* gnu/packages/patches/shishi-fix-libgcrypt-detection.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kerberos.scm (shishi)[source]: Use it.
[inputs]: Use libgcrypt instead of libgcrypt-1.5.
[arguments]: Set 'ac_cv_libgcrypt=yes' in #:configure-flags.
* gnu/packages/gnupg.scm (libgcrypt-1.5): Remove variable.
* gnu/packages/patches/intltool-perl-compatibility.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (intltool)[source]: Use it.
See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the
rationale.
* gnu/packages/patches/ansible-wrap-program-hack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (ansible)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/networking.scm (quagga): New variable.
* gnu/packages/patches/quagga-reproducible-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
This is followup to 665d6a5916.
Fixes <https://bugs.gnu.org/27489>.
* gnu/packages/base.scm (glibc-2.25-patched, glibc-2.24, glibc-2.23)
(glibc-2.22): Add glibc-vectorized-strcspn-guards.patch to patches.
Move a comment where it belongs.
* gnu/packages/patches/glibc-CVE-2017-1000366-pt2.patch: Swap with ...
* gnu/packages/patches/glibc-CVE-2017-1000366-pt3.patch: ... this.
* gnu/packages/patches/glibc-vectorized-strcspn-guards.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it. Fix formatting.
* gnu/packages/patches/exim-CVE-2017-1000369.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
This commit applies the patch to the libtiff package, not the grafting
replacement.
* gnu/packages/patches/libtiff-tiffgetfield-bugs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff)[source]: Use it.
Fixes CVE-2014-8128, CVE-2015-7554, CVE-2016-5318, CVE-2016-10095, and
the other bugs listed in 'libtiff-tiffgetfield-bugs.patch'.
* gnu/packages/patches/libtiff-tiffgetfield-bugs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use it.
* gnu/packages/embedded.scm (propeller-gcc-4): New variable.
* gnu/packages/patches/gcc-4.6-gnu-inline.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/osip-CVE-2017-7853.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/telephony.scm (osip)[source]: Use it.
Partly fixes <https://bugs.gnu.org/26976>.
* gnu/packages/patches/guile-ssh-channel-finalization.patch: New file.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/libmwaw-CVE-2017-9433.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libmwaw)[source]: Use it.
This update addresses the following security advisories:
GNUTLS-SA-2017-3 (aka CVE-2017-7869) and GNUTLS-SA-2017-4.
See <https://gnutls.org/security.html> and <https://gnutls.org/news.html>.
* gnu/packages/patches/gnutls-skip-pkgconfig-test.patch,
gnu/packages/patches/gnutls-skip-trust-store-test.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register patches.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls-3.5.13): New variable.
(gnutls/guile-2.2)[replacement]: New field. Set #f.
[source]: Inherit from GNUTLS-3.5.13.
* gnu/packages/patches/gcc-asan-powerpc-missing-include.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl/fixed): New variable.
* gnu/packages/patches/perl-file-path-CVE-2017-6512.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (openscenegraph): New variable.
* gnu/packages/patches/openscenegraph-ffmpeg3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
This commit reverts 'patch' hack introduced in
a48a1071a6 and fixes bug in the Clar test
framework.
Patch is proposed to Clar upstream as
<https://github.com/vmg/clar/pull/78>.
* gnu/local.mk: Add libgit2-0.25.1-mtime-0.patch.
* gnu/packages/patches/libgit2-0.25.1-mtime-0.patch: New file.
* gnu/packages/version-control.scm (libgit2)[arguments]:
Remove 'apply-patch' phase.
[inputs]: Remove "patch".
[source]: Add 'patches' field.
Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/patches/openldap-CVE-2017-9287.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/openldap.scm (openldap)[replacement]: New field.
(openldap/fixed): New variable.
* gnu/packages/image.scm (jasper): Update to 2.0.13.
[source]: Use GitHub URL and set the file-name. Remove
'jasper-CVE-2017-6850.patch'.
* gnu/packages/patches/jasper-CVE-2017-6850.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/rxvt-unicode-escape-sequences.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (rxvt-unicode)[source]: Use it.
See 'ChangeLog' in the source distribution for more information about
the bugs and security issues fixed in this release.
* gnu/packages/image.scm (libtiff)[replacement]: Replace with libtiff-4.0.8.
(libtiff/fixed): Replace with ...
(libtiff-4.0.8): New variable.
* gnu/packages/patches/libtiff-CVE-2017-7593.patch,
gnu/packages/patches/libtiff-CVE-2017-7594.patch,
gnu/packages/patches/libtiff-multiple-UBSAN-crashes.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
This is a followup to 6a09628cb1.
(picked from the wrong branch, sorry!)
* gnu/packages/tls.scm (libtasn1)[source]: Remove upstreamed patch.
* gnu/packages/patches/libtasn1-CVE-2017-6891.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/gajim-CVE-2016-10376.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (gajim)[source]: Use it.
* gnu/packages/python.scm (python-genshi, python2-genshi): New variables.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch: New file.
* gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch: New file.
* gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch: New file.
* gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch: New file.
* gnu/packages/patches/python-genshi-isstring-helper.patch: New file.
* gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
* gnu/packages/patches/libtasn1-CVE-2017-6891.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.
* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file.
[inputs]: Add python2-feedparser as an input.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
* gnu/packages/patches/qtscript-disable-tests.patch: New file.
* gnu/packages/qt.scm (qtscript)[source]: Use it.
* gnu/local.am (dist_patch_DATA): Register it.
This fixes a regression introduced by the fix for CVE-2017-2616.
See <https://github.com/shadow-maint/shadow/pull/72> for more information.
* gnu/packages/admin.scm (shadow): Update to 4.5.
[source]: Remove patches.
* gnu/packages/patches/shadow-4.4-su-snprintf-fix.patch,
gnu/packages/patches/shadow-CVE-2017-2616.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
See <https://bugs.gnu.org/25836> for background.
* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/guile-ssh-rexec-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): New field.
* gnu/packages/patches/reptyr-fix-gcc-7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patch.
* gnu/packages/screen.scm (reptyr): Use patch.
* gnu/packages/patches/miniupnpc-CVE-2017-8798.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/upnp.scm (miniupnpc)[source]: Use it.
* gnu/packages/cdrom.scm (dvd+rw-tools): New variable.
* gnu/packages/patches/dvd+rw-tools-add-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cdrom.scm (cdrtools): New variable.
* gnu/packages/patches/cdrtools-3.01-mkisofs-isoinfo.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/lxterminal-CVE-2016-10369.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lxde.scm (lxterminal)[source]: Use it.
This avoids a warning from GNU tar upon "make dist" about file names
that are too long for POSIX tar.
* gnu/packages/patches/perl-net-dns-resolver-programmable-Fix-broken-interface.patch:
Rename to...
* gnu/packages/patches/perl-net-dns-resolver-programmable-fix.patch:
... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable)[source]:
Likewise.
* gnu/packages/gnuzilla.scm (icecat): Update to 52.1.0-gnu1. Remove patches
that are included in the new release. In the snippet, don't try to remove
dom/devicestorage, which has since been removed upstream. Add selected fixes
from upstream mozilla-esr52, up to the ESR 52.1.1 release.
* gnu/packages/patches/icecat-bug-1299500-pt10.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/gnome-shell-CVE-2017-8288.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-shell)[source]: Use it.
Co-authored-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/glibc-memchr-overflow-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]:
Add the patch conditionally for i686 systems.
* gnu/packages/base.scm (glibc/linux)[native-inputs]: Add the patch
conditionally for i686 systems.
[arguments]: Apply the patch conditionally on i686 systems.
* gnu/packages/patches/ghostscript-CVE-2017-8291.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript-with-x)[replacement]: New field.
* gnu/packages/hurd.scm (hurd): New variable.
* gnu/packages/patches/hurd-fix-eth-multiplexer-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat): Update to 52.0.2-gnu1.
[source]: Remove all patches except "icecat-avoid-bundled-libraries.patch".
Add selected fixes from the upstream mozilla-esr52 repository, up to 52.1.
Remove "dom/devicestorage" in the snippet.
[inputs]: Remove gstreamer and gst-plugins-base. Add ffmpeg and gtk+3. Move
yasm to native-inputs.
[native-inputs]: Add autoconf-2.13 and yasm.
[arguments]: In configure-flags, remove the following switches which are no
longer accepted: --enable-{pango,svg,canvas,mathml,gstreamer=1.0} and
"--disable-gnomevfs". Use "--enable-default-toolkit=cairo-gtk3" to switch to
Gtk+3. Remove the 'remove-h264parse-from-blacklist' phase. Adapt the
'arrange-to-link-libxul-with-libraries-it-might-dlopen' phase as needed. In
the 'configure' phase, set the AUTOCONF environment variable.
(mozilla-patch): Update the URL pattern to fetch from the mozilla-esr52
repository.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to mozilla-esr52.
* gnu/packages/patches/icecat-binutils.patch: Remove file.
* gnu/packages/patches/icecat-bug-1299500-pt10.patch: New file.
* gnu/local.mk (dist_patch_DATA): Remove "icecat-binutils.patch".
Add "icecat-bug-1299500-pt10.patch".
Suggested by Marius Bakke <mbakke@fastmail.com> in
<https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00440.html>.
* gnu/packages/patches/nss-disable-long-b64-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (nss)[source]: Add patch.
* gnu/packages/patches/icu4c-CVE-2017-7867-CVE-2017-7868.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c/fixed)[source]: Use it.
* gnu/packages/patches/mesa-fix-32bit-test-failures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Use it.
* gnu/packages/patches/fabric-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (fabric)[source]: Use it.
[native-inputs]: Add PYTHON2-FUDGE, PYTHON2-JINJA2 and PYTHON2-NOSE.
[arguments]<#:tests>: Remove.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu/packages/patches/libsndfile-armhf-type-checks.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Use it.
* gnu/packages/patches/findutils-gnulib-multi-core.patch: New file.
* gnu/local.mk (dist_patch): Add previous patch.
* gnu/packages/base.scm (findutils)[patches]: Add a reference
to the previous patch.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu/packages/patches/mesa-skip-disk-cache-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa): Update to 17.0.4.
[source]: Adapt URI to new directory structure.
[arguments]: End phases on #t. Remove stray whitespaces.
[home-page]: Use HTTPS.
Fixes <http://bugs.gnu.org/26462>.
* gnu/packages/patches/icu4c-reset-keyword-list-iterator.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/storage.scm (ceph)[source]: Use it.
Also delete two stray patches that were added in
92ae98e2a0 and lost in a subsequent merge
(mupdf/fixed was already gone at e90e0fad1b).
* gnu/packages/patches/mupdf-CVE-2017-5896.patch,
gnu/packages/patches/mupdf-CVE-2017-5991.patch,
gnu/packages/patches/mupdf-mujs-CVE-2016-10132.patch,
gnu/packages/patches/mupdf-mujs-CVE-2016-10133.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Adjust.
* gnu/packages/pdf.scm (mupdf): Update to 1.11.
[source]: Remove mujs patches. Adjust snippet to source rename.
* gnu/packages/patches/libffi-3.2.1-complex_alpha.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libffi.scm (libffi)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/patches/gettext-gnulib-multi-core.patch: New file.
* gnu/packages/patches/gettext-multi-core.patch: New file.
* gnu/packages/gettext.scm (gettext-minimal)[patches]: Add a reference
to the two previous patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/mail.scm (dovecot): Update to 2.2.29.
[source]: Use 'dovecot-fix-failing-test.patch'.
* gnu/packages/patches/dovecot-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image-viewers.scm (luminance-hdr): New variable.
* gnu/packages/patches/luminance-hdr-qt-printer.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/pcre-CVE-2017-7186.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre/fixed): New variable.
* gnu/packages/patches/screen-fix-info-syntax-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/screen.scm (screen)[source]: Use it.
* gnu/packages/patches/glog-gcc-5-demangling.patch: New file.
* gnu/packages/logging.scm (glog)[sources]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/audacity.scm (audacity): Update to 2.1.3.
[source]: Fetch gzipped tar archive instead of a zip archive; remove
unnecessary patch.
[native-inputs]: Add autoconf, automake and libtool.
[arguments]: Add autoreconf phase to detect system libraries.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: Delete patch.
* gnu/local.mk: Remove reference to removed patch.
* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (jbig2dec)[source]: Use it.
* gnu/packages/patches/ruby-concurrent-test-arm.patch: New file.
* gnu/packages/ruby.scm (ruby-concurrent)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/storage.scm (ceph): Update to 12.0.1.
[arguments]: Disable one new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust context.
* gnu/packages/gnuzilla.scm (mozjs@24)[source]: Add patch.
[arguments]: Add flag for building on aarch64-linux, delete failing test.
* gnu/packages/patches/mozjs24-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.6.
[arguments]: Add phase 'autoreconf, because configure.ac is patched. Add
configure flag "--with-mdds=1.2".
[inputs]: Add liblangtag.
[native-inputs]: Add autoconf and automake.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.2.
[source]: Use patch.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/ustr-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (ustr)[source]: Use patch.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
* gnu/packages/patches/graphite2-ffloat-store.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (graphite2): Use it.
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.
* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
* gnu/packages/patches/nss-increase-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (nss)[source]: Use it.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/kio-CVE-2017-6410.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kio)[source]: Use it.
* gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: New file.
* gnu/local.scm (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/patches/fontconfig-path-max.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
Signed-off-by: Manolis Ragkousis <manolis837@gmail.com>
* gnu/packages/patches/libdrm-symbol-check.patch: Add the extra seven
symbols from the public headers to the radeon-symbol-check to satisfy
the test. Also add aarch64-linux to the list of architectures affected.
In glibc-2.25 a dependency on "linux/falloc.h" was added.
This also reverts commit 8f8f250bdc
which is no longer needed. This commit was not compatible with
the glibc version Hurd is using. See
<https://lists.gnu.org/archive/html/guix-devel/2017-02/msg01046.html>
* guix/build/make-bootstrap.scm (make-stripped-libc): Copy "falloc.h"
to the new system.
* gnu/packages/patches/glibc-bootstrap-system.patch: Remove part
that touches fcntl-linux.h.
Problem reported by Andreas Enge <andreas@enge.fr>.
* gnu/packages/patches/libssh2-fix-build-failure-with-gcrypt.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (libssh2)[source]: Use it.
[arguments]: Add 'autoreconf' phase.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
* gnu/packages/patches/fontconfig-charwidth-symbol-conflict.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
* gnu/packages/patches/eudev-conflicting-declaration.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (eudev)[source]: Use it.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
* gnu/packages/patches/util-linux-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
* gnu/packages/patches/libxcb-python-3.5-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxcb): Update to 1.12.
[source]: Add patch. Download from new home.
[home-page]: Change to new xcb.fd.o home.
* gnu/packages/patches/xcb-proto-python3-print.patch,
gnu/packages/patches/xcb-proto-python3-whitespace.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xcb-proto): Update to 1.12.
[source]: Use patches. Download from new home.
[home-page]: Change to new xcb.fd.o home.
* gnu/packages/patches/xf86-input-wacom-xorg-abi-25.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (xf86-input-wacom)[source](patches): Use it.
Conflicts:
gnu/local.mk: Missing mention of gdk-pixbuf-list-dir.patch in the
commit log really confused me here... It's from 8c6b077bfa (staging).
gnu/packages/xorg.scm: xkeyboard-config updated both places.
* gnu/packages/patches/glibc-bootstrap-system.patch: Revert a change
from glibc-2.25 which would require the bootstrap-glibc to require the
linux-kernel-headers.
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dav.scm (vdirsyncer)[source]: Use it.
* gnu/packages/python.scm (python-pygit2, python2-pygit2)[source](patches):
New field.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/screen-CVE-2017-5618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/screen.scm (screen)[source]: Use it.
* gnu/packages/parallel.scm (slurm): Update to 16.05.9.1.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
Removing two contribs which are added in the new version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
* gnu/packages/patches/libevent-2.1-skip-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent)[source]: Use it.
* gnu/packages/ocaml.scm (omake): New variable.
* gnu/packages/patches/omake-fix-non-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
This is a followup to commit 2429dde57d.
* gnu/packages/patches/ldc-1.1.0-disable-dmd-tests.patch,
gnu/packages/patches/ldc-1.1.0-disable-phobos-tests.patch: New files.
* gnu/packages/patches/coreutils-fix-cross-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (coreutils)[source]: Use it.
* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg-2.1.2)[source]: Use it.
* gnu/packages/patches/lcms-fix-out-of-bounds-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (lcms)[replacement]: New field.
[properties]: Specify the 'cpe-name'.
(lcms/fixed): New variable.
* gnu/packages/patches/libtiff-CVE-2017-5225.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
* gnu/packages/patches/cracklib-fix-buffer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (cracklib)[source]: Use it.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.6.
[source]: Use 'GitHub' source.
[arguments]: Run tests without 'Rakefile'.
[native-inputs]: Replace 'ruby-rspec-2' with ruby-rspec'.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/python-pygpgme-fix-pinentry-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[source]: Use it.
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/unrtf.scm (unrtf)[source]: Use it.
* gnu/packages/ocaml.scm (ocaml-bitstring): New variable.
* gnu/packages/patches/ocaml-bitstring-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
Signed-off-by: David Craven <david@craven.ch>
This fixes CVE-2012-{4409,4527}.
This is a followup to commit fd1461879c.
* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
* gnu/packages/patches/tar-CVE-2016-6321.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (tar)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-5131.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add it.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
* gnu/packages/patches/libxml2-CVE-2016-4658.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/gnupg-test-segfault-on-32bit-arch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
kdbusaddons needs to know the location of the kdeinit5 executable,
provided by kinit. kinit depends on kdbusaddons, so we add bootstrap
versions of all packages in the dependency chain from kinit to
kdbusaddons to avoid cyclic dependencies.
* gnu/packages/kde-frameworks.scm (kinit-bootstrap,
kdbusaddons-bootstrap): New variables.
(kdbusaddons)[inputs]: Add kinit-bootstrap.
[source,arguments]: Add patch and substitution to embed
kinit-bootstrap's store directory in the code.
* gnu/packages/patches/kdbusaddons-kinit-file-name.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/patches/libupnp-CVE-2016-8863.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/libupnp.scm (libupnp)[source]: Use it.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[source]: Use it.
[arguments]: Replace 'check' with custom phase.
This reinstates and adjusts
commit e3d0fcbf7e.
* gnu/packages/patches/gcc-libiberty-printf-decl.patch: New file.
* gnu/packages/gcc.scm (gcc-5)[source]: Use it.
[patches]: Add "gcc-arm-bug-71399.patch".
(gcc): Switch to GCC-5.
* gnu/packages/commencement.scm (libstdc++-boot0): New variable.
(gcc-boot0)[inputs]: Add it.
(gcc-toolchain-4.9): Switch to GCC-4.9.
(gcc-toolchain-5): Switch to GCC-FINAL.
* gnu/local.mk (dist_patch_DATA): Add 'gcc-libiberty-printf-decl.patch'.
* gnu/packages/image.scm (openjpeg)[replacement]: New field.
(openjpeg/fixed): New variable, patch against CVE-2016-9850,
CVE-2016-9851.
* gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file.
* gnu/packages/gl.scm (libepoxy)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[replacement]: New field.
(tcsh/fixed): New variable.
* gnu/packages/patches/readline-7.0-mingw.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline): Support MinGW.
* gnu/packages/gnuzilla.scm (icecat): Update to 45.5.1-gnu1.
[source]: Remove temporary URI for 45.3 beta. Fix URI computation. Remove
outdated patches. Add more cherry-picked bug fixes from upstream
mozilla-esr45. Use 'list' instead of quasiquote in 'patches' field.
* gnu/packages/assembly.scm (nasm)[source]: Remove patch.
[arguments]: Disable ps and pdf doc outputs in new phase.
* gnu/packages/patches/nasm-no-ps-pdf.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb)[source]: Use patch.
[replacement]: New field, set false.
* gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be
replaced by a new custom patched cairo.
* gnu/packages/patches/cairo-CVE-2016-9082.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field.
(cyrus-sasl/fixed): New variable.
[source]: Use patch.
* gnu/packages/patches/lvm2-static-link.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (lvm2)[source](patches): New field.
(lvm2-static): New variable.
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0. Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-fixed)[source]: Use it.
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libwebp)[source]: Use it.
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.
This is a follow-up to 47a04fca99.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
* gnu/packages/patches/slim-login.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
* gnu/packages/patches/slim-reset.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
* gnu/packages/patches/openssh-memory-exhaustion.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
* gnu/packages/patches/python-file-double-encoding-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-file)[source]: Use it.
(python2-file)[source]: Use the source of FILE directly, without the
patch.
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mail.scm (notmuch)[source]: Use patch.
[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to
fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch
test shebangs and set environment.
[native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach,
gnupg, man, perl and which.
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable.
* gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file.
* gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patches.
* gnu/packages/patches/tcsh-do-not-define-BSDWAIT.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[source]: Use it.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxvmc)[replacement]: New field.
(libxvmc/fixed): New variable.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxv)[replacement]: New field.
(libxv/fixed): New variable.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxtst)[replacement]: New field.
(libxtst/fixed): New variable.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxrandr)[replacement]: New field.
(libxrandr/fixed): New variable.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxi)[replacement]: New field.
(libxi/fixed): New variable.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxfixes)[replacement]: New field.
(libxfixes/fixed): New variable.
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756.
* gnu/packages/patches/metabat-remove-compilation-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/linux-pam-no-setfsuid.patch: New file.
* gnu/packages/linux.scm (linux-pam)[source]: Use it.
(linux-pam-1.2)[source]: Likewise.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes a 'binutils-cross-boot0' build failure on mips64el.
Reported at
<https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01083.html>.
* gnu/packages/patches/binutils-mips-bash-bug.patch: New file.
* gnu/packages/base.scm (binutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
Leo Famulari