74
gnu: guile@2.0.13: Fix non-determinism issue in REPL server test. 
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
 2016-11-18 18:28:02 +01:00
Eric Bavier fe047e1380
gnu: Add Handbrake. 
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-16 20:58:12 -06:00
Leo Famulari 1339a8ed1c
gnu: libtiff: Fix some buffer overflows. 
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-16 19:59:28 -05:00
Leo Famulari 7cea56e2ac
gnu: libtiff: Fix CVE-2016-9297. 
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-16 19:59:24 -05:00
Mark H Weaver 1a87aa7567
gnu: icecat: Add fixes from Firefox ESR 45.5.0. 
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.

* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0.  Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-16 13:04:02 -05:00
Mark H Weaver 56ac2bf442
gnu: pixman: Add fix for CVE-2016-5296. 
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
 2016-11-16 13:03:56 -05:00
Hartmut Goebel 15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes. 
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-11-15 17:37:48 +01:00
Leo Famulari d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524. 
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
 2016-11-13 17:01:01 -05:00
Ludovic Courtès 142530178d
gnu: mailutils: Update to 3.0. 
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-11-13 21:12:32 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Leo Famulari 5c66314bd9
gnu: libtiff: Fix CVE-2016-9273. 
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
 2016-11-12 11:05:19 -05:00
Ben Woodcroft e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a. 
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions.  Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-11 22:15:37 +10:00
Ludovic Courtès 8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings. 
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
 2016-11-09 21:24:44 +01:00
Leo Famulari 0b34b58688
gnu: libxslt: Fix CVE-2016-4738. 
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
 2016-11-09 10:19:49 -05:00
Leo Famulari 667e777b4e
gnu: mupdf: Fix CVE-2016-{7504,7505,7506,7563,7564,9017,9136} in bundled mujs. 
* gnu/packages/patches/mupdf-CVE-2016-7504.patch,
gnu/packages/patches/mupdf-CVE-2016-7505.patch
gnu/packages/patches/mupdf-CVE-2016-7506.patch
gnu/packages/patches/mupdf-CVE-2016-7563.patch
gnu/packages/patches/mupdf-CVE-2016-7564.patch
gnu/packages/patches/mupdf-CVE-2016-9017.patch
gnu/packages/patches/mupdf-CVE-2016-9136.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2016-11-08 11:03:14 -05:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
Leo Famulari 14ac8e4865
gnu: jansson: Update to 2.9. 
* gnu/packages/web.scm (jansson): Update to 2.9.
[source]: Remove 'jansson-CVE-2016-4425.patch'.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-06 19:50:30 -05:00
Marius Bakke 6dbf1fec0d
gnu: lua: Update to 5.3.3. 
* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.
 2016-11-06 16:17:16 +00:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Leo Famulari 2d125a9b21
gnu: weex: Update to 2.8.2 [fixes CVE-2005-3150]. 
* gnu/packages/ftp.scm (weex): Update to 2.8.2.
[source]: Use new URL. Remove obsolete 'weex-vacopy.patch'.
[arguments]: Remove custom 'configure' phase and add 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and gnu-gettext.
* gnu/packages/patches/weex-vacopy.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-05 13:31:44 -04:00
Kei Kebreau 674a0f9558
gnu: w3m: Switch to Debian's actively maintained fork of w3m. 
Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3>

* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-11-04 20:06:03 -04:00
Ricardo Wurmus accd5f996e
gnu: python-ipython: Update to 4.0.0. 
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-04 21:23:07 +01:00
Leo Famulari 8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function. 
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
 2016-11-04 01:44:42 -04:00
Kei Kebreau b81245ccb3
[PATCH] gnu: Add libjxr. 
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
 2016-11-03 13:43:23 -04:00
Leo Famulari b3cc0dce08
Merge branch 'master' into core-updates 2016-11-02 20:03:35 -04:00
Marius Bakke bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}]. 
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-01 14:02:01 -04:00
Leo Famulari 40330e555f
gnu: icecat: Fix build with binutils >= 2.26. 
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
 2016-10-31 20:59:40 -04:00
Leo Famulari 205f0107bb
Merge branch 'master' into core-updates 2016-10-30 19:19:21 -04:00
Leo Famulari b89cbf5832
gnu: libtiff: Fix CVE-2016-5652. 
* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-fixed)[source]: Use it.
 2016-10-30 19:07:49 -04:00
Leo Famulari 062c7e43ed
Merge branch 'master' into core-updates 2016-10-29 21:44:44 -04:00
Theodoros Foradis 5b83b7b854
gnu: Add openocd. 
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
 2016-10-30 02:34:26 +01:00
Leo Famulari a6447e7fb6
Merge branch 'master' into core-updates 2016-10-28 13:40:17 -04:00
Leo Famulari 95bff4f697
gnu: libwebp: Fix CVE-2016-9085. 
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libwebp)[source]: Use it.
 2016-10-28 13:39:37 -04:00
Efraim Flashner aa6c09ed71
gnu: python-parse: Fix failing test. 
* gnu/packages/python.scm (python-parse)[origin]: Add patch.
* gnu/packages/patches/python-parse-too-many-fields.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-10-27 23:28:07 +03:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Leo Famulari a19da40630
gnu: perl-www-curl: Fix build failure. 
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
 2016-10-26 18:44:16 -04:00
Marius Bakke 39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a. 
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.

This is a follow-up to 47a04fca99.

* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
 2016-10-26 15:03:42 +01:00
Marius Bakke d2a9b531fb
gnu: notmuch: Update to 0.23.1. 
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
 2016-10-26 10:45:49 +01:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674. 
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
 2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries. 
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-25 14:56:37 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-24 22:53:18 -04:00
Mark H Weaver f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS. 
* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
 2016-10-24 22:28:32 -04:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:05:20 +02:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859. 
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
 2016-10-23 18:08:17 -04:00
Mark H Weaver ca0635b4ba
Merge branch 'master' into core-updates 2016-10-23 14:16:39 -04:00
Efraim Flashner eccd1d24c9
gnu: hop: Update to 2.5.1. 
* gnu/packages/scheme.scm (hop): Update to 2.5.1.
[source]: Remove patch.
* gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-23 14:37:28 +03:00
Mark H Weaver a861665b75
gnu: linux-libre@4.1: Add fix for CVE-2016-5195. 
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-4.1): Add patch.
 2016-10-22 00:30:38 -04:00
Christopher Allan Webber 7d2ee59b4a
gnu: slim: Fix line numbers in slim-login.patch. 
This was causing build failures.

* gnu/packages/patches/slim-login.patch: Fix line numbers.
 2016-10-21 12:51:33 -05:00
Eric Bavier 17d50dfdbb
gnu: slim: Display login message. 
* gnu/packages/patches/slim-login.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
 2016-10-20 16:47:20 -05:00
Eric Bavier 0b71c15c80
gnu: slim: Do not reset session after failed login. 
* gnu/packages/patches/slim-reset.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
 2016-10-20 16:47:19 -05:00
Leo Famulari c645cef7da
gnu: openssh: Fix CVE-2016-8858. 
* gnu/packages/patches/openssh-memory-exhaustion.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2016-10-19 18:02:39 -04:00
Leo Famulari 7ffa5d4a2d
gnu: python-file: Work around "double encoding" bug in file@5.28. 
* gnu/packages/patches/python-file-double-encoding-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-file)[source]: Use it.
(python2-file)[source]: Use the source of FILE directly, without the
patch.
 2016-10-19 14:36:51 -04:00
Tobias Geerinckx-Rice 5e270e8e8f
gnu: lftp: Update to 4.7.3. 
* gnu/packages/ftp.scm (lftp): Update to 4.7.3.
[source]: Use HTTPS. Remove patch.
[arguments]: Add ‘disable-impure-tests’ phase. Add #:configure-flags with
explicit location of readline headers.
[home-page]: Use HTTPS.
* gnu/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-19 19:34:17 +02:00
Marius Bakke 6cf27c89a5
gnu: notmuch: Enable tests. 
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mail.scm (notmuch)[source]: Use patch.
[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to
fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch
test shebangs and set environment.
[native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach,
gnupg, man, perl and which.
 2016-10-19 17:00:37 +01:00
Mark H Weaver d2478b4cdd
Merge branch 'master' into core-updates 2016-10-19 10:54:36 -04:00
Christopher Allan Webber 3d1fe340db
gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch. 
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
 2016-10-18 20:35:01 -05:00
Stephen Webber a56145e1fa
gnu: Add kobodeluxe. 
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-18 20:23:03 -05:00
ng0 91988aee12
gnu: torsocks: Update to 2.2.0. 
* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-18 23:45:06 +01:00
Efraim Flashner b333d00c35
gnu: jasper: Update to 1.900.5. 
* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-17 23:51:38 +03:00
Mark H Weaver dcaf70897a
Merge branch 'master' into core-updates 2016-10-17 16:47:12 -04:00
Ricardo Wurmus f90b2dbdb7
gnu: irrlicht: Update to 1.8.4. 
* gnu/packages/games.scm (irrlicht): Update to 1.8.4.
[arguments]: Delete phase "apply-patch/mesa-10-fix".
[native-inputs]: Remove "patch/mesa-10-fix".
* gnu/packages/patches/irrlicht-mesa-10.patch: Delete file.
* gnu/local.mk (dist_path_DATA): Remove irrlicht patch.
 2016-10-17 17:11:51 +02:00
Adonay Felipe Nogueira 8a666bc5cb
gnu: artanis: Remove implied $(DESTDIR) usage. 
* gnu/packages/patches/artanis-fix-Makefile.in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/guile.scm (artanis)[source]: Use patch.
[arguments]: Remove DESTDIR from #:make-flags.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-17 15:20:11 +01:00
Al McElrath dd04f56a2b
gnu: node: Update to 6.8.0. 
Remove <https://debbugs.gnu.org/23744> and
<https://debbugs.gnu.org/23723> workaround.

* gnu/packages/node.scm (node): Update to 6.8.0.
  (node)[arguments]: Disabled more tests. Remove custom 'patch-shebangs'
  phase. Manually patch npm script shebang in new 'patch-npm-shebang'
  phase.
* gnu/packages/patches/node-9077.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-17 11:55:49 +02:00
Andreas Enge 60da9fb110
gnu: hdf4: Fix non-x86 architectures. 
* gnu/packages/patches/hdf4-architectures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-16 17:00:56 +02:00
Theodoros Foradis dbc3c34ea0
gnu: Add arm-none-eabi-gcc-6. 
* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable.
* gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file.
* gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patches.
 2016-10-16 11:53:07 +02:00
Leo Famulari e1376e25a7
gnu: gd: Fix CVE-2016-8670. 
* gnu/packages/patches/gd-CVE-2016-8670.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-10-15 15:31:49 -04:00
Efraim Flashner 76e8566c1b
gnu: freeimage: Fix CVE-2016-5684. 
* gnu/packages/image.scm (freeimage)[source]: Add patch.
* gnu/packages/patches/freeimage-CVE-2016-5684.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-14 13:42:43 +03:00
Leo Famulari e3d9da3c0c
gnu: gnupg: Remove superfluous patch. 
This patch was integrated into GnuPG 2.1.14.

* gnu/packages/patches/gnupg-fix-expired-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnupg.scm (gnupg)[source]: Remove patch.
 2016-10-13 10:05:23 -04:00
Mark H Weaver 061d7f3bd2
Merge branch 'master' into core-updates 2016-10-13 05:53:07 -04:00
Mark H Weaver 1de17a648f
gnu: ghostscript: Fix CVE-2013-5653 and CVE-2016-{7976,7978,7979,8602}. 
* gnu/packages/patches/ghostscript-CVE-2013-5653.patch,
gnu/packages/patches/ghostscript-CVE-2016-7976.patch,
gnu/packages/patches/ghostscript-CVE-2016-7978.patch,
gnu/packages/patches/ghostscript-CVE-2016-7979.patch,
gnu/packages/patches/ghostscript-CVE-2016-8602.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript/x): Inherit 'ghostscript/fixed'.
 2016-10-13 03:30:21 -04:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4 
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Leo Famulari 6671ce9370
gnu: ath9k-htc-firmware: Update binutils patch for binutils 2.27. 
* gnu/packages/patches/ath9k-htc-firmware-binutils.patch: Remove
unnecessary and conflicting hunk. Add hunk required for binutils 2.27.
 2016-10-12 16:17:22 -04:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Mark H Weaver bfb48f4f33
gnu: icecat: Update to 45.3.0-gnu1-beta. Add fixes from Firefox ESR 45.4.0. 
Includes fixes for CVE-2016-5250, CVE-2016-5257, CVE-2016-5261, CVE-2016-5270,
CVE-2016-5272, CVE-2016-5274, CVE-2016-5276, CVE-2016-5277, CVE-2016-5278,
CVE-2016-5280, CVE-2016-5281, and CVE-2016-5284.

* gnu/packages/gnuzilla.scm (mozilla-patch): New procedure.
(icecat): Update to 45.3.0-gnu1.
[source]: Add alternate source URI for the beta release.  Update patches.
[inputs]: Replace 'sqlite' input with a customized sqlite with
SQLITE_ENABLE_DBSTAT_VTAB support.
[native-inputs]: Add 'which'.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: Rename to...
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: ... and adapt
to version 45.
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
 2016-10-11 12:59:26 -04:00
Efraim Flashner bde70caa06
gnu: qemu: Patch CVE-2016-857{6,7,8}. 
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8578.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2016-10-11 10:59:07 +03:00
Marius Bakke fc0081213d
gnu: wpa-supplicant: Update to 2.6. 
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Update to
  2.6. Remove 'patches' field.
* gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: Delete
  files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-09 17:37:36 -04:00
Ricardo Wurmus 6f83d224bb
gnu: tcsh: Do not define BSDWAIT. 
* gnu/packages/patches/tcsh-do-not-define-BSDWAIT.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[source]: Use it.
 2016-10-09 22:38:37 +02:00
Leo Famulari 9e672bcc0b
gnu: libupnp: Fix CVE-2016-6255. 
* gnu/packages/patches/libupnp-CVE-2016-6255.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libupnp.scm (libupnp): Use it.
 2016-10-09 15:57:28 -04:00
Andy Patterson 4b51b21ccf
gnu: Add cl-clx. 
* gnu/packages/lisp.scm (cl-clx, sbcl-clx, ecl-clx): New variables.
* gnu/packages/patches/clx-remove-demo.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-08 21:20:35 +08:00
Efraim Flashner 2ff746dcd2
gnu: isl: Add support for aarch64. 
* gnu/packages/gcc.scm (isl)[source]: Add patch.
* gnu/packages/patches/isl-0.11.1-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-07 12:26:44 +03:00
Leo Famulari 1d8de185b8
gnu: openssl: Update to 1.0.2j. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2j.
[replacement]: Remove field
[source]: Remove 'openssl-CVE-2016-2177.patch' and
'openssl-CVE-2016-2178.patch'.
(openssl-1.0.2j): Remove variable.
(openssl-next)[replacement]: Remove field.
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-06 17:50:17 -04:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-06 18:14:45 +02:00
Leo Famulari 22f08f0605
gnu: libxvmc: Update to 1.0.10. 
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.10.
[replacement]: Remove field.
(libxvmc/fixed): Remove variable.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:26 -04:00
Leo Famulari 62ad505603
gnu: libxv: Update to 1.0.11. 
* gnu/packages/xorg.scm (libxv): Update to 1.0.11.
[replacement]: Remove field.
(libxv/fixed): Remove variable.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:25 -04:00
Leo Famulari 82e6a4341b
gnu: libxtst: Update to 1.2.3. 
* gnu/packages/xorg.scm (libxtst): Update to 1.2.3.
[replacement]: Remove field.
(libxtst/fixed): Remove variable.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:25 -04:00
Leo Famulari 9eb76bd3e5
gnu: libxrender: Update to 0.9.10. 
* gnu/packages/xorg.scm (libxrender): Update to 0.9.10.
[replacement]: Remove field.
(libxrender/fixed): Remove variable.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-05 19:36:25 -04:00
Leo Famulari 2e81b0b5bf
gnu: libxrandr: Update to 1.5.1. 
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.1.
[replacement]: Remove field.
(libxrandr/fixed): Remove variable.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:24 -04:00
Leo Famulari 571fa535cd
gnu: libxi: Update to 1.7.7. 
* gnu/packages/xorg.scm (libxi): Update to 1.7.7.
[replacement]: Remove field.
(libxi/fixed): Remove variable.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:24 -04:00
Leo Famulari 3e1ed70f74
gnu: libxfixes: Update to 5.0.3. 
* gnu/packages/xorg.scm (libxfixes): Update to 5.0.3.
[replacement]: Remove field.
(libxfixes/fixed): Remove variable.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:24 -04:00
Leo Famulari 4dd841c1dc
gnu: libx11: Update to 1.6.4. 
* gnu/packages/xorg.scm (libx11): Update to 1.6.4.
[replacement]: Remove field.
(libx11/fixed): Remove variable.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-05 19:36:24 -04:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 813062a5f7
gnu: libxvmc: Fix CVE-2016-7953. 
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxvmc)[replacement]: New field.
(libxvmc/fixed): New variable.
 2016-10-05 17:37:23 -04:00
Leo Famulari e73631a906
gnu: libxv: Fix CVE-2016-5407. 
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxv)[replacement]: New field.
(libxv/fixed): New variable.
 2016-10-05 17:37:22 -04:00
Leo Famulari 1f90b80f8b
gnu: libxtst: Fix CVE-2016-{7951,7952}. 
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxtst)[replacement]: New field.
(libxtst/fixed): New variable.
 2016-10-05 17:37:22 -04:00
Leo Famulari 666d40193c
gnu: libxrender: Fix CVE-2016-{7949,7950}. 
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libxrender)[replacement]: New field.
(libxrender/fixed): New variable.
 2016-10-05 17:37:22 -04:00
Leo Famulari a300db1c7f
gnu: libxrandr: Fix CVE-2016-{7947,7948}. 
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxrandr)[replacement]: New field.
(libxrandr/fixed): New variable.
 2016-10-05 17:37:21 -04:00
Leo Famulari b78ba2274f
gnu: libxi: Fix CVE-2016-{7945,7946}. 
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxi)[replacement]: New field.
(libxi/fixed): New variable.
 2016-10-05 17:37:21 -04:00
Leo Famulari b50c6bf2a8
gnu: libxfixes: Fix CVE-2016-7944. 
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxfixes)[replacement]: New field.
(libxfixes/fixed): New variable.
 2016-10-05 17:37:21 -04:00
Leo Famulari 13c10b4ca4
gnu: libx11: Fix CVE-2016-{7942,7943}. 
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11/fixed): New variable.
 2016-10-05 17:37:15 -04:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686. 
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
 2016-10-05 15:11:08 +02:00
Ludovic Courtès a884fa2141
gnu: rush: Update to 1.8. 
* gnu/packages/rush.scm (rush): Update to 1.8.
[source]: Remove 'patches'.
* gnu/packages/patches/cpio-gets-undeclared.patch,
gnu/packages/patches/rush-CVE-2013-6889.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-10-04 16:37:59 +02:00
Ben Woodcroft 2c3eb4b85b
gnu: metabat: Update to 0.32.4-1.cbdca756. 
* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756.
* gnu/packages/patches/metabat-remove-compilation-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-10-04 22:02:52 +10:00
Leo Famulari 9c2130757c
Merge branch 'master' into core-updates 2016-10-03 17:08:05 -04:00
Leo Famulari b38e97e03b
gnu: libarchive: Fix several security issues. 
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-10-03 16:52:28 -04:00
Leo Famulari 917de2511b
gnu: gd: Fix CVE-2016-7568. 
* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-10-01 12:27:37 -04:00
Ludovic Courtès 5bde29685b
gnu: perl: Make builds reproducible again. 
* gnu/packages/patches/perl-reproducible-build-date.patch: Add hunks to
set 'myuname', 'cf_time', and 'cf_by' in 'Configure'.
 2016-10-01 15:20:08 +02:00
Ivan Vilata i Balaguer 37356e0bf8
gnu: Add quickswitch-i3. 
* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-01 10:56:11 +08:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Rene Saavedra 411264c250
gnu: linux-pam: Allow compilation on GNU/Hurd. 
* gnu/packages/patches/linux-pam-no-setfsuid.patch: New file.
* gnu/packages/linux.scm (linux-pam)[source]: Use it.
(linux-pam-1.2)[source]: Likewise.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 23:01:49 +02:00
Ludovic Courtès 789f09a073
gnu: binutils: Work around Bash 4.2 bug. 
Fixes a 'binutils-cross-boot0' build failure on mips64el.

Reported at
<https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01083.html>.

* gnu/packages/patches/binutils-mips-bash-bug.patch: New file.
* gnu/packages/base.scm (binutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-28 22:44:38 +02:00
Leo Famulari b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718. 
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:49:49 -04:00
Ricardo Wurmus 204adc3017
gnu: azr3: Fix libsigc++ build errors. 
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-26 10:47:58 +02:00
Danny Milosavljevic 03ddad84ba
gnu: flashrom: Update to 0.9.9 
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-23 19:03:19 -04:00
Efraim Flashner 0dbb7ac2df
gnu: plink: Set endian-ness on more architectures. 
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-09-22 22:42:37 +03:00
Leo Famulari d404a6f971
gnu: gnupg: Fix test failure. 
* gnu/packages/patches/gnupg-fix-expired-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg): Use it.
 2016-09-19 16:09:56 -04:00
Efraim Flashner b8ea5204ab
gnu: Add onionshare. 
* gnu/packages/tor.scm (onionshare): New variable.
* gnu/packages/patches/onionshare-fix-install-paths.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-18 23:19:46 +03:00
Ricardo Wurmus 921cb13a96
gnu: Add llvm-for-extempore. 
* gnu/packages/llvm.scm (llvm-for-extempore): New variable.
* gnu/packages/patches/llvm-for-extempore.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-16 17:31:12 +02:00
Jan Nieuwenhuizen 253745d756
gnu: hydra: Update to 20151030.1ff48da. 
* gnu/packages/ci.scm (hydra): Update to 20151030.1ff48da (fixes building with
nix-1.11.x).
[source]: Remove 'hydra-automake-1.15.patch'.
[inputs]: Add libpqxx and perl-net-statsd.
* gnu/packages/patches/hydra-automake-1.15.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-14 15:43:07 -04:00
Leo Famulari 362bc747a2
gnu: mysql: Update to 5.7.15 [fixes CVE-2016-6662]. 
* gnu/packages/databases.scm (mysql): Update to 5.7.15.
[source]: Remove obsolete 'mysql-fix-failing-test.patch'.
* gnu/packages/patches/mysql-fix-failing-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-09-14 13:52:18 -04:00
Leo Famulari b1a782b11a
gnu: expat: Update to 2.2.0. 
* gnu/packages/xml.scm (expat): Update to 2.2.0.
[source]: Use 'expat-CVE-2016-0718-fix-regression.patch'. Remove obsolete
patches.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch,
gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Add and remove patches.
 2016-09-13 20:37:33 -04:00
Ludovic Courtès e7e43727ce
gnu: gcc: Work around ARM bootstrapping failure (GCC bug #71399). 
* gnu/packages/patches/gcc-arm-bug-71399.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.9)[source]: Use it.
 2016-09-12 18:20:50 +02:00
Andreas Enge 378920defc
gnu: python-django: Add patch file. 
* gnu/packages/patches/python-django-fix-testcase.patch: New file.

This is a follow-up to commit d18197af78.
 2016-09-12 17:27:33 +02:00
Leo Famulari 35eade9cf3
gnu: jbig2dec: Update to 0.13. 
* gnu/packages/image.scm (jbig2dec): Update to 0.13.
[source]: Update URL.
[home-page]: Update URL.
* gnu/packages/patches/jbig2dec-ignore-testtest.patch: Adjust patch.
 2016-09-11 13:04:00 -04:00
Leo Famulari c41d97bed6
gnu: mupdf: Update to 1.9a. 
* gnu/packages/pdf.scm (mupdf): Update to 1.9a.
[source]: Use "mupdf-build-with-openjpeg-2.1.patch". Adjust snippet to
preserve bundled 'thirdparty/mujs'.
[inputs]: Add harfbuzz. Replace openjpeg-2.0 with openjpeg.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-09 21:03:20 -04:00
Leo Famulari 4ce01773f3
gnu: openjpeg: Fix CVE-2016-5157. 
* gnu/packages/patches/openjpeg-CVE-2016-5157.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg): Use it.
 2016-09-09 21:03:19 -04:00
Leo Famulari 0f97e7e5cd
gnu: openjpeg-2.*: Fix CVE-2016-7163. 
* gnu/packages/patches/openjpeg-CVE-2016-7163.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0): Use it.
 2016-09-09 21:03:19 -04:00
Eric Bavier a2319d2c8f
gnu: Add Swish-e. 
* gnu/packages/search.scm (swish-e): New variable.
* gnu/packages/patches/swish-e-search.patch,
gnu/packages/patches/swish-e-format-security.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-09-09 00:45:14 -05:00
Eric Bavier 1fa3e33604
gnu: Add steghide. 
* gnu/packages/image.scm (steghide): New variable.
* gnu/packages/patches/steghide-fixes.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-09 00:45:14 -05:00
Danny Milosavljevic a287fafef2
gnu: lua-5.1: install pkg-config file. 
* gnu/packages/patches/lua51-pkgconfig.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/lua.scm (lua-5.1)[source]: Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-09-06 22:02:17 +03:00
Leo Famulari 3ed3c105e3
gnu: slock: Fix CVE-2016-6866. 
* gnu/packages/patches/slock-CVE-2016-6866.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/suckless.scm (slock): Use it.
 2016-09-06 14:52:15 -04:00
Leo Famulari 763899f0db
gnu: Add openssl-next. 
* gnu/packages/tls.scm (openssl-next): New variable.
* gnu/packages/patches/openssl-1.1.0-c-rehash-in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-06 13:47:32 -04:00
Kei Kebreau adbd7faf41
gnu: Add p7zip. 
* gnu/packages/compression.scm (p7zip): New variable.
* gnu/packages/patches/remove-unused-p7zip-code.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-09-04 16:27:31 +02:00
Danny Milosavljevic 8cfdd64c37
gnu: dtc: Update to 1.4.2. 
* gnu/packages/u-boot.scm (dtc): Update to 1.4.2. Delete patch.
* gnu/packages/patches/dtc-add-missing-symbols-to-lds.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Delete patch.

Signed-off-by: David Craven <david@craven.ch>
 2016-09-04 13:00:46 +02:00
Ricardo Wurmus 69913ed0e6
Merge branch 'gtk-im-modules' 2016-09-04 08:19:10 +02:00
Ludovic Courtès 072e10615f
Merge branch 'master' into core-updates 2016-09-02 15:39:50 +02:00
Ludovic Courtès e0649ff3c0
gnu: gawk: Update to 4.1.4. 
* gnu/packages/gawk.scm (gawk): Update to 4.1.4.
[source]: Remove 'patches'.
[arguments]: Add 'adjust-test-infrastructure' phase.
* gnu/packages/patches/gawk-fts-test.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-09-02 15:39:10 +02:00
Danny Milosavljevic f63e5eaaeb
gnu: dtc: Add missing symbols patch from debian. 
* gnu/packages/u-boot.scm (dtc)[source]: Add patch.
* gnu/packages/patches/dtc-add-missing-symbols-to-lds.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: David Craven <david@craven.ch>
 2016-09-02 00:16:34 +02:00
Leo Famulari 7335ca1d71
gnu: icedtea-6: Update to 1.13.12 [security fixes]. 
Fixes CVE-2016-{3458,3485,3500,3508,3550,3606}.

* gnu/packages/java.scm (icedtea-6): Update to 1.13.12.
[source]: Remove 'icedtea-remove-overrides' patch.
[arguments]: Move ALSA header substitution to 'patch-paths' phase.
* gnu/packages/patches/icedtea-remove-overrides.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-08-31 19:04:46 -04:00
Efraim Flashner 7a3f940541
gnu: fossil: Update to 1.35. 
* gnu/packages/version-control.scm (fossil): Update to 1.35.
[source]: Download from fossil-scm.org, remove patch, remove snippet.
* gnu/packages/patches/fossil-test-fixes.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-08-31 00:57:05 +03:00
Leo Famulari 72df668061
gnu: python-3: Update to python-3.5.2. 
* gnu/packages/patches/python-3.4-fix-tests.patch,
gnu/packages/patches/python-3.5-fix-tests.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/patches/python-fix-tests.patch: Move python-3.4 specific
hunk to 'gnu/packages/patches/python-3.4-fix-tests.patch'.
* gnu/packages/python.scm (python-3.5): New variable.
(python-3.4): Inherit from python-3.5.
[source]: Use 'gnu/packages/patches/python-3.4-fix-tests.patch'.
(python-3): Point to python-3.5.

Co-authored-by: Diane Trout <diane@ghic.org>
Co-authored-by: Christopher Allan Webber <cwebber@dustycloud.org>
 2016-08-29 21:44:15 -04:00
Christopher Allan Webber d0b73960db
gnu: python-3.4: Update to 3.4.5. 
* gnu/packages/patches/python-disable-ssl-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-3.4): Update to 3.4.5.
[source]: Remove patch.
[arguments]: Remove field.
(python-minimal)[inputs]: Add libffi.
 2016-08-29 21:44:11 -04:00
Leo Famulari 4b4fc92fe5
Merge branch 'master' into core-updates 2016-08-29 21:03:52 -04:00
Leo Famulari 4e9d5055fb
gnu: libtiff: Fix CVE-2016-5314. 
* gnu/packages/patches/libtiff-CVE-2016-5314.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
 2016-08-29 20:55:07 -04:00
Leo Famulari ed5940b617
gnu: libtiff: Fix CVE-2016-{3623,3945,3990,3991,5321,5323}. 
* gnu/packages/image.scm (libtiff)[replacement]: New field.
(libtiff/fixed): New variable.
* gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-08-29 20:20:52 -04:00
Efraim Flashner b3d2be945d
Merge remote-tracking branch 'origin/master' into core-updates 2016-08-29 23:46:33 +03:00
Efraim Flashner a29a5f968a
gnu: cmake: Remove failed tests. 
* gnu/packages/patches/cmake-fix-tests.patch: Update file.
 2016-08-29 20:12:43 +03:00
Efraim Flashner 7ca3ce6b9f
gnu: xf86-video-openchrome: Update to 0.5.0. 
* gnu/packages/xorg.scm (xf86-video-openchrome): Update to 0.5.0.
[source]: Remove patch.
* gnu/packages/patches/xf86-video-openchrome-glibc-2.20.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-08-28 20:31:30 +03:00
Ricardo Wurmus 234e7980b5
gnu: gtk+: Add patch to support GUIX_GTK3_IM_MODULE_FILE. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch: New file.
* gnu/packages/gtk.scm (gtk+)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-28 09:55:36 +02:00
Ricardo Wurmus 711670c04f
gnu: gtk+-2: Add patch to support GUIX_GTK2_IM_MODULE_FILE. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_IM_MODULE_FILE.patch: New file.
* gnu/packages/gtk.scm (gtk+-2)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-28 09:55:36 +02:00
Leo Famulari eba7fab890
gnu: flex: Fix CVE-2016-6354. 
* gnu/packages/flex.scm (flex)[source]: Add patch.
* gnu/packages/patches/flex-CVE-2016-6354.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-27 20:47:01 -04:00
Leo Famulari 6bd9a3432c
gnu: mupdf: Fix CVE-2016-{6265,6525}. 
* gnu/packages/patches/mupdf-CVE-2016-6265.patch,
gnu/packages/patches/mupdf-CVE-2016-6525.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf): Use them.
 2016-08-27 17:35:21 -04:00
Mark H Weaver 0bd865101d
gnu: guile-static: Adapt guile-relocatable.patch to guile-2.0.12. 
* gnu/packages/patches/guile-relocatable.patch: Adapt to guile-2.0.12.
 2016-08-21 06:30:15 -04:00
宋文武 a7f05b4192
gnu: gimp: Update to 2.8.16. 
* gnu/packages/patches/gimp-CVE-2016-4994.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gimp.scm (gimp): Update to 2.8.16.
[source]: Remove patch.
 2016-08-21 08:28:42 +08:00
Leo Famulari 9efd4312db
gnu: fontconfig: Update to 2.12.1. 
* gnu/packages/fontutils.scm (fontconfig): Update to 2.12.1.
(fontconfig/fixed): Remove variable.
* gnu/packages/patches/fontconfig-CVE-2016-5384.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-08-17 23:36:28 -04:00
Leo Famulari 015ee84aac
Merge branch 'master' into core-updates 2016-08-17 23:35:22 -04:00
Eric Bavier 22df70010a
gnu: Add NetSurf. 
* gnu/packages/web.scm (netsurf): New variable.
* gnu/packages/patches/netsurf-about.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-17 22:08:32 -05:00
Leo Famulari a3d6e1f432
gnu: perl: Update to 5.24.0. 
* gnu/packages/perl.scm: Update to 5.24.0.
[source]: Add and remove patches.
* gnu/packages/patches/perl-reproducible-build-date.patch: New file.
* gnu/packages/patches/perl-CVE-2015-8607.patch,
gnu/packages/patches/perl-CVE-2016-2381.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Add and remove patches.
 2016-08-17 22:55:15 -04:00
Leo Famulari 53dcbbec07
gnu: cracklib: Fix CVE-2016-6318. 
* gnu/packages/patches/cracklib-CVE-2016-6318.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (cracklib)[source]: Use the patch.
 2016-08-17 00:40:39 -04:00
Efraim Flashner 74a3c4bb6c
gnu: procps: Update to 3.3.12. 
* gnu/packages/linux.scm (procps): Update to 3.3.12.
[source]: Remove patch.
* gnu/packages/patches/procps-non-linux.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-08-15 10:42:27 +03:00
Jelle Licht f2b4c18cd9
gnu: jq: Fix CVE-2015-8863. 
* gnu/packages/patches/jq-CVE-2015-8863.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (jq)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-11 15:42:32 -04:00
Jan Nieuwenhuizen b3de5ff221
gnu: Add laby. 
* gnu/packages/patches/laby-make-install.patch: New file.
* gnu/local.mk (dist_patch_DATA): gnu-system.am: Add it.
* gnu/packages/games.scm (laby): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-08-11 19:45:22 +08:00
Efraim Flashner f64b989b1b
gnu: dico: Update to 2.3. 
* gnu/packages/dico.scm (dico): Update to 2.3.
[inputs]: Add python-2, groff. Upgrade readline-6.2 to latest.
[source]: Remove patches.
* gnu/packages/patches/dico-idxcide-bug.patch,
* gnu/packages/patches/dico-libtool-deterministic.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-08-11 13:20:12 +03:00
Ben Woodcroft 1db791d5f4
gnu: ruby-rack: Update to 2.0.1. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.1.
[source]: Use GitHub and patch.
[native-inputs]: Add ruby-concurrent, ruby-minitest, ruby-minitest-sprint,
which.  Remove ruby-bacon.
[propagated-inputs]: Add ruby-concurrent.
* gnu/packages/patches/ruby-rack-ignore-failing-test.patch: New file.
* gnu/local.mk: Add it.
 2016-08-10 15:36:33 +10:00
Ben Woodcroft 3840373b39
gnu: ruby-puma: Update to 3.6.0. 
* gnu/packages/ruby.scm (ruby-puma): Update to 3.6.0.
[arguments]: Add 'delete-integration-tests' phase.
(gnu/packages/patches/ruby-puma-ignore-broken-test.patch):
Remove only one broken test.
 2016-08-10 15:36:33 +10:00
Tomáš Čech ba6d25f3b9
gnu: bash-completion: Update to 2.3. Update the patch. 
* gnu/packages/bash.scm (bash-completion): Update to 2.3.
* gnu/packages/patches/bash-completion-directories.patch: New version of
  the patch for the same purpose.
 2016-08-09 09:23:38 +02:00
Danny Milosavljevic 8d60dd7174
gnu: Add perl-net-dns-resolver-programmable. 
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable): New variable.
* gnu/packages/patches/perl-net-dns-resolver-programmable-Fix-broken-interface.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-08-08 22:36:36 -04:00
Leo Famulari 6b5e654dd4
gnu: fontconfig: Fix CVE-2016-5384. 
* gnu/packages/fontutils.scm (fontconfig)[replacement]: New field.
(fontconfig/fixed): New variable.
* gnu/packages/patches/fontconfig-CVE-2016-5384.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-08 20:33:21 -04:00
Mark H Weaver 536fc5f8cd
Merge branch 'core-updates' 2016-08-04 08:17:05 -04:00
Mark H Weaver 0832787e5c
Revert "Merge branch 'core-updates'" 
This reverts commit 455859a50f.
 2016-08-04 08:16:38 -04:00
Ricardo Wurmus 8b52167e77
gnu: python-statsmodels: Fix tests. 
* gnu/packages/statistics.scm (python-statsmodels): Add patch to fix tests.
(python2-statsmodels)[propagated-inputs]: Add python2-pytz.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-04 13:40:13 +02:00
Pjotr Prins 0a4ebe0148
gnu: Add Elixir. 
* gnu/packages/elixir.scm: New file.
* gnu/packages/patches/elixir-disable-failing-tests.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-08-02 18:31:29 +02:00
Ludovic Courtès 455859a50f
Merge branch 'core-updates' 2016-08-01 23:30:52 +02:00
Mark H Weaver 742effef56
gnu: openssh: Update to 7.3p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.3p1.
[source]: Remove patches.
* gnu/packages/patches/openssh-CVE-2015-8325.patch,
gnu/packages/patches/openssh-CVE-2016-6210-1.patch,
gnu/packages/patches/openssh-CVE-2016-6210-2.patch,
gnu/packages/patches/openssh-CVE-2016-6210-3.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-08-01 14:27:08 -04:00
Mark H Weaver 3d337bbc39
Merge branch 'master' into core-updates 2016-07-31 23:27:03 -04:00
Andreas Enge 42bf34298e
gnu: rapicorn: Add patch to handle isnan. 
* gnu/packages/patches/rapicorn-isnan.patch: New file.
* gnu/packages/graphics.scm (rapicorn)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2016-07-31 18:16:25 +02:00
Andreas Enge 101e847294
gnu: dealii: Update to 8.4.1. 
* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
 2016-07-31 15:22:41 +02:00
宋文武 85860fdf82
gnu: glibc-locales: Fix build. 
* gnu/packages/patches/glibc-locales.patch: Adjust to glibc-2.23.
* gnu/packages/base.scm (glibc-locales)[arguments]:
Pass 'lib_cv_complocaledir'.
 2016-07-31 10:42:47 +08:00
Eric Bavier 9b1ada4e81
gnu: Add Tux Paint. 
* gnu/packages/games.scm (tuxpaint): New variable.
* gnu/packages/patches/tuxpaint-stamps-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-29 21:50:15 -05:00
Alex Griffin 23319ed674
gnu: beets: Update to 1.3.19. 
* gnu/packages/music.scm (beets): Update to 1.3.19.
[source]: Remove patch to skip failing tests.
* gnu/packages/patches/beets-image-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-29 19:19:49 -04:00
Mark H Weaver 359aba76b6
Merge branch 'master' into core-updates 2016-07-29 18:29:58 -04:00
Mark H Weaver 9bdf56dc13
gnu: gd: Add fix for gd2_read test. 
* gnu/packages/patches/gd-fix-gd2-read-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add patch.
 2016-07-29 18:28:40 -04:00
Mark H Weaver 31c995f8af
Revert "gnu: gd: Add fix for gd2_read test." 
This reverts commit ce290354ec.
 2016-07-29 16:17:35 -04:00
Mark H Weaver ce290354ec
gnu: gd: Add fix for gd2_read test. 
* gnu/packages/patches/gd-fix-gd2-read-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add patch.
 2016-07-29 16:06:43 -04:00
Mark H Weaver 0bab3af078
Merge branch 'master' into core-updates 2016-07-29 14:18:07 -04:00
Mark H Weaver a81445737d
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
 2016-07-29 13:56:39 -04:00
Leo Famulari 49d725a108
Merge branch 'master' into core-updates 2016-07-28 16:46:27 -04:00
Leo Famulari a1dfa02233
Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]." 
This reverts commit ae46cd0e4c.
 2016-07-28 16:45:02 -04:00
Mark H Weaver 622c22ccb4
Merge branch 'master' into core-updates 2016-07-28 14:13:26 -04:00
Mark H Weaver ae46cd0e4c
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
 2016-07-28 14:06:12 -04:00
Ludovic Courtès 212163f8d5
gnu: dico: Patch 'idxgcide' bug. 
* gnu/packages/patches/dico-idxgcide-bug.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-28 14:18:59 +02:00
Andreas Enge e309c75610
Merge remote-tracking branch 'origin/master' into core-updates 2016-07-28 11:08:55 +02:00
Leo Famulari e335b82c4e
gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}]. 
* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
 2016-07-28 02:08:49 -04:00
Alex Griffin b111bdb667
gnu: calibre: Update to 2.63.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.

* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.

Signed-off-by: Roel Janssen <roel@gnu.org>
 2016-07-27 23:45:16 +02:00
Andreas Enge 14656f4495
Merge remote-tracking branch 'origin/master' into core-updates 2016-07-25 21:58:36 +02:00
Efraim Flashner d841a292b2
gnu: openssh: Fix CVE-2016-6210. 
* gnu/packages/ssh.scm (openssh)[source]: Add patches
openssh-CVE-2016-6210-1.patch, openssh-CVE-2016-6210-2.patch,
openssh-CVE-2016-6210-3.patch.
* gnu/packages/patches/openssh-CVE-2016-6210-1.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-2.patch: New file.
* gnu/packages/patches/openssh-CVE-2016-6210-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register them.
 2016-07-24 16:18:41 +03:00
Ludovic Courtès 7575655212
Merge branch 'master' into core-updates 2016-07-20 11:42:17 +02:00
Eric Bavier 3b956a3392
gnu: llvm: Update to 3.8.1. 
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.8.1.
(llvm-3.7, clang-runtime-3.7, clang-3.7): New variables.
(clang-runtime-from-llvm)[arguments]: Disable tests, which were not
being run for previous versions anyhow but now fail hard.
(clang-from-llvm): Add #:patches keyword argument.
* gnu/packages/patches/clang-3.8-libc-search-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Dennis Mungai <dmngaie@gmail.scm>
 2016-07-18 20:28:21 -05:00
Leo Famulari 2d656a93db
Revert "gnu: gnutls: Fix test failure." 
This reverts commit 1d14bf9f5f.
 2016-07-18 12:47:18 -04:00
Mark H Weaver 273260646d
gnu: gd: Fix failing test on i686. 
* gnu/packages/patches/gd-fix-test-on-i686.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add the patch.
 2016-07-18 12:36:01 -04:00
Leo Famulari 1d14bf9f5f
gnu: gnutls: Fix test failure. 
* gnu/packages/patches/gnutls-fix-stale-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls/fixed): New variable.
 2016-07-18 12:30:39 -04:00
Leo Famulari a1537ac2ba
gnu: gd: Fix CVE-2016-{5766,6128,6132,6214}. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gd.scm (gd): Use patches.
 2016-07-16 12:49:22 -04:00
Ricardo Wurmus 0e6ee10c07
gnu: libmtp: Update to 1.1.11. 
* gnu/packages/patches/libmtp-devices.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.11.
 2016-07-10 18:02:04 +02:00
Ben Woodcroft ec2a67de88
gnu: Add python-dendropy. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-09 08:00:34 +10:00
Efraim Flashner 6baa83d283
gnu: sudo: Update to 1.8.17p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.17p1.
[source]: Remove patch.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-07-06 07:28:09 +03:00
Efraim Flashner dbd6bc5cc6
gnu: ninja: Update to 1.7.1. 
* gnu/packages/ninja.scm (ninja): Update to 1.7.1.
* gnu/packages/patches/ninja-tests.patch: Update patch.
 2016-07-03 12:00:25 +03:00
Efraim Flashner 6a628e8ba7
gnu: openimageio: Update to 1.6.15. 
* gnu/packages/graphics.scm (openimageio): Update to 1.6.15.
[source]: Remove patch.
* gnu/packages/patches/openimageio-boost-1.60.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-07-03 06:44:49 +03:00
Leo Famulari 9996ab16e6
gnu: gimp: Fix CVE-2016-4994. 
* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gimp.scm (gimp): Use it.
 2016-07-02 10:13:55 -04:00
Ricardo Wurmus b0069a6777
gnu: avrdude: Use libusb-compat. 
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
 2016-06-29 07:15:33 +02:00
Ben Woodcroft 94ff31572d
gnu: Add khmer. 
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-27 21:35:16 +10:00
Ludovic Courtès 01497dfe6c
Merge branch 'master' into core-updates 2016-06-27 09:30:01 +02:00
David Craven 9dd674db01
daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'. 
Partly fixes <http://bugs.gnu.org/22459>.
Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>.

* nix/libstore/globals.cc (Settings::processEnvironment()): Change
'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
* nix/local.mk (libstore_a_CPPFLAGS): Likewise.
* guix/config.scm.in (%config-directory): Likewise.
* build-aux/test-env.in: Likewise.
* gnu/packages/patches/hydra-automake-1.15.patch: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-26 23:11:07 +02:00
Leo Famulari 88c8d72f3c
gnu: beets: Update to 1.3.18. 
* gnu/packages/patches/beets-image-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (beets): Update to 1.3.18.
[source]: Use patch.
 2016-06-22 02:38:46 -04:00
Jan Nieuwenhuizen a837997cab
gnu: nasm: Make build bit-reproducible. 
* gnu/packages/patches/nasm-no-ps-pdf.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/assembly.scm (nasm): Use it.  Remove ghostscript, do not
build PS or PDF docs.  Makes build bit-reproducible.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-21 23:14:05 +02:00
Ben Woodcroft 9270298f75
gnu: Add ruby-puma. 
gnu/packages/ruby.scm (ruby-puma): New variable.
gnu/packages/patches/ruby-puma-ignore-broken-test.patch: New file.
gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-21 21:46:45 +10:00
Ludovic Courtès c0eeccbc24
Merge branch 'master' into core-updates 2016-06-17 15:48:27 +02:00
Carlo Zancanaro 3d1240aa25
gnu: Add awesome. 
* gnu/packages/wm.scm (awesome): New variable.
* gnu/packages/patches/awesome-reproducible-png.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-16 14:29:43 +02:00
Leo Famulari 9c4a8514d6
gnu: openssl: Fix CVE-2016-2177 and CVE-2016-2178. 
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (openssl/fixed): Use them.
 2016-06-15 10:48:13 -04:00
Hartmut Goebel d3a858cb32
gnu: Add teensy-loader-cli. 
* gnu/packages/flashing-tools.scm (teensy-loader-cli): New variable.
* gnu/packages/patches/teensy-loader-cli-help.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-15 15:27:48 +02:00
Ludovic Courtès 65efa9ba9c
gnu: mit-krb5: Update to 1.14.2. 
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.2.
[source]: Remove 'patches'.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-06-14 21:29:02 +02:00
Ludovic Courtès 28206a8ebf
gnu: automake: Adjust test to ignore new gzip warnings. 
* gnu/packages/patches/automake-test-gzip-warning.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-14 09:41:38 +02:00
Leo Famulari 28b33172c9
gnu: libxslt: Update to 1.1.29. 
* gnu/packages/patches/libxslt-CVE-2015-7995.patch,
gnu/packages/patches/libxslt-remove-date-timestamps.patch: Delete files.
* gnu/packages/xml.scm: Update to 1.1.29.
[source]: Remove patches.
 2016-06-12 22:09:39 -04:00
Leo Famulari ee86e7e148
Merge branch 'master' into core-updates 2016-06-12 22:09:26 -04:00
Leo Famulari 436dd04636
gnu: expat: Fix CVE-2012-6702 and CVE-2016-5300. 
* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (expat/fixed): Use it.
 2016-06-10 20:33:45 -04:00
Taylan Ulrich Bayırlı/Kammer 7c6058c082 gnu: higan: Various improvements. 
* gnu/packages/games.scm (higan): Use semi-official repository at GitLab
(using hotfix tag 098b which is equivalent to official release 098).
Add a patch to remove the build flag -march=native.  Set profile to
balanced.
* gnu/packages/patches/higan-remove-march-native-flag.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-10 17:40:27 +03:00
Mark H Weaver 993b400acb
Revert "gnu: libxml2: Add fix for CVE-2016-1762." 
This reverts commit 6e4f18cfdd.
 2016-06-08 18:17:13 -04:00
Mark H Weaver 6e4f18cfdd
gnu: libxml2: Add fix for CVE-2016-1762. 
* gnu/packages/patches/libxml2-CVE-2016-1762.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add patch.
 2016-06-08 14:26:54 -04:00
Mark H Weaver 98d9182205
gnu: icecat: Add fixes for CVE-2016-{2818,2819,2821,2824,2828,2831}. 
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-06-08 14:26:54 -04:00
Mark H Weaver c7c49446eb
gnu: libvpx: Add fix for CVE-2016-2818. 
* gnu/packages/patches/libvpx-CVE-2016-2818.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
 2016-06-08 14:26:54 -04:00
Ben Woodcroft dae620b8fe
gnu: Add ruby-concurrent. 
* gnu/packages/ruby.scm (ruby-concurrent): New variable.
* gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-08 21:36:02 +10:00
Ben Woodcroft 1e12924ae5
gnu: Add ruby-tzinfo-data. 
* gnu/packages/ruby.scm (ruby-tzinfo-data): New variable.
* gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-08 21:28:20 +10:00
Ludovic Courtès aeafff536f
Merge branch 'master' into core-updates 2016-06-07 11:54:03 +02:00
Ludovic Courtès 9dee9e8ffe
Revert "gnu: Default to GCC 5." 
This reverts commit e3d0fcbf7e.
This is a temporary measure until GCC 5 builds on ARM, see:

  https://gcc.gnu.org/bugzilla/show_bug.cgi?id=71399
 2016-06-07 10:52:04 +02:00
Manolis Ragkousis 5d4d7a9aa9
gnu: glibc-hurd: Update to 20160518. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518.
  [propagated-inputs]: Use hurd-core-headers.
  [native-inputs]: Remove libpthread's source and "patch/libpthread-patch".
  [arguments]: Add augment-libc.so and pre-configure-set-pwd phases.
  Remove prepare-libpthread phase.  Stop removing "--with-headers="
  from original-configure-flags.
* gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch.
* gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-06-06 14:42:45 +03:00
Leo Famulari 1c5ee417f4
gnu: imagemagick: Update to 6.9.4-7. 
* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-7.
[source]: Remove patch.
 2016-06-03 16:45:13 -04:00
Leo Famulari 1c6303fae0
gnu: icedtea: Update to 1.13.11. 
Fixes CVE-2016-{0686, 0687, 0695, 3425, 3427}.

* gnu/packages/patches/icedtea-remove-overrides.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (icedtea): Update to 1.13.11.
[source]: Use the patch.
[inputs]: Add libxcomposite.
 2016-06-01 02:29:01 -04:00
Leo Famulari e88eb07110
gnu: imagemagick: Fix CVE-2016-5118. 
* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (imagemagick): Use it.
 2016-05-31 13:38:40 -04:00
Leo Famulari 4d93a76138
gnu: graphicsmagick: Update to 1.3.24 [security update]. 
Fixes CVE-2016-{2317, 2318, 5118} and many other security issues
described in 'NEWS.txt'.

* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.24.
[source]: Remove patch.
 2016-05-31 13:33:09 -04:00
Leo Famulari df2dd07b88
gnu: libxml2: Update replacement to 2.9.4 [security fixes]. 
This fixes CVE-2016-{1762, 1833, 1834, 1835, 1836, 1837, 1838, 1839,
1840, 3627, 3705, 4483}.

* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2/fixed): Update to 2.9.4.
[source]: Remove patches.
 2016-05-30 21:47:40 -04:00
Efraim Flashner fd1461879c
gnu: mcrypt: Fix CVE-2012-4409, CVE-2012-4426, CVE-2012-4527. 
* gnu/packages/mcrypt.scm (mcrypt)[source]: Add patches.
* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4426.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 21:57:36 +03:00
Efraim Flashner c1dbd3a870
gnu: wordnet: Fix CVE-2008-2149, CVE-2008-3908. 
* gnu/packages/wordnet.scm (wordnet)[source]: Add patches.
* gnu/packages/patches/wordnet-CVE-2008-2149.patch,
gnu/packages/patches/wordnet-CVE-2008-3908-pt1.patch,
gnu/packages/patches/wordnet-CVE-2008-3908-pt2.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 20:14:06 +03:00
Efraim Flashner 1f521b7055
gnu: id3lib: Fix CVE-2007-4460. 
* gnu/packages/mp3.scm (id3lib)[source]: Add patch.
* gnu/packages/patches/id3lib-CVE-2007-4460.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 20:13:24 +03:00
Leo Famulari 726f088884
gnu: devil: Fix CVE-2009-3994. 
* gnu/packages/patches/devil-CVE-2009-3994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (devil): Use it.
 2016-05-30 12:36:26 -04:00
Alex Kost 4509ec72a4
gnu: emacs: Fix indentation of scheme keyword lists. 
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
 2016-05-30 13:09:43 +03:00
Efraim Flashner 5f1ba08953
gnu: gegl: Fix CVE-2012-4433. 
* gnu/packages/gimp.scm (gegl)[source]: Add patch.
* gnu/packages/patches/gegl-CVE-2012-4433.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 12:09:17 +03:00
Efraim Flashner 7d48938a59
gnu: vte-0.28: Fix CVE-2012-2738. 
* gnu/packages/gnome.scm (vte-0.28)[source]: Add patches.
* gnu/packages/patches/vte-CVE-2012-2738-pt1.patch,
gnu/packages/patches/vte-CVE-2012-2738-pt2.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 12:09:15 +03:00
Efraim Flashner 4f3e02f198
gnu: t1lib: Fix CVE-2010-2642, CVE-2011-{0764, 1552, 1553, 1554}. 
* gnu/packages/fontutils.scm (t1lib)[source]: Add patches.
* gnu/packages/patches/t1lib-CVE-2010-2642.patch,
gnu/packages/patches/t1lib-CVE-2011-0764.patch,
gnu/packages/patches/t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 12:09:14 +03:00
Efraim Flashner 538884ccef
gnu: jansson: Fix CVE-2016-4425. 
* gnu/packages/web.scm (jansson)[source]: Add patch.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 09:57:16 +03:00
Efraim Flashner 9116f12690
gnu: antiword: Fix CVE-2014-8123. 
* gnu/packages/textutils.scm (antiword)[source]: Add patch.
* gnu/packages/patches/antiword-CVE-2014-8123: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 09:57:09 +03:00
Efraim Flashner 6447e19108
gnu: a2ps: Fix CVE-2001-1593, CVE-2014-0466. 
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patches.
* gnu/packages/patches/a2ps-CVE-2001-1593.patch,
gnu/packages/patches/a2ps-CVE-2014-0466.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 07:44:29 +03:00
Leo Famulari ccda7c8317
gnu: pcre2: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pcre.scm (pcre2): Use it.
 2016-05-29 23:57:31 -04:00
Leo Famulari 0d567b5531
gnu: libyaml: Fix CVE-2014-9130. 
* gnu/packages/patches/libyaml-CVE-2014-9130.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (libyaml): Use it.
 2016-05-29 23:48:28 -04:00
Leo Famulari d8862778c1
gnu: graphicsmagick: Fix CVE-2016-5118. 
* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (graphicsmagick): Use it.
 2016-05-29 23:46:21 -04:00
Efraim Flashner b3d20b8280
gnu: vorbis-tools: Fix CVE-2014-9638, CVE-2014-9639, CVE-2014-9640. 
* gnu/packages/xiph.scm (vorbis-tools)[source]: Add patches.
* gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch,
gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 06:42:02 +03:00
Efraim Flashner e99dd67ad8
gnu: libtar: Fix CVE-2013-4420. 
* gnu/packages/compression.scm (libtar)[source]: Add patch.
* gnu/packages/patches/libtar-CVE-2013-4420.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.

This is a follow-up to 89d80159b1.
 2016-05-30 06:04:46 +03:00
Leo Famulari 65da8dd01e
gnu: rpm: Fix CVE-2014-8118. 
* gnu/packages/patches/rpm-CVE-2014-8118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/package-management.scm (rpm): Use it.
 2016-05-29 14:02:08 -04:00
Leo Famulari 1d982d787d
gnu: procmail: Fix CVE-2014-3618. 
* gnu/packages/patches/procmail-CVE-2014-3618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (procmail): Use it.
 2016-05-29 13:12:16 -04:00
Efraim Flashner 32fddd8e29
gnu: lua-5.1: Fix CVE-2014-5461. 
* gnu/packages/lua.scm (lua-5.1)[source]: Add patch.
* gnu/packages/patches/lua-CVE-2014-5461: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-29 09:47:46 +03:00
Leo Famulari b5d08d7c28
gnu: gd: Update to 2.2.1 [fixes CVE-2015-{8874, 8877}]. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gd.scm (gd): Update to 2.2.1.
[source]: Remove patch. Update source URL.
 2016-05-27 12:33:42 -04:00
Ludovic Courtès 2ca55f939c
gnu: rush: Fix CVE-2013-6889. 
* gnu/packages/patches/rush-CVE-2013-6889.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rush.scm (rush): Use it.
 2016-05-26 22:51:12 +02:00
Ludovic Courtès 493e9a5a8f
gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705. 
* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
 2016-05-24 14:15:18 +02:00
Ludovic Courtès bc73a84398
Merge branch 'master' into core-updates 2016-05-23 15:02:26 +02:00
Leo Famulari 119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283. 
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
 2016-05-19 10:27:18 -04:00
Leo Famulari fb2b0f5c87
gnu: gd: Fix-CVE-2016-3074. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-05-17 13:18:15 -04:00
Federico Beffa 1c29f3ef84 gnu: emacs-constants: Remove old patch. 
* gnu/packages/patches/emacs-constants-lisp-like.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove entry for above patch.
 2016-05-17 14:17:38 +02:00
Ludovic Courtès 74d637397b
gnu: tar: Update to 1.29. 
* gnu/packages/base.scm (tar): Update to 1.29.
[source]: Remove 'tar-d_ino_in_dirent-fix.patch'.
[arguments]: New field.
* gnu/packages/patches/tar-d_ino_in_dirent-fix.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-05-17 10:46:26 +02:00
Efraim Flashner 7d0c3c8d01
gnu: python-pandas: Update to 0.18.1. 
* gnu/packages/python.scm (python-pandas): Update to 0.18.1.
[native-inputs]: Remove python-setuptools.
[properties]: Define python2-pandas.
(python2-pandas)[native-inputs]: Add python2-setuptools.
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 17:39:42 +03:00
Efraim Flashner 30897c60a4
gnu: mdadm: Update to 3.4. 
* gnu/packages/linux.scm (mdadm): Update to 3.4.
[source]: Remove patch.
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 06:10:06 +03:00
Jan Nieuwenhuizen 9365ee1c46
gnu: Add gnome-tweak-tool. 
* gnu/packages/patches/gnome-tweak-tool-search-paths.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-tweak-tool): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-15 13:03:15 -04:00
Leo Famulari 4fa05a8198
gnu: libarchive: Update to 3.2.0. 
* gnu/packages/patches/libarchive-CVE-2013-0211.patch,
gnu/packages/patches/libarchive-CVE-2016-1541.patch,
gnu/packages/patches/libarchive-bsdtar-test.patch,
gnu/packages/patches/libarchive-fix-lzo-test-case.patch,
gnu/packages/patches/libarchive-mtree-filename-length-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/backup.scm (libarchive): Update to 3.2.0.
[source]: Remove deleted patches.
[replacement]: Remove.
(libarchive/fixed): Remove variable.
 2016-05-13 02:23:38 -04:00
Leo Famulari eb74eb4199
Merge branch 'master' into core-updates 2016-05-13 02:08:11 -04:00
Mark H Weaver 207c604637
Merge branch 'gnome-updates' 2016-05-12 18:48:36 -04:00
Mark H Weaver ef06d54a9b
gnu: icecat: Update to 38.8.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch,
gnu/packages/patches/icecat-update-bundled-graphite2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu1.
[source] Remove deleted patches.
 2016-05-12 18:15:07 -04:00
Eric Bavier 889187a464 gnu: Add NetCDF. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
 2016-05-12 19:59:53 +00:00
Eric Bavier b8d9c93bde gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH. 
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-05-12 19:59:52 +00:00
Eric Bavier 528bb46436 gnu: Add HYPRE. 
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Eric Bavier b4e655e5f1 gnu: Add doc++. 
* gnu/packages/documentation.scm (doc++): New variable.
* gnu/packages/patches/doc++-include-directives.patch,
  gnu/packages/patches/doc++-segfault-fix.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Leo Famulari e7806e6caa
gnu: libarchive: Fix CVE-2016-1541. 
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-CVE-2016-1541.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-11 21:35:35 -04:00
Mark H Weaver 9f5e796753
Merge branch 'master' into gnome-updates 2016-05-11 13:37:47 -04:00
Mark H Weaver e2b89203db
gnu: totem: Fix build on i686. 
* gnu/packages/patches/totem-debug-format-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (totem)[source]: Add patch.
 2016-05-11 10:22:00 -04:00
Efraim Flashner cc6561e6a1
gnu: qemu: Update to 2.5.1. 
* gnu/packages/qemu.scm (qemu): Update to 2.5.1.
[source]: Remove patches.
* gnu/packages/patches/qemu-usb-ehci-oob-read.patch,
gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
gnu/packages/patches/qemu-CVE-2015-8558.patch,
gnu/packages/patches/qemu-CVE-2015-8567.patch,
gnu/packages/patches/qemu-CVE-2015-8613.patch,
gnu/packages/patches/qemu-CVE-2015-8619.patch,
gnu/packages/patches/qemu-CVE-2015-8701.patch,
gnu/packages/patches/qemu-CVE-2015-8743.patch,
gnu/packages/patches/qemu-CVE-2016-1568.patch,
gnu/packages/patches/qemu-CVE-2016-1922.patch,
gnu/packages/patches/qemu-CVE-2016-1981.patch,
gnu/packages/patches/qemu-CVE-2016-2197.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-09 20:43:35 +03:00
宋文武 6655a74326 Merge branch 'master' into gnome-updates 2016-05-08 17:54:46 +08:00
Alex Kost af5640d1dd gnu: tvtime: Update to 1.0.10. 
* gnu/packages/tv.scm (tvtime): Update to 1.0.10.
[source]: Remove patches.
[inputs]: Add 'alsa-lib'.
* gnu/packages/patches/tvtime-gcc41.patch,
gnu/packages/patches/tvtime-pngoutput.patch,
gnu/packages/patches/tvtime-videodev2.patch,
gnu/packages/patches/tvtime-xmltv.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-04 23:08:39 +03:00
Efraim Flashner 8c3e9a6a8d
gnu: gnupg: Update to 2.1.12. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.12.
[source]: Remove patch.
* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-04 22:20:45 +03:00
Mark H Weaver 8c15e084fe gnu: imlib2: Update to 1.4.9 [fixes CVE-2011-5326, CVE-2016-{3993,3994}]. 
* gnu/packages/image.scm (imlib2): Update to 1.4.9.
[source]: Remove patch.
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-04 13:51:48 -04:00
David Thompson d663e5e600
gnu: imagemagick: Update to 6.9.3-10. 
Fixes CVE-2016–3714.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.3-10.
[source]: Remove patch.
* gnu/packages/patches/imagemagick-test-segv.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove patch file from distribution.
 2016-05-04 13:22:52 -04:00
Mark H Weaver 4e9d04a80b Merge branch 'master' into gnome-updates 2016-05-04 11:43:50 -04:00
Manolis Ragkousis d46123aade gnu: procps: Make procps build on non Linux systems. 
* gnu/packages/patches/procps-non-linux.patch.patch: New patch.
* gnu/packages/linux.scm (procps)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-04 17:18:57 +03:00
Jan Nieuwenhuizen efc4eb1475
gnu: cross: Use CROSS_*_INCLUDE_PATH for system headers. 
* gnu/packages/patches/gcc-cross-environment-variables.patch: Also use CROSS_
variants: CROSS_C_INCLUDE_PATH, CROSS_CPLUS_INCLUDE_PATH,
CROSS_OBJC_INCLUDE_PATH, CROSS_OBJCPLUS_INCLUDE_PATH to be used for system
libraries, see
https://lists.gnu.org/archive/html/guix-devel/2016-04/msg00620.html.
* gnu/packages/cross-base.scm (cross-gcc, cross-gcc-arguments, cross-libc):
Use CROSS_*_INCLUDE_PATH (WAS: CPATH).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 17:45:29 +02:00
Mark H Weaver 0a17fd7c0b gnu: wpa-supplicant: Add fixes for CVE-2016-{4476,4477}. 
* gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Add patches.
 2016-05-03 09:39:59 -04:00
Roel Janssen 4c6aa73b8f
gnu: Add 4store. 
* gnu/packages/databases.scm (4store): New variable.
* gnu/packages/patches/4store-fix-buildsystem.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-02 14:45:57 -04:00
Leo Famulari 3854f3d7e4
gnu: ocaml: Fix CVE-2015-8869. 
* gnu/packages/patches/ocaml-CVE-2015-8869.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ocaml.scm (ocaml): Use it.
 2016-05-02 14:30:49 -04:00
Ricardo Wurmus aacb52fb0f gnu: Add portmidi. 
* gnu/packages/music.scm (portmidi): New variable.
* gnu/packages/patches/portmidi-modular-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-05-02 20:02:20 +02:00
Mathieu Lirzin c74c7c1317 gnu: libxslt: Make generated documentation reproducible. 
* gnu/packages/patches/libxslt-generated-ids.patch: New file.
* gnu/packages/patches/libxslt-remove-date-timestamps.patch: Likewise.
* gnu/packages/xml.scm (libxslt)[source]: Use them.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-02 17:54:01 +02:00
Mathieu Lirzin c3052d6bcd Merge branch 'master' into core-updates 2016-05-02 17:53:40 +02:00
宋文武 8e3593353e Revert "Revert "gnu: inkscape: Fix build with glibmm-2.48."" 
This reverts commit 267061ba0b.
 2016-05-02 22:06:39 +08:00
宋文武 6983ba5660 Revert "Revert "Merge branch 'gnome-updates'"" 
This reverts commit e969b140a4.
 2016-05-02 22:06:36 +08:00
Nicolas Goaziou d20708b6c5 gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-02 22:05:54 +08:00
Nicolas Goaziou acb31b5dcd
gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-01 17:58:39 -04:00
Leo Famulari e411ce1860
gnu: poppler: Fix CVE-2015-8868. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
* gnu/packages/patches/poppler-CVE-2015-8868.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-30 16:14:38 -04:00
Rob Syme b0e52f52b7 gnu: ruby: Update to 2.3.1. 
* gnu/packages/ruby.scm (ruby): Update to 2.3.1.
[origin] Add symlink patch.
* gnu/packages/patches/ruby-symlinkfix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-04-30 08:39:27 +10:00
Eric Bavier f36a1ebaab gnu: Add Fossil. 
* gnu/packages/version-control.scm (fossil): New variable.
* gnu/packages/patches/fossil-test-fixes.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-29 16:42:10 -05:00
Mark H Weaver dde2a94c09 gnu: icecat: Add fixes for CVE-2016-{2805,2807,2808,2814} etc. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-update-bundled-graphite2: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.

icecat fixup
 2016-04-28 10:25:19 -04:00
宋文武 6fdc73e099 gnu: fltk: Fix undefined symbol `Fl_XFont_On_Demand::value'. 
* gnu/packages/patches/fltk-xfont-on-demand.patch: New patch.
* gnu/packages/fltk.scm (fltk)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-28 12:23:51 +08:00
Eric Bavier f79ee25f32 gnu: woff2: Fix build parallelism. 
* gnu/packages/patches/woff2-libbrotli.patch: Add dependency of
executables on object files.
 2016-04-25 18:38:50 -05:00
Ludovic Courtès e3d0fcbf7e
gnu: Default to GCC 5. 
* gnu/packages/patches/gcc-libiberty-printf-decl.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source]: Use it.
(gcc): Switch to GCC-5.
* gnu/packages/commencement.scm (libstdc++-boot0): New variable.
(gcc-boot0)[inputs]: Add it.
[native-inputs]: Remove.
(gcc-toolchain-4.9): Switch to GCC-4.9.
(gcc-toolchain-5): Switch to GCC-FINAL.
* gnu-system.am (dist_patch_DATA): Add 'gcc-libiberty-printf-decl.patch'.
 2016-04-24 22:51:07 +02:00
Mark H Weaver e969b140a4 Revert "Merge branch 'gnome-updates'" 
This reverts commit 63655d459e, reversing
changes made to 80627f51f0.
 2016-04-23 13:13:53 -04:00
Mark H Weaver 267061ba0b Revert "gnu: inkscape: Fix build with glibmm-2.48." 
This reverts commit 0118c6ab62.
 2016-04-23 13:12:53 -04:00
Mark H Weaver 0118c6ab62 gnu: inkscape: Fix build with glibmm-2.48. 
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/inkscape.scm (inkscape)[source]: Add patch.
 2016-04-23 05:05:18 -04:00
Leo Famulari e993fb8493 gnu: imlib2: Fix CVE-2016-4024. 
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (imlib2): Use it.
 2016-04-22 23:59:37 -04:00
宋文武 63655d459e Merge branch 'gnome-updates' 2016-04-23 10:19:32 +08:00
Leo Famulari 67157996e2 gnu: openssh: Fix CVE-2015-8325. 
* gnu/packages/patches/openssh-CVE-2015-8325.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh): Use it.
 2016-04-17 13:48:31 -04:00
Ricardo Wurmus 534db46306 gnu: python-pandas: Fix test failures. 
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-pandas)[source]: Add patch.
 2016-04-17 11:36:25 +02:00
Jookia dbc3860ceb gnu: gtk+-2: Look in system data dirs for themes. 
* gnu/packages/patches/gtk2-theme-paths.patch: New patch.
* gnu/packages/gtk.scm (gtk+-2)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-16 11:46:50 +02:00
宋文武 7c951767c0 gnu: glib: Disable tests in build phases instead of patches. 
* gnu/packages/glib.scm (glib)[sources]: Remove glib-tests-desktop.patch,
glib-tests-prlimit.patch and glib-tests-gapplicatiotn.patch.
[arguments]: Add 'disable-falling-tests' phase.
* gnu/packages/patches/glib-tests-timer.patch: Adjust accordingly.
* gnu/packages/patches/glib-tests-desktop.patch,
  gnu/packages/patches/glib-tests-gapplication.patch,
  gnu/packages/patches/glib-tests-prlimit.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-16 11:44:24 +02:00
宋文武 7dd99e5573 gnu: glib: Drop glib-tests-homedir.patch. 
* gnu/packages/glib.scm (glib)[source]: Remove glib-tests-homedir.patch.
[arguments]: Set HOME and disable '/gdbus/codegen-peer-to-peer' test.
* gnu/packages/patches/glib-tests-homedir.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-16 11:43:54 +02:00
Eric Bavier 5391be116e gnu: fontforge: Make SVG builds reproducible. 
* gnu/packages/patches/fontforge-svg-modtime.patch: New file.
* gnu/packages/fontutils.scm (fontforge)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 579760d06e gnu: Add woff2. 
* gnu/packages/fontutils.scm (woff2): New variable.
* gnu/packages/patches/woff2-libbrotli.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 1555aee7d0 gnu: Add ttf2eot. 
* gnu/packages/fontutils.scm (ttf2eot): New variable.
* gnu/packages/patches/ttf2eot-cstddef.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:29 -05:00
Eric Bavier 1e69db8f14 gnu: Add ttfautohint. 
* gnu/packages/fontutils.scm (ttfautohint): New variable.
* gnu/packages/patches/ttfautohint-source-date-epoch.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-15 00:23:28 -05:00
Efraim Flashner 58e87f66ce gnu: icecat: Update to 38.7.1-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-10 08:40:42 +03:00
Ludovic Courtès a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Ludovic Courtès 425b8537e8 gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu/packages/pcre.scm (pcre)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 22:55:23 +02:00
Ludovic Courtès e37595d961 gnu: glibc: Update to 2.23. 
* gnu/packages/base.scm (glibc): Update to 2.23.  Remove
"glibc-locale-incompatibility.patch" and "glibc-CVE-2015-7547.patch",
now unneeded.
[arguments]: Add "libc_cv_ssp_strong=no" to #:configure-flags.  Remove
now unneeded patching of 'configure'.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: Remove.
* gnu/packages/patches/glibc-locale-incompatibility.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2016-04-06 22:24:13 +02:00
Efraim Flashner 0ea4079f34 gnu: abiword: Update to 3.0.1. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-06 23:15:59 +03:00
Ludovic Courtès 933d2fe4cf Merge branch 'master' into core-updates 2016-04-06 12:00:29 +02:00
Mark H Weaver 37b2dba1cc gnu: libextractor: Improve ffmpeg-3 patch. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional
fixes and harmonize with patches in upstream repository.
 2016-04-04 23:49:48 -04:00
Mark H Weaver fd7fd3c167 gnu: libextractor: Add patch to fix build with ffmpeg-3. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
 2016-04-04 22:55:52 -04:00
Efraim Flashner 451c1436a3 gnu: mc: Update to 4.8.16. 
* gnu/packages/mc.scm (mc): Update to 4.8.16.
[source]: Remove patch.
* gnu/packages/patches/mc-fix-ncurses-build.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-02 23:39:32 +03:00
Ludovic Courtès 915363a3e2 gnu: wicd: Add template for WPA2-TTLS. 
* gnu/packages/patches/wicd-wpa2-ttls.patch: New file.
* gnu/packages/wicd.scm (wicd)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-01 13:59:58 +02:00
Ludovic Courtès f5480572d0 gnu: wicd: Update to 1.7.4. 
* gnu/packages/wicd.scm (wicd): Update to 1.7.4.
[source]: Remove 'wicd-template-instantiation.patch'.
* gnu/packages/patches/wicd-template-instantiation.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-01 13:59:58 +02:00
Mark H Weaver 51514e6959 gnu: expat: Update to 2.1.1. 
* gnu/packages/patches/expat-CVE-2015-1283.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xml.scm (expat): Update to 2.1.1.
[source]: Use bz2 tarball.  Remove patch.
 2016-03-25 21:38:16 -04:00
Mark H Weaver 58cc369f32 gnu: webkitgtk-2.4: Update to 2.4.10 [fixes many security flaws]. 
Fixes CVE-2014-1748, CVE-2015-1071, CVE-2015-1076, CVE-2015-1081,
CVE-2015-1083, CVE-2015-1120, CVE-2015-1122, CVE-2015-1127, CVE-2015-1153,
CVE-2015-1155, CVE-2015-3658, CVE-2015-3659, CVE-2015-3727, CVE-2015-3731,
CVE-2015-3741, CVE-2015-3743, CVE-2015-3745, CVE-2015-3747, CVE-2015-3748,
CVE-2015-3749, CVE-2015-3752, CVE-2015-5788, CVE-2015-5794, CVE-2015-5801,
CVE-2015-5809, CVE-2015-5822, and CVE-2015-5928.

* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.10.
[source]: Remove patch.
 2016-03-22 07:38:22 -04:00
Ludovic Courtès cd6cc144e0 Merge branch 'security-updates' 2016-03-22 00:14:03 +01:00
Leo Famulari 064503aaa2 gnu: Add python-rarfile. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): New
variables.
* gnu/packages/patches/python-rarfile-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-03-18 14:27:16 -04:00
Mark H Weaver e3d3546eda gnu: libotr: Fix tests on mips64el. 
* gnu/packages/patches/libotr-test-auth-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (libotr)[source]: Add patch.
 2016-03-17 19:05:08 -04:00
Mark H Weaver a3b84f70d8 Merge branch 'master' into security-updates 2016-03-15 12:40:53 -04:00
Efraim Flashner 20109e07bd gnu: gitolite: Update to 3.6.5. 
* gnu/packages/version-control.scm (gitolite): Update to 3.6.5.
[source]: Remove patch.
* gnu/packages/patches/gitolite-openssh-6.8-compat.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-03-15 07:10:35 +02:00
Mark H Weaver 2c9f0b0770 Merge branch 'master' into security-updates 2016-03-12 15:07:41 -05:00
Andreas Enge 8e755b1bcd gnu: mupdf: Simplify package. 
* gnu/packages/pdf.scm (mupdf)[source]: Drop patch and part of snippet
  modifying permissions of files added by the patch.
  [arguments]: Use #:make-flags instead of modified build and install phases.
  Drop superfluous module inclusion. Use modify-phases syntax.
* gnu/packages/patches/mupdf-buildsystem-fix.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-03-12 09:56:27 +01:00
Ludovic Courtès ef0f0d5f97 gnu: vorbis-tools: Patch buffer overflow [fixes CVE-2015-6749]. 
* gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xiph.scm (vorbis-tools)[source]: Use it.
 2016-03-11 16:33:50 +01:00
Mark H Weaver c3499ad6b8 gnu: icecat: Add several security fixes. 
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-bug-1248851.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-03-10 10:52:41 -05:00
Ludovic Courtès 4cff124bbf gnu: openssl: Update to 1.0.2g. 
* gnu/packages/tls.scm (openssl)[replacement]: Remove.
[version, source]: Bump to 1.0.2g.  Use "openssl-c-rehash-in.patch"
instead of "openssl-c-rehash.patch".
(openssl-1.0.2g): Remove.
* gnu-system.am (dist_patch_DATA): Remove "openssl-c-rehash.patch".
 2016-03-09 15:20:34 +01:00
Efraim Flashner e224495ce1 gnu: jasper: Add fixes for CVE-2016-1577, CVE-2016-2089, CVE-2016-2116. 
* gnu/packages/patches/jasper-CVE-2016-1557.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-03-08 11:54:58 +02:00
Andreas Enge d7c4619bd1 gnu: Add einstein. 
* gnu/packages/games.scm (einstein): New variable.
* gnu/packages/patches/einstein-build.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-03-05 18:44:43 +01:00
Leo Famulari d8173f21f7 gnu: perl: Replace with patched version [fixes CVE-2016-2381]. 
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl-fixed): New variable.
* gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
 2016-03-03 14:56:23 -05:00
Lukas Gradl e90819c40a gnu: Add procmail. 
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
 * gnu-system.am (dist_patch_DATA): Add it.
 * gnu/packages/mail.scm (procmail): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-02 20:44:18 -05:00
Mark H Weaver b134a80c36 gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]. 
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-03-02 15:13:15 -05:00
Leo Famulari 5e8276dcf4 gnu: ilmbase: Add patch to fix build on i686. 
Fixes <http://bugs.gnu.org/22049>.

* gnu/packages/patches/ilmbase-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (ilmbase)[source]: Add patch.
 2016-03-01 19:08:31 -05:00
Ludovic Courtès caeadfddb0 gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}]. 
See <http://openssl.org/news/secadv/20160301.txt>.
Also fixes <http://bugs.gnu.org/22831>.

* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
 2016-03-01 16:00:46 +01:00
Mark H Weaver 9579118922 gnu: bitlbee: Update to 3.4.1. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
 2016-02-27 21:10:56 -05:00
Ricardo Wurmus a003b5b650 gnu: scribus: Update to 1.5.1. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-02-27 16:34:20 +01:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste. 
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-02-25 11:01:45 -08:00
Mark H Weaver e62b5c6903 Merge branch 'media-updates' 2016-02-25 13:50:19 -05:00
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]. 
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:09 -05:00
Andy Wingo 2ae7a55062 gnu: xf86-video-vmware: Update to 13.1.0. 
* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bcd4a74039 gnu: xf86-video-trident: Update to 1.3.7. 
* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 816decebf2 gnu: xf86-video-tdfx: Update to 1.4.6. 
* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 5f59f5103a gnu: xf86-video-sis: Update to 0.10.8. 
* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch,
  gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8.
  [source]: Remove patches.
 2016-02-24 11:49:57 -05:00
Andy Wingo fc1172f787 gnu: xf86-video-siliconmotion: Update to 1.7.8. 
* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch:
  Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bfe27469b4 gnu: xf86-video-r128: Update to 6.10.1. 
* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea192db119 gnu: xf86-video-mga: Update to 1.6.4. 
* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Leo Famulari 4e58a402ff gnu: cpio: Add fix for CVE-2016-2037. 
* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio)[source]: Add patch.
 2016-02-19 18:04:15 -05:00
Mark H Weaver 3729ff4183 gnu: glibc: Add fix for CVE-2015-7547. 
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Add patch.
 2016-02-19 00:42:10 -05:00
Pjotr Prins 552f5c009e gnu: Add slurm. 
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-02-15 22:47:47 +01:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]. 
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
 2016-02-15 02:51:35 -05:00
Jan Nieuwenhuizen a747baba00 gnu: Add ocaml-findlib. 
* gnu/packages/ocaml.scm (ocaml-findlib): New variable.
* gnu/packages/patches/ocaml-findlib-make-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
 2016-02-13 09:15:55 +01:00
Mark H Weaver 3a7261bf96 gnu: gnupg: Add upstream fix for test failures on x86_64. 
Fixes <https://debbugs.gnu.org/22558>.

* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
 2016-02-12 21:02:24 -05:00
Jan Nieuwenhuizen 511539ae81 gnu: Add tclxml. 
* gnu/packages/patches/tclxml-3.2-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tclxml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 19:13:05 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes. 
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
 2016-02-11 14:59:16 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
 2016-02-10 10:41:11 -05:00
Christopher Allan Webber 6f74aecdb3 gnu: xdotools: Update to 3.20150503.1 
* gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1.
* gnu/packages/patches/xdotool-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 15:39:51 -08:00
Christopher Allan Webber a05d1d82c0 gnu: Add python-pygpgme 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables.
* gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-06 11:30:35 -08:00
Mark H Weaver 08cb746f08 gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites. 
* gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-02-06 08:48:20 -05:00
Mark H Weaver a7d8c466db gnu: icecat: Update to 38.6.0-gnu1. 
* gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1.
  [source]: Remove patches.
 2016-02-05 16:00:25 -05:00
Leo Famulari 90bcecc568 gnu: jasper: Add fixes for several security flaws. 
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-02-04 15:09:41 -05:00
Mark H Weaver 5fb205c638 gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f. 
* gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
 2016-02-04 00:15:21 -05:00
Federico Beffa e5045f303a gnu: Add emacs-constants. 
* gnu/packages/emacs.scm (emacs-constants): New variable.
* gnu/packages/patches/emacs-constants-lisp-like.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-02-03 10:48:36 +01:00
Federico Beffa e037a09f1d gnu: Add emacs-scheme-complete. 
* gnu/packages/emacs.scm (emacs-scheme-complete): New variable.
* gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2016-02-03 10:47:21 +01:00
Mark H Weaver fd9a5b0fc3 gnu: qemu: Update to 2.5.0; add fixes for security flaws. 
* gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file.
* gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
  gnu/packages/patches/qemu-CVE-2015-8558.patch,
  gnu/packages/patches/qemu-CVE-2015-8567.patch,
  gnu/packages/patches/qemu-CVE-2015-8613.patch,
  gnu/packages/patches/qemu-CVE-2015-8701.patch,
  gnu/packages/patches/qemu-CVE-2015-8743.patch,
  gnu/packages/patches/qemu-CVE-2016-1568.patch,
  gnu/packages/patches/qemu-CVE-2016-1922.patch: New files.
* gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the
  new patches.
* gnu/packages/qemu.scm (qemu): Update to 2.5.0.
  [source]: Remove old patches and add new ones.
  [arguments]: Add 'disable-test-qga' phase.
  (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
 2016-02-03 00:05:22 -05:00
Mark H Weaver 5e764e2b6f gnu: linux-libre: Update to 4.4.1. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.1.
  [source]: Remove patch.
 2016-02-01 23:47:35 -05:00
Eric Bavier e3f755f44c gnu: Add pinball. 
* gnu/packages/games.scm (pinball): New variable.
* gnu/packages/patches/pinball-const-fix.patch,
  gnu/packages/patches/pinball-cstddef.patch,
  gnu/packages/patches/pinball-missing-separators.patch,
  gnu/packages/patches/pinball-src-deps.patch,
  gnu/packages/patches/pinball-system-ltdl.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-01-31 23:46:30 -06:00
Efraim Flashner e5a2edeba0 gnu: perl-tk: Update to 804.033. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.033.
[source]: Remove patch.
* gnu/packages/patches/perl-tk-x11-discover.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch.
 2016-01-31 14:36:08 +02:00
Mark H Weaver 29a780147d gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs. 
* gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch,
  gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch,
  gnu/packages/patches/icecat-CVE-2016-1935.patch,
  gnu/packages/patches/icecat-bug-1146335-pt1.patch,
  gnu/packages/patches/icecat-bug-1146335-pt2.patch,
  gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New
  files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-01-28 00:34:20 -05:00
Mark H Weaver 412bee5e29 Merge branch 'master' into core-updates 2016-01-24 21:04:54 -05:00
Ricardo Wurmus 94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Mark H Weaver 86fa2ea92f gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}. 
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
  gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
  gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff): Update to 4.0.6.
  [source]: Add patches.
 2016-01-21 00:30:15 -05:00
Eric Bavier 97b07aaa41 gnu: Add perl-module-pluggable. 
This Perl module was moved out of Perl core in v5.19.0.

* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-20 17:45:31 -06:00
Mark H Weaver beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728. 
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
 2016-01-20 13:23:42 -05:00
Andreas Enge f32ee38fcd gnu: arb: Correct patch. 
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
 2016-01-20 16:57:17 +01:00
Andreas Enge ffc8f34511 gnu: arb: Update to 2.8.1. 
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-01-20 16:33:34 +01:00
Andreas Enge 7c853c02b8 gnu: doxygen: Update to 1.8.11. 
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
  Drop one patch.
  [build-system]: Switch to cmake-build-system, since gnu-build-system
  is not supported any more.
  [arguments]: Adapt.
  [native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-01-20 13:19:48 +01:00
Mark H Weaver afe9f40949 Merge branch 'master' into core-updates 2016-01-19 00:18:37 -05:00
Mark H Weaver 8d9bae4ed7 gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558]. 
* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
  [source]: Remove patch.
 2016-01-15 18:03:02 -05:00
Ludovic Courtès 89b48232f8 gnu: automake: Adjust to deal with Perl 5.22. 
Fixes <http://bugs.gnu.org/22375>.

* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-15 14:23:46 +01:00
Ricardo Wurmus 0047d26a22 gnu: bowtie: Update to 2.2.6. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
 2016-01-14 14:43:25 +01:00
Ludovic Courtès 76002e54f2 gnu: gawk: Protect against random failures of the 'fts' test. 
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-14 10:43:08 +01:00
Ludovic Courtès 8c986ab120 Merge branch 'master' into core-updates 2016-01-13 18:18:48 +01:00
Eric Bavier c91d3fb7f4 gnu: boost: Update to 1.60.0. 
* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
 2016-01-12 21:07:53 +01:00
Mark H Weaver 203795acea gnu: perl: Add fix for CVE-2015-8607. 
* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
 2016-01-12 13:12:07 -05:00
Mark H Weaver 16aa649117 gnu: sudo: Add fix for CVE-2015-5602. 
* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
 2016-01-12 11:23:06 -05:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-01-11 00:36:13 +10:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575]. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
 2016-01-08 15:29:50 -05:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers. 
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
 2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'. 
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
 2016-01-07 02:35:38 -05:00
Efraim Flashner 93b3a8b0ee gnu: flex: Update to 2.6.0. 
* gnu/packages/flex.scm (flex): Update to 2.6.0.
[source]: Remove flex-bison-tests.patch.
* gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch.
* gnu/packages/patches/flex-bison-tests.patch: Remove it.
 2016-01-07 08:42:15 +02:00
Efraim Flashner 5a75865f9d gnu: gnutls: Update to 3.4.7. 
* gnu/packages/tls.scm (gnutls): Update to 3.4.7.
[source]: Remove gnutls-doc-fix.patch.
[arguments]: Remove delete-prebuilt-unfixed-info-file phase.
[native-inputs]: Remove texinfo.
* gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
 2016-01-05 21:06:59 +02:00
Roel Janssen a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Ludovic Courtès a2ab82db9a gnu: python: Honor 'C_INCLUDE_PATH'. 
This is a followup to 009b53fd.

* gnu/packages/patches/python-3-search-paths.patch: Check
'C_INCLUDE_PATH' instead of 'CPATH'.
* gnu/packages/patches/python-2.7-search-paths.patch: Likewise.
 2016-01-05 13:13:17 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00
Ludovic Courtès 53334dd6e9 Merge branch 'master' into core-updates 2016-01-03 14:53:03 +01:00
Ludovic Courtès 1575dcd134 gnu: grep: Skip timing-sensitive test. 
This avoids failures on loaded machines as seen
at <http://hydra.gnu.org/build/906900/log/raw>.

* gnu/packages/patches/grep-timing-sensitive-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (grep): Use it.
 2016-01-03 14:50:29 +01:00
Eric Bavier 209778717a gnu: Add Asymptote. 
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-02 16:04:55 -06:00
Ludovic Courtès e80d2555f5 gnu: findutils: Update to 4.6.0. 
* gnu/packages/patches/findutils-absolute-paths.patch: Remove.
* gnu/packages/patches/findutils-test-xargs.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/base.scm (findutils): Update to 4.6.0.  Remove
'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
 2016-01-01 01:05:06 +01:00
Leo Famulari b7e7d1b9d3 gnu: fuse: Update to 2.9.4. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
  [source]: Remove patch.
 2015-12-29 14:20:55 -05:00
Mark H Weaver 097190417f gnu: icecat: Update to 38.5.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
  gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
  [source]: Remove patches.
 2015-12-23 18:19:59 -05:00
Leo Famulari f0150f8724 gnu: grub: Add fix for CVE-2015-8730. 
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
 2015-12-21 12:33:55 -05:00
Ludovic Courtès 8309c3899a gnu: commencement: Use GMP 6.0.0a for bootstrapping. 
* gnu/packages/multiprecision.scm (gmp-6.0): New variable.
* gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated
from before e414a7d.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-18 18:38:22 +01:00
Mark H Weaver 3faf214a0b gnu: icecat: Add fixes for several security flaws. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-12-17 14:12:06 -05:00
Federico Beffa fceac88039 gnu: python-ipython: Patch 'ctypes' bug. 
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: New patch.
* gnu/packages/python.scm (python-ipython): Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-15 18:05:42 +01:00
Efraim Flashner 9c1c2a7f8d gnu: bluez: Update to 5.36. 
* gnu/packages/linux.scm (bluez): Update to 5.36.
[source]: Remove patch.
* gnu/packages/patches/bluez-tests.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-12-14 11:06:20 +02:00
Ludovic Courtès 4187fe750f gnu: perl: Build deterministically, and make byproducts deterministic. 
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.

* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès 4de3507483 gnu: perl: Update to 5.22.0. 
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-12-13 11:28:54 +01:00
Ludovic Courtès e82e55e58c Merge branch 'master' into core-updates 2015-12-12 11:48:46 +01:00
Ludovic Courtès 6a4db3f361 gnu: libarchive: Fix test failure on SELinux systems. 
Reported by Jan Synáček <jan.synacek@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00522.html>.

* gnu/packages/patches/libarchive-bsdtar-test.patch: New file.
* gnu/packages/backup.scm (libarchive)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-09 23:10:10 +01:00
Mark H Weaver 821060f3f6 gnu: libxml2: Update to 2.9.3. 
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-8035.patch,
  gnu/packages/patches/libxml2-bug-737840.patch,
  gnu/packages/patches/libxml2-bug-738805.patch,
  gnu/packages/patches/libxml2-bug-746048.patch,
  gnu/packages/patches/libxml2-bug-747437.patch,
  gnu/packages/patches/libxml2-bug-751603.patch,
  gnu/packages/patches/libxml2-bug-751631.patch,
  gnu/packages/patches/libxml2-bug-754946.patch,
  gnu/packages/patches/libxml2-bug-754947.patch,
  gnu/packages/patches/libxml2-bug-755857.patch,
  gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
  gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt2.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2): Update to 2.9.3.  Remove patches.
 2015-12-07 09:54:01 -05:00
Leo Famulari 99fffa8ae0 gnu: Add python-configobj. 
* gnu/packages/python.scm (python-configobj, python2-configobj): New
  variables.
* gnu/packages/patches/python-configobj-setuptools.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-12-05 09:44:37 -05:00
Mark H Weaver b9fa245fcd gnu: icecat: Update to 38.4.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-4513-pt01.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt02.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt03.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt04.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt05.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt06.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt07.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt08.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt09.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt10.patch,
  gnu/packages/patches/icecat-CVE-2015-4513-pt11.patch,
  gnu/packages/patches/icecat-CVE-2015-7188.patch,
  gnu/packages/patches/icecat-CVE-2015-7189.patch,
  gnu/packages/patches/icecat-CVE-2015-7193.patch,
  gnu/packages/patches/icecat-CVE-2015-7194.patch,
  gnu/packages/patches/icecat-CVE-2015-7196.patch,
  gnu/packages/patches/icecat-CVE-2015-7197.patch,
  gnu/packages/patches/icecat-CVE-2015-7198.patch,
  gnu/packages/patches/icecat-CVE-2015-7199.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.4.0-gnu1.  Remove the
  obsolete patches.
 2015-12-04 15:52:16 -05:00
Andreas Enge e414a7dec3 gnu: gmp: Drop patch included in release 6.1.0. 
* gnu/packages/multiprecision.scm (gmp)[source]: Drop patch.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2015-12-02 20:03:51 +01:00
Federico Beffa 1bbc659fd2 gnu: python-matplotlib: Add 'TkAgg' backend and update to version '1.4.3'. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Do it.
* gnu/packages/patches/matplotlib-setupext-tk.patch: New file.
* gnu-system.am (dist_patch_DATA): Add the new patch.
 2015-12-02 18:21:13 +01:00
Ludovic Courtès 9820a6d4a0 gnu: python: Make 'sys.version' deterministic. 
* gnu/packages/patches/python-2-deterministic-build-info.patch,
  gnu/packages/patches/python-3-deterministic-build-info.patch: New
  files.
* gnu/packages/python.scm (python-2, python): Use them.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès dedc832070 gnu: python-2: Honor 'SOURCE_DATE_EPOCH'. 
* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
  [arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
  procedure.
  (%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès f8e7fdc416 gnu: tcl: Produce 'tclIndex' files deterministically. 
* gnu/packages/patches/tcl-mkindex-deterministic.patch: New patch.
* gnu/packages/tcl.scm (tcl)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-29 22:59:28 +01:00
宋文武 79c8a071e7 tk: Hardcode path to TK_LIBRARY. 
Fixes <http://bugs.gnu.org/20889>.

* gnu/packages/patches/tk-find-library.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tk)[source]: Add patch.
 2015-11-29 22:59:28 +01:00
Ludovic Courtès cb7bd0cff5 gnu: weechat: Dynamically link against libpython2.7.so. 
* gnu/packages/patches/weechat-python.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/weechat.scm (weechat)[source]: Use it.
 2015-11-29 19:17:33 +01:00
Ludovic Courtès f79a576e77 gnu: jasper: Patch CVE-2008-3522. 
* gnu/packages/patches/jasper-CVE-2008-3522.patch: New file.
* gnu/packages/image.scm (jasper)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-28 16:29:11 +01:00
David Thompson 33ae9107d8 gnu: Add tinyxml. 
* gnu/packages/xml.scm (tinyxml): New variable.
* gnu/packages/patches/tinyxml-use-stl.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-25 11:44:11 -05:00
Ludovic Courtès b6094b1f0a gnu: dico: Sort entries in .a files deterministically. 
* gnu/packages/patches/dico-libtool-deterministic.patch: New file.
* gnu/packages/dico.scm (dico)[source]: Use it.
[arguments]: Add #:make-flags.
* gnu-system.am (dist_patch_DATA): Add the patch.
 2015-11-25 11:59:54 +01:00
Ricardo Wurmus 7775a18690 gnu: Add Synfig. 
* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-20 20:23:03 +01:00